Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59549.t1 | XP_013444632.1 | 96.8 | 186 | 6 | 0 | 1 | 186 | 1 | 186 | 1.40E-97 | 365.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59549.t1 | Q5ZI57 | 54.6 | 163 | 74 | 0 | 19 | 181 | 14 | 176 | 1.2e-49 | 197.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59549.t1 | G8A2X1 | 96.8 | 186 | 6 | 0 | 1 | 186 | 1 | 186 | 1.0e-97 | 365.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene59549 | MS.gene015741 | PPI |
| MS.gene59549 | MS.gene79721 | PPI |
| MS.gene59549 | MS.gene21951 | PPI |
| MS.gene92142 | MS.gene59549 | PPI |
| MS.gene59549 | MS.gene59609 | PPI |
| MS.gene59549 | MS.gene05927 | PPI |
| MS.gene21679 | MS.gene59549 | PPI |
| MS.gene59549 | MS.gene049131 | PPI |
| MS.gene59549 | MS.gene98171 | PPI |
| MS.gene59549 | MS.gene024701 | PPI |
| MS.gene59549 | MS.gene22289 | PPI |
| MS.gene59549 | MS.gene04771 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59549.t1 | MTR_8g027700 | 96.774 | 186 | 6 | 0 | 1 | 186 | 1 | 186 | 2.74e-133 | 370 |
| MS.gene59549.t1 | MTR_4g081170 | 91.398 | 186 | 16 | 0 | 1 | 186 | 1 | 186 | 4.07e-126 | 352 |
| MS.gene59549.t1 | MTR_8g027700 | 95.556 | 135 | 6 | 0 | 52 | 186 | 1 | 135 | 2.06e-93 | 268 |
| MS.gene59549.t1 | MTR_4g027400 | 87.234 | 47 | 6 | 0 | 1 | 47 | 1 | 47 | 7.98e-23 | 87.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59549.t1 | AT5G54750 | 83.333 | 186 | 31 | 0 | 1 | 186 | 1 | 186 | 4.65e-116 | 327 |
| MS.gene59549.t1 | AT5G54750 | 77.889 | 199 | 31 | 1 | 1 | 186 | 1 | 199 | 3.80e-112 | 318 |
Find 36 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTACTCATCATCCTTATA+TGG | 0.260125 | 8.4:+68568757 | None:intergenic |
| TCCTTATATGGATACTCTTC+TGG | 0.287013 | 8.4:+68568769 | None:intergenic |
| GACATGTTGTTGTATTGTTT+TGG | 0.317631 | 8.4:-68569539 | MS.gene59549:CDS |
| TCGCCGGATCGAGGAGCAAC+AGG | 0.358409 | 8.4:+68571911 | None:intergenic |
| TCCAGAAGAGTATCCATATA+AGG | 0.373933 | 8.4:-68568770 | MS.gene59549:CDS |
| ACAGAAACTTACCATATCTA+AGG | 0.380693 | 8.4:+68569426 | None:intergenic |
| GCGTCAATTGCTTACAGATC+TGG | 0.414861 | 8.4:-68571690 | MS.gene59549:CDS |
| GAACTGTTTACTCTGACATA+TGG | 0.415874 | 8.4:-68571722 | MS.gene59549:CDS |
| AACTGTTTACTCTGACATAT+GGG | 0.439336 | 8.4:-68571721 | MS.gene59549:CDS |
| CACTACTGCAACATATTAAG+TGG | 0.462095 | 8.4:-68569463 | MS.gene59549:CDS |
| TTACTGCATCTGTGACCAAT+TGG | 0.470926 | 8.4:-68569573 | MS.gene59549:CDS |
| ATATTAAGTGGAGTCATTAG+AGG | 0.471581 | 8.4:-68569451 | MS.gene59549:CDS |
| GACCTTCCTGACACTTATCA+AGG | 0.481148 | 8.4:-68569490 | MS.gene59549:CDS |
| GCCCCTGTTGCTCCTCGATC+CGG | 0.486640 | 8.4:-68571914 | MS.gene59549:CDS |
| CATTAGAGGAGCCTTAGATA+TGG | 0.489659 | 8.4:-68569437 | MS.gene59549:intron |
| TGCAGACCTTGATAAGTGTC+AGG | 0.493750 | 8.4:+68569484 | None:intergenic |
| CAATGAAGGCTGAGGTCACT+TGG | 0.495529 | 8.4:-68568855 | MS.gene59549:CDS |
| TGTCCCTTCAGCATTCCAAT+TGG | 0.505887 | 8.4:+68569558 | None:intergenic |
| CACTACTCAGGTGTCAATGA+AGG | 0.520967 | 8.4:-68568869 | MS.gene59549:intron |
| TGGCTACATGACGCGCTTCG+AGG | 0.530494 | 8.4:-68568835 | MS.gene59549:CDS |
| TTGTGTTGATTTCAGAGAGA+CGG | 0.541444 | 8.4:-68571214 | MS.gene59549:CDS |
| GTTAGCAAATATTGCATCGC+CGG | 0.549184 | 8.4:+68571895 | None:intergenic |
| TCAGGTGTCAATGAAGGCTG+AGG | 0.584417 | 8.4:-68568863 | MS.gene59549:intron |
| ATTGCTTACAGATCTGGAAG+AGG | 0.584590 | 8.4:-68571684 | MS.gene59549:CDS |
| TGATTTCAGAGAGACGGCTG+AGG | 0.601112 | 8.4:-68571208 | MS.gene59549:CDS |
| GTTGGTTTGAAAATGTTCCA+TGG | 0.606790 | 8.4:-68569598 | MS.gene59549:CDS |
| GTGACCAATTGGAATGCTGA+AGG | 0.607506 | 8.4:-68569562 | MS.gene59549:CDS |
| GACCTTGATAAGTGTCAGGA+AGG | 0.610355 | 8.4:+68569488 | None:intergenic |
| GCCGGATCGAGGAGCAACAG+GGG | 0.614367 | 8.4:+68571913 | None:intergenic |
| AATATTGCATCGCCGGATCG+AGG | 0.620703 | 8.4:+68571902 | None:intergenic |
| CGCCGGATCGAGGAGCAACA+GGG | 0.624152 | 8.4:+68571912 | None:intergenic |
| GACGGCTGAGGTGATTGCAA+AGG | 0.636993 | 8.4:-68571196 | MS.gene59549:intron |
| AGGTCAACAAAATCTACCAA+AGG | 0.640193 | 8.4:+68569508 | None:intergenic |
| TGACCAATTGGAATGCTGAA+GGG | 0.652019 | 8.4:-68569561 | MS.gene59549:CDS |
| TCACAGATGCAGTAACACCA+TGG | 0.683232 | 8.4:+68569581 | None:intergenic |
| ACTGTTTACTCTGACATATG+GGG | 0.685212 | 8.4:-68571720 | MS.gene59549:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACTATTTATTAAATAATGT+GGG | + | chr8.4:68569673-68569692 | None:intergenic | 10.0% |
| !! | TTACTATTTATTAAATAATG+TGG | + | chr8.4:68569674-68569693 | None:intergenic | 10.0% |
| !! | ATATCTTTATTAAAAGACTT+AGG | + | chr8.4:68570056-68570075 | None:intergenic | 15.0% |
| !! | ATATTATATAACTAAAGCAT+GGG | + | chr8.4:68570261-68570280 | None:intergenic | 15.0% |
| !! | ATGTAGAGAAAAAAAATTAA+GGG | + | chr8.4:68568839-68568858 | None:intergenic | 15.0% |
| !! | CAAGTATGTTTATAAATTAT+AGG | - | chr8.4:68570329-68570348 | MS.gene59549:intron | 15.0% |
| !! | TATATTATATAACTAAAGCA+TGG | + | chr8.4:68570262-68570281 | None:intergenic | 15.0% |
| !! | TATCTTTATTAAAAGACTTA+GGG | + | chr8.4:68570055-68570074 | None:intergenic | 15.0% |
| !! | TATGTAGAGAAAAAAAATTA+AGG | + | chr8.4:68568840-68568859 | None:intergenic | 15.0% |
| !! | TATTAGTAAAGCATATTTAA+AGG | - | chr8.4:68571023-68571042 | MS.gene59549:intron | 15.0% |
| !!! | AAACTCATAATTATTTTTCT+TGG | - | chr8.4:68571710-68571729 | MS.gene59549:CDS | 15.0% |
| !!! | AATAATGAATGGTTTTTTAA+AGG | + | chr8.4:68571608-68571627 | None:intergenic | 15.0% |
| !!! | CATTTTTTTCAAATTACTAT+CGG | - | chr8.4:68569160-68569179 | MS.gene59549:intron | 15.0% |
| !!! | TTTTTTTTCCCAATAAATTA+TGG | + | chr8.4:68571693-68571712 | None:intergenic | 15.0% |
| !! | AAAAAAAAGCTTATGAAACA+TGG | + | chr8.4:68570188-68570207 | None:intergenic | 20.0% |
| !! | AAAATACAGATATGAATCTA+GGG | + | chr8.4:68570820-68570839 | None:intergenic | 20.0% |
| !! | AACTGATAAGAGTAAAATAA+TGG | + | chr8.4:68570455-68570474 | None:intergenic | 20.0% |
| !! | CATACTTGTTCATATAAATT+TGG | + | chr8.4:68570317-68570336 | None:intergenic | 20.0% |
| !! | GATAATATTGAACAAATAGT+TGG | + | chr8.4:68570773-68570792 | None:intergenic | 20.0% |
| !! | TATATGTGATATGTTAAATG+AGG | + | chr8.4:68571382-68571401 | None:intergenic | 20.0% |
| !! | TGTATACATAAATAAGAGAA+AGG | - | chr8.4:68570134-68570153 | MS.gene59549:intron | 20.0% |
| !! | TTACTAATCAAGCAAATTAA+GGG | + | chr8.4:68569634-68569653 | None:intergenic | 20.0% |
| !! | TTATGATGTGTATAAATAAG+AGG | - | chr8.4:68569918-68569937 | MS.gene59549:intron | 20.0% |
| !! | TTTAACGTCCATAATTTATT+GGG | - | chr8.4:68571682-68571701 | MS.gene59549:CDS | 20.0% |
| !! | TTTACTAATCAAGCAAATTA+AGG | + | chr8.4:68569635-68569654 | None:intergenic | 20.0% |
| !!! | ATCTAAAAGTTCATTTTGAT+TGG | - | chr8.4:68570917-68570936 | MS.gene59549:intron | 20.0% |
| !!! | TTTTAACGTCCATAATTTAT+TGG | - | chr8.4:68571681-68571700 | MS.gene59549:CDS | 20.0% |
| ! | ACTTTGGACTTATAACTTAT+AGG | + | chr8.4:68570734-68570753 | None:intergenic | 25.0% |
| ! | AGATTATTCATGACTTTGTA+TGG | - | chr8.4:68571519-68571538 | MS.gene59549:intron | 25.0% |
| ! | ATTTATCCTCATTGTGATAA+AGG | - | chr8.4:68569552-68569571 | MS.gene59549:CDS | 25.0% |
| ! | CAAAATACAGATATGAATCT+AGG | + | chr8.4:68570821-68570840 | None:intergenic | 25.0% |
| ! | CAATATTATCTCATCTATCT+CGG | - | chr8.4:68570783-68570802 | MS.gene59549:intron | 25.0% |
| ! | TAATGATAATTCTATGTAGC+AGG | + | chr8.4:68570432-68570451 | None:intergenic | 25.0% |
| ! | TACTAATCAAGCAAATTAAG+GGG | + | chr8.4:68569633-68569652 | None:intergenic | 25.0% |
| ! | TATGGTAATAGTTTGATTGT+TGG | - | chr8.4:68571472-68571491 | MS.gene59549:intron | 25.0% |
| ! | TATGGTGTGTAATTGTATTT+GGG | - | chr8.4:68569330-68569349 | MS.gene59549:intron | 25.0% |
| ! | TGCTTTCAGAAAATAATGAA+TGG | + | chr8.4:68571619-68571638 | None:intergenic | 25.0% |
| ! | TTATGGTGTGTAATTGTATT+TGG | - | chr8.4:68569329-68569348 | MS.gene59549:intron | 25.0% |
| ! | TTCTTATCAAAATGACTGAT+AGG | - | chr8.4:68570079-68570098 | MS.gene59549:intron | 25.0% |
| ! | TTGTATGGTTTATCTATGTA+AGG | - | chr8.4:68571534-68571553 | MS.gene59549:intron | 25.0% |
| !! | ATTTTTCCTTATCACAGTAT+AGG | + | chr8.4:68570029-68570048 | None:intergenic | 25.0% |
| !! | TTTTCACATCTAAATAGTTG+TGG | - | chr8.4:68569291-68569310 | MS.gene59549:intron | 25.0% |
| !!! | CTCATAATTATTTTTCTTGG+AGG | - | chr8.4:68571713-68571732 | MS.gene59549:CDS | 25.0% |
| !!! | TTTTCAAGATTTTGCTTTCT+TGG | - | chr8.4:68571569-68571588 | MS.gene59549:intron | 25.0% |
| AAAAGCTTAGTTAGTTGGTT+AGG | - | chr8.4:68569895-68569914 | MS.gene59549:intron | 30.0% | |
| AACTGTTTACTCTGACATAT+GGG | - | chr8.4:68568955-68568974 | MS.gene59549:intron | 30.0% | |
| ACAATATAACTTCTGTTCTG+TGG | - | chr8.4:68569836-68569855 | MS.gene59549:intron | 30.0% | |
| ACAGAAACTTACCATATCTA+AGG | + | chr8.4:68571253-68571272 | None:intergenic | 30.0% | |
| AGCAAAATGTATTCTACTTG+GGG | - | chr8.4:68570498-68570517 | MS.gene59549:intron | 30.0% | |
| ATATTAAGTGGAGTCATTAG+AGG | - | chr8.4:68571225-68571244 | MS.gene59549:CDS | 30.0% | |
| CAGCAAAATGTATTCTACTT+GGG | - | chr8.4:68570497-68570516 | MS.gene59549:intron | 30.0% | |
| CCAAAAACTCATCAATCAAA+CGG | + | chr8.4:68569423-68569442 | None:intergenic | 30.0% | |
| CCAAACAGCAAAATTCATAT+TGG | + | chr8.4:68569369-68569388 | None:intergenic | 30.0% | |
| CGCTACAAACTAAGAAAATA+TGG | - | chr8.4:68571454-68571473 | MS.gene59549:intron | 30.0% | |
| CTGTATAAAACCAGAGTTAA+GGG | + | chr8.4:68571058-68571077 | None:intergenic | 30.0% | |
| GGTTTATCTATGTAAGGAAA+GGG | - | chr8.4:68571540-68571559 | MS.gene59549:intron | 30.0% | |
| GTTTGTGACATGTTAATGTT+TGG | - | chr8.4:68569096-68569115 | MS.gene59549:intron | 30.0% | |
| TACAATTACACACCATAACA+TGG | + | chr8.4:68569327-68569346 | None:intergenic | 30.0% | |
| TACTCTTATCAGTTTGTAGA+TGG | - | chr8.4:68570461-68570480 | MS.gene59549:intron | 30.0% | |
| TCAAAATGACTGATAGGTTA+CGG | - | chr8.4:68570085-68570104 | MS.gene59549:intron | 30.0% | |
| TCAAAGTTAAAACACGCTTT+CGG | + | chr8.4:68569777-68569796 | None:intergenic | 30.0% | |
| TCAGCAAAATGTATTCTACT+TGG | - | chr8.4:68570496-68570515 | MS.gene59549:intron | 30.0% | |
| TGAACAAAAGCTTAGTTAGT+TGG | - | chr8.4:68569890-68569909 | MS.gene59549:intron | 30.0% | |
| TGAAGAGTCAAGATAAACTT+TGG | + | chr8.4:68570750-68570769 | None:intergenic | 30.0% | |
| TGCTAGCACTAAATTTATTC+TGG | - | chr8.4:68570602-68570621 | MS.gene59549:intron | 30.0% | |
| TGGTTTATCTATGTAAGGAA+AGG | - | chr8.4:68571539-68571558 | MS.gene59549:intron | 30.0% | |
| TTGGACTTATAACTTATAGG+TGG | + | chr8.4:68570731-68570750 | None:intergenic | 30.0% | |
| ! | ATATGTACTGACCATTATGT+CGG | + | chr8.4:68570635-68570654 | None:intergenic | 30.0% |
| ! | ATTTTTCTTGGAGGAAAATG+AGG | - | chr8.4:68571722-68571741 | MS.gene59549:CDS | 30.0% |
| ! | GACATGTTGTTGTATTGTTT+TGG | - | chr8.4:68571137-68571156 | MS.gene59549:intron | 30.0% |
| ! | GGTATGACTTTTACAATAGT+GGG | - | chr8.4:68570938-68570957 | MS.gene59549:intron | 30.0% |
| ! | TGGTATGACTTTTACAATAG+TGG | - | chr8.4:68570937-68570956 | MS.gene59549:intron | 30.0% |
| ! | TTTGGTTTCTTTAGATGCTT+GGG | - | chr8.4:68569515-68569534 | MS.gene59549:CDS | 30.0% |
| !! | AAGTGAAGCATTTTGTCAAA+TGG | - | chr8.4:68570162-68570181 | MS.gene59549:intron | 30.0% |
| !! | ATTTTCAGGGGTTATAACAT+TGG | - | chr8.4:68569394-68569413 | MS.gene59549:intron | 30.0% |
| !! | CAAAGGTATTGTTTGTTGTT+TGG | - | chr8.4:68569497-68569516 | MS.gene59549:CDS | 30.0% |
| !!! | ATGTTGTTGTATTGTTTTGG+AGG | - | chr8.4:68571140-68571159 | MS.gene59549:intron | 30.0% |
| !!! | CCAATATGAATTTTGCTGTT+TGG | - | chr8.4:68569366-68569385 | MS.gene59549:intron | 30.0% |
| !!! | TATGAATTTTGCTGTTTGGT+TGG | - | chr8.4:68569370-68569389 | MS.gene59549:intron | 30.0% |
| !!! | TTCTGACCTCATTTTTTTTG+TGG | - | chr8.4:68571279-68571298 | MS.gene59549:intron | 30.0% |
| AACACAAATGAAAAACAGCC+TGG | - | chr8.4:68570539-68570558 | MS.gene59549:intron | 35.0% | |
| ACTGTTTACTCTGACATATG+GGG | - | chr8.4:68568956-68568975 | MS.gene59549:intron | 35.0% | |
| ACTTCATTCATTGCTACGAA+AGG | + | chr8.4:68571657-68571676 | None:intergenic | 35.0% | |
| AGGTCAACAAAATCTACCAA+AGG | + | chr8.4:68571171-68571190 | None:intergenic | 35.0% | |
| ATCTCATCTATCTCGGTTAT+TGG | - | chr8.4:68570790-68570809 | MS.gene59549:intron | 35.0% | |
| CACTACTGCAACATATTAAG+TGG | - | chr8.4:68571213-68571232 | MS.gene59549:CDS | 35.0% | |
| CCTGTATAAAACCAGAGTTA+AGG | + | chr8.4:68571059-68571078 | None:intergenic | 35.0% | |
| CCTGTCAATTTAGAGAGTTA+AGG | - | chr8.4:68569961-68569980 | MS.gene59549:intron | 35.0% | |
| CCTTAACTCTCTAAATTGAC+AGG | + | chr8.4:68569964-68569983 | None:intergenic | 35.0% | |
| CTTCATTCATTGCTACGAAA+GGG | + | chr8.4:68571656-68571675 | None:intergenic | 35.0% | |
| GAACTGTTTACTCTGACATA+TGG | - | chr8.4:68568954-68568973 | MS.gene59549:intron | 35.0% | |
| GACAATGCATAATATACGCA+AGG | + | chr8.4:68571327-68571346 | None:intergenic | 35.0% | |
| TATAGGTGGTCTGATTAGAA+AGG | + | chr8.4:68570717-68570736 | None:intergenic | 35.0% | |
| TCCTTATATGGATACTCTTC+TGG | + | chr8.4:68571910-68571929 | None:intergenic | 35.0% | |
| TCTGCATTAGAAATTGCTCT+TGG | - | chr8.4:68568916-68568935 | MS.gene59549:intron | 35.0% | |
| TGATAAAGGCCATGTAGAAA+TGG | - | chr8.4:68569566-68569585 | MS.gene59549:CDS | 35.0% | |
| TTCATTCATTGCTACGAAAG+GGG | + | chr8.4:68571655-68571674 | None:intergenic | 35.0% | |
| TTTGTACATTCACACTACTC+AGG | - | chr8.4:68571795-68571814 | MS.gene59549:intron | 35.0% | |
| ! | CCGTTTGATTGATGAGTTTT+TGG | - | chr8.4:68569420-68569439 | MS.gene59549:intron | 35.0% |
| ! | GTTTGGTTTCTTTAGATGCT+TGG | - | chr8.4:68569514-68569533 | MS.gene59549:CDS | 35.0% |
| ! | TATGATTGGTTCTCTGCTTA+AGG | - | chr8.4:68569727-68569746 | MS.gene59549:intron | 35.0% |
| ! | TATGTACTGACCATTATGTC+GGG | + | chr8.4:68570634-68570653 | None:intergenic | 35.0% |
| !! | CTGTTTGGTTGGTATTTTCA+GGG | - | chr8.4:68569381-68569400 | MS.gene59549:intron | 35.0% |
| !! | GTTGGTTTGAAAATGTTCCA+TGG | - | chr8.4:68571078-68571097 | MS.gene59549:intron | 35.0% |
| !! | TCCAGAAGAGTATCCATATA+AGG | - | chr8.4:68571906-68571925 | MS.gene59549:CDS | 35.0% |
| !! | TGTTTGGTTGGTATTTTCAG+GGG | - | chr8.4:68569382-68569401 | MS.gene59549:intron | 35.0% |
| !! | TTGTGTTGATTTCAGAGAGA+CGG | - | chr8.4:68569462-68569481 | MS.gene59549:CDS | 35.0% |
| !!! | AACTCTGGTTTTATACAGGT+TGG | - | chr8.4:68571060-68571079 | MS.gene59549:intron | 35.0% |
| !!! | CCTTAACTCTGGTTTTATAC+AGG | - | chr8.4:68571056-68571075 | MS.gene59549:intron | 35.0% |
| !!! | GGCATTTTAGTTCCATGTTA+TGG | - | chr8.4:68569312-68569331 | MS.gene59549:intron | 35.0% |
| !!! | TGACCTCATTTTTTTTGTGG+TGG | - | chr8.4:68571282-68571301 | MS.gene59549:intron | 35.0% |
| !!! | TGTTTTGGAGGATAATCCTT+TGG | - | chr8.4:68571152-68571171 | MS.gene59549:intron | 35.0% |
| ACAACAACAATCTCTAAGCC+AGG | + | chr8.4:68570560-68570579 | None:intergenic | 40.0% | |
| ACATGGCCTTTATCACAATG+AGG | + | chr8.4:68569561-68569580 | None:intergenic | 40.0% | |
| ACGTTGTAGGTGGTTATAGT+TGG | - | chr8.4:68570867-68570886 | MS.gene59549:intron | 40.0% | |
| ACTTCTGATCAAGGCATGTT+TGG | - | chr8.4:68569074-68569093 | MS.gene59549:intron | 40.0% | |
| ATGTGCTGCAAAAGATTGCA+TGG | + | chr8.4:68571752-68571771 | None:intergenic | 40.0% | |
| ATTGCTTACAGATCTGGAAG+AGG | - | chr8.4:68568992-68569011 | MS.gene59549:intron | 40.0% | |
| CAGTGTAACCCAACTATCTA+AGG | + | chr8.4:68570111-68570130 | None:intergenic | 40.0% | |
| CATTAGAGGAGCCTTAGATA+TGG | - | chr8.4:68571239-68571258 | MS.gene59549:CDS | 40.0% | |
| GTTAGCAAATATTGCATCGC+CGG | + | chr8.4:68568784-68568803 | None:intergenic | 40.0% | |
| TAGATTTCCTTGCACGTTGT+AGG | - | chr8.4:68570854-68570873 | MS.gene59549:intron | 40.0% | |
| TGACCAATTGGAATGCTGAA+GGG | - | chr8.4:68571115-68571134 | MS.gene59549:intron | 40.0% | |
| TTACTGCATCTGTGACCAAT+TGG | - | chr8.4:68571103-68571122 | MS.gene59549:intron | 40.0% | |
| TTAGAGAGTTAAGGACCTCT+GGG | - | chr8.4:68569970-68569989 | MS.gene59549:intron | 40.0% | |
| TTTAGAGAGTTAAGGACCTC+TGG | - | chr8.4:68569969-68569988 | MS.gene59549:intron | 40.0% | |
| !! | GCTGTTTGGTTGGTATTTTC+AGG | - | chr8.4:68569380-68569399 | MS.gene59549:intron | 40.0% |
| !!! | CTCATTTTTTTTGTGGTGGC+CGG | - | chr8.4:68571286-68571305 | MS.gene59549:intron | 40.0% |
| !!! | TCATTTTTTTTGTGGTGGCC+GGG | - | chr8.4:68571287-68571306 | MS.gene59549:intron | 40.0% |
| AGGTTACGGCCTTAGATAGT+TGG | - | chr8.4:68570099-68570118 | MS.gene59549:intron | 45.0% | |
| ATAACCACCTACAACGTGCA+AGG | + | chr8.4:68570864-68570883 | None:intergenic | 45.0% | |
| ATTTCCTTGCACGTTGTAGG+TGG | - | chr8.4:68570857-68570876 | MS.gene59549:intron | 45.0% | |
| CAAGCAAATTAAGGGGACAC+TGG | + | chr8.4:68569626-68569645 | None:intergenic | 45.0% | |
| CACTACTCAGGTGTCAATGA+AGG | - | chr8.4:68571807-68571826 | MS.gene59549:intron | 45.0% | |
| CATTTGACTAGATGCACGAG+AGG | - | chr8.4:68570401-68570420 | MS.gene59549:intron | 45.0% | |
| CCACAGACTAAACGAACAAG+CGG | + | chr8.4:68569597-68569616 | None:intergenic | 45.0% | |
| CGGCCACCACAAAAAAAATG+AGG | + | chr8.4:68571288-68571307 | None:intergenic | 45.0% | |
| GACCTTCCTGACACTTATCA+AGG | - | chr8.4:68571186-68571205 | MS.gene59549:intron | 45.0% | |
| GACCTTGATAAGTGTCAGGA+AGG | + | chr8.4:68571191-68571210 | None:intergenic | 45.0% | |
| GACGAATACAGACACAGACA+CGG | + | chr8.4:68569202-68569221 | None:intergenic | 45.0% | |
| GAGAAGATGACCCTTAACTC+TGG | - | chr8.4:68571045-68571064 | MS.gene59549:intron | 45.0% | |
| GAGGTAAGAAATGTCCTCGT+GGG | + | chr8.4:68571363-68571382 | None:intergenic | 45.0% | |
| GCGTCAATTGCTTACAGATC+TGG | - | chr8.4:68568986-68569005 | MS.gene59549:intron | 45.0% | |
| GGTTACGGCCTTAGATAGTT+GGG | - | chr8.4:68570100-68570119 | MS.gene59549:intron | 45.0% | |
| GTGACCAATTGGAATGCTGA+AGG | - | chr8.4:68571114-68571133 | MS.gene59549:intron | 45.0% | |
| TATAGGTCCCCAAACTTCGA+TGG | + | chr8.4:68570012-68570031 | None:intergenic | 45.0% | |
| TCACAGATGCAGTAACACCA+TGG | + | chr8.4:68571098-68571117 | None:intergenic | 45.0% | |
| TGAGGTAAGAAATGTCCTCG+TGG | + | chr8.4:68571364-68571383 | None:intergenic | 45.0% | |
| TGCAGACCTTGATAAGTGTC+AGG | + | chr8.4:68571195-68571214 | None:intergenic | 45.0% | |
| TGGGGACCTATACTGTGATA+AGG | - | chr8.4:68570020-68570039 | MS.gene59549:intron | 45.0% | |
| TGTCCCTTCAGCATTCCAAT+TGG | + | chr8.4:68571121-68571140 | None:intergenic | 45.0% | |
| ! | CATGCCTTGATCAGAAGTGT+CGG | + | chr8.4:68569072-68569091 | None:intergenic | 45.0% |
| ! | TGGGCTATGTGATGCTACTT+GGG | - | chr8.4:68570957-68570976 | MS.gene59549:intron | 45.0% |
| !!! | CATTTTTTTTGTGGTGGCCG+GGG | - | chr8.4:68571288-68571307 | MS.gene59549:intron | 45.0% |
| AAGGTTCAGAGTTCGAACCC+CGG | + | chr8.4:68571308-68571327 | None:intergenic | 50.0% | |
| AATATTGCATCGCCGGATCG+AGG | + | chr8.4:68568777-68568796 | None:intergenic | 50.0% | |
| CAATGAAGGCTGAGGTCACT+TGG | - | chr8.4:68571821-68571840 | MS.gene59549:intron | 50.0% | |
| CCGCTTGTTCGTTTAGTCTG+TGG | - | chr8.4:68569594-68569613 | MS.gene59549:CDS | 50.0% | |
| CGAGTGCACGACAGTATGAT+TGG | - | chr8.4:68569713-68569732 | MS.gene59549:intron | 50.0% | |
| TCAGGTGTCAATGAAGGCTG+AGG | - | chr8.4:68571813-68571832 | MS.gene59549:intron | 50.0% | |
| TGATTTCAGAGAGACGGCTG+AGG | - | chr8.4:68569468-68569487 | MS.gene59549:CDS | 50.0% | |
| TTGACTAGATGCACGAGAGG+AGG | - | chr8.4:68570404-68570423 | MS.gene59549:intron | 50.0% | |
| ! | CTGGTTTGAGCCCGACATAA+TGG | - | chr8.4:68570621-68570640 | MS.gene59549:intron | 50.0% |
| ! | GTGCTGACCATCGAAGTTTG+GGG | - | chr8.4:68570002-68570021 | MS.gene59549:intron | 50.0% |
| ! | GTGGGCTATGTGATGCTACT+TGG | - | chr8.4:68570956-68570975 | MS.gene59549:intron | 50.0% |
| !! | AGCACCGACACTTCTGATCA+AGG | - | chr8.4:68569065-68569084 | MS.gene59549:intron | 50.0% |
| !! | AGGTGCTGACCATCGAAGTT+TGG | - | chr8.4:68570000-68570019 | MS.gene59549:intron | 50.0% |
| !! | GCGGAAGTGCCATTTCTACA+TGG | + | chr8.4:68569578-68569597 | None:intergenic | 50.0% |
| !! | GGTGCTGACCATCGAAGTTT+GGG | - | chr8.4:68570001-68570020 | MS.gene59549:intron | 50.0% |
| GACGGCTGAGGTGATTGCAA+AGG | - | chr8.4:68569480-68569499 | MS.gene59549:CDS | 55.0% | |
| ! | AAGGACCTCTGGGAGTTGAG+AGG | - | chr8.4:68569980-68569999 | MS.gene59549:intron | 55.0% |
| AATGTCCTCGTGGGCGCTCT+TGG | + | chr8.4:68571354-68571373 | None:intergenic | 60.0% | |
| CAGCACCTCTCAACTCCCAG+AGG | + | chr8.4:68569988-68570007 | None:intergenic | 60.0% | |
| TGGCTACATGACGCGCTTCG+AGG | - | chr8.4:68571841-68571860 | MS.gene59549:intron | 60.0% | |
| CCTCGTGGGCGCTCTTGGTA+TGG | + | chr8.4:68571349-68571368 | None:intergenic | 65.0% | |
| CGCCGGATCGAGGAGCAACA+GGG | + | chr8.4:68568767-68568786 | None:intergenic | 65.0% | |
| GCCCCTGTTGCTCCTCGATC+CGG | - | chr8.4:68568762-68568781 | MS.gene59549:CDS | 65.0% | |
| GCCGGATCGAGGAGCAACAG+GGG | + | chr8.4:68568766-68568785 | None:intergenic | 65.0% | |
| TCGCCGGATCGAGGAGCAAC+AGG | + | chr8.4:68568768-68568787 | None:intergenic | 65.0% | |
| !! | CCATACCAAGAGCGCCCACG+AGG | - | chr8.4:68571346-68571365 | MS.gene59549:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 68568759 | 68571939 | 68568759 | ID=MS.gene59549 |
| chr8.4 | mRNA | 68568759 | 68571939 | 68568759 | ID=MS.gene59549.t1;Parent=MS.gene59549 |
| chr8.4 | exon | 68571883 | 68571939 | 68571883 | ID=MS.gene59549.t1.exon1;Parent=MS.gene59549.t1 |
| chr8.4 | CDS | 68571883 | 68571939 | 68571883 | ID=cds.MS.gene59549.t1;Parent=MS.gene59549.t1 |
| chr8.4 | exon | 68571653 | 68571750 | 68571653 | ID=MS.gene59549.t1.exon2;Parent=MS.gene59549.t1 |
| chr8.4 | CDS | 68571653 | 68571750 | 68571653 | ID=cds.MS.gene59549.t1;Parent=MS.gene59549.t1 |
| chr8.4 | exon | 68571197 | 68571296 | 68571197 | ID=MS.gene59549.t1.exon3;Parent=MS.gene59549.t1 |
| chr8.4 | CDS | 68571197 | 68571296 | 68571197 | ID=cds.MS.gene59549.t1;Parent=MS.gene59549.t1 |
| chr8.4 | exon | 68569438 | 68569620 | 68569438 | ID=MS.gene59549.t1.exon4;Parent=MS.gene59549.t1 |
| chr8.4 | CDS | 68569438 | 68569620 | 68569438 | ID=cds.MS.gene59549.t1;Parent=MS.gene59549.t1 |
| chr8.4 | exon | 68568759 | 68568881 | 68568759 | ID=MS.gene59549.t1.exon5;Parent=MS.gene59549.t1 |
| chr8.4 | CDS | 68568759 | 68568881 | 68568759 | ID=cds.MS.gene59549.t1;Parent=MS.gene59549.t1 |
| Gene Sequence |
| Protein sequence |
