Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60472.t1 | XP_013459167.1 | 97.8 | 365 | 7 | 1 | 1 | 364 | 1 | 365 | 1.80E-200 | 708.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60472.t1 | A0A072V4V0 | 97.8 | 365 | 7 | 1 | 1 | 364 | 1 | 365 | 1.3e-200 | 708.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049989 | MS.gene60472 | 0.843111 | 1.71E-58 | -1.69E-46 |
| MS.gene050297 | MS.gene60472 | 0.830886 | 2.28E-55 | -1.69E-46 |
| MS.gene051094 | MS.gene60472 | 0.806265 | 8.95E-50 | -1.69E-46 |
| MS.gene051263 | MS.gene60472 | 0.803029 | 4.24E-49 | -1.69E-46 |
| MS.gene051478 | MS.gene60472 | 0.814183 | 1.75E-51 | -1.69E-46 |
| MS.gene051742 | MS.gene60472 | 0.800018 | 1.75E-48 | -1.69E-46 |
| MS.gene052143 | MS.gene60472 | 0.807632 | 4.60E-50 | -1.69E-46 |
| MS.gene052367 | MS.gene60472 | 0.825797 | 3.85E-54 | -1.69E-46 |
| MS.gene055957 | MS.gene60472 | 0.833674 | 4.66E-56 | -1.69E-46 |
| MS.gene056041 | MS.gene60472 | 0.820342 | 7.21E-53 | -1.69E-46 |
| MS.gene056042 | MS.gene60472 | 0.839306 | 1.71E-57 | -1.69E-46 |
| MS.gene057483 | MS.gene60472 | 0.802445 | 5.59E-49 | -1.69E-46 |
| MS.gene058196 | MS.gene60472 | 0.81412 | 1.81E-51 | -1.69E-46 |
| MS.gene058197 | MS.gene60472 | 0.829482 | 5.02E-55 | -1.69E-46 |
| MS.gene058198 | MS.gene60472 | 0.833167 | 6.23E-56 | -1.69E-46 |
| MS.gene059300 | MS.gene60472 | 0.815943 | 7.14E-52 | -1.69E-46 |
| MS.gene060473 | MS.gene60472 | 0.808163 | 3.54E-50 | -1.69E-46 |
| MS.gene060565 | MS.gene60472 | 0.809104 | 2.23E-50 | -1.69E-46 |
| MS.gene06057 | MS.gene60472 | 0.830825 | 2.36E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60472.t1 | MTR_3g028600 | 97.808 | 365 | 7 | 1 | 1 | 364 | 1 | 365 | 0.0 | 723 |
| MS.gene60472.t1 | MTR_7g092270 | 33.948 | 271 | 136 | 8 | 1 | 245 | 1 | 254 | 8.05e-27 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60472.t1 | AT3G52110 | 42.857 | 371 | 161 | 12 | 1 | 360 | 1 | 331 | 2.24e-71 | 226 |
| MS.gene60472.t1 | AT3G52110 | 39.850 | 399 | 161 | 12 | 1 | 360 | 1 | 359 | 1.05e-67 | 218 |
| MS.gene60472.t1 | AT3G52110 | 41.791 | 335 | 127 | 9 | 1 | 296 | 1 | 306 | 7.09e-62 | 201 |
| MS.gene60472.t1 | AT3G52110 | 43.945 | 289 | 123 | 8 | 1 | 279 | 1 | 260 | 7.50e-58 | 189 |
Find 77 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAAACCAAAATCCGAATT+TGG | 0.214237 | 3.2:+19994111 | MS.gene60472:CDS |
| GAGTAACCAAATTCGGATTT+TGG | 0.233277 | 3.2:-19994117 | None:intergenic |
| TTGGACGGGATGTGTGTTAA+AGG | 0.236511 | 3.2:+19994493 | MS.gene60472:CDS |
| GATACAAGTACCTTCTAATT+TGG | 0.250372 | 3.2:-19993909 | None:intergenic |
| CATTGCAGAATTCTGTGATT+TGG | 0.280831 | 3.2:-19994288 | None:intergenic |
| TGAATCTGAATTTATCATCT+TGG | 0.317982 | 3.2:-19994078 | None:intergenic |
| CAAAAGCCTTGGACATGTTC+TGG | 0.319084 | 3.2:+19995842 | MS.gene60472:CDS |
| TGACTTGATCAAAGCCTTCA+TGG | 0.329487 | 3.2:-19994152 | None:intergenic |
| CAGATCACCAAGTCCTTTCA+AGG | 0.337664 | 3.2:+19993474 | MS.gene60472:CDS |
| AATTGAGGAGTAACCAAATT+CGG | 0.341390 | 3.2:-19994124 | None:intergenic |
| AAGGAAACCATTGCTTGAAA+TGG | 0.343999 | 3.2:+19994456 | MS.gene60472:CDS |
| GAATCTGAATTTATCATCTT+GGG | 0.347711 | 3.2:-19994077 | None:intergenic |
| TTCTCCAAGTCAAGAGTTAT+AGG | 0.377448 | 3.2:-19995195 | None:intergenic |
| CTGCAATGAATTGAAGAGAT+TGG | 0.379870 | 3.2:+19994303 | MS.gene60472:CDS |
| AGCTTCATCATCATTGTTGT+TGG | 0.398451 | 3.2:-19992999 | None:intergenic |
| ACCTCTTCTTTACTCTCTAC+AGG | 0.401763 | 3.2:-19994367 | None:intergenic |
| AGGTTCCAGATCCCGGCTAA+TGG | 0.435543 | 3.2:+19995317 | MS.gene60472:CDS |
| TCTGTGATTTGGTTCAGAAT+AGG | 0.435978 | 3.2:-19994277 | None:intergenic |
| CTCTTGACTTGGAGAATGTA+AGG | 0.438576 | 3.2:+19995202 | MS.gene60472:CDS |
| ACATACCATTAGCCGGGATC+TGG | 0.445431 | 3.2:-19995322 | None:intergenic |
| TGGATAGAAGAGAGAAAGAA+AGG | 0.449130 | 3.2:+19994437 | MS.gene60472:CDS |
| GAAAGAGTTGATTGCAATGA+AGG | 0.450344 | 3.2:-19994229 | None:intergenic |
| AGGAAACCATTGCTTGAAAT+GGG | 0.454113 | 3.2:+19994457 | MS.gene60472:CDS |
| AGAGATTGGCATTAAGAGCT+AGG | 0.455601 | 3.2:+19994317 | MS.gene60472:CDS |
| TTGAAAACCTTGAAAGGACT+TGG | 0.458556 | 3.2:-19993481 | None:intergenic |
| GGACAAGAAGTCAACAAACT+TGG | 0.464269 | 3.2:-19992963 | None:intergenic |
| TGGACGGGATGTGTGTTAAA+GGG | 0.464596 | 3.2:+19994494 | MS.gene60472:CDS |
| CATGCCTATAACTCTTGACT+TGG | 0.473248 | 3.2:+19995191 | MS.gene60472:CDS |
| TGTTGTTGGTGTTATGATTG+AGG | 0.476015 | 3.2:-19992985 | None:intergenic |
| GCCTTACCCATTTCAAGCAA+TGG | 0.476077 | 3.2:-19994463 | None:intergenic |
| GTTGTTGGTGTTATGATTGA+GGG | 0.482834 | 3.2:-19992984 | None:intergenic |
| GACCTCGCCGGTGAACGCTT+TGG | 0.485298 | 3.2:+19994408 | MS.gene60472:CDS |
| CCTCAAAAGGTTCCAGATCC+CGG | 0.489613 | 3.2:+19995310 | MS.gene60472:CDS |
| CAAGTGGTGACCAAATTAGA+AGG | 0.496358 | 3.2:+19993899 | MS.gene60472:CDS |
| TCCTCAATTTAAGTCCATGA+AGG | 0.499647 | 3.2:+19994138 | MS.gene60472:CDS |
| CTTCTAATTTGGTCACCACT+TGG | 0.502583 | 3.2:-19993898 | None:intergenic |
| GCCTTCATGGACTTAAATTG+AGG | 0.505521 | 3.2:-19994139 | None:intergenic |
| GGTGAACGCTTTGGCAGAGT+TGG | 0.511955 | 3.2:+19994417 | MS.gene60472:CDS |
| AAAAGTATTACAATCTCTGA+TGG | 0.516339 | 3.2:+19995811 | MS.gene60472:CDS |
| AACTCTGCCAAAGCGTTCAC+CGG | 0.518508 | 3.2:-19994415 | None:intergenic |
| TGGAACCCGCGAAAATCGAT+TGG | 0.518768 | 3.2:+19992885 | MS.gene60472:CDS |
| CAAGAATTGAAAACCTTGAA+AGG | 0.521962 | 3.2:-19993487 | None:intergenic |
| CCTCTTCTTTACTCTCTACA+GGG | 0.526026 | 3.2:-19994366 | None:intergenic |
| TTGGGGAGAAGATGATGAAA+GGG | 0.527318 | 3.2:-19994059 | None:intergenic |
| TGGAAGAGAAACAAAAGCCT+TGG | 0.531913 | 3.2:+19995831 | MS.gene60472:CDS |
| ACCATTGCTTGAAATGGGTA+AGG | 0.532730 | 3.2:+19994462 | MS.gene60472:CDS |
| GGTTAGGACATACCATTAGC+CGG | 0.538912 | 3.2:-19995329 | None:intergenic |
| AATAACCCTAACCCCTCAAA+AGG | 0.543271 | 3.2:+19995297 | MS.gene60472:CDS |
| TGGAGAATGTAAGGCAAAAG+AGG | 0.545027 | 3.2:+19995211 | MS.gene60472:CDS |
| GAGATTGGCATTAAGAGCTA+GGG | 0.549776 | 3.2:+19994318 | MS.gene60472:CDS |
| ACAACAATGATGATGAAGCT+TGG | 0.550311 | 3.2:+19993002 | MS.gene60472:CDS |
| GAGATGGGAAAATCAAGAGA+AGG | 0.552016 | 3.2:+19994029 | MS.gene60472:intron |
| CTTGGGGAGAAGATGATGAA+AGG | 0.552832 | 3.2:-19994060 | None:intergenic |
| AATGGGTAAGGCTGAAAGGT+TGG | 0.556161 | 3.2:+19994474 | MS.gene60472:CDS |
| CCCTGTAGAGAGTAAAGAAG+AGG | 0.558569 | 3.2:+19994366 | MS.gene60472:CDS |
| AATCTGAATTTATCATCTTG+GGG | 0.559370 | 3.2:-19994076 | None:intergenic |
| CAGCTTGATAATGTTGTGCA+AGG | 0.574727 | 3.2:-19995874 | None:intergenic |
| GTTAGGACATACCATTAGCC+GGG | 0.576783 | 3.2:-19995328 | None:intergenic |
| GACAAGAAGTCAACAAACTT+GGG | 0.580519 | 3.2:-19992962 | None:intergenic |
| TGACACATTGCAAGACAGTA+CGG | 0.601863 | 3.2:+19994201 | MS.gene60472:CDS |
| CAACAAACTTGGGTGCGTTG+AGG | 0.603580 | 3.2:-19992952 | None:intergenic |
| GCAAAACAAGGAAGTTGCAA+AGG | 0.614584 | 3.2:+19995768 | MS.gene60472:CDS |
| AGATGGGAAAATCAAGAGAA+GGG | 0.615803 | 3.2:+19994030 | MS.gene60472:CDS |
| GGTAAGGCTGAAAGGTTGGA+CGG | 0.619906 | 3.2:+19994478 | MS.gene60472:CDS |
| TTGAAATGGGTAAGGCTGAA+AGG | 0.620447 | 3.2:+19994470 | MS.gene60472:CDS |
| GTAAGGCTGAAAGGTTGGAC+GGG | 0.622984 | 3.2:+19994479 | MS.gene60472:CDS |
| AGGGTTATCATGCAGGAGAG+AGG | 0.624181 | 3.2:+19995727 | MS.gene60472:intron |
| TGCCAAAGCGTTCACCGGCG+AGG | 0.627171 | 3.2:-19994410 | None:intergenic |
| TTATCAGAAAATCTTCCAAG+TGG | 0.629968 | 3.2:+19993883 | MS.gene60472:CDS |
| GGAGAATGTAAGGCAAAAGA+GGG | 0.637079 | 3.2:+19995212 | MS.gene60472:CDS |
| TGGGGAGAAGATGATGAAAG+GGG | 0.644916 | 3.2:-19994058 | None:intergenic |
| TAAAGAAGTTGAGCAAAACA+AGG | 0.647922 | 3.2:+19995756 | MS.gene60472:CDS |
| GAAGAACCAGAACATGTCCA+AGG | 0.652026 | 3.2:-19995848 | None:intergenic |
| GGAGAAGATGATGAAAGGGG+TGG | 0.706516 | 3.2:-19994055 | None:intergenic |
| TGTGCATGAGAAGACCTCGC+CGG | 0.714268 | 3.2:+19994396 | MS.gene60472:CDS |
| ATTGTGCAGAAGACCTGATG+AGG | 0.747642 | 3.2:+19995161 | MS.gene60472:intron |
| CACATTGCAAGACAGTACGG+AGG | 0.751329 | 3.2:+19994204 | MS.gene60472:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTATAAAATTTTAGCT+AGG | + | chr3.2:19995550-19995569 | MS.gene60472:intron | 10.0% |
| !!! | ATTTCATTTTTTTTTCAATT+GGG | + | chr3.2:19993294-19993313 | MS.gene60472:intron | 10.0% |
| !!! | TTTCTATTAATTTTTGTTTT+TGG | + | chr3.2:19993825-19993844 | MS.gene60472:intron | 10.0% |
| !! | ATAAAGAAACACAAATTATA+AGG | - | chr3.2:19994551-19994570 | None:intergenic | 15.0% |
| !! | GATTAAACTATTCATATTTA+TGG | + | chr3.2:19995357-19995376 | MS.gene60472:intron | 15.0% |
| !! | TAAAGAAACACAAATTATAA+GGG | - | chr3.2:19994550-19994569 | None:intergenic | 15.0% |
| !! | TATACAAAAATGATTAACAA+AGG | - | chr3.2:19995133-19995152 | None:intergenic | 15.0% |
| !! | TATGAATAGTTTAATCTTAT+AGG | - | chr3.2:19995353-19995372 | None:intergenic | 15.0% |
| !!! | AAAGTTTGGATTTTAATTAA+TGG | + | chr3.2:19993375-19993394 | MS.gene60472:intron | 15.0% |
| !!! | AAAGTTTGGTTTTTTATTAA+TGG | + | chr3.2:19993229-19993248 | MS.gene60472:intron | 15.0% |
| !!! | AAGTTTGGATTTTAATTAAT+GGG | + | chr3.2:19993376-19993395 | MS.gene60472:intron | 15.0% |
| !!! | AAGTTTGGTTTTTTATTAAT+GGG | + | chr3.2:19993230-19993249 | MS.gene60472:intron | 15.0% |
| !!! | AGATTTTCTGATAAATAAAA+TGG | - | chr3.2:19993877-19993896 | None:intergenic | 15.0% |
| !!! | GATTTCATTTTTTTTTCAAT+TGG | + | chr3.2:19993293-19993312 | MS.gene60472:intron | 15.0% |
| !!! | TTTAATATTTCTATAGAGAT+GGG | + | chr3.2:19994014-19994033 | MS.gene60472:intron | 15.0% |
| !! | AGTGAAACATTACAAATATT+CGG | + | chr3.2:19994936-19994955 | MS.gene60472:intron | 20.0% |
| !! | ATAGTTTAATCTTATAGGTT+AGG | - | chr3.2:19995348-19995367 | None:intergenic | 20.0% |
| !! | GCATAACTTATACAAATTAT+TGG | + | chr3.2:19994966-19994985 | MS.gene60472:intron | 20.0% |
| !!! | AAGTTTGGATTTTTAGTAAT+TGG | + | chr3.2:19993147-19993166 | MS.gene60472:intron | 20.0% |
| !!! | AATTTTGCATTTTTCTCAAT+TGG | + | chr3.2:19993064-19993083 | MS.gene60472:intron | 20.0% |
| !!! | AGATTGCATTTTTCTTAATT+GGG | + | chr3.2:19993346-19993365 | MS.gene60472:intron | 20.0% |
| !!! | AGTTTGGATTTTTAGTAATT+GGG | + | chr3.2:19993148-19993167 | MS.gene60472:intron | 20.0% |
| !!! | ATTTTGCATTTTTCTCAATT+GGG | + | chr3.2:19993065-19993084 | MS.gene60472:intron | 20.0% |
| !!! | CTTAGTTATTTTATAGCTTA+TGG | + | chr3.2:19993643-19993662 | MS.gene60472:intron | 20.0% |
| !!! | GCATTTTAGAAGATTATAAA+GGG | - | chr3.2:19995660-19995679 | None:intergenic | 20.0% |
| !!! | GTTTAATATTTCTATAGAGA+TGG | + | chr3.2:19994013-19994032 | MS.gene60472:intron | 20.0% |
| !!! | TAGATTGCATTTTTCTTAAT+TGG | + | chr3.2:19993345-19993364 | MS.gene60472:intron | 20.0% |
| !!! | TGCATTTTAGAAGATTATAA+AGG | - | chr3.2:19995661-19995680 | None:intergenic | 20.0% |
| ! | AAACTATGTAATGTGTCAAT+TGG | + | chr3.2:19995581-19995600 | MS.gene60472:intron | 25.0% |
| ! | AATCTGAATTTATCATCTTG+GGG | - | chr3.2:19994079-19994098 | None:intergenic | 25.0% |
| ! | ATAGTTTGAGCTTCTAATTA+TGG | + | chr3.2:19993532-19993551 | MS.gene60472:intron | 25.0% |
| ! | ATGGTTTATTTACAAGACAA+TGG | + | chr3.2:19995376-19995395 | MS.gene60472:intron | 25.0% |
| ! | ATTAACAAAGGAAATAGTAC+AGG | - | chr3.2:19995121-19995140 | None:intergenic | 25.0% |
| ! | GAATCTGAATTTATCATCTT+GGG | - | chr3.2:19994080-19994099 | None:intergenic | 25.0% |
| ! | TGAATCTGAATTTATCATCT+TGG | - | chr3.2:19994081-19994100 | None:intergenic | 25.0% |
| !! | AATTATGGTGTTAATTTAGC+TGG | + | chr3.2:19993547-19993566 | MS.gene60472:intron | 25.0% |
| !! | AGATTGCATTTTTCTCAATT+GGG | + | chr3.2:19993117-19993136 | MS.gene60472:intron | 25.0% |
| !! | TAGATTGCATTTTTCTCAAT+TGG | + | chr3.2:19993116-19993135 | MS.gene60472:intron | 25.0% |
| !!! | AAAAGTATTACAATCTCTGA+TGG | + | chr3.2:19995811-19995830 | MS.gene60472:CDS | 25.0% |
| !!! | AGATTGCTTTTTTCTCAATT+AGG | + | chr3.2:19993200-19993219 | MS.gene60472:intron | 25.0% |
| !!! | ATAGTTCTGAGCTTTATTTA+TGG | + | chr3.2:19993614-19993633 | MS.gene60472:intron | 25.0% |
| !!! | CAATTAGGTTTGTTAAAGTT+TGG | + | chr3.2:19993215-19993234 | MS.gene60472:intron | 25.0% |
| !!! | TAATTGGGTTTGTTAAAGTT+TGG | + | chr3.2:19993361-19993380 | MS.gene60472:intron | 25.0% |
| !!! | TTTGGTTTTTCCTTTTTTGA+AGG | + | chr3.2:19993843-19993862 | MS.gene60472:intron | 25.0% |
| AAAGGAAATAGTACAGGAAT+TGG | - | chr3.2:19995115-19995134 | None:intergenic | 30.0% | |
| AATTGAGGAGTAACCAAATT+CGG | - | chr3.2:19994127-19994146 | None:intergenic | 30.0% | |
| ACTTTCAAATTTCCCATCTA+AGG | - | chr3.2:19994919-19994938 | None:intergenic | 30.0% | |
| AGCAAAATCTCAAATTCCTA+TGG | - | chr3.2:19993962-19993981 | None:intergenic | 30.0% | |
| ATACAACTAAAGCAAAGAGT+TGG | - | chr3.2:19995020-19995039 | None:intergenic | 30.0% | |
| ATAGAAAGCAACATAGAGAA+AGG | - | chr3.2:19993737-19993756 | None:intergenic | 30.0% | |
| ATCCATCAATGAATCTCTTT+AGG | - | chr3.2:19995455-19995474 | None:intergenic | 30.0% | |
| CAAGAATTGAAAACCTTGAA+AGG | - | chr3.2:19993490-19993509 | None:intergenic | 30.0% | |
| CGACACTTAAACTAAGATAA+CGG | - | chr3.2:19994838-19994857 | None:intergenic | 30.0% | |
| GATACAAGTACCTTCTAATT+TGG | - | chr3.2:19993912-19993931 | None:intergenic | 30.0% | |
| GATTTCATGAACTGACATTA+AGG | + | chr3.2:19995472-19995491 | MS.gene60472:intron | 30.0% | |
| TAAAGAAGTTGAGCAAAACA+AGG | + | chr3.2:19995756-19995775 | MS.gene60472:CDS | 30.0% | |
| TAGAAAGCAACATAGAGAAA+GGG | - | chr3.2:19993736-19993755 | None:intergenic | 30.0% | |
| TCGATTGGAAAAATCTAGAA+TGG | + | chr3.2:19992900-19992919 | MS.gene60472:CDS | 30.0% | |
| TCTCAAATTCCTATGGAAAA+AGG | - | chr3.2:19993955-19993974 | None:intergenic | 30.0% | |
| TGAAAACCAAAATCCGAATT+TGG | + | chr3.2:19994111-19994130 | MS.gene60472:CDS | 30.0% | |
| TTATCAGAAAATCTTCCAAG+TGG | + | chr3.2:19993883-19993902 | MS.gene60472:CDS | 30.0% | |
| TTGTTCTCAGTTTCTAACTT+TGG | + | chr3.2:19993768-19993787 | MS.gene60472:intron | 30.0% | |
| ! | CATTACTACTTCTCTAAAGA+GGG | - | chr3.2:19995684-19995703 | None:intergenic | 30.0% |
| !! | ATTTTTCCAATCGATTTTCG+CGG | - | chr3.2:19992894-19992913 | None:intergenic | 30.0% |
| !! | CAATTGGGTTTGTTAAAGTT+TGG | + | chr3.2:19993132-19993151 | MS.gene60472:intron | 30.0% |
| !! | TTTATTTTCCCCAATTTAGC+TGG | + | chr3.2:19993586-19993605 | MS.gene60472:intron | 30.0% |
| !!! | ATACTTTTGTTGTTTTGTGC+TGG | - | chr3.2:19995799-19995818 | None:intergenic | 30.0% |
| AAGGAAACCATTGCTTGAAA+TGG | + | chr3.2:19994456-19994475 | MS.gene60472:CDS | 35.0% | |
| ACTATGAACACCAGCTAAAT+TGG | - | chr3.2:19993599-19993618 | None:intergenic | 35.0% | |
| AGATGGGAAAATCAAGAGAA+GGG | + | chr3.2:19994030-19994049 | MS.gene60472:CDS | 35.0% | |
| AGCCTAAAGAGATTCATTGA+TGG | + | chr3.2:19995450-19995469 | MS.gene60472:intron | 35.0% | |
| AGCTTCATCATCATTGTTGT+TGG | - | chr3.2:19993002-19993021 | None:intergenic | 35.0% | |
| AGGAAACCATTGCTTGAAAT+GGG | + | chr3.2:19994457-19994476 | MS.gene60472:CDS | 35.0% | |
| CATTGCAGAATTCTGTGATT+TGG | - | chr3.2:19994291-19994310 | None:intergenic | 35.0% | |
| CTATGAACACCAGCTAAATT+GGG | - | chr3.2:19993598-19993617 | None:intergenic | 35.0% | |
| CTGCAATGAATTGAAGAGAT+TGG | + | chr3.2:19994303-19994322 | MS.gene60472:CDS | 35.0% | |
| GACAAGAAGTCAACAAACTT+GGG | - | chr3.2:19992965-19992984 | None:intergenic | 35.0% | |
| TATGAACACCAGCTAAATTG+GGG | - | chr3.2:19993597-19993616 | None:intergenic | 35.0% | |
| TCCTCAATTTAAGTCCATGA+AGG | + | chr3.2:19994138-19994157 | MS.gene60472:CDS | 35.0% | |
| TCTGATAGACCCCTTAATAT+GGG | - | chr3.2:19995505-19995524 | None:intergenic | 35.0% | |
| TGGATAGAAGAGAGAAAGAA+AGG | + | chr3.2:19994437-19994456 | MS.gene60472:CDS | 35.0% | |
| TGTAAAACACTGACACTGTA+TGG | - | chr3.2:19994871-19994890 | None:intergenic | 35.0% | |
| TGTAATGTGTCAATTGGAAG+AGG | + | chr3.2:19995587-19995606 | MS.gene60472:intron | 35.0% | |
| TTCTCCAAGTCAAGAGTTAT+AGG | - | chr3.2:19995198-19995217 | None:intergenic | 35.0% | |
| TTCTGATAGACCCCTTAATA+TGG | - | chr3.2:19995506-19995525 | None:intergenic | 35.0% | |
| TTGAAAACCTTGAAAGGACT+TGG | - | chr3.2:19993484-19993503 | None:intergenic | 35.0% | |
| TTTACGATCGAAATCGATGT+AGG | + | chr3.2:19994651-19994670 | MS.gene60472:intron | 35.0% | |
| ! | ACAACAATGATGATGAAGCT+TGG | + | chr3.2:19993002-19993021 | MS.gene60472:CDS | 35.0% |
| ! | ACACACTTTCCTTTTTCCAT+AGG | + | chr3.2:19993943-19993962 | MS.gene60472:intron | 35.0% |
| ! | ATACAGTGTCAGTGTTTTAC+AGG | + | chr3.2:19994870-19994889 | MS.gene60472:intron | 35.0% |
| ! | CCATTACTACTTCTCTAAAG+AGG | - | chr3.2:19995685-19995704 | None:intergenic | 35.0% |
| ! | CCTCTTTAGAGAAGTAGTAA+TGG | + | chr3.2:19995682-19995701 | MS.gene60472:intron | 35.0% |
| ! | GAAAAGAGATCTGATGATGA+GGG | + | chr3.2:19995708-19995727 | MS.gene60472:intron | 35.0% |
| ! | GAAAGAGTTGATTGCAATGA+AGG | - | chr3.2:19994232-19994251 | None:intergenic | 35.0% |
| ! | GAGTAACCAAATTCGGATTT+TGG | - | chr3.2:19994120-19994139 | None:intergenic | 35.0% |
| ! | TGAAAAGAGATCTGATGATG+AGG | + | chr3.2:19995707-19995726 | MS.gene60472:intron | 35.0% |
| !! | CGAAGAATTTGTTTTCGAGA+CGG | + | chr3.2:19994254-19994273 | MS.gene60472:CDS | 35.0% |
| !! | CTATGTTGCTTTCTATGCTT+AGG | + | chr3.2:19993741-19993760 | MS.gene60472:intron | 35.0% |
| !! | GTTGTTGGTGTTATGATTGA+GGG | - | chr3.2:19992987-19993006 | None:intergenic | 35.0% |
| !! | TCTGTGATTTGGTTCAGAAT+AGG | - | chr3.2:19994280-19994299 | None:intergenic | 35.0% |
| !! | TGTTGTTGGTGTTATGATTG+AGG | - | chr3.2:19992988-19993007 | None:intergenic | 35.0% |
| !! | TTTTTCCAATCGATTTTCGC+GGG | - | chr3.2:19992893-19992912 | None:intergenic | 35.0% |
| !!! | AGAAAATCCTCTGCTGTTTT+TGG | - | chr3.2:19993454-19993473 | None:intergenic | 35.0% |
| !!! | GAAAATCCTCTGCTGTTTTT+GGG | - | chr3.2:19993453-19993472 | None:intergenic | 35.0% |
| AAGGTAGTTGCCCCATATTA+AGG | + | chr3.2:19995491-19995510 | MS.gene60472:intron | 40.0% | |
| AATAACCCTAACCCCTCAAA+AGG | + | chr3.2:19995297-19995316 | MS.gene60472:CDS | 40.0% | |
| ACCATTGCTTGAAATGGGTA+AGG | + | chr3.2:19994462-19994481 | MS.gene60472:CDS | 40.0% | |
| ACCTCTTCTTTACTCTCTAC+AGG | - | chr3.2:19994370-19994389 | None:intergenic | 40.0% | |
| AGAGATTGGCATTAAGAGCT+AGG | + | chr3.2:19994317-19994336 | MS.gene60472:CDS | 40.0% | |
| AGGTAGTTGCCCCATATTAA+GGG | + | chr3.2:19995492-19995511 | MS.gene60472:intron | 40.0% | |
| ATGTCTAACACCGACACATT+CGG | + | chr3.2:19994773-19994792 | MS.gene60472:intron | 40.0% | |
| CAAGTGGTGACCAAATTAGA+AGG | + | chr3.2:19993899-19993918 | MS.gene60472:CDS | 40.0% | |
| CATGCCTATAACTCTTGACT+TGG | + | chr3.2:19995191-19995210 | MS.gene60472:CDS | 40.0% | |
| CCTCTTCTTTACTCTCTACA+GGG | - | chr3.2:19994369-19994388 | None:intergenic | 40.0% | |
| CTGATAGACCCCTTAATATG+GGG | - | chr3.2:19995504-19995523 | None:intergenic | 40.0% | |
| CTTCTAATTTGGTCACCACT+TGG | - | chr3.2:19993901-19993920 | None:intergenic | 40.0% | |
| GAGATGGGAAAATCAAGAGA+AGG | + | chr3.2:19994029-19994048 | MS.gene60472:intron | 40.0% | |
| GAGATTGGCATTAAGAGCTA+GGG | + | chr3.2:19994318-19994337 | MS.gene60472:CDS | 40.0% | |
| GCAAAACAAGGAAGTTGCAA+AGG | + | chr3.2:19995768-19995787 | MS.gene60472:CDS | 40.0% | |
| GCCTTCATGGACTTAAATTG+AGG | - | chr3.2:19994142-19994161 | None:intergenic | 40.0% | |
| GGACAAGAAGTCAACAAACT+TGG | - | chr3.2:19992966-19992985 | None:intergenic | 40.0% | |
| GGACTTCTTGCCTTCAAAAA+AGG | - | chr3.2:19993856-19993875 | None:intergenic | 40.0% | |
| GGAGAATGTAAGGCAAAAGA+GGG | + | chr3.2:19995212-19995231 | MS.gene60472:CDS | 40.0% | |
| TGACACATTGCAAGACAGTA+CGG | + | chr3.2:19994201-19994220 | MS.gene60472:CDS | 40.0% | |
| TGACTTGATCAAAGCCTTCA+TGG | - | chr3.2:19994155-19994174 | None:intergenic | 40.0% | |
| TGGAAGAGAAACAAAAGCCT+TGG | + | chr3.2:19995831-19995850 | MS.gene60472:CDS | 40.0% | |
| TGGAGAATGTAAGGCAAAAG+AGG | + | chr3.2:19995211-19995230 | MS.gene60472:CDS | 40.0% | |
| TTGAAATGGGTAAGGCTGAA+AGG | + | chr3.2:19994470-19994489 | MS.gene60472:CDS | 40.0% | |
| TTGGGGAGAAGATGATGAAA+GGG | - | chr3.2:19994062-19994081 | None:intergenic | 40.0% | |
| ! | ACCTGGTCAGTTTTCTCAAT+TGG | + | chr3.2:19993033-19993052 | MS.gene60472:intron | 40.0% |
| ! | CAGTGTTTTACAGGTTGCTA+AGG | + | chr3.2:19994879-19994898 | MS.gene60472:intron | 40.0% |
| ! | CCTGGTCAGTTTTCTCAATT+GGG | + | chr3.2:19993034-19993053 | MS.gene60472:intron | 40.0% |
| ! | GTTTTACAGGTTGCTAAGGT+AGG | + | chr3.2:19994883-19994902 | MS.gene60472:intron | 40.0% |
| !! | CAGCTTGATAATGTTGTGCA+AGG | - | chr3.2:19995877-19995896 | None:intergenic | 40.0% |
| !! | CTCTTGACTTGGAGAATGTA+AGG | + | chr3.2:19995202-19995221 | MS.gene60472:CDS | 40.0% |
| AATGGGTAAGGCTGAAAGGT+TGG | + | chr3.2:19994474-19994493 | MS.gene60472:CDS | 45.0% | |
| AGGCAATCTAGGTCCTTAGA+TGG | + | chr3.2:19994903-19994922 | MS.gene60472:intron | 45.0% | |
| ATGTAACCACCCGAATGTGT+CGG | - | chr3.2:19994786-19994805 | None:intergenic | 45.0% | |
| ATTGTGCAGAAGACCTGATG+AGG | + | chr3.2:19995161-19995180 | MS.gene60472:intron | 45.0% | |
| CAAAAGCCTTGGACATGTTC+TGG | + | chr3.2:19995842-19995861 | MS.gene60472:CDS | 45.0% | |
| CAATCACCCAAAAACAGCAG+AGG | + | chr3.2:19993444-19993463 | MS.gene60472:CDS | 45.0% | |
| CACTGACACTGTATGGACAT+TGG | - | chr3.2:19994864-19994883 | None:intergenic | 45.0% | |
| CAGATCACCAAGTCCTTTCA+AGG | + | chr3.2:19993474-19993493 | MS.gene60472:CDS | 45.0% | |
| CCCAATTGAGAAAACTGACC+AGG | - | chr3.2:19993037-19993056 | None:intergenic | 45.0% | |
| CCCTGTAGAGAGTAAAGAAG+AGG | + | chr3.2:19994366-19994385 | MS.gene60472:CDS | 45.0% | |
| CTTGGGGAGAAGATGATGAA+AGG | - | chr3.2:19994063-19994082 | None:intergenic | 45.0% | |
| GAAAAACACTGAGGAGAAGG+AGG | - | chr3.2:19995267-19995286 | None:intergenic | 45.0% | |
| GAAGAACCAGAACATGTCCA+AGG | - | chr3.2:19995851-19995870 | None:intergenic | 45.0% | |
| GATGATGAGGGTTATCATGC+AGG | + | chr3.2:19995720-19995739 | MS.gene60472:intron | 45.0% | |
| GCAGAAAAACACTGAGGAGA+AGG | - | chr3.2:19995270-19995289 | None:intergenic | 45.0% | |
| GCCTTACCCATTTCAAGCAA+TGG | - | chr3.2:19994466-19994485 | None:intergenic | 45.0% | |
| GGCAATCTAGGTCCTTAGAT+GGG | + | chr3.2:19994904-19994923 | MS.gene60472:intron | 45.0% | |
| GGTAGTTGCCCCATATTAAG+GGG | + | chr3.2:19995493-19995512 | MS.gene60472:intron | 45.0% | |
| GGTTAGGACATACCATTAGC+CGG | - | chr3.2:19995332-19995351 | None:intergenic | 45.0% | |
| GTGCCTTCGAACTAAAGTGT+CGG | - | chr3.2:19994729-19994748 | None:intergenic | 45.0% | |
| GTTAGGACATACCATTAGCC+GGG | - | chr3.2:19995331-19995350 | None:intergenic | 45.0% | |
| GTTGCTAAGGTAGGCAATCT+AGG | + | chr3.2:19994892-19994911 | MS.gene60472:intron | 45.0% | |
| TGGACGGGATGTGTGTTAAA+GGG | + | chr3.2:19994494-19994513 | MS.gene60472:CDS | 45.0% | |
| TGGGGAGAAGATGATGAAAG+GGG | - | chr3.2:19994061-19994080 | None:intergenic | 45.0% | |
| TGTCTAACACCGACACATTC+GGG | + | chr3.2:19994774-19994793 | MS.gene60472:intron | 45.0% | |
| TTGGACGGGATGTGTGTTAA+AGG | + | chr3.2:19994493-19994512 | MS.gene60472:CDS | 45.0% | |
| ! | ACACCGACACTTTAGTTCGA+AGG | + | chr3.2:19994723-19994742 | MS.gene60472:intron | 45.0% |
| ! | CTCCTCAGTGTTTTTCTGCT+GGG | + | chr3.2:19995271-19995290 | MS.gene60472:CDS | 45.0% |
| ! | TCGAAGGCACATCTTAAGTC+TGG | + | chr3.2:19994739-19994758 | MS.gene60472:intron | 45.0% |
| ! | TCTCCTCAGTGTTTTTCTGC+TGG | + | chr3.2:19995270-19995289 | MS.gene60472:CDS | 45.0% |
| !! | TGGAACCTTTTGAGGGGTTA+GGG | - | chr3.2:19995305-19995324 | None:intergenic | 45.0% |
| !!! | GAAGCTTGGTTTTGCAAACC+TGG | + | chr3.2:19993016-19993035 | MS.gene60472:CDS | 45.0% |
| ACATACCATTAGCCGGGATC+TGG | - | chr3.2:19995325-19995344 | None:intergenic | 50.0% | |
| AGCCCAGCAGAAAAACACTG+AGG | - | chr3.2:19995276-19995295 | None:intergenic | 50.0% | |
| AGGGTTATCATGCAGGAGAG+AGG | + | chr3.2:19995727-19995746 | MS.gene60472:intron | 50.0% | |
| CAACAAACTTGGGTGCGTTG+AGG | - | chr3.2:19992955-19992974 | None:intergenic | 50.0% | |
| CACATTGCAAGACAGTACGG+AGG | + | chr3.2:19994204-19994223 | MS.gene60472:CDS | 50.0% | |
| CCTCAAAAGGTTCCAGATCC+CGG | + | chr3.2:19995310-19995329 | MS.gene60472:CDS | 50.0% | |
| GATGTAGGACGTACGACGTA+CGG | + | chr3.2:19994666-19994685 | MS.gene60472:intron | 50.0% | |
| GGAGAAGATGATGAAAGGGG+TGG | - | chr3.2:19994058-19994077 | None:intergenic | 50.0% | |
| GGTAAGGCTGAAAGGTTGGA+CGG | + | chr3.2:19994478-19994497 | MS.gene60472:CDS | 50.0% | |
| GTAAGGCTGAAAGGTTGGAC+GGG | + | chr3.2:19994479-19994498 | MS.gene60472:CDS | 50.0% | |
| TGGAACCCGCGAAAATCGAT+TGG | + | chr3.2:19992885-19992904 | MS.gene60472:CDS | 50.0% | |
| ! | AACTCTGCCAAAGCGTTCAC+CGG | - | chr3.2:19994418-19994437 | None:intergenic | 50.0% |
| ! | GGCATGTTTTCTGCCTCATC+AGG | - | chr3.2:19995177-19995196 | None:intergenic | 50.0% |
| !! | CGGGATCTGGAACCTTTTGA+GGG | - | chr3.2:19995312-19995331 | None:intergenic | 50.0% |
| !! | CTGGAACCTTTTGAGGGGTT+AGG | - | chr3.2:19995306-19995325 | None:intergenic | 50.0% |
| !! | GGGATCTGGAACCTTTTGAG+GGG | - | chr3.2:19995311-19995330 | None:intergenic | 50.0% |
| AGGTTCCAGATCCCGGCTAA+TGG | + | chr3.2:19995317-19995336 | MS.gene60472:CDS | 55.0% | |
| CTAACACCGACACATTCGGG+TGG | + | chr3.2:19994777-19994796 | MS.gene60472:intron | 55.0% | |
| GGTGAACGCTTTGGCAGAGT+TGG | + | chr3.2:19994417-19994436 | MS.gene60472:CDS | 55.0% | |
| TGTGCATGAGAAGACCTCGC+CGG | + | chr3.2:19994396-19994415 | MS.gene60472:CDS | 55.0% | |
| !! | CCGGGATCTGGAACCTTTTG+AGG | - | chr3.2:19995313-19995332 | None:intergenic | 55.0% |
| GACCTCGCCGGTGAACGCTT+TGG | + | chr3.2:19994408-19994427 | MS.gene60472:CDS | 65.0% | |
| ! | TGCCAAAGCGTTCACCGGCG+AGG | - | chr3.2:19994413-19994432 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 19992884 | 19995897 | 19992884 | ID=MS.gene60472 |
| chr3.2 | mRNA | 19992884 | 19995897 | 19992884 | ID=MS.gene60472.t1;Parent=MS.gene60472 |
| chr3.2 | exon | 19992884 | 19993037 | 19992884 | ID=MS.gene60472.t1.exon1;Parent=MS.gene60472.t1 |
| chr3.2 | CDS | 19992884 | 19993037 | 19992884 | ID=cds.MS.gene60472.t1;Parent=MS.gene60472.t1 |
| chr3.2 | exon | 19993440 | 19993495 | 19993440 | ID=MS.gene60472.t1.exon2;Parent=MS.gene60472.t1 |
| chr3.2 | CDS | 19993440 | 19993495 | 19993440 | ID=cds.MS.gene60472.t1;Parent=MS.gene60472.t1 |
| chr3.2 | exon | 19993865 | 19993920 | 19993865 | ID=MS.gene60472.t1.exon3;Parent=MS.gene60472.t1 |
| chr3.2 | CDS | 19993865 | 19993920 | 19993865 | ID=cds.MS.gene60472.t1;Parent=MS.gene60472.t1 |
| chr3.2 | exon | 19994030 | 19994533 | 19994030 | ID=MS.gene60472.t1.exon4;Parent=MS.gene60472.t1 |
| chr3.2 | CDS | 19994030 | 19994533 | 19994030 | ID=cds.MS.gene60472.t1;Parent=MS.gene60472.t1 |
| chr3.2 | exon | 19995170 | 19995338 | 19995170 | ID=MS.gene60472.t1.exon5;Parent=MS.gene60472.t1 |
| chr3.2 | CDS | 19995170 | 19995338 | 19995170 | ID=cds.MS.gene60472.t1;Parent=MS.gene60472.t1 |
| chr3.2 | exon | 19995742 | 19995897 | 19995742 | ID=MS.gene60472.t1.exon6;Parent=MS.gene60472.t1 |
| chr3.2 | CDS | 19995742 | 19995897 | 19995742 | ID=cds.MS.gene60472.t1;Parent=MS.gene60472.t1 |
| Gene Sequence |
| Protein sequence |
