Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59470.t1 | XP_003612174.1 | 97.5 | 522 | 13 | 0 | 31 | 552 | 26 | 547 | 8.10E-290 | 1005.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59470.t1 | O04472 | 64.3 | 529 | 179 | 3 | 31 | 551 | 14 | 540 | 3.8e-203 | 709.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59470.t1 | G7JW84 | 97.5 | 522 | 13 | 0 | 31 | 552 | 26 | 547 | 5.8e-290 | 1005.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene86930 | MS.gene59470 | PPI |
| MS.gene59470 | MS.gene91317 | PPI |
| MS.gene074377 | MS.gene59470 | PPI |
| MS.gene25932 | MS.gene59470 | PPI |
| MS.gene71606 | MS.gene59470 | PPI |
| MS.gene59470 | MS.gene96701 | PPI |
| MS.gene033221 | MS.gene59470 | PPI |
| MS.gene60344 | MS.gene59470 | PPI |
| MS.gene59470 | MS.gene43290 | PPI |
| MS.gene70604 | MS.gene59470 | PPI |
| MS.gene022275 | MS.gene59470 | PPI |
| MS.gene56947 | MS.gene59470 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59470.t1 | MTR_5g022110 | 96.196 | 552 | 16 | 1 | 1 | 552 | 1 | 547 | 0.0 | 1082 |
| MS.gene59470.t1 | MTR_3g103230 | 76.938 | 529 | 122 | 0 | 24 | 552 | 26 | 554 | 0.0 | 864 |
| MS.gene59470.t1 | MTR_8g063220 | 59.176 | 534 | 209 | 3 | 26 | 552 | 2 | 533 | 0.0 | 665 |
| MS.gene59470.t1 | MTR_3g078270 | 58.256 | 539 | 213 | 2 | 17 | 552 | 3 | 532 | 0.0 | 658 |
| MS.gene59470.t1 | MTR_4g106750 | 57.250 | 531 | 223 | 2 | 26 | 552 | 2 | 532 | 0.0 | 640 |
| MS.gene59470.t1 | MTR_5g035180 | 56.564 | 518 | 221 | 2 | 39 | 552 | 21 | 538 | 0.0 | 625 |
| MS.gene59470.t1 | MTR_1g106085 | 55.766 | 529 | 226 | 4 | 26 | 551 | 3 | 526 | 0.0 | 592 |
| MS.gene59470.t1 | MTR_4g106750 | 57.469 | 482 | 202 | 1 | 74 | 552 | 2 | 483 | 0.0 | 578 |
| MS.gene59470.t1 | MTR_2g016460 | 52.672 | 524 | 238 | 4 | 31 | 550 | 5 | 522 | 0.0 | 567 |
| MS.gene59470.t1 | MTR_8g086520 | 52.390 | 523 | 241 | 4 | 31 | 550 | 5 | 522 | 0.0 | 567 |
| MS.gene59470.t1 | MTR_3g080390 | 51.938 | 516 | 240 | 4 | 40 | 550 | 6 | 518 | 0.0 | 548 |
| MS.gene59470.t1 | MTR_8g086520 | 54.566 | 438 | 196 | 1 | 31 | 468 | 5 | 439 | 2.79e-176 | 506 |
| MS.gene59470.t1 | MTR_1g021120 | 51.262 | 515 | 238 | 5 | 44 | 551 | 38 | 546 | 1.69e-175 | 507 |
| MS.gene59470.t1 | MTR_8g086520 | 54.386 | 399 | 179 | 1 | 31 | 429 | 5 | 400 | 9.27e-159 | 459 |
| MS.gene59470.t1 | MTR_4g106750 | 57.568 | 370 | 154 | 1 | 186 | 552 | 11 | 380 | 1.78e-152 | 442 |
| MS.gene59470.t1 | MTR_8g086520 | 52.854 | 403 | 185 | 3 | 151 | 550 | 6 | 406 | 1.03e-149 | 436 |
| MS.gene59470.t1 | MTR_8g068550 | 34.641 | 459 | 277 | 3 | 31 | 468 | 205 | 661 | 8.09e-90 | 292 |
| MS.gene59470.t1 | MTR_5g032020 | 34.423 | 520 | 290 | 5 | 66 | 545 | 185 | 693 | 4.00e-89 | 289 |
| MS.gene59470.t1 | MTR_2g084895 | 32.679 | 560 | 328 | 7 | 33 | 549 | 125 | 678 | 9.28e-89 | 288 |
| MS.gene59470.t1 | MTR_2g103510 | 30.314 | 574 | 336 | 10 | 7 | 549 | 51 | 591 | 3.52e-84 | 273 |
| MS.gene59470.t1 | MTR_4g055290 | 32.197 | 528 | 300 | 7 | 64 | 549 | 169 | 680 | 1.43e-80 | 266 |
| MS.gene59470.t1 | MTR_8g086535 | 56.034 | 116 | 50 | 1 | 315 | 429 | 1 | 116 | 9.12e-34 | 124 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59470.t1 | AT1G65550 | 64.340 | 530 | 177 | 4 | 31 | 551 | 14 | 540 | 0.0 | 738 |
| MS.gene59470.t1 | AT5G62890 | 58.569 | 531 | 216 | 2 | 26 | 552 | 2 | 532 | 0.0 | 649 |
| MS.gene59470.t1 | AT5G62890 | 58.569 | 531 | 216 | 2 | 26 | 552 | 2 | 532 | 0.0 | 649 |
| MS.gene59470.t1 | AT5G62890 | 58.569 | 531 | 216 | 2 | 26 | 552 | 2 | 532 | 0.0 | 649 |
| MS.gene59470.t1 | AT1G60030 | 58.607 | 517 | 211 | 1 | 39 | 552 | 22 | 538 | 0.0 | 646 |
| MS.gene59470.t1 | AT1G10540 | 55.844 | 539 | 230 | 4 | 19 | 551 | 2 | 538 | 0.0 | 616 |
| MS.gene59470.t1 | AT5G49990 | 57.115 | 520 | 220 | 1 | 36 | 552 | 9 | 528 | 0.0 | 598 |
| MS.gene59470.t1 | AT5G49990 | 57.115 | 520 | 220 | 1 | 36 | 552 | 9 | 528 | 0.0 | 598 |
| MS.gene59470.t1 | AT5G49990 | 57.115 | 520 | 220 | 1 | 36 | 552 | 9 | 528 | 0.0 | 598 |
| MS.gene59470.t1 | AT5G49990 | 57.115 | 520 | 220 | 1 | 36 | 552 | 9 | 528 | 0.0 | 598 |
| MS.gene59470.t1 | AT1G49960 | 55.682 | 528 | 225 | 3 | 29 | 551 | 2 | 525 | 0.0 | 589 |
| MS.gene59470.t1 | AT5G62890 | 61.830 | 448 | 170 | 1 | 26 | 472 | 2 | 449 | 0.0 | 580 |
| MS.gene59470.t1 | AT2G34190 | 51.527 | 524 | 246 | 4 | 30 | 550 | 4 | 522 | 0.0 | 559 |
| MS.gene59470.t1 | AT2G05760 | 51.550 | 516 | 242 | 4 | 40 | 550 | 6 | 518 | 0.0 | 545 |
| MS.gene59470.t1 | AT2G26510 | 49.225 | 516 | 252 | 3 | 41 | 550 | 36 | 547 | 6.33e-171 | 495 |
| MS.gene59470.t1 | AT5G25420 | 56.136 | 440 | 123 | 4 | 31 | 470 | 26 | 395 | 5.82e-170 | 488 |
| MS.gene59470.t1 | AT1G10540 | 57.326 | 389 | 161 | 3 | 19 | 404 | 2 | 388 | 2.28e-157 | 455 |
| MS.gene59470.t1 | AT2G26510 | 49.725 | 364 | 183 | 0 | 41 | 404 | 36 | 399 | 1.78e-120 | 361 |
| MS.gene59470.t1 | AT2G26510 | 49.003 | 351 | 179 | 0 | 41 | 391 | 36 | 386 | 2.80e-113 | 343 |
| MS.gene59470.t1 | AT2G27810 | 29.623 | 584 | 373 | 5 | 3 | 549 | 119 | 701 | 9.50e-80 | 265 |
| MS.gene59470.t1 | AT2G27810 | 32.582 | 488 | 306 | 3 | 3 | 468 | 119 | 605 | 7.69e-78 | 260 |
| MS.gene59470.t1 | AT4G38050 | 31.541 | 558 | 312 | 8 | 39 | 549 | 170 | 704 | 1.20e-77 | 259 |
| MS.gene59470.t1 | AT2G27810 | 31.992 | 472 | 298 | 3 | 3 | 452 | 119 | 589 | 8.53e-72 | 240 |
| MS.gene59470.t1 | AT2G27810 | 32.235 | 425 | 265 | 3 | 3 | 405 | 119 | 542 | 1.17e-61 | 212 |
Find 123 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCCTTGAAACAGGAAAATT+TGG | 0.125556 | 5.4:+13691624 | MS.gene59470:intron |
| TTGGGCTTCTCATTCTTCTT+AGG | 0.198315 | 5.4:+13691888 | MS.gene59470:CDS |
| TGCATTGGTTGCATTAATTT+TGG | 0.216559 | 5.4:+13692112 | MS.gene59470:CDS |
| CTTGCGAAATGCGTTGAAAT+TGG | 0.244279 | 5.4:+13690240 | MS.gene59470:CDS |
| TGAGAAGCCCAACACAAATT+TGG | 0.250217 | 5.4:-13691877 | None:intergenic |
| ACTTCCTGCTTTAATTGTTA+TGG | 0.257766 | 5.4:+13690263 | MS.gene59470:CDS |
| ACCACCTTCATTGGCAGCTT+TGG | 0.293558 | 5.4:-13689025 | None:intergenic |
| AAGTCCTACTTTCAATGTTT+TGG | 0.295517 | 5.4:+13690802 | MS.gene59470:CDS |
| ACCTATAATTTCTATTGTTC+AGG | 0.295647 | 5.4:+13689760 | MS.gene59470:CDS |
| TCAAGTTTCCAAATGGCTAT+TGG | 0.296920 | 5.4:+13689941 | MS.gene59470:CDS |
| GGCATGTTTGGTTGTGTAAC+TGG | 0.299241 | 5.4:+13691180 | MS.gene59470:CDS |
| AACTATAATTGTTCCTCAAA+TGG | 0.310349 | 5.4:+13689514 | MS.gene59470:CDS |
| TGCAGGTCAAGCAGTGATAT+TGG | 0.311608 | 5.4:+13689445 | MS.gene59470:intron |
| ATAGTTTCATTTACCTCATA+AGG | 0.311803 | 5.4:-13689809 | None:intergenic |
| GCATTATATTGTATATTATT+CGG | 0.323236 | 5.4:+13691684 | MS.gene59470:CDS |
| TCCTATGCTGCTGCAAGATA+TGG | 0.340951 | 5.4:+13690975 | MS.gene59470:CDS |
| AAAATGACAGTGGTTTAAAA+TGG | 0.346990 | 5.4:+13692168 | MS.gene59470:CDS |
| GCCTGAACAATAGAAATTAT+AGG | 0.356271 | 5.4:-13689761 | None:intergenic |
| TCTTTCACTGGCTGTGGTGC+TGG | 0.357369 | 5.4:-13689105 | None:intergenic |
| GGAGTAGGTGCTTTGTTTAG+TGG | 0.360576 | 5.4:+13691159 | MS.gene59470:CDS |
| TTAATGCAATATTGAATTCC+AGG | 0.362670 | 5.4:-13689135 | None:intergenic |
| TATGTAGCTTCTGCTGGTCT+TGG | 0.364528 | 5.4:+13691819 | MS.gene59470:intron |
| CGATTGCCAATTGTAGTTGT+TGG | 0.376597 | 5.4:+13689719 | MS.gene59470:CDS |
| GCCTCCACCACCACCTTCAT+TGG | 0.391683 | 5.4:-13689034 | None:intergenic |
| TGACAAAACATGGCTCAAAA+TGG | 0.404370 | 5.4:+13688988 | None:intergenic |
| TATGAACCAACAACTACAAT+TGG | 0.405084 | 5.4:-13689725 | None:intergenic |
| CCTTGTATAATGGAGATGTT+AGG | 0.407646 | 5.4:+13692204 | MS.gene59470:CDS |
| CAATATAATGCTGCTATGAT+TGG | 0.408090 | 5.4:-13691672 | None:intergenic |
| TATCAGCCGCGGAGCTGGTT+GGG | 0.413972 | 5.4:+13691025 | MS.gene59470:CDS |
| AATATATAGCTTACCCATCT+AGG | 0.414115 | 5.4:-13691969 | None:intergenic |
| GCTTTGTTTAGTGGCATGTT+TGG | 0.416996 | 5.4:+13691168 | MS.gene59470:CDS |
| AGGTGTGATGATCTCTTAAA+GGG | 0.417215 | 5.4:-13692276 | None:intergenic |
| ATGAACAAGAAAGTCCTAGA+TGG | 0.420567 | 5.4:+13691955 | MS.gene59470:CDS |
| GAGAAGTTCACCTTGTATAA+TGG | 0.421075 | 5.4:+13692194 | MS.gene59470:CDS |
| TCTATTATCAGCCGCGGAGC+TGG | 0.422496 | 5.4:+13691020 | MS.gene59470:CDS |
| TTCAGAACCAAATTTGTGTT+GGG | 0.425972 | 5.4:+13691870 | MS.gene59470:CDS |
| ATTTGAGGAACAATTATAGT+TGG | 0.426537 | 5.4:-13689512 | None:intergenic |
| GAAGGTGGTGGTGGAGGCGG+CGG | 0.426596 | 5.4:+13689039 | MS.gene59470:CDS |
| ACATTTCTTCAATCTTTGTT+CGG | 0.429936 | 5.4:+13689692 | MS.gene59470:CDS |
| GCAGGTCAAGCAGTGATATT+GGG | 0.430172 | 5.4:+13689446 | MS.gene59470:intron |
| CAGACACTTCTGTTTGTGTC+TGG | 0.433279 | 5.4:+13689662 | MS.gene59470:CDS |
| AACTGTTGAGGTTACAGAAC+TGG | 0.434392 | 5.4:-13691848 | None:intergenic |
| CAATGTAGGCTGAGAAGACT+AGG | 0.435755 | 5.4:+13689633 | MS.gene59470:intron |
| TTACTAGCATTAACAAAAGT+AGG | 0.438242 | 5.4:+13691350 | MS.gene59470:CDS |
| AGCGCGATCAGTTCGGCAAC+TGG | 0.440761 | 5.4:-13690586 | None:intergenic |
| AATGAAGGTGGTGGTGGAGG+CGG | 0.442126 | 5.4:+13689036 | MS.gene59470:CDS |
| CTTACCATGGAGCGGTGGTT+AGG | 0.443759 | 5.4:-13690614 | None:intergenic |
| ACATCTCCTCCACCCATTTG+AGG | 0.445664 | 5.4:-13689527 | None:intergenic |
| CCAGGTAATTGCTCTTTCAC+TGG | 0.449256 | 5.4:-13689117 | None:intergenic |
| ACTATAATTGTTCCTCAAAT+GGG | 0.450386 | 5.4:+13689515 | MS.gene59470:CDS |
| TTATCAGCCGCGGAGCTGGT+TGG | 0.454021 | 5.4:+13691024 | MS.gene59470:CDS |
| CTGTAATGCCTAGAGTTAGA+AGG | 0.455943 | 5.4:-13689481 | None:intergenic |
| GCTCCGCGGCTGATAATAGA+AGG | 0.458220 | 5.4:-13691017 | None:intergenic |
| TATTTACTGTCACAATTACA+TGG | 0.459016 | 5.4:+13690502 | MS.gene59470:CDS |
| CAGCATTACCTTCTAACTCT+AGG | 0.463095 | 5.4:+13689473 | MS.gene59470:CDS |
| GCCAATGAAGGTGGTGGTGG+AGG | 0.466316 | 5.4:+13689033 | MS.gene59470:CDS |
| GTTCCATATGTAACTTTCGC+TGG | 0.467362 | 5.4:+13690099 | MS.gene59470:CDS |
| AGAGTAATTCAAATTTCAGC+TGG | 0.468569 | 5.4:+13691380 | MS.gene59470:CDS |
| TGGAACTATGTAGCTTCTGC+TGG | 0.469454 | 5.4:+13691813 | MS.gene59470:intron |
| GTGATGATCTCTTAAAGGGC+TGG | 0.477946 | 5.4:-13692272 | None:intergenic |
| ACATATAACGGTTGCTGCAT+TGG | 0.478580 | 5.4:+13692097 | MS.gene59470:CDS |
| CATAAGTTCAAGTTTCCAAA+TGG | 0.478916 | 5.4:+13689934 | MS.gene59470:CDS |
| TATGTAACTTTCGCTGGACT+CGG | 0.490704 | 5.4:+13690105 | MS.gene59470:CDS |
| ATGACAGTGGTTTAAAATGG+TGG | 0.494146 | 5.4:+13692171 | MS.gene59470:CDS |
| CCAGTGAAAGAGCAATTACC+TGG | 0.496122 | 5.4:+13689117 | MS.gene59470:CDS |
| ACATATGGAACTACAGATAG+TGG | 0.498392 | 5.4:-13690087 | None:intergenic |
| TTTCAGAACCAAATTTGTGT+TGG | 0.499378 | 5.4:+13691869 | MS.gene59470:CDS |
| TGATGATCTCTTAAAGGGCT+GGG | 0.500886 | 5.4:-13692271 | None:intergenic |
| AATTGCTCTTTCACTGGCTG+TGG | 0.501886 | 5.4:-13689111 | None:intergenic |
| GGATTCCAGCGCGATCAGTT+CGG | 0.507110 | 5.4:-13690593 | None:intergenic |
| TCGGTCATTTATAGACTTCA+CGG | 0.508851 | 5.4:-13690469 | None:intergenic |
| AGTCCAGCGAAAGTTACATA+TGG | 0.513298 | 5.4:-13690102 | None:intergenic |
| AATGCTGCTATGATTGGTAA+AGG | 0.516664 | 5.4:-13691666 | None:intergenic |
| CTGATAATAGAAGGCGGCAC+CGG | 0.517220 | 5.4:-13691008 | None:intergenic |
| GATCTTCATGTCACATATAA+CGG | 0.519170 | 5.4:+13692085 | MS.gene59470:CDS |
| ATGACAATGAGAGGGATTCA+AGG | 0.519356 | 5.4:+13689902 | MS.gene59470:CDS |
| GTGTACTAACGCCATGGAGG+TGG | 0.522538 | 5.4:-13689162 | None:intergenic |
| CAGTAAATAGCACTGCAAAT+CGG | 0.524244 | 5.4:-13690488 | None:intergenic |
| TAGGACTTCCCCATTGGAAA+GGG | 0.527990 | 5.4:-13690787 | None:intergenic |
| CTTCCCCATTGGAAAGGGTA+AGG | 0.533419 | 5.4:-13690782 | None:intergenic |
| TGAAAGTAGGACTTCCCCAT+TGG | 0.535521 | 5.4:-13690793 | None:intergenic |
| TGAATATACAGATCCTTATG+AGG | 0.535943 | 5.4:+13689796 | MS.gene59470:CDS |
| GCTGCCAATGAAGGTGGTGG+TGG | 0.538131 | 5.4:+13689030 | MS.gene59470:CDS |
| TCTTCCTGCAGTATCTTCAT+CGG | 0.544295 | 5.4:+13690436 | MS.gene59470:intron |
| CCTAACATCTCCATTATACA+AGG | 0.547749 | 5.4:-13692204 | None:intergenic |
| TGACAGTGGTTTAAAATGGT+GGG | 0.549048 | 5.4:+13692172 | MS.gene59470:CDS |
| GCTTCCAAAACATTGAAAGT+AGG | 0.550456 | 5.4:-13690806 | None:intergenic |
| ATTTGGTTCTGAAACTGTTG+AGG | 0.556795 | 5.4:-13691860 | None:intergenic |
| TGAACAAGAAAGTCCTAGAT+GGG | 0.558213 | 5.4:+13691956 | MS.gene59470:CDS |
| TCCATATCTTGCAGCAGCAT+AGG | 0.561582 | 5.4:-13690976 | None:intergenic |
| GACACCAAAGCTGCCAATGA+AGG | 0.570835 | 5.4:+13689021 | MS.gene59470:CDS |
| GGACTCGGTCTCTATCAACT+TGG | 0.572049 | 5.4:+13690120 | MS.gene59470:CDS |
| AAAACCATAACAATTAAAGC+AGG | 0.572903 | 5.4:-13690267 | None:intergenic |
| TGACTTGTTGTTATATGCAG+TGG | 0.579646 | 5.4:-13690550 | None:intergenic |
| GAATCCTAACCACCGCTCCA+TGG | 0.579654 | 5.4:+13690610 | MS.gene59470:CDS |
| CTATCAACTTGGTTTCCCAA+TGG | 0.581145 | 5.4:+13690131 | MS.gene59470:CDS |
| TTGTGAGAAATATTGTGGTA+TGG | 0.582535 | 5.4:-13691916 | None:intergenic |
| GTAGGACTTCCCCATTGGAA+AGG | 0.582640 | 5.4:-13690788 | None:intergenic |
| GAACTACAGATAGTGGACTA+AGG | 0.587103 | 5.4:-13690080 | None:intergenic |
| ATTGTTCCTCAAATGGGTGG+AGG | 0.596097 | 5.4:+13689521 | MS.gene59470:CDS |
| GCATTAACAGTCCACCTCCA+TGG | 0.596854 | 5.4:+13689151 | MS.gene59470:CDS |
| AACATGGCTCAAAATGGAGG+TGG | 0.597871 | 5.4:+13688994 | None:intergenic |
| AGGTTTACTATGACAATGAG+AGG | 0.600380 | 5.4:+13689893 | MS.gene59470:CDS |
| AAAAGCTCATTGAGTCTGCA+AGG | 0.601036 | 5.4:-13692248 | None:intergenic |
| AGTTGCCGAACTGATCGCGC+TGG | 0.602623 | 5.4:+13690588 | MS.gene59470:CDS |
| GGTTTACTATGACAATGAGA+GGG | 0.606294 | 5.4:+13689894 | MS.gene59470:CDS |
| AAATATTGTGAGAAATATTG+TGG | 0.606956 | 5.4:-13691921 | None:intergenic |
| ATAATTGTTCCTCAAATGGG+TGG | 0.610258 | 5.4:+13689518 | MS.gene59470:CDS |
| CAGCCGCGGAGCTGGTTGGG+TGG | 0.617485 | 5.4:+13691028 | MS.gene59470:CDS |
| CCGCCTTCTATTATCAGCCG+CGG | 0.618383 | 5.4:+13691014 | MS.gene59470:CDS |
| CAAAACATGGCTCAAAATGG+AGG | 0.619091 | 5.4:+13688991 | None:intergenic |
| AATAGAAGGCGGCACCGGCG+TGG | 0.625499 | 5.4:-13691003 | None:intergenic |
| AATGTAGGCTGAGAAGACTA+GGG | 0.641878 | 5.4:+13689634 | MS.gene59470:intron |
| TTAATCTTACCATGGAGCGG+TGG | 0.643744 | 5.4:-13690619 | None:intergenic |
| AACTTAATCTTACCATGGAG+CGG | 0.649594 | 5.4:-13690622 | None:intergenic |
| AAGATATGGAAGTGCCACGC+CGG | 0.655847 | 5.4:+13690989 | MS.gene59470:CDS |
| AAAGCTGCCAATGAAGGTGG+TGG | 0.665648 | 5.4:+13689027 | MS.gene59470:CDS |
| TTTCCTTACCCTTTCCAATG+GGG | 0.672287 | 5.4:+13690779 | MS.gene59470:CDS |
| CCGCGGCTGATAATAGAAGG+CGG | 0.690209 | 5.4:-13691014 | None:intergenic |
| ACCAAAGCTGCCAATGAAGG+TGG | 0.697056 | 5.4:+13689024 | MS.gene59470:CDS |
| ATACCACCCAACCAGCTCCG+CGG | 0.707287 | 5.4:-13691031 | None:intergenic |
| TAGGTGTACTAACGCCATGG+AGG | 0.753213 | 5.4:-13689165 | None:intergenic |
| GTCATTTATAGACTTCACGG+CGG | 0.795155 | 5.4:-13690466 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAGTATTAATGAACAAAA+TGG | + | chr5.4:13689603-13689622 | MS.gene59470:intron | 15.0% |
| !! | GAAATGAATACAAATAATAT+TGG | - | chr5.4:13691444-13691463 | None:intergenic | 15.0% |
| !! | GCATTATATTGTATATTATT+CGG | + | chr5.4:13691684-13691703 | MS.gene59470:CDS | 15.0% |
| !! | GTAATATTATAATGACTAAA+AGG | - | chr5.4:13690914-13690933 | None:intergenic | 15.0% |
| !!! | AAATTCTAAAACAGAATAAT+GGG | + | chr5.4:13690357-13690376 | MS.gene59470:intron | 15.0% |
| !!! | CTTAACAATATTTGTTAATT+TGG | + | chr5.4:13691793-13691812 | MS.gene59470:intron | 15.0% |
| !!! | TAAATTCTAAAACAGAATAA+TGG | + | chr5.4:13690356-13690375 | MS.gene59470:intron | 15.0% |
| !! | AAATATTGTGAGAAATATTG+TGG | - | chr5.4:13691924-13691943 | None:intergenic | 20.0% |
| !! | TAAGAAGCAAAAAATCAAAA+GGG | - | chr5.4:13690184-13690203 | None:intergenic | 20.0% |
| !! | TAGTAACTATAAGTTAAGAT+AGG | - | chr5.4:13689187-13689206 | None:intergenic | 20.0% |
| !! | TAGTCATTATAATATTACTC+AGG | + | chr5.4:13690916-13690935 | MS.gene59470:intron | 20.0% |
| !! | TTAAGAAGCAAAAAATCAAA+AGG | - | chr5.4:13690185-13690204 | None:intergenic | 20.0% |
| !!! | AACTCTAATTAATTTTGCTA+AGG | - | chr5.4:13690886-13690905 | None:intergenic | 20.0% |
| !!! | TAATTTTGCTAAGGATTTAA+GGG | - | chr5.4:13690877-13690896 | None:intergenic | 20.0% |
| !!! | TCATTCTTGTTTTGATTTTA+GGG | + | chr5.4:13691138-13691157 | MS.gene59470:intron | 20.0% |
| !!! | TTAATTTTGCTAAGGATTTA+AGG | - | chr5.4:13690878-13690897 | None:intergenic | 20.0% |
| !!! | TTCGATTTTTATGTAAATCT+TGG | + | chr5.4:13690018-13690037 | MS.gene59470:intron | 20.0% |
| ! | AAAAAAAGAGTAAAGCAGAA+AGG | - | chr5.4:13691313-13691332 | None:intergenic | 25.0% |
| ! | AAAACCATAACAATTAAAGC+AGG | - | chr5.4:13690270-13690289 | None:intergenic | 25.0% |
| ! | AAAATGACAGTGGTTTAAAA+TGG | + | chr5.4:13692168-13692187 | MS.gene59470:CDS | 25.0% |
| ! | AAAATGGTTTGATTCAATGT+AGG | + | chr5.4:13689619-13689638 | MS.gene59470:intron | 25.0% |
| ! | AACTATAATTGTTCCTCAAA+TGG | + | chr5.4:13689514-13689533 | MS.gene59470:CDS | 25.0% |
| ! | ACATTTCTTCAATCTTTGTT+CGG | + | chr5.4:13689692-13689711 | MS.gene59470:CDS | 25.0% |
| ! | ACCTATAATTTCTATTGTTC+AGG | + | chr5.4:13689760-13689779 | MS.gene59470:CDS | 25.0% |
| ! | ACTATAATTGTTCCTCAAAT+GGG | + | chr5.4:13689515-13689534 | MS.gene59470:CDS | 25.0% |
| ! | ATAGTTTCATTTACCTCATA+AGG | - | chr5.4:13689812-13689831 | None:intergenic | 25.0% |
| ! | ATTTCATAATTTCAGCATCT+TGG | + | chr5.4:13691459-13691478 | MS.gene59470:intron | 25.0% |
| ! | ATTTGAGGAACAATTATAGT+TGG | - | chr5.4:13689515-13689534 | None:intergenic | 25.0% |
| ! | GACTTATAGCCAATAAAATA+CGG | + | chr5.4:13691516-13691535 | MS.gene59470:intron | 25.0% |
| ! | TATGAAACTTAATCTTACCA+TGG | - | chr5.4:13690630-13690649 | None:intergenic | 25.0% |
| ! | TATTTACTGTCACAATTACA+TGG | + | chr5.4:13690502-13690521 | MS.gene59470:CDS | 25.0% |
| ! | TTAATGCAATATTGAATTCC+AGG | - | chr5.4:13689138-13689157 | None:intergenic | 25.0% |
| ! | TTACAAGTTCCAACAAATTA+AGG | - | chr5.4:13689224-13689243 | None:intergenic | 25.0% |
| ! | TTACTAGCATTAACAAAAGT+AGG | + | chr5.4:13691350-13691369 | MS.gene59470:CDS | 25.0% |
| !! | ATGATTTTCTTCTCTGTATT+TGG | + | chr5.4:13691407-13691426 | MS.gene59470:CDS | 25.0% |
| !! | ATTTTTGCTTAAGATTGTAC+TGG | + | chr5.4:13689392-13689411 | MS.gene59470:intron | 25.0% |
| !!! | CTATTGGATTTTTTGGTTTT+TGG | + | chr5.4:13689957-13689976 | MS.gene59470:CDS | 25.0% |
| !!! | GTCATTCTTGTTTTGATTTT+AGG | + | chr5.4:13691137-13691156 | MS.gene59470:intron | 25.0% |
| !!! | TGCTTTACTCTTTTTTTTCA+GGG | + | chr5.4:13691316-13691335 | MS.gene59470:intron | 25.0% |
| !!! | TTAACTTGTGATCTGTTAAA+GGG | + | chr5.4:13691275-13691294 | MS.gene59470:intron | 25.0% |
| !!! | TTCACTTTTCCTTAATTTGT+TGG | + | chr5.4:13689212-13689231 | MS.gene59470:intron | 25.0% |
| !!! | TTCTTTAGTTTCTCTTTTTG+AGG | + | chr5.4:13690847-13690866 | MS.gene59470:CDS | 25.0% |
| AAAAACACACACAAGGAATT+AGG | - | chr5.4:13691231-13691250 | None:intergenic | 30.0% | |
| AAAACACACACAAGGAATTA+GGG | - | chr5.4:13691230-13691249 | None:intergenic | 30.0% | |
| AAACAGTGTTCAATTTATGC+AGG | + | chr5.4:13690750-13690769 | MS.gene59470:intron | 30.0% | |
| AACAGTGTTCAATTTATGCA+GGG | + | chr5.4:13690751-13690770 | MS.gene59470:intron | 30.0% | |
| AATATATAGCTTACCCATCT+AGG | - | chr5.4:13691972-13691991 | None:intergenic | 30.0% | |
| AATCCTCAATTCTTTACCAT+TGG | - | chr5.4:13690150-13690169 | None:intergenic | 30.0% | |
| ACTTCCTGCTTTAATTGTTA+TGG | + | chr5.4:13690263-13690282 | MS.gene59470:CDS | 30.0% | |
| AGAGTAATTCAAATTTCAGC+TGG | + | chr5.4:13691380-13691399 | MS.gene59470:CDS | 30.0% | |
| AGTAACTAGTATGTTGCAAA+AGG | + | chr5.4:13690323-13690342 | MS.gene59470:intron | 30.0% | |
| ATCCTCAATTCTTTACCATT+GGG | - | chr5.4:13690149-13690168 | None:intergenic | 30.0% | |
| CAAAAAATCCAATAGCCATT+TGG | - | chr5.4:13689952-13689971 | None:intergenic | 30.0% | |
| CAATATAATGCTGCTATGAT+TGG | - | chr5.4:13691675-13691694 | None:intergenic | 30.0% | |
| CCAAATCTGTTTAACTAGTA+TGG | + | chr5.4:13690383-13690402 | MS.gene59470:intron | 30.0% | |
| CCATACTAGTTAAACAGATT+TGG | - | chr5.4:13690386-13690405 | None:intergenic | 30.0% | |
| GACATAACATTAGTTATTCC+AGG | - | chr5.4:13691582-13691601 | None:intergenic | 30.0% | |
| GATCTTCATGTCACATATAA+CGG | + | chr5.4:13692085-13692104 | MS.gene59470:CDS | 30.0% | |
| GCCTGAACAATAGAAATTAT+AGG | - | chr5.4:13689764-13689783 | None:intergenic | 30.0% | |
| TATGAACCAACAACTACAAT+TGG | - | chr5.4:13689728-13689747 | None:intergenic | 30.0% | |
| TCAATCTTTGATCATAATGC+AGG | + | chr5.4:13689428-13689447 | MS.gene59470:intron | 30.0% | |
| TGAATATACAGATCCTTATG+AGG | + | chr5.4:13689796-13689815 | MS.gene59470:CDS | 30.0% | |
| TGTTTGTTTGAATTTCCTAG+AGG | + | chr5.4:13689873-13689892 | MS.gene59470:intron | 30.0% | |
| TTCAAGAAAAAACACACACA+AGG | - | chr5.4:13691238-13691257 | None:intergenic | 30.0% | |
| TTCAGAACCAAATTTGTGTT+GGG | + | chr5.4:13691870-13691889 | MS.gene59470:CDS | 30.0% | |
| TTGTGAGAAATATTGTGGTA+TGG | - | chr5.4:13691919-13691938 | None:intergenic | 30.0% | |
| TTTCAGAACCAAATTTGTGT+TGG | + | chr5.4:13691869-13691888 | MS.gene59470:CDS | 30.0% | |
| ! | AAGTCCTACTTTCAATGTTT+TGG | + | chr5.4:13690802-13690821 | MS.gene59470:CDS | 30.0% |
| ! | ATTGGTAGTTTACTAGTTTG+TGG | + | chr5.4:13691483-13691502 | MS.gene59470:intron | 30.0% |
| ! | CATAAGTTCAAGTTTCCAAA+TGG | + | chr5.4:13689934-13689953 | MS.gene59470:CDS | 30.0% |
| ! | TAATAATCTATGTGCTGTTG+TGG | + | chr5.4:13691747-13691766 | MS.gene59470:intron | 30.0% |
| ! | TCCAAATTTTCCTGTTTCAA+GGG | - | chr5.4:13691628-13691647 | None:intergenic | 30.0% |
| ! | TGTTTGTGACCGTATTTTAT+TGG | - | chr5.4:13691528-13691547 | None:intergenic | 30.0% |
| !! | GTTAACTTGTGATCTGTTAA+AGG | + | chr5.4:13691274-13691293 | MS.gene59470:intron | 30.0% |
| !!! | CAAATGGCTATTGGATTTTT+TGG | + | chr5.4:13689950-13689969 | MS.gene59470:CDS | 30.0% |
| !!! | CTGCTTTACTCTTTTTTTTC+AGG | + | chr5.4:13691315-13691334 | MS.gene59470:intron | 30.0% |
| !!! | TGCATTGGTTGCATTAATTT+TGG | + | chr5.4:13692112-13692131 | MS.gene59470:CDS | 30.0% |
| !!! | TGTGTTTTTTCTTGAATGCA+TGG | + | chr5.4:13691242-13691261 | MS.gene59470:intron | 30.0% |
| !!! | TTGTTTTGATTTTAGGGAGT+AGG | + | chr5.4:13691144-13691163 | MS.gene59470:intron | 30.0% |
| !!! | TTTTTTTTCAGGGAAAATGC+TGG | + | chr5.4:13691326-13691345 | MS.gene59470:intron | 30.0% |
| AAAACGATCAAACATGCACT+AGG | - | chr5.4:13690409-13690428 | None:intergenic | 35.0% | |
| AACTTAATCTTACCATGGAG+CGG | - | chr5.4:13690625-13690644 | None:intergenic | 35.0% | |
| AATGCTGCTATGATTGGTAA+AGG | - | chr5.4:13691669-13691688 | None:intergenic | 35.0% | |
| ACATATGGAACTACAGATAG+TGG | - | chr5.4:13690090-13690109 | None:intergenic | 35.0% | |
| AGGTTTACTATGACAATGAG+AGG | + | chr5.4:13689893-13689912 | MS.gene59470:CDS | 35.0% | |
| ATAATTGTTCCTCAAATGGG+TGG | + | chr5.4:13689518-13689537 | MS.gene59470:CDS | 35.0% | |
| ATGAACAAGAAAGTCCTAGA+TGG | + | chr5.4:13691955-13691974 | MS.gene59470:CDS | 35.0% | |
| CAGTAAATAGCACTGCAAAT+CGG | - | chr5.4:13690491-13690510 | None:intergenic | 35.0% | |
| CATTGTCATAGTAAACCTCT+AGG | - | chr5.4:13689891-13689910 | None:intergenic | 35.0% | |
| CCTAACATCTCCATTATACA+AGG | - | chr5.4:13692207-13692226 | None:intergenic | 35.0% | |
| GAGAAGTTCACCTTGTATAA+TGG | + | chr5.4:13692194-13692213 | MS.gene59470:CDS | 35.0% | |
| GCTTCCAAAACATTGAAAGT+AGG | - | chr5.4:13690809-13690828 | None:intergenic | 35.0% | |
| GGTTTACTATGACAATGAGA+GGG | + | chr5.4:13689894-13689913 | MS.gene59470:CDS | 35.0% | |
| TAATTTCAGCATCTTGGCAT+TGG | + | chr5.4:13691465-13691484 | MS.gene59470:intron | 35.0% | |
| TCAAGTTTCCAAATGGCTAT+TGG | + | chr5.4:13689941-13689960 | MS.gene59470:CDS | 35.0% | |
| TCGGTCATTTATAGACTTCA+CGG | - | chr5.4:13690472-13690491 | None:intergenic | 35.0% | |
| TGAACAAGAAAGTCCTAGAT+GGG | + | chr5.4:13691956-13691975 | MS.gene59470:CDS | 35.0% | |
| TTCCCAATGGTAAAGAATTG+AGG | + | chr5.4:13690144-13690163 | MS.gene59470:intron | 35.0% | |
| ! | ACTAGTTTGTGGTTGTCTAT+AGG | + | chr5.4:13691494-13691513 | MS.gene59470:intron | 35.0% |
| ! | ATGACAGTGGTTTAAAATGG+TGG | + | chr5.4:13692171-13692190 | MS.gene59470:CDS | 35.0% |
| ! | ATTTTCCTTACCCTTTCCAA+TGG | + | chr5.4:13690777-13690796 | MS.gene59470:CDS | 35.0% |
| ! | CCAAATTTTCCTGTTTCAAG+GGG | - | chr5.4:13691627-13691646 | None:intergenic | 35.0% |
| ! | CCTTGTATAATGGAGATGTT+AGG | + | chr5.4:13692204-13692223 | MS.gene59470:CDS | 35.0% |
| ! | CTCCAAATTTTCCTGTTTCA+AGG | - | chr5.4:13691629-13691648 | None:intergenic | 35.0% |
| ! | TGACAGTGGTTTAAAATGGT+GGG | + | chr5.4:13692172-13692191 | MS.gene59470:CDS | 35.0% |
| ! | TGTTATGGTTTTCATCTCAC+AGG | + | chr5.4:13690278-13690297 | MS.gene59470:CDS | 35.0% |
| ! | TTTTCCTTACCCTTTCCAAT+GGG | + | chr5.4:13690778-13690797 | MS.gene59470:CDS | 35.0% |
| ! | TTTTCTTGAATGCATGGTAG+AGG | + | chr5.4:13691248-13691267 | MS.gene59470:intron | 35.0% |
| !! | ATTTGGTTCTGAAACTGTTG+AGG | - | chr5.4:13691863-13691882 | None:intergenic | 35.0% |
| !! | TGACTTGTTGTTATATGCAG+TGG | - | chr5.4:13690553-13690572 | None:intergenic | 35.0% |
| !! | TTGTTATTTCCCCTTGAAAC+AGG | + | chr5.4:13691615-13691634 | MS.gene59470:intron | 35.0% |
| !! | TTGTTTTACTTGCAGTACAC+TGG | + | chr5.4:13690948-13690967 | MS.gene59470:intron | 35.0% |
| !! | TTTGGAAGCTTTTGCTATGA+TGG | + | chr5.4:13690820-13690839 | MS.gene59470:CDS | 35.0% |
| AAAAGCTCATTGAGTCTGCA+AGG | - | chr5.4:13692251-13692270 | None:intergenic | 40.0% | |
| AACTGTTGAGGTTACAGAAC+TGG | - | chr5.4:13691851-13691870 | None:intergenic | 40.0% | |
| AATGTAGGCTGAGAAGACTA+GGG | + | chr5.4:13689634-13689653 | MS.gene59470:intron | 40.0% | |
| ACATATAACGGTTGCTGCAT+TGG | + | chr5.4:13692097-13692116 | MS.gene59470:CDS | 40.0% | |
| AGTCCAGCGAAAGTTACATA+TGG | - | chr5.4:13690105-13690124 | None:intergenic | 40.0% | |
| ATGACAATGAGAGGGATTCA+AGG | + | chr5.4:13689902-13689921 | MS.gene59470:CDS | 40.0% | |
| CAGCATTACCTTCTAACTCT+AGG | + | chr5.4:13689473-13689492 | MS.gene59470:CDS | 40.0% | |
| CCCCTTGAAACAGGAAAATT+TGG | + | chr5.4:13691624-13691643 | MS.gene59470:intron | 40.0% | |
| CGATTGCCAATTGTAGTTGT+TGG | + | chr5.4:13689719-13689738 | MS.gene59470:CDS | 40.0% | |
| CTATCAACTTGGTTTCCCAA+TGG | + | chr5.4:13690131-13690150 | MS.gene59470:CDS | 40.0% | |
| CTGTAATGCCTAGAGTTAGA+AGG | - | chr5.4:13689484-13689503 | None:intergenic | 40.0% | |
| CTTGCGAAATGCGTTGAAAT+TGG | + | chr5.4:13690240-13690259 | MS.gene59470:CDS | 40.0% | |
| GATGCAGCTAAAAATGACAG+TGG | + | chr5.4:13692158-13692177 | MS.gene59470:CDS | 40.0% | |
| GTCATTTATAGACTTCACGG+CGG | - | chr5.4:13690469-13690488 | None:intergenic | 40.0% | |
| GTTCCATATGTAACTTTCGC+TGG | + | chr5.4:13690099-13690118 | MS.gene59470:CDS | 40.0% | |
| TATACCGATGAAGATACTGC+AGG | - | chr5.4:13690443-13690462 | None:intergenic | 40.0% | |
| TATGTAACTTTCGCTGGACT+CGG | + | chr5.4:13690105-13690124 | MS.gene59470:CDS | 40.0% | |
| TCTTCCTGCAGTATCTTCAT+CGG | + | chr5.4:13690436-13690455 | MS.gene59470:intron | 40.0% | |
| TGAGAAGCCCAACACAAATT+TGG | - | chr5.4:13691880-13691899 | None:intergenic | 40.0% | |
| TTGGGCTTCTCATTCTTCTT+AGG | + | chr5.4:13691888-13691907 | MS.gene59470:CDS | 40.0% | |
| TTTCCTTACCCTTTCCAATG+GGG | + | chr5.4:13690779-13690798 | MS.gene59470:CDS | 40.0% | |
| !! | GAACTACAGATAGTGGACTA+AGG | - | chr5.4:13690083-13690102 | None:intergenic | 40.0% |
| !! | GCTTTGTTTAGTGGCATGTT+TGG | + | chr5.4:13691168-13691187 | MS.gene59470:CDS | 40.0% |
| !! | GTTTTTGGAGAAATGCTGTC+AGG | + | chr5.4:13689972-13689991 | MS.gene59470:CDS | 40.0% |
| AGATAGGTGTACTAACGCCA+TGG | - | chr5.4:13689171-13689190 | None:intergenic | 45.0% | |
| ATTGTTCCTCAAATGGGTGG+AGG | + | chr5.4:13689521-13689540 | MS.gene59470:CDS | 45.0% | |
| CAATGTAGGCTGAGAAGACT+AGG | + | chr5.4:13689633-13689652 | MS.gene59470:intron | 45.0% | |
| CAGACACTTCTGTTTGTGTC+TGG | + | chr5.4:13689662-13689681 | MS.gene59470:CDS | 45.0% | |
| CCAGGTAATTGCTCTTTCAC+TGG | - | chr5.4:13689120-13689139 | None:intergenic | 45.0% | |
| CCAGTGAAAGAGCAATTACC+TGG | + | chr5.4:13689117-13689136 | MS.gene59470:CDS | 45.0% | |
| GCAGGTCAAGCAGTGATATT+GGG | + | chr5.4:13689446-13689465 | MS.gene59470:intron | 45.0% | |
| GGCATGTTTGGTTGTGTAAC+TGG | + | chr5.4:13691180-13691199 | MS.gene59470:CDS | 45.0% | |
| TAGGACTTCCCCATTGGAAA+GGG | - | chr5.4:13690790-13690809 | None:intergenic | 45.0% | |
| TATTCCAGGTGTCTGTGTGT+CGG | - | chr5.4:13691568-13691587 | None:intergenic | 45.0% | |
| TCCATATCTTGCAGCAGCAT+AGG | - | chr5.4:13690979-13690998 | None:intergenic | 45.0% | |
| TCCTATGCTGCTGCAAGATA+TGG | + | chr5.4:13690975-13690994 | MS.gene59470:CDS | 45.0% | |
| TGAAAGTAGGACTTCCCCAT+TGG | - | chr5.4:13690796-13690815 | None:intergenic | 45.0% | |
| TGCAGGTCAAGCAGTGATAT+TGG | + | chr5.4:13689445-13689464 | MS.gene59470:intron | 45.0% | |
| TGGAACTATGTAGCTTCTGC+TGG | + | chr5.4:13691813-13691832 | MS.gene59470:intron | 45.0% | |
| TTAATCTTACCATGGAGCGG+TGG | - | chr5.4:13690622-13690641 | None:intergenic | 45.0% | |
| ! | AATTGCTCTTTCACTGGCTG+TGG | - | chr5.4:13689114-13689133 | None:intergenic | 45.0% |
| ! | TATGTAGCTTCTGCTGGTCT+TGG | + | chr5.4:13691819-13691838 | MS.gene59470:intron | 45.0% |
| !! | GGAGTAGGTGCTTTGTTTAG+TGG | + | chr5.4:13691159-13691178 | MS.gene59470:CDS | 45.0% |
| AAAGCTGCCAATGAAGGTGG+TGG | + | chr5.4:13689027-13689046 | MS.gene59470:CDS | 50.0% | |
| ACATCTCCTCCACCCATTTG+AGG | - | chr5.4:13689530-13689549 | None:intergenic | 50.0% | |
| ACCAAAGCTGCCAATGAAGG+TGG | + | chr5.4:13689024-13689043 | MS.gene59470:CDS | 50.0% | |
| ACCACCTTCATTGGCAGCTT+TGG | - | chr5.4:13689028-13689047 | None:intergenic | 50.0% | |
| CTGATAATAGAAGGCGGCAC+CGG | - | chr5.4:13691011-13691030 | None:intergenic | 50.0% | |
| CTTCCCCATTGGAAAGGGTA+AGG | - | chr5.4:13690785-13690804 | None:intergenic | 50.0% | |
| GACACCAAAGCTGCCAATGA+AGG | + | chr5.4:13689021-13689040 | MS.gene59470:CDS | 50.0% | |
| GCATTAACAGTCCACCTCCA+TGG | + | chr5.4:13689151-13689170 | MS.gene59470:CDS | 50.0% | |
| GGTGCTAAAAATGCAGGTGG+TGG | + | chr5.4:13689060-13689079 | MS.gene59470:CDS | 50.0% | |
| GTAGGACTTCCCCATTGGAA+AGG | - | chr5.4:13690791-13690810 | None:intergenic | 50.0% | |
| TACGGTCACAAACACGCACA+CGG | + | chr5.4:13691534-13691553 | MS.gene59470:intron | 50.0% | |
| TAGGTGTACTAACGCCATGG+AGG | - | chr5.4:13689168-13689187 | None:intergenic | 50.0% | |
| ! | GGACTCGGTCTCTATCAACT+TGG | + | chr5.4:13690120-13690139 | MS.gene59470:CDS | 50.0% |
| !! | AAGATATGGAAGTGCCACGC+CGG | + | chr5.4:13690989-13691008 | MS.gene59470:CDS | 50.0% |
| ACGGTCACAAACACGCACAC+GGG | + | chr5.4:13691535-13691554 | MS.gene59470:intron | 55.0% | |
| CCGCCTTCTATTATCAGCCG+CGG | + | chr5.4:13691014-13691033 | MS.gene59470:CDS | 55.0% | |
| CCGCGGCTGATAATAGAAGG+CGG | - | chr5.4:13691017-13691036 | None:intergenic | 55.0% | |
| CTTACCATGGAGCGGTGGTT+AGG | - | chr5.4:13690617-13690636 | None:intergenic | 55.0% | |
| GAATCCTAACCACCGCTCCA+TGG | + | chr5.4:13690610-13690629 | MS.gene59470:CDS | 55.0% | |
| GCTCCGCGGCTGATAATAGA+AGG | - | chr5.4:13691020-13691039 | None:intergenic | 55.0% | |
| GGATTCCAGCGCGATCAGTT+CGG | - | chr5.4:13690596-13690615 | None:intergenic | 55.0% | |
| GTGTACTAACGCCATGGAGG+TGG | - | chr5.4:13689165-13689184 | None:intergenic | 55.0% | |
| TCTATTATCAGCCGCGGAGC+TGG | + | chr5.4:13691020-13691039 | MS.gene59470:CDS | 55.0% | |
| ! | GGCGGTGCTAAAAATGCAGG+TGG | + | chr5.4:13689057-13689076 | MS.gene59470:CDS | 55.0% |
| ! | TCTTTCACTGGCTGTGGTGC+TGG | - | chr5.4:13689108-13689127 | None:intergenic | 55.0% |
| !! | AATGAAGGTGGTGGTGGAGG+CGG | + | chr5.4:13689036-13689055 | MS.gene59470:CDS | 55.0% |
| AGCGCGATCAGTTCGGCAAC+TGG | - | chr5.4:13690589-13690608 | None:intergenic | 60.0% | |
| AGTTGCCGAACTGATCGCGC+TGG | + | chr5.4:13690588-13690607 | MS.gene59470:CDS | 60.0% | |
| ATACCACCCAACCAGCTCCG+CGG | - | chr5.4:13691034-13691053 | None:intergenic | 60.0% | |
| CACACCGACACACAGACACC+TGG | + | chr5.4:13691561-13691580 | MS.gene59470:intron | 60.0% | |
| GCCTCCACCACCACCTTCAT+TGG | - | chr5.4:13689037-13689056 | None:intergenic | 60.0% | |
| TATCAGCCGCGGAGCTGGTT+GGG | + | chr5.4:13691025-13691044 | MS.gene59470:CDS | 60.0% | |
| TTATCAGCCGCGGAGCTGGT+TGG | + | chr5.4:13691024-13691043 | MS.gene59470:CDS | 60.0% | |
| ! | GCTGCCAATGAAGGTGGTGG+TGG | + | chr5.4:13689030-13689049 | MS.gene59470:CDS | 60.0% |
| ! | GGCGGCGGTGCTAAAAATGC+AGG | + | chr5.4:13689054-13689073 | MS.gene59470:CDS | 60.0% |
| !! | GCCAATGAAGGTGGTGGTGG+AGG | + | chr5.4:13689033-13689052 | MS.gene59470:CDS | 60.0% |
| !! | AATAGAAGGCGGCACCGGCG+TGG | - | chr5.4:13691006-13691025 | None:intergenic | 65.0% |
| !! | GAAGGTGGTGGTGGAGGCGG+CGG | + | chr5.4:13689039-13689058 | MS.gene59470:CDS | 70.0% |
| CAGCCGCGGAGCTGGTTGGG+TGG | + | chr5.4:13691028-13691047 | MS.gene59470:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 13688997 | 13692283 | 13688997 | ID=MS.gene59470 |
| chr5.4 | mRNA | 13688997 | 13692283 | 13688997 | ID=MS.gene59470.t1;Parent=MS.gene59470 |
| chr5.4 | exon | 13688997 | 13689174 | 13688997 | ID=MS.gene59470.t1.exon1;Parent=MS.gene59470.t1 |
| chr5.4 | CDS | 13688997 | 13689174 | 13688997 | ID=cds.MS.gene59470.t1;Parent=MS.gene59470.t1 |
| chr5.4 | exon | 13689450 | 13689547 | 13689450 | ID=MS.gene59470.t1.exon2;Parent=MS.gene59470.t1 |
| chr5.4 | CDS | 13689450 | 13689547 | 13689450 | ID=cds.MS.gene59470.t1;Parent=MS.gene59470.t1 |
| chr5.4 | exon | 13689641 | 13689817 | 13689641 | ID=MS.gene59470.t1.exon3;Parent=MS.gene59470.t1 |
| chr5.4 | CDS | 13689641 | 13689817 | 13689641 | ID=cds.MS.gene59470.t1;Parent=MS.gene59470.t1 |
| chr5.4 | exon | 13689893 | 13689993 | 13689893 | ID=MS.gene59470.t1.exon4;Parent=MS.gene59470.t1 |
| chr5.4 | CDS | 13689893 | 13689993 | 13689893 | ID=cds.MS.gene59470.t1;Parent=MS.gene59470.t1 |
| chr5.4 | exon | 13690077 | 13690152 | 13690077 | ID=MS.gene59470.t1.exon5;Parent=MS.gene59470.t1 |
| chr5.4 | CDS | 13690077 | 13690152 | 13690077 | ID=cds.MS.gene59470.t1;Parent=MS.gene59470.t1 |
| chr5.4 | exon | 13690240 | 13690299 | 13690240 | ID=MS.gene59470.t1.exon6;Parent=MS.gene59470.t1 |
| chr5.4 | CDS | 13690240 | 13690299 | 13690240 | ID=cds.MS.gene59470.t1;Parent=MS.gene59470.t1 |
| chr5.4 | exon | 13690447 | 13690631 | 13690447 | ID=MS.gene59470.t1.exon7;Parent=MS.gene59470.t1 |
| chr5.4 | CDS | 13690447 | 13690631 | 13690447 | ID=cds.MS.gene59470.t1;Parent=MS.gene59470.t1 |
| chr5.4 | exon | 13690772 | 13690868 | 13690772 | ID=MS.gene59470.t1.exon8;Parent=MS.gene59470.t1 |
| chr5.4 | CDS | 13690772 | 13690868 | 13690772 | ID=cds.MS.gene59470.t1;Parent=MS.gene59470.t1 |
| chr5.4 | exon | 13690963 | 13691049 | 13690963 | ID=MS.gene59470.t1.exon9;Parent=MS.gene59470.t1 |
| chr5.4 | CDS | 13690963 | 13691049 | 13690963 | ID=cds.MS.gene59470.t1;Parent=MS.gene59470.t1 |
| chr5.4 | exon | 13691159 | 13691217 | 13691159 | ID=MS.gene59470.t1.exon10;Parent=MS.gene59470.t1 |
| chr5.4 | CDS | 13691159 | 13691217 | 13691159 | ID=cds.MS.gene59470.t1;Parent=MS.gene59470.t1 |
| chr5.4 | exon | 13691337 | 13691428 | 13691337 | ID=MS.gene59470.t1.exon11;Parent=MS.gene59470.t1 |
| chr5.4 | CDS | 13691337 | 13691428 | 13691337 | ID=cds.MS.gene59470.t1;Parent=MS.gene59470.t1 |
| chr5.4 | exon | 13691637 | 13691714 | 13691637 | ID=MS.gene59470.t1.exon12;Parent=MS.gene59470.t1 |
| chr5.4 | CDS | 13691637 | 13691714 | 13691637 | ID=cds.MS.gene59470.t1;Parent=MS.gene59470.t1 |
| chr5.4 | exon | 13691826 | 13691977 | 13691826 | ID=MS.gene59470.t1.exon13;Parent=MS.gene59470.t1 |
| chr5.4 | CDS | 13691826 | 13691977 | 13691826 | ID=cds.MS.gene59470.t1;Parent=MS.gene59470.t1 |
| chr5.4 | exon | 13692065 | 13692283 | 13692065 | ID=MS.gene59470.t1.exon14;Parent=MS.gene59470.t1 |
| chr5.4 | CDS | 13692065 | 13692283 | 13692065 | ID=cds.MS.gene59470.t1;Parent=MS.gene59470.t1 |
| Gene Sequence |
| Protein sequence |
