Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59541.t1 | XP_024627594.1 | 89.3 | 234 | 24 | 1 | 6 | 239 | 4 | 236 | 6.30E-106 | 393.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59541.t1 | O81223 | 59.6 | 218 | 82 | 1 | 19 | 236 | 3 | 214 | 1.9e-66 | 253.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59541.t1 | G8A2Y4 | 89.3 | 234 | 24 | 1 | 6 | 239 | 4 | 236 | 4.5e-106 | 393.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04918 | MS.gene59541 | 0.806999 | 6.26E-50 | -1.69E-46 |
| MS.gene04920 | MS.gene59541 | 0.807265 | 5.50E-50 | -1.69E-46 |
| MS.gene049254 | MS.gene59541 | 0.825474 | 4.60E-54 | -1.69E-46 |
| MS.gene049499 | MS.gene59541 | 0.815597 | 8.52E-52 | -1.69E-46 |
| MS.gene05188 | MS.gene59541 | 0.800804 | 1.21E-48 | -1.69E-46 |
| MS.gene052582 | MS.gene59541 | 0.808113 | 3.63E-50 | -1.69E-46 |
| MS.gene052584 | MS.gene59541 | 0.818815 | 1.61E-52 | -1.69E-46 |
| MS.gene053226 | MS.gene59541 | 0.812362 | 4.40E-51 | -1.69E-46 |
| MS.gene05365 | MS.gene59541 | 0.806215 | 9.17E-50 | -1.69E-46 |
| MS.gene053963 | MS.gene59541 | 0.815131 | 1.08E-51 | -1.69E-46 |
| MS.gene054222 | MS.gene59541 | 0.813463 | 2.53E-51 | -1.69E-46 |
| MS.gene054479 | MS.gene59541 | 0.805469 | 1.31E-49 | -1.69E-46 |
| MS.gene054576 | MS.gene59541 | 0.803741 | 3.02E-49 | -1.69E-46 |
| MS.gene056174 | MS.gene59541 | 0.80074 | 1.25E-48 | -1.69E-46 |
| MS.gene05689 | MS.gene59541 | 0.81575 | 7.88E-52 | -1.69E-46 |
| MS.gene056986 | MS.gene59541 | 0.80893 | 2.43E-50 | -1.69E-46 |
| MS.gene057102 | MS.gene59541 | 0.813963 | 1.96E-51 | -1.69E-46 |
| MS.gene057208 | MS.gene59541 | 0.812096 | 5.03E-51 | -1.69E-46 |
| MS.gene058037 | MS.gene59541 | 0.809059 | 2.28E-50 | -1.69E-46 |
| MS.gene058159 | MS.gene59541 | 0.807915 | 4.00E-50 | -1.69E-46 |
| MS.gene058498 | MS.gene59541 | 0.800315 | 1.53E-48 | -1.69E-46 |
| MS.gene058783 | MS.gene59541 | 0.800456 | 1.43E-48 | -1.69E-46 |
| MS.gene05985 | MS.gene59541 | -0.81598 | 7.00E-52 | -1.69E-46 |
| MS.gene059935 | MS.gene59541 | 0.842479 | 2.52E-58 | -1.69E-46 |
| MS.gene06011 | MS.gene59541 | 0.801253 | 9.83E-49 | -1.69E-46 |
| MS.gene060365 | MS.gene59541 | 0.823861 | 1.10E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59541.t1 | MTR_8g027620 | 93.724 | 239 | 12 | 2 | 1 | 239 | 1 | 236 | 6.11e-160 | 445 |
| MS.gene59541.t1 | MTR_3g091440 | 69.430 | 193 | 59 | 0 | 45 | 237 | 20 | 212 | 2.03e-94 | 276 |
| MS.gene59541.t1 | MTR_3g091440 | 66.842 | 190 | 63 | 0 | 48 | 237 | 24 | 213 | 1.80e-88 | 261 |
| MS.gene59541.t1 | MTR_8g099575 | 62.500 | 192 | 72 | 0 | 45 | 236 | 19 | 210 | 2.17e-84 | 250 |
| MS.gene59541.t1 | MTR_4g099210 | 57.068 | 191 | 82 | 0 | 46 | 236 | 20 | 210 | 7.37e-77 | 231 |
| MS.gene59541.t1 | MTR_4g134250 | 54.922 | 193 | 87 | 0 | 45 | 237 | 35 | 227 | 3.42e-75 | 227 |
| MS.gene59541.t1 | MTR_1g016430 | 57.592 | 191 | 81 | 0 | 44 | 234 | 57 | 247 | 6.94e-75 | 227 |
| MS.gene59541.t1 | MTR_3g060730 | 55.208 | 192 | 86 | 0 | 46 | 237 | 35 | 226 | 1.31e-74 | 226 |
| MS.gene59541.t1 | MTR_5g096420 | 55.208 | 192 | 86 | 0 | 46 | 237 | 35 | 226 | 5.23e-74 | 224 |
| MS.gene59541.t1 | MTR_1g016430 | 57.459 | 181 | 77 | 0 | 54 | 234 | 1 | 181 | 1.71e-72 | 219 |
| MS.gene59541.t1 | MTR_2g027500 | 49.315 | 219 | 101 | 1 | 19 | 237 | 16 | 224 | 2.83e-72 | 220 |
| MS.gene59541.t1 | MTR_8g099570 | 52.332 | 193 | 92 | 0 | 45 | 237 | 61 | 253 | 6.92e-72 | 220 |
| MS.gene59541.t1 | MTR_3g060730 | 54.891 | 184 | 83 | 0 | 54 | 237 | 5 | 188 | 1.15e-71 | 217 |
| MS.gene59541.t1 | MTR_1g016430 | 57.459 | 181 | 77 | 0 | 54 | 234 | 99 | 279 | 2.46e-71 | 219 |
| MS.gene59541.t1 | MTR_2g027440 | 53.226 | 186 | 87 | 0 | 51 | 236 | 43 | 228 | 3.01e-67 | 207 |
| MS.gene59541.t1 | MTR_2g027480 | 52.688 | 186 | 88 | 0 | 51 | 236 | 43 | 228 | 1.15e-65 | 203 |
| MS.gene59541.t1 | MTR_3g091440 | 71.739 | 138 | 39 | 0 | 45 | 182 | 20 | 157 | 5.46e-65 | 199 |
| MS.gene59541.t1 | MTR_8g016170 | 52.083 | 192 | 92 | 0 | 47 | 238 | 66 | 257 | 6.69e-64 | 200 |
| MS.gene59541.t1 | MTR_2g027520 | 49.741 | 193 | 97 | 0 | 47 | 239 | 41 | 233 | 1.39e-63 | 198 |
| MS.gene59541.t1 | MTR_5g013560 | 49.215 | 191 | 86 | 1 | 46 | 236 | 19 | 198 | 8.53e-60 | 187 |
| MS.gene59541.t1 | MTR_8g016170 | 54.070 | 172 | 79 | 0 | 47 | 218 | 47 | 218 | 9.49e-59 | 185 |
| MS.gene59541.t1 | MTR_4g113505 | 45.109 | 184 | 101 | 0 | 53 | 236 | 6 | 189 | 9.66e-55 | 176 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59541.t1 | AT5G24270 | 59.633 | 218 | 82 | 1 | 19 | 236 | 3 | 214 | 1.14e-89 | 264 |
| MS.gene59541.t1 | AT5G24270 | 59.633 | 218 | 82 | 1 | 19 | 236 | 3 | 214 | 1.14e-89 | 264 |
| MS.gene59541.t1 | AT5G24270 | 59.633 | 218 | 82 | 1 | 19 | 236 | 3 | 214 | 1.14e-89 | 264 |
| MS.gene59541.t1 | AT5G24270 | 63.441 | 186 | 68 | 0 | 51 | 236 | 4 | 189 | 5.22e-84 | 249 |
| MS.gene59541.t1 | AT1G64480 | 60.733 | 191 | 75 | 0 | 46 | 236 | 24 | 214 | 2.43e-79 | 238 |
| MS.gene59541.t1 | AT1G64480 | 60.733 | 191 | 75 | 0 | 46 | 236 | 24 | 214 | 2.43e-79 | 238 |
| MS.gene59541.t1 | AT1G64480 | 60.733 | 191 | 75 | 0 | 46 | 236 | 24 | 214 | 2.43e-79 | 238 |
| MS.gene59541.t1 | AT4G33000 | 58.421 | 190 | 79 | 0 | 47 | 236 | 57 | 246 | 1.99e-75 | 229 |
| MS.gene59541.t1 | AT4G33000 | 58.421 | 190 | 79 | 0 | 47 | 236 | 67 | 256 | 4.37e-75 | 228 |
| MS.gene59541.t1 | AT5G47100 | 56.316 | 190 | 83 | 0 | 47 | 236 | 21 | 210 | 3.37e-74 | 224 |
| MS.gene59541.t1 | AT4G17615 | 55.263 | 190 | 85 | 0 | 47 | 236 | 21 | 210 | 7.14e-74 | 224 |
| MS.gene59541.t1 | AT4G17615 | 55.263 | 190 | 85 | 0 | 47 | 236 | 21 | 210 | 7.14e-74 | 224 |
| MS.gene59541.t1 | AT4G17615 | 55.263 | 190 | 85 | 0 | 47 | 236 | 21 | 210 | 7.14e-74 | 224 |
| MS.gene59541.t1 | AT4G26570 | 54.167 | 192 | 88 | 0 | 46 | 237 | 35 | 226 | 1.06e-73 | 224 |
| MS.gene59541.t1 | AT5G24270 | 62.733 | 161 | 60 | 0 | 76 | 236 | 7 | 167 | 4.61e-73 | 220 |
| MS.gene59541.t1 | AT5G55990 | 54.167 | 192 | 88 | 0 | 46 | 237 | 35 | 226 | 2.41e-72 | 220 |
| MS.gene59541.t1 | AT5G55990 | 54.167 | 192 | 88 | 0 | 46 | 237 | 35 | 226 | 2.41e-72 | 220 |
| MS.gene59541.t1 | AT4G26570 | 53.061 | 196 | 88 | 1 | 46 | 237 | 35 | 230 | 1.53e-71 | 218 |
| MS.gene59541.t1 | AT1G64480 | 61.272 | 173 | 67 | 0 | 46 | 218 | 24 | 196 | 6.62e-71 | 216 |
| MS.gene59541.t1 | AT4G17615 | 55.682 | 176 | 78 | 0 | 47 | 222 | 21 | 196 | 2.81e-66 | 206 |
| MS.gene59541.t1 | AT4G01420 | 48.744 | 199 | 102 | 0 | 31 | 229 | 4 | 202 | 6.43e-63 | 195 |
| MS.gene59541.t1 | AT4G16350 | 50.777 | 193 | 91 | 1 | 47 | 239 | 34 | 222 | 4.23e-62 | 194 |
| MS.gene59541.t1 | AT4G16350 | 50.777 | 193 | 91 | 1 | 47 | 239 | 34 | 222 | 4.23e-62 | 194 |
| MS.gene59541.t1 | AT4G17615 | 54.140 | 157 | 72 | 0 | 80 | 236 | 12 | 168 | 7.49e-60 | 186 |
| MS.gene59541.t1 | AT4G01420 | 48.936 | 188 | 96 | 0 | 31 | 218 | 4 | 191 | 4.06e-59 | 185 |
| MS.gene59541.t1 | AT4G26560 | 45.789 | 190 | 90 | 1 | 61 | 237 | 25 | 214 | 1.36e-55 | 177 |
| MS.gene59541.t1 | AT5G47100 | 52.899 | 138 | 65 | 0 | 47 | 184 | 21 | 158 | 1.83e-48 | 157 |
| MS.gene59541.t1 | AT4G33000 | 55.714 | 140 | 62 | 0 | 47 | 186 | 57 | 196 | 5.49e-48 | 157 |
| MS.gene59541.t1 | AT4G33000 | 56.618 | 136 | 59 | 0 | 47 | 182 | 57 | 192 | 7.46e-48 | 157 |
| MS.gene59541.t1 | AT4G33000 | 56.618 | 136 | 59 | 0 | 47 | 182 | 57 | 192 | 7.46e-48 | 157 |
| MS.gene59541.t1 | AT4G33000 | 56.818 | 88 | 38 | 0 | 47 | 134 | 57 | 144 | 8.29e-26 | 99.0 |
Find 36 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTCTGCTTGAGGAGCTTT+AGG | 0.234896 | 8.4:-68701949 | None:intergenic |
| TTCTGCGTTCAGCATAAAAC+TGG | 0.307181 | 8.4:-68702665 | None:intergenic |
| AAAAGTAGCAGAAAATATTA+TGG | 0.327214 | 8.4:+68700517 | MS.gene59541:CDS |
| GGAGATGGTGTTGATGGTTT+TGG | 0.329380 | 8.4:+68702273 | MS.gene59541:CDS |
| TAAATTCGCCAAACTCTATA+TGG | 0.330475 | 8.4:-68701903 | None:intergenic |
| AACAACGGCCATATAGAGTT+TGG | 0.408503 | 8.4:+68701895 | MS.gene59541:CDS |
| GGCGAATTTATCAGATCCTT+GGG | 0.409624 | 8.4:+68701916 | MS.gene59541:CDS |
| TTATATGACTTGAGGCATAC+TGG | 0.414238 | 8.4:+68702137 | MS.gene59541:CDS |
| TGGCGAATTTATCAGATCCT+TGG | 0.418944 | 8.4:+68701915 | MS.gene59541:CDS |
| GTTGAAGGAGATGGTGTTGA+TGG | 0.420723 | 8.4:+68702267 | MS.gene59541:intron |
| GTCATGTTCTTGAGTAATGA+TGG | 0.435791 | 8.4:-68702520 | None:intergenic |
| AAACTACGAGTGTGATTCTT+CGG | 0.440928 | 8.4:-68702689 | None:intergenic |
| CTTATCTTTGCCAACTTCAC+AGG | 0.446985 | 8.4:-68700546 | None:intergenic |
| TTTAAAACTTACATTAGATA+AGG | 0.469690 | 8.4:-68702547 | None:intergenic |
| GAGAGAGGTGGAAATCTTGA+AGG | 0.495718 | 8.4:+68701207 | MS.gene59541:CDS |
| GCGAAACCTCTTTGTGGATA+GGG | 0.504445 | 8.4:+68701460 | MS.gene59541:CDS |
| TTTGGTTCTCTCTGATGATG+TGG | 0.519964 | 8.4:+68702306 | MS.gene59541:CDS |
| AAACAAGCGAAACCTCTTTG+TGG | 0.525654 | 8.4:+68701454 | MS.gene59541:CDS |
| TTTCTAGAAACAGACACAAA+AGG | 0.529093 | 8.4:+68702448 | MS.gene59541:CDS |
| GAAGAATGGAGTGAATATGT+TGG | 0.530325 | 8.4:+68702490 | MS.gene59541:CDS |
| GTAGCAGAAAATATTATGGA+TGG | 0.537395 | 8.4:+68700521 | MS.gene59541:CDS |
| AGCGAAACCTCTTTGTGGAT+AGG | 0.555448 | 8.4:+68701459 | MS.gene59541:CDS |
| CATTTAGATTATATGACTTG+AGG | 0.558619 | 8.4:+68702129 | MS.gene59541:CDS |
| ATGGATGGATCCTGTGAAGT+TGG | 0.558937 | 8.4:+68700536 | MS.gene59541:CDS |
| AAATTTACAGTTGAAGGAGA+TGG | 0.569253 | 8.4:+68702258 | MS.gene59541:intron |
| CCTAGCAGTTACTGTGAGAG+AGG | 0.600150 | 8.4:+68701192 | MS.gene59541:intron |
| TACATGGTGTCTCAGAAGCA+AGG | 0.611094 | 8.4:-68700631 | None:intergenic |
| GGTTGAAACAATTGTGGACA+AGG | 0.615162 | 8.4:+68702327 | MS.gene59541:CDS |
| TGCATACCCTATCCACAAAG+AGG | 0.615893 | 8.4:-68701466 | None:intergenic |
| TGATGTGGTTGAAACAATTG+TGG | 0.635953 | 8.4:+68702321 | MS.gene59541:CDS |
| GAAACAGACACAAAAGGTGA+CGG | 0.637440 | 8.4:+68702454 | MS.gene59541:CDS |
| TCTGCGTTCAGCATAAAACT+GGG | 0.644374 | 8.4:-68702664 | None:intergenic |
| CTCTTCGATGTCAATAACAA+CGG | 0.649512 | 8.4:+68701880 | MS.gene59541:CDS |
| AGCAGTTACTGTGAGAGAGG+TGG | 0.654761 | 8.4:+68701195 | MS.gene59541:intron |
| TGGTTACATTGAGCGCGAAG+AGG | 0.670430 | 8.4:+68702157 | MS.gene59541:CDS |
| TTTAGGATGAAAGATGCCCA+AGG | 0.697078 | 8.4:-68701932 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAACATGAAA+AGG | + | chr8.4:68700739-68700758 | MS.gene59541:intron | 10.0% |
| !! | AATTAGTTATTACTTAAAAA+AGG | + | chr8.4:68700860-68700879 | MS.gene59541:intron | 10.0% |
| !! | ATTAGTTATTACTTAAAAAA+GGG | + | chr8.4:68700861-68700880 | MS.gene59541:intron | 10.0% |
| !! | ATATATTAAGTGTAAAAAAG+AGG | - | chr8.4:68700839-68700858 | None:intergenic | 15.0% |
| !! | TTAGTTATTACTTAAAAAAG+GGG | + | chr8.4:68700862-68700881 | MS.gene59541:intron | 15.0% |
| !!! | AAAGTTTCTTATATATGTTT+TGG | + | chr8.4:68702404-68702423 | MS.gene59541:intron | 15.0% |
| !!! | AAGTTTCTTATATATGTTTT+GGG | + | chr8.4:68702405-68702424 | MS.gene59541:intron | 15.0% |
| !!! | AATTTTTGATTCTAATTTCA+GGG | + | chr8.4:68702624-68702643 | MS.gene59541:intron | 15.0% |
| !!! | TTTAAAACTTACATTAGATA+AGG | - | chr8.4:68702550-68702569 | None:intergenic | 15.0% |
| !! | AAAAGTAGCAGAAAATATTA+TGG | + | chr8.4:68700517-68700536 | MS.gene59541:CDS | 20.0% |
| !! | ATAAACAAGTTAAATTTCCA+AGG | - | chr8.4:68700694-68700713 | None:intergenic | 20.0% |
| !! | CAACAAAAAAAAACATGAAA+AGG | - | chr8.4:68700671-68700690 | None:intergenic | 20.0% |
| !! | TATGCATATATAAGTCATTT+GGG | + | chr8.4:68702050-68702069 | MS.gene59541:intron | 20.0% |
| !! | TTATGCATATATAAGTCATT+TGG | + | chr8.4:68702049-68702068 | MS.gene59541:intron | 20.0% |
| !!! | AGTTTCTTATATATGTTTTG+GGG | + | chr8.4:68702406-68702425 | MS.gene59541:intron | 20.0% |
| !!! | CAATTTTTGATTCTAATTTC+AGG | + | chr8.4:68702623-68702642 | MS.gene59541:intron | 20.0% |
| !!! | TGACAATTGTTTAAATGTTT+TGG | + | chr8.4:68702226-68702245 | MS.gene59541:intron | 20.0% |
| ! | AAACACTTGTGAAACTATTT+GGG | + | chr8.4:68700942-68700961 | MS.gene59541:intron | 25.0% |
| ! | AAATAGTTTCACAAGTGTTT+AGG | - | chr8.4:68700942-68700961 | None:intergenic | 25.0% |
| ! | ACATGAAAATTTACAGTTGA+AGG | + | chr8.4:68702252-68702271 | MS.gene59541:intron | 25.0% |
| ! | CATTTAGATTATATGACTTG+AGG | + | chr8.4:68702129-68702148 | MS.gene59541:CDS | 25.0% |
| ! | GAAATAAGCATGTAAGTATT+TGG | + | chr8.4:68701625-68701644 | MS.gene59541:intron | 25.0% |
| ! | GTGTGATTTAGATAATTTCA+TGG | + | chr8.4:68700788-68700807 | MS.gene59541:intron | 25.0% |
| ! | TAAACACTTGTGAAACTATT+TGG | + | chr8.4:68700941-68700960 | MS.gene59541:intron | 25.0% |
| ! | TATTCATATACAATTGGTGA+TGG | - | chr8.4:68701141-68701160 | None:intergenic | 25.0% |
| ! | TCGTGGTAAAAATTGAATTT+GGG | - | chr8.4:68701788-68701807 | None:intergenic | 25.0% |
| ! | TGTGTATTGTGTATATTAAC+AGG | + | chr8.4:68701400-68701419 | MS.gene59541:intron | 25.0% |
| ! | TTCGTGGTAAAAATTGAATT+TGG | - | chr8.4:68701789-68701808 | None:intergenic | 25.0% |
| !! | GAAAAATGGACTTATTCAAA+AGG | + | chr8.4:68701261-68701280 | MS.gene59541:CDS | 25.0% |
| !! | GATAATTTCATGGATTACTT+TGG | + | chr8.4:68700798-68700817 | MS.gene59541:intron | 25.0% |
| !! | TCATTTTCTTTTACTTCTGA+AGG | - | chr8.4:68700578-68700597 | None:intergenic | 25.0% |
| !!! | GTTTCTTATATATGTTTTGG+GGG | + | chr8.4:68702407-68702426 | MS.gene59541:intron | 25.0% |
| !!! | TTTCTTATATATGTTTTGGG+GGG | + | chr8.4:68702408-68702427 | MS.gene59541:intron | 25.0% |
| AAATTTACAGTTGAAGGAGA+TGG | + | chr8.4:68702258-68702277 | MS.gene59541:intron | 30.0% | |
| AGCACAGTTATTGTGAAAAA+TGG | + | chr8.4:68701247-68701266 | MS.gene59541:CDS | 30.0% | |
| ATCCAAACAGAACCTTAAAT+TGG | + | chr8.4:68701063-68701082 | MS.gene59541:intron | 30.0% | |
| ATCGGATGTGAATAAAAAAG+AGG | - | chr8.4:68701760-68701779 | None:intergenic | 30.0% | |
| GGTAAAAATTGAATTTGGGA+TGG | - | chr8.4:68701784-68701803 | None:intergenic | 30.0% | |
| GTAGCAGAAAATATTATGGA+TGG | + | chr8.4:68700521-68700540 | MS.gene59541:CDS | 30.0% | |
| TAAATTCGCCAAACTCTATA+TGG | - | chr8.4:68701906-68701925 | None:intergenic | 30.0% | |
| TGTTTGCATAAACGAAAACA+CGG | - | chr8.4:68701100-68701119 | None:intergenic | 30.0% | |
| TTGTTAGGAAGAGCTTATTT+GGG | + | chr8.4:68701592-68701611 | MS.gene59541:intron | 30.0% | |
| ! | AACCAATTTAAGGTTCTGTT+TGG | - | chr8.4:68701068-68701087 | None:intergenic | 30.0% |
| ! | AATTGAATTTGGGATGGAAT+CGG | - | chr8.4:68701778-68701797 | None:intergenic | 30.0% |
| ! | GAAAAATTGACTTCGAAGAA+TGG | + | chr8.4:68702476-68702495 | MS.gene59541:CDS | 30.0% |
| ! | TTTCTAGAAACAGACACAAA+AGG | + | chr8.4:68702448-68702467 | MS.gene59541:CDS | 30.0% |
| !! | ATTATCAACACTTGTTTTCG+TGG | - | chr8.4:68701805-68701824 | None:intergenic | 30.0% |
| !! | CACTTTGCTCTTTTTAGAAA+CGG | + | chr8.4:68701431-68701450 | MS.gene59541:CDS | 30.0% |
| !! | CATATTATTTTGTCTGCTTG+AGG | - | chr8.4:68701961-68701980 | None:intergenic | 30.0% |
| !! | GGAAGCTTTAGATAATTTCA+TGG | + | chr8.4:68700760-68700779 | MS.gene59541:intron | 30.0% |
| !!! | CATGTTTTTTTTTGTTGCCT+TGG | + | chr8.4:68700674-68700693 | MS.gene59541:intron | 30.0% |
| AACAACTTCTGAATGGCATT+TGG | - | chr8.4:68701577-68701596 | None:intergenic | 35.0% | |
| AAGAGGATGAAGAGAATGAA+CGG | - | chr8.4:68701743-68701762 | None:intergenic | 35.0% | |
| AATCCAAAAAGCCCTTAAGA+TGG | - | chr8.4:68700895-68700914 | None:intergenic | 35.0% | |
| AATGCCATTCAGAAGTTGTT+AGG | + | chr8.4:68701577-68701596 | MS.gene59541:intron | 35.0% | |
| ACTTGAATCTCTTGTTCGAT+TGG | + | chr8.4:68701315-68701334 | MS.gene59541:intron | 35.0% | |
| AGAGAAGAGTTTCAGAACAA+TGG | - | chr8.4:68701168-68701187 | None:intergenic | 35.0% | |
| CTCTTCGATGTCAATAACAA+CGG | + | chr8.4:68701880-68701899 | MS.gene59541:CDS | 35.0% | |
| CTGTGTCATAATGCAATGAA+TGG | - | chr8.4:68702591-68702610 | None:intergenic | 35.0% | |
| GAAGAATGGAGTGAATATGT+TGG | + | chr8.4:68702490-68702509 | MS.gene59541:CDS | 35.0% | |
| GGAAGCTTTCTTTACTTACA+TGG | - | chr8.4:68700650-68700669 | None:intergenic | 35.0% | |
| GGACGCTATTCATATACAAT+TGG | - | chr8.4:68701147-68701166 | None:intergenic | 35.0% | |
| GGTGGAAATGAACCAATTTA+AGG | - | chr8.4:68701078-68701097 | None:intergenic | 35.0% | |
| GTCATGTTCTTGAGTAATGA+TGG | - | chr8.4:68702523-68702542 | None:intergenic | 35.0% | |
| GTTGTTAGGAAGAGCTTATT+TGG | + | chr8.4:68701591-68701610 | MS.gene59541:intron | 35.0% | |
| GTTTGCATAAACGAAAACAC+GGG | - | chr8.4:68701099-68701118 | None:intergenic | 35.0% | |
| TATATTGTACGAAAGACCAC+AGG | - | chr8.4:68702191-68702210 | None:intergenic | 35.0% | |
| TCACCACGTAAAATTCTTCT+TGG | + | chr8.4:68702100-68702119 | MS.gene59541:intron | 35.0% | |
| TCTTCCTAACAACTTCTGAA+TGG | - | chr8.4:68701584-68701603 | None:intergenic | 35.0% | |
| TGATGTGGTTGAAACAATTG+TGG | + | chr8.4:68702321-68702340 | MS.gene59541:CDS | 35.0% | |
| TTAGAGCTAACAATCAGTTC+TGG | + | chr8.4:68701017-68701036 | MS.gene59541:intron | 35.0% | |
| TTATATGACTTGAGGCATAC+TGG | + | chr8.4:68702137-68702156 | MS.gene59541:CDS | 35.0% | |
| ! | ATACCATCTTAAGGGCTTTT+TGG | + | chr8.4:68700889-68700908 | MS.gene59541:intron | 35.0% |
| !! | CATATACAATTGGTGATGGA+TGG | - | chr8.4:68701137-68701156 | None:intergenic | 35.0% |
| !!! | CATGGATTACTTTGGTTTTG+TGG | + | chr8.4:68700806-68700825 | MS.gene59541:intron | 35.0% |
| !!! | GGCATTTGGCATAAGTTTTT+TGG | - | chr8.4:68701563-68701582 | None:intergenic | 35.0% |
| !!! | GGTTTTGGTTGAATCTGATT+TGG | + | chr8.4:68702288-68702307 | MS.gene59541:CDS | 35.0% |
| AAACAAGCGAAACCTCTTTG+TGG | + | chr8.4:68701454-68701473 | MS.gene59541:CDS | 40.0% | |
| AACAACGGCCATATAGAGTT+TGG | + | chr8.4:68701895-68701914 | MS.gene59541:CDS | 40.0% | |
| AGAGGATGAAGAGAATGAAC+GGG | - | chr8.4:68701742-68701761 | None:intergenic | 40.0% | |
| AGATGATCAACATCCTGGAA+TGG | - | chr8.4:68702030-68702049 | None:intergenic | 40.0% | |
| AGCTGTTTGTTTACCATTCC+AGG | + | chr8.4:68702014-68702033 | MS.gene59541:intron | 40.0% | |
| CTTATCTTTGCCAACTTCAC+AGG | - | chr8.4:68700549-68700568 | None:intergenic | 40.0% | |
| GAAACAGACACAAAAGGTGA+CGG | + | chr8.4:68702454-68702473 | MS.gene59541:CDS | 40.0% | |
| GAAGAGATCAAACATCTGCA+TGG | - | chr8.4:68701866-68701885 | None:intergenic | 40.0% | |
| GCATAAGATGATCAACATCC+TGG | - | chr8.4:68702035-68702054 | None:intergenic | 40.0% | |
| GGCGAATTTATCAGATCCTT+GGG | + | chr8.4:68701916-68701935 | MS.gene59541:CDS | 40.0% | |
| GGTTGAAACAATTGTGGACA+AGG | + | chr8.4:68702327-68702346 | MS.gene59541:CDS | 40.0% | |
| TCTGCGTTCAGCATAAAACT+GGG | - | chr8.4:68702667-68702686 | None:intergenic | 40.0% | |
| TGGCGAATTTATCAGATCCT+TGG | + | chr8.4:68701915-68701934 | MS.gene59541:CDS | 40.0% | |
| TTCTGCGTTCAGCATAAAAC+TGG | - | chr8.4:68702668-68702687 | None:intergenic | 40.0% | |
| ! | CTGCCAAGAAGAATTTTACG+TGG | - | chr8.4:68702106-68702125 | None:intergenic | 40.0% |
| ! | TTTAGGATGAAAGATGCCCA+AGG | - | chr8.4:68701935-68701954 | None:intergenic | 40.0% |
| !! | TTTGGTTCTCTCTGATGATG+TGG | + | chr8.4:68702306-68702325 | MS.gene59541:CDS | 40.0% |
| AGCGAAACCTCTTTGTGGAT+AGG | + | chr8.4:68701459-68701478 | MS.gene59541:CDS | 45.0% | |
| AGGGGTTGCATACCATCTTA+AGG | + | chr8.4:68700880-68700899 | MS.gene59541:intron | 45.0% | |
| ATGGATGGATCCTGTGAAGT+TGG | + | chr8.4:68700536-68700555 | MS.gene59541:CDS | 45.0% | |
| CGAAGAGGTAAATACTCCTG+TGG | + | chr8.4:68702172-68702191 | MS.gene59541:intron | 45.0% | |
| GAGAGAGGTGGAAATCTTGA+AGG | + | chr8.4:68701207-68701226 | MS.gene59541:CDS | 45.0% | |
| GCGAAACCTCTTTGTGGATA+GGG | + | chr8.4:68701460-68701479 | MS.gene59541:CDS | 45.0% | |
| GGGGTTGCATACCATCTTAA+GGG | + | chr8.4:68700881-68700900 | MS.gene59541:intron | 45.0% | |
| TACATGGTGTCTCAGAAGCA+AGG | - | chr8.4:68700634-68700653 | None:intergenic | 45.0% | |
| TGCATAAACGAAAACACGGG+TGG | - | chr8.4:68701096-68701115 | None:intergenic | 45.0% | |
| TGCATACCCTATCCACAAAG+AGG | - | chr8.4:68701469-68701488 | None:intergenic | 45.0% | |
| TTGTCTGCTTGAGGAGCTTT+AGG | - | chr8.4:68701952-68701971 | None:intergenic | 45.0% | |
| ! | GTTGAAGGAGATGGTGTTGA+TGG | + | chr8.4:68702267-68702286 | MS.gene59541:intron | 45.0% |
| !!! | GGAGATGGTGTTGATGGTTT+TGG | + | chr8.4:68702273-68702292 | MS.gene59541:CDS | 45.0% |
| !!! | ATCATTTTATAAATTTTATA+AGG | + | chr8.4:68702381-68702400 | MS.gene59541:intron | 5.0% |
| AGCAGTTACTGTGAGAGAGG+TGG | + | chr8.4:68701195-68701214 | MS.gene59541:intron | 50.0% | |
| CCTAGCAGTTACTGTGAGAG+AGG | + | chr8.4:68701192-68701211 | MS.gene59541:intron | 50.0% | |
| CCTCTCTCACAGTAACTGCT+AGG | - | chr8.4:68701195-68701214 | None:intergenic | 50.0% | |
| TGGTTACATTGAGCGCGAAG+AGG | + | chr8.4:68702157-68702176 | MS.gene59541:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 68700494 | 68702708 | 68700494 | ID=MS.gene59541 |
| chr8.4 | mRNA | 68700494 | 68702708 | 68700494 | ID=MS.gene59541.t1;Parent=MS.gene59541 |
| chr8.4 | exon | 68700494 | 68700650 | 68700494 | ID=MS.gene59541.t1.exon1;Parent=MS.gene59541.t1 |
| chr8.4 | CDS | 68700494 | 68700650 | 68700494 | ID=cds.MS.gene59541.t1;Parent=MS.gene59541.t1 |
| chr8.4 | exon | 68701200 | 68701282 | 68701200 | ID=MS.gene59541.t1.exon2;Parent=MS.gene59541.t1 |
| chr8.4 | CDS | 68701200 | 68701282 | 68701200 | ID=cds.MS.gene59541.t1;Parent=MS.gene59541.t1 |
| chr8.4 | exon | 68701422 | 68701481 | 68701422 | ID=MS.gene59541.t1.exon3;Parent=MS.gene59541.t1 |
| chr8.4 | CDS | 68701422 | 68701481 | 68701422 | ID=cds.MS.gene59541.t1;Parent=MS.gene59541.t1 |
| chr8.4 | exon | 68701871 | 68701979 | 68701871 | ID=MS.gene59541.t1.exon4;Parent=MS.gene59541.t1 |
| chr8.4 | CDS | 68701871 | 68701979 | 68701871 | ID=cds.MS.gene59541.t1;Parent=MS.gene59541.t1 |
| chr8.4 | exon | 68702126 | 68702178 | 68702126 | ID=MS.gene59541.t1.exon5;Parent=MS.gene59541.t1 |
| chr8.4 | CDS | 68702126 | 68702178 | 68702126 | ID=cds.MS.gene59541.t1;Parent=MS.gene59541.t1 |
| chr8.4 | exon | 68702268 | 68702348 | 68702268 | ID=MS.gene59541.t1.exon6;Parent=MS.gene59541.t1 |
| chr8.4 | CDS | 68702268 | 68702348 | 68702268 | ID=cds.MS.gene59541.t1;Parent=MS.gene59541.t1 |
| chr8.4 | exon | 68702445 | 68702557 | 68702445 | ID=MS.gene59541.t1.exon7;Parent=MS.gene59541.t1 |
| chr8.4 | CDS | 68702445 | 68702557 | 68702445 | ID=cds.MS.gene59541.t1;Parent=MS.gene59541.t1 |
| chr8.4 | exon | 68702645 | 68702708 | 68702645 | ID=MS.gene59541.t1.exon8;Parent=MS.gene59541.t1 |
| chr8.4 | CDS | 68702645 | 68702708 | 68702645 | ID=cds.MS.gene59541.t1;Parent=MS.gene59541.t1 |
| Gene Sequence |
| Protein sequence |
