Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60725.t1 | RHN81639.1 | 98.6 | 364 | 5 | 0 | 1 | 364 | 1 | 364 | 5.10E-208 | 733.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60725.t1 | Q8L518 | 66.0 | 329 | 111 | 1 | 17 | 345 | 20 | 347 | 1.9e-131 | 470.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60725.t1 | A0A396JTL9 | 98.6 | 364 | 5 | 0 | 1 | 364 | 1 | 364 | 3.7e-208 | 733.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04991 | MS.gene60725 | -0.813364 | 2.66E-51 | -1.69E-46 |
| MS.gene050105 | MS.gene60725 | 0.812059 | 5.13E-51 | -1.69E-46 |
| MS.gene051122 | MS.gene60725 | 0.857145 | 1.99E-62 | -1.69E-46 |
| MS.gene05216 | MS.gene60725 | 0.836186 | 1.08E-56 | -1.69E-46 |
| MS.gene052674 | MS.gene60725 | 0.817508 | 3.18E-52 | -1.69E-46 |
| MS.gene052675 | MS.gene60725 | 0.813039 | 3.13E-51 | -1.69E-46 |
| MS.gene052677 | MS.gene60725 | 0.817809 | 2.72E-52 | -1.69E-46 |
| MS.gene054479 | MS.gene60725 | 0.807977 | 3.88E-50 | -1.69E-46 |
| MS.gene056849 | MS.gene60725 | 0.827517 | 1.50E-54 | -1.69E-46 |
| MS.gene058223 | MS.gene60725 | -0.85031 | 1.84E-60 | -1.69E-46 |
| MS.gene058429 | MS.gene60725 | 0.807512 | 4.88E-50 | -1.69E-46 |
| MS.gene060850 | MS.gene60725 | 0.84228 | 2.85E-58 | -1.69E-46 |
| MS.gene060851 | MS.gene60725 | 0.886608 | 2.95E-72 | -1.69E-46 |
| MS.gene060852 | MS.gene60725 | 0.88342 | 4.56E-71 | -1.69E-46 |
| MS.gene06121 | MS.gene60725 | 0.810234 | 1.28E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60725.t1 | MTR_1g097850 | 94.505 | 364 | 6 | 1 | 1 | 364 | 1 | 350 | 0.0 | 714 |
| MS.gene60725.t1 | MTR_6g039820 | 78.363 | 342 | 74 | 0 | 1 | 342 | 1 | 342 | 0.0 | 583 |
| MS.gene60725.t1 | MTR_1g097850 | 93.156 | 263 | 4 | 1 | 1 | 263 | 1 | 249 | 0.0 | 508 |
| MS.gene60725.t1 | MTR_3g013430 | 66.181 | 343 | 115 | 1 | 2 | 344 | 113 | 454 | 3.03e-176 | 499 |
| MS.gene60725.t1 | MTR_8g041330 | 63.609 | 327 | 118 | 1 | 16 | 342 | 36 | 361 | 6.18e-162 | 459 |
| MS.gene60725.t1 | MTR_6g040230 | 77.021 | 235 | 52 | 1 | 108 | 342 | 263 | 495 | 3.98e-132 | 387 |
| MS.gene60725.t1 | MTR_2g054370 | 33.333 | 324 | 193 | 6 | 27 | 342 | 57 | 365 | 1.33e-49 | 171 |
| MS.gene60725.t1 | MTR_8g041220 | 63.441 | 93 | 33 | 1 | 238 | 330 | 40 | 131 | 1.38e-39 | 137 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60725.t1 | AT1G74320 | 65.957 | 329 | 111 | 1 | 17 | 345 | 20 | 347 | 1.39e-169 | 477 |
| MS.gene60725.t1 | AT4G09760 | 63.557 | 343 | 122 | 3 | 1 | 342 | 1 | 341 | 1.85e-168 | 474 |
| MS.gene60725.t1 | AT4G09760 | 63.557 | 343 | 122 | 3 | 1 | 342 | 1 | 341 | 1.85e-168 | 474 |
| MS.gene60725.t1 | AT1G71697 | 63.006 | 346 | 126 | 2 | 1 | 344 | 1 | 346 | 1.40e-167 | 471 |
| MS.gene60725.t1 | AT4G09760 | 59.556 | 225 | 88 | 3 | 1 | 224 | 1 | 223 | 1.83e-95 | 285 |
| MS.gene60725.t1 | AT4G09760 | 58.571 | 210 | 84 | 3 | 1 | 209 | 1 | 208 | 1.06e-86 | 261 |
| MS.gene60725.t1 | AT2G26830 | 31.737 | 334 | 200 | 8 | 18 | 339 | 43 | 360 | 8.98e-52 | 176 |
Find 78 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATAATTCAATTGTCTTTA+TGG | 0.034762 | 1.2:-71241297 | None:intergenic |
| ACCATATATTCTGGGGCTTA+TGG | 0.170812 | 1.2:+71244493 | MS.gene60725:CDS |
| GTTAAGGAAGCCTACTTTAT+TGG | 0.174086 | 1.2:+71244685 | MS.gene60725:CDS |
| ACTGCGGTGGCTTCGGATTT+AGG | 0.182122 | 1.2:+71241359 | MS.gene60725:CDS |
| CTTTGGGGAGCACAAACTTT+TGG | 0.221935 | 1.2:-71243757 | None:intergenic |
| TGCATCCCAAGAAGAATTAA+TGG | 0.261372 | 1.2:+71241328 | MS.gene60725:CDS |
| CCATATATTCTGGGGCTTAT+GGG | 0.262925 | 1.2:+71244494 | MS.gene60725:CDS |
| TTACTTCCATTAATTCTTCT+TGG | 0.282291 | 1.2:-71241334 | None:intergenic |
| GGGCTTATGGGGACTTATTT+CGG | 0.306924 | 1.2:+71244506 | MS.gene60725:CDS |
| TACCAGGCATATGAAGCTTA+TGG | 0.312386 | 1.2:-71243597 | None:intergenic |
| CCCATAAGCCCCAGAATATA+TGG | 0.317567 | 1.2:-71244494 | None:intergenic |
| CTCTCGCAAACCATATATTC+TGG | 0.321780 | 1.2:+71244484 | MS.gene60725:CDS |
| TGCCACAATGACCTACAATA+TGG | 0.321926 | 1.2:+71243870 | MS.gene60725:CDS |
| AGATGATGAAATAAATATTC+TGG | 0.330658 | 1.2:+71243809 | MS.gene60725:CDS |
| AAGGTTCTGGTTCGTTTATA+TGG | 0.332124 | 1.2:+71241491 | MS.gene60725:CDS |
| CAGCGAACTGTTCACAGTTT+CGG | 0.335477 | 1.2:-71244732 | None:intergenic |
| GTACAAAGAAGGCTCATATT+TGG | 0.347463 | 1.2:+71243617 | MS.gene60725:CDS |
| AACTGTTCACAGTTTCGGTT+TGG | 0.348089 | 1.2:-71244727 | None:intergenic |
| TGACTCTGAAATATCATCTT+TGG | 0.359929 | 1.2:+71243552 | MS.gene60725:CDS |
| AGTAATTACTGCGGTGGCTT+CGG | 0.364014 | 1.2:+71241352 | MS.gene60725:CDS |
| GGCAAATCATTTCTGTGAAA+TGG | 0.366684 | 1.2:+71244068 | MS.gene60725:CDS |
| TACTTCCATTAATTCTTCTT+GGG | 0.366751 | 1.2:-71241333 | None:intergenic |
| CTTCTTGCTCGTTTCACTAC+TGG | 0.401801 | 1.2:+71241596 | MS.gene60725:CDS |
| TTGGTCATTGCACCTTTCAA+TGG | 0.406927 | 1.2:-71241419 | None:intergenic |
| ACTGTTCACAGTTTCGGTTT+GGG | 0.408491 | 1.2:-71244726 | None:intergenic |
| TGTGAAGGATATCAAGAGAT+TGG | 0.415057 | 1.2:+71243843 | MS.gene60725:CDS |
| TGGTGATTTGAGGAAGGTTC+TGG | 0.417603 | 1.2:+71241478 | MS.gene60725:CDS |
| TTTGCCAGGTCATACGCAAT+AGG | 0.420297 | 1.2:-71244051 | None:intergenic |
| GGTTTCAGCAGTATTGGTTA+AGG | 0.422059 | 1.2:+71244669 | MS.gene60725:CDS |
| TCATAATGTTACCATATTGT+AGG | 0.424013 | 1.2:-71243881 | None:intergenic |
| GGCAGAGGTTTCAGCAGTAT+TGG | 0.426230 | 1.2:+71244663 | MS.gene60725:CDS |
| TTTGGCTTTCTAGACTCTCT+CGG | 0.457270 | 1.2:+71243516 | MS.gene60725:intron |
| TGATTCACCTTAGCATTGCT+TGG | 0.458377 | 1.2:-71244435 | None:intergenic |
| TCTCGCAAACCATATATTCT+GGG | 0.466032 | 1.2:+71244485 | MS.gene60725:CDS |
| CATGTGTTCTACTAGGAACT+GGG | 0.472339 | 1.2:+71243725 | MS.gene60725:intron |
| CATATATTCTGGGGCTTATG+GGG | 0.475167 | 1.2:+71244495 | MS.gene60725:CDS |
| GAACATGAGGTGTATCACTA+TGG | 0.476295 | 1.2:-71244101 | None:intergenic |
| TTCCATAAGCTTCATATGCC+TGG | 0.488274 | 1.2:+71243595 | MS.gene60725:CDS |
| CTGGTTCGTTTATATGGTGA+AGG | 0.494682 | 1.2:+71241497 | MS.gene60725:CDS |
| TTTCACAGAAATGATTTGCC+AGG | 0.500589 | 1.2:-71244065 | None:intergenic |
| ACAATATGGTAACATTATGA+TGG | 0.504904 | 1.2:+71243884 | MS.gene60725:CDS |
| GAGCAAGAAGGCGTGGACCT+TGG | 0.507822 | 1.2:-71241583 | None:intergenic |
| CTCATATTTGGCAGAGAATG+AGG | 0.510591 | 1.2:+71243629 | MS.gene60725:CDS |
| CAGAACTCGAGGAGCGTCAA+AGG | 0.515090 | 1.2:+71244261 | MS.gene60725:intron |
| CGTGTCTATCTCAGTTCTGA+AGG | 0.521286 | 1.2:+71244290 | MS.gene60725:CDS |
| TGAAATAAATATTCTGGAGA+AGG | 0.522645 | 1.2:+71243815 | MS.gene60725:CDS |
| GTTGATGAGTCCAATAAAGT+AGG | 0.531218 | 1.2:-71244695 | None:intergenic |
| ATATGAGCCTTCTTTGTACC+AGG | 0.532673 | 1.2:-71243613 | None:intergenic |
| AAGACAATTGAATTATTGAA+AGG | 0.536432 | 1.2:+71241302 | MS.gene60725:CDS |
| CTTGACTACAGTAAATATCC+TGG | 0.536643 | 1.2:+71244123 | MS.gene60725:CDS |
| CTCTGAAATATCATCTTTGG+TGG | 0.538937 | 1.2:+71243555 | MS.gene60725:CDS |
| TTGCAAGTGATTCCATTGAA+AGG | 0.546711 | 1.2:+71241407 | MS.gene60725:CDS |
| ACAAAGAATATGCAAGGCAG+AGG | 0.550525 | 1.2:+71244648 | MS.gene60725:CDS |
| CAATCCTATTGCGTATGACC+TGG | 0.557083 | 1.2:+71244047 | MS.gene60725:CDS |
| TCATATGCCTGGTACAAAGA+AGG | 0.559823 | 1.2:+71243606 | MS.gene60725:CDS |
| TTGATTACAAAGAATATGCA+AGG | 0.569982 | 1.2:+71244642 | MS.gene60725:CDS |
| CTGGAGAAGGAGTTGTGTGA+AGG | 0.572508 | 1.2:+71243828 | MS.gene60725:CDS |
| AGTTTCGGTTTGGGCAACAA+TGG | 0.574842 | 1.2:-71244717 | None:intergenic |
| AATGGAAGTAATTACTGCGG+TGG | 0.576381 | 1.2:+71241346 | MS.gene60725:CDS |
| CAAGAAACCAAGCAATGCTA+AGG | 0.579970 | 1.2:+71244428 | MS.gene60725:CDS |
| AAATGATGGTGATTTGAGGA+AGG | 0.580359 | 1.2:+71241472 | MS.gene60725:CDS |
| TTTCACTACTGGTAGAGTTG+AGG | 0.595164 | 1.2:+71241607 | MS.gene60725:CDS |
| TACCATATTGTAGGTCATTG+TGG | 0.595534 | 1.2:-71243872 | None:intergenic |
| GTGAAACGAGCAAGAAGGCG+TGG | 0.597624 | 1.2:-71241590 | None:intergenic |
| CAAAGTGTTCACATCATCGA+TGG | 0.599429 | 1.2:-71241387 | None:intergenic |
| CAAAAGTTTGTGCTCCCCAA+AGG | 0.603866 | 1.2:+71243758 | MS.gene60725:CDS |
| TGTATCTCAAAGCATGGCCA+AGG | 0.610665 | 1.2:+71241566 | MS.gene60725:CDS |
| CAGTAGTGAAACGAGCAAGA+AGG | 0.618606 | 1.2:-71241595 | None:intergenic |
| TTTGAGTGTATCTCAAAGCA+TGG | 0.621729 | 1.2:+71241560 | MS.gene60725:CDS |
| AAGATGATATTTCAGAGTCA+CGG | 0.624385 | 1.2:-71243549 | None:intergenic |
| ATGCTTTGAGATACACTCAA+AGG | 0.634081 | 1.2:-71241558 | None:intergenic |
| TGTTCTACTAGGAACTGGGT+TGG | 0.635185 | 1.2:+71243729 | MS.gene60725:intron |
| CTCGCAAACCATATATTCTG+GGG | 0.653675 | 1.2:+71244486 | MS.gene60725:CDS |
| TAAGGTGAATCAGTTAATGA+CGG | 0.658131 | 1.2:+71244446 | MS.gene60725:CDS |
| TTACTGTAGTCAAGAACATG+AGG | 0.664678 | 1.2:-71244114 | None:intergenic |
| ATATGATGAACCAGAACTCG+AGG | 0.670863 | 1.2:+71244250 | MS.gene60725:intron |
| AATCACACACATGATGCTAG+TGG | 0.675552 | 1.2:-71244755 | None:intergenic |
| ATTAATGGAAGTAATTACTG+CGG | 0.713521 | 1.2:+71241343 | MS.gene60725:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACATAATATAGATATAAAAA+AGG | - | chr1.2:71241667-71241686 | None:intergenic | 10.0% |
| !! | TAATAGAACTAAATAATTTA+TGG | + | chr1.2:71243259-71243278 | MS.gene60725:intron | 10.0% |
| !! | TGTTTCTTTATTATTATTAT+TGG | - | chr1.2:71243106-71243125 | None:intergenic | 10.0% |
| !!! | CATAATTTTTTTAAATCAAA+TGG | - | chr1.2:71243683-71243702 | None:intergenic | 10.0% |
| !!! | TTTATATCTATATTATGTTT+TGG | + | chr1.2:71241669-71241688 | MS.gene60725:intron | 10.0% |
| !! | AAAATTGTCAATAGAAAATA+AGG | + | chr1.2:71242337-71242356 | MS.gene60725:intron | 15.0% |
| !! | ATATCAATAAAAACAAAAAC+AGG | - | chr1.2:71244198-71244217 | None:intergenic | 15.0% |
| !! | TTAAATTTCTTTCTTAAAGA+TGG | - | chr1.2:71242984-71243003 | None:intergenic | 15.0% |
| !!! | TATTTTCTAAATTTACTTAC+AGG | - | chr1.2:71242300-71242319 | None:intergenic | 15.0% |
| !!! | TCTTTAAGAAAGAAATTTAA+TGG | + | chr1.2:71242984-71243003 | MS.gene60725:intron | 15.0% |
| !!! | TTCAATTGATTTTAATTCTT+TGG | - | chr1.2:71243400-71243419 | None:intergenic | 15.0% |
| !! | AAGAAAGAAATTTAATGGAA+CGG | + | chr1.2:71242989-71243008 | MS.gene60725:intron | 20.0% |
| !! | AAGACAATTGAATTATTGAA+AGG | + | chr1.2:71241302-71241321 | MS.gene60725:CDS | 20.0% |
| !! | AAGATAAAGGGAATAAATTA+AGG | - | chr1.2:71242894-71242913 | None:intergenic | 20.0% |
| !! | ACAAAGCAGTAAAATATAAT+TGG | - | chr1.2:71242159-71242178 | None:intergenic | 20.0% |
| !! | ACTAAACTAAACTAACTTAT+AGG | - | chr1.2:71242370-71242389 | None:intergenic | 20.0% |
| !! | AGAATAAATAACATGAAGAA+AGG | - | chr1.2:71243082-71243101 | None:intergenic | 20.0% |
| !! | AGATAAAGGGAATAAATTAA+GGG | - | chr1.2:71242893-71242912 | None:intergenic | 20.0% |
| !! | AGATGATGAAATAAATATTC+TGG | + | chr1.2:71243809-71243828 | MS.gene60725:CDS | 20.0% |
| !! | ATACTATCTCACAAAATAAA+GGG | + | chr1.2:71242754-71242773 | MS.gene60725:intron | 20.0% |
| !! | ATTTATCTGAAAAACTTCAT+TGG | - | chr1.2:71241441-71241460 | None:intergenic | 20.0% |
| !! | CAATAATTCAATTGTCTTTA+TGG | - | chr1.2:71241300-71241319 | None:intergenic | 20.0% |
| !! | CTAAATAATTTATGGAACTA+AGG | + | chr1.2:71243267-71243286 | MS.gene60725:intron | 20.0% |
| !! | TAAATGTTCATTAGTAAACT+TGG | + | chr1.2:71243236-71243255 | MS.gene60725:intron | 20.0% |
| !! | TATATAAAGTAGATCAAGAT+CGG | - | chr1.2:71242717-71242736 | None:intergenic | 20.0% |
| !! | TTGAATAGAATAAACCAAAT+AGG | - | chr1.2:71242124-71242143 | None:intergenic | 20.0% |
| !!! | AAAATCAATTTTGTTGCAAT+TGG | + | chr1.2:71242080-71242099 | MS.gene60725:intron | 20.0% |
| !!! | AATTTATTCCCTTTATCTTT+TGG | + | chr1.2:71242895-71242914 | MS.gene60725:intron | 20.0% |
| !!! | ATGAAGTTTTTCAGATAAAT+TGG | + | chr1.2:71241441-71241460 | MS.gene60725:CDS | 20.0% |
| !!! | ATTTTACAAGTTAAGAAGTT+AGG | + | chr1.2:71241887-71241906 | MS.gene60725:intron | 20.0% |
| !!! | CTTCTTAACTTGTAAAATTA+AGG | - | chr1.2:71241885-71241904 | None:intergenic | 20.0% |
| !!! | TAAACAGTATGTTTTTTGAA+AGG | + | chr1.2:71243139-71243158 | MS.gene60725:intron | 20.0% |
| !!! | TAATTTGTAGAACTAAAAAG+TGG | + | chr1.2:71241777-71241796 | MS.gene60725:intron | 20.0% |
| !!! | TATAAGTAACTATCATGTTT+TGG | - | chr1.2:71243972-71243991 | None:intergenic | 20.0% |
| !!! | TGTTGAAATTTTCTTCAATA+GGG | + | chr1.2:71241520-71241539 | MS.gene60725:CDS | 20.0% |
| ! | ACAATATGGTAACATTATGA+TGG | + | chr1.2:71243884-71243903 | MS.gene60725:CDS | 25.0% |
| ! | ATAACATGAAGAAAGGAATA+TGG | - | chr1.2:71243075-71243094 | None:intergenic | 25.0% |
| ! | ATTAATGGAAGTAATTACTG+CGG | + | chr1.2:71241343-71241362 | MS.gene60725:CDS | 25.0% |
| ! | CAAAGGAAACAAAAAAATTC+GGG | + | chr1.2:71243775-71243794 | MS.gene60725:CDS | 25.0% |
| ! | CATACTATCTCACAAAATAA+AGG | + | chr1.2:71242753-71242772 | MS.gene60725:intron | 25.0% |
| ! | CCAAAGGAAACAAAAAAATT+CGG | + | chr1.2:71243774-71243793 | MS.gene60725:CDS | 25.0% |
| ! | CTAAGAACAAAAAATTTACC+AGG | - | chr1.2:71244144-71244163 | None:intergenic | 25.0% |
| ! | TAACATGAAGAAAGGAATAT+GGG | - | chr1.2:71243074-71243093 | None:intergenic | 25.0% |
| ! | TACTTCCATTAATTCTTCTT+GGG | - | chr1.2:71241336-71241355 | None:intergenic | 25.0% |
| ! | TCATAATGTTACCATATTGT+AGG | - | chr1.2:71243884-71243903 | None:intergenic | 25.0% |
| ! | TGATCTCAAAAGCTAAAATA+TGG | - | chr1.2:71242798-71242817 | None:intergenic | 25.0% |
| ! | TTACTTCCATTAATTCTTCT+TGG | - | chr1.2:71241337-71241356 | None:intergenic | 25.0% |
| ! | TTGACATATAAGAACCTATT+TGG | + | chr1.2:71242107-71242126 | MS.gene60725:intron | 25.0% |
| ! | TTGATTACAAAGAATATGCA+AGG | + | chr1.2:71244642-71244661 | MS.gene60725:CDS | 25.0% |
| ! | TTGTCAATAGAAAATAAGGT+AGG | + | chr1.2:71242341-71242360 | MS.gene60725:intron | 25.0% |
| !! | GTGTTGAAATTTTCTTCAAT+AGG | + | chr1.2:71241519-71241538 | MS.gene60725:CDS | 25.0% |
| !! | TGAAATAAATATTCTGGAGA+AGG | + | chr1.2:71243815-71243834 | MS.gene60725:CDS | 25.0% |
| !!! | AAATCACCATCATTTTTTGT+TGG | - | chr1.2:71241467-71241486 | None:intergenic | 25.0% |
| !!! | CGAATTTTTTTGTTTCCTTT+GGG | - | chr1.2:71243776-71243795 | None:intergenic | 25.0% |
| !!! | GAATTTTTTTGTTTCCTTTG+GGG | - | chr1.2:71243775-71243794 | None:intergenic | 25.0% |
| !!! | TTTGATTGTTTTGAGAAGAT+AGG | + | chr1.2:71242020-71242039 | MS.gene60725:intron | 25.0% |
| !!! | TTTTTTGCATCATGAAACTA+TGG | + | chr1.2:71241983-71242002 | MS.gene60725:intron | 25.0% |
| AAGATGATATTTCAGAGTCA+CGG | - | chr1.2:71243552-71243571 | None:intergenic | 30.0% | |
| AATTGGCCAACAAAAAATGA+TGG | + | chr1.2:71241458-71241477 | MS.gene60725:CDS | 30.0% | |
| ACAAAAAGGAACACATTAAC+AGG | - | chr1.2:71243351-71243370 | None:intergenic | 30.0% | |
| AGGGAATAAATTAAGGGAAA+AGG | - | chr1.2:71242887-71242906 | None:intergenic | 30.0% | |
| CAAATTCATCATCCTTGTAT+TGG | - | chr1.2:71243432-71243451 | None:intergenic | 30.0% | |
| GCAAAAAGAATGGTAATAGA+AGG | - | chr1.2:71243052-71243071 | None:intergenic | 30.0% | |
| GTGAGATAGTATGTTATGTT+GGG | - | chr1.2:71242746-71242765 | None:intergenic | 30.0% | |
| TAAGGTGAATCAGTTAATGA+CGG | + | chr1.2:71244446-71244465 | MS.gene60725:CDS | 30.0% | |
| TACAAATTAGTATGTCAGCA+AGG | - | chr1.2:71244231-71244250 | None:intergenic | 30.0% | |
| TCACACTAATTGTAAGCTAA+TGG | + | chr1.2:71243925-71243944 | MS.gene60725:intron | 30.0% | |
| TGTGAGATAGTATGTTATGT+TGG | - | chr1.2:71242747-71242766 | None:intergenic | 30.0% | |
| ! | CAAAAAATGATGGTGATTTG+AGG | + | chr1.2:71241468-71241487 | MS.gene60725:CDS | 30.0% |
| ! | GAAAGAGTTTTACCAATACA+AGG | + | chr1.2:71243417-71243436 | MS.gene60725:intron | 30.0% |
| !! | TGACTCTGAAATATCATCTT+TGG | + | chr1.2:71243552-71243571 | MS.gene60725:CDS | 30.0% |
| !!! | CCGAATTTTTTTGTTTCCTT+TGG | - | chr1.2:71243777-71243796 | None:intergenic | 30.0% |
| !!! | GTAACTATCATGTTTTGGAA+AGG | - | chr1.2:71243967-71243986 | None:intergenic | 30.0% |
| AGGAATATGGGCAAAAAGAA+TGG | - | chr1.2:71243062-71243081 | None:intergenic | 35.0% | |
| CCATTGCTCCAAAAGATAAA+GGG | - | chr1.2:71242906-71242925 | None:intergenic | 35.0% | |
| CGACAGAGTGAAATTCATAA+TGG | - | chr1.2:71244321-71244340 | None:intergenic | 35.0% | |
| CTTGACTACAGTAAATATCC+TGG | + | chr1.2:71244123-71244142 | MS.gene60725:CDS | 35.0% | |
| GACATCAACAACAGACAAAA+AGG | - | chr1.2:71243365-71243384 | None:intergenic | 35.0% | |
| GGAACACACAATAATCATTG+TGG | - | chr1.2:71244177-71244196 | None:intergenic | 35.0% | |
| GGCAAATCATTTCTGTGAAA+TGG | + | chr1.2:71244068-71244087 | MS.gene60725:CDS | 35.0% | |
| GTACAAAGAAGGCTCATATT+TGG | + | chr1.2:71243617-71243636 | MS.gene60725:CDS | 35.0% | |
| GTTAAGGAAGCCTACTTTAT+TGG | + | chr1.2:71244685-71244704 | MS.gene60725:CDS | 35.0% | |
| TAAAGTAGATCAAGATCGGA+CGG | - | chr1.2:71242713-71242732 | None:intergenic | 35.0% | |
| TACAATCACTCTTTGTACAC+AGG | + | chr1.2:71244405-71244424 | MS.gene60725:intron | 35.0% | |
| TACCATATTGTAGGTCATTG+TGG | - | chr1.2:71243875-71243894 | None:intergenic | 35.0% | |
| TACTCCAAAACAACCAAAAG+TGG | - | chr1.2:71242943-71242962 | None:intergenic | 35.0% | |
| TCAGTTAACAACTAGTATGC+TGG | - | chr1.2:71243322-71243341 | None:intergenic | 35.0% | |
| TCCATTGCTCCAAAAGATAA+AGG | - | chr1.2:71242907-71242926 | None:intergenic | 35.0% | |
| TCTCGCAAACCATATATTCT+GGG | + | chr1.2:71244485-71244504 | MS.gene60725:CDS | 35.0% | |
| TGCATCCCAAGAAGAATTAA+TGG | + | chr1.2:71241328-71241347 | MS.gene60725:CDS | 35.0% | |
| TGTGAAGGATATCAAGAGAT+TGG | + | chr1.2:71243843-71243862 | MS.gene60725:CDS | 35.0% | |
| TTACTGTAGTCAAGAACATG+AGG | - | chr1.2:71244117-71244136 | None:intergenic | 35.0% | |
| TTGCAAGTGATTCCATTGAA+AGG | + | chr1.2:71241407-71241426 | MS.gene60725:CDS | 35.0% | |
| TTTGAGTGTATCTCAAAGCA+TGG | + | chr1.2:71241560-71241579 | MS.gene60725:CDS | 35.0% | |
| ! | AAATGATGGTGATTTGAGGA+AGG | + | chr1.2:71241472-71241491 | MS.gene60725:CDS | 35.0% |
| ! | AGACACGTTCTTTTATTGGT+AGG | + | chr1.2:71242409-71242428 | MS.gene60725:intron | 35.0% |
| ! | GAATCCAATTTCCTCTAAGA+GGG | - | chr1.2:71242446-71242465 | None:intergenic | 35.0% |
| ! | GTCAAGACACGTTCTTTTAT+TGG | + | chr1.2:71242405-71242424 | MS.gene60725:intron | 35.0% |
| ! | GTTGATGAGTCCAATAAAGT+AGG | - | chr1.2:71244698-71244717 | None:intergenic | 35.0% |
| ! | TGTTTTCCATGTGTTCTACT+AGG | + | chr1.2:71243718-71243737 | MS.gene60725:intron | 35.0% |
| ! | TTTCACAGAAATGATTTGCC+AGG | - | chr1.2:71244068-71244087 | None:intergenic | 35.0% |
| !! | AAGGTTCTGGTTCGTTTATA+TGG | + | chr1.2:71241491-71241510 | MS.gene60725:CDS | 35.0% |
| !! | ATGCTTTGAGATACACTCAA+AGG | - | chr1.2:71241561-71241580 | None:intergenic | 35.0% |
| !! | CTCTGAAATATCATCTTTGG+TGG | + | chr1.2:71243555-71243574 | MS.gene60725:CDS | 35.0% |
| !! | GATGACTTTCCGATTTTGAT+TGG | - | chr1.2:71242610-71242629 | None:intergenic | 35.0% |
| !!! | ACTTTCCGATTTTGATTGGA+AGG | - | chr1.2:71242606-71242625 | None:intergenic | 35.0% |
| !!! | TTATCTTTTGGAGCAATGGA+GGG | + | chr1.2:71242907-71242926 | MS.gene60725:intron | 35.0% |
| !!! | TTTATCTTTTGGAGCAATGG+AGG | + | chr1.2:71242906-71242925 | MS.gene60725:intron | 35.0% |
| !!! | TTTGCCACTTTTGGTTGTTT+TGG | + | chr1.2:71242936-71242955 | MS.gene60725:intron | 35.0% |
| AACTGCAGAAAAGTTTCTCG+CGG | + | chr1.2:71242655-71242674 | MS.gene60725:intron | 40.0% | |
| AACTGTTCACAGTTTCGGTT+TGG | - | chr1.2:71244730-71244749 | None:intergenic | 40.0% | |
| AATGGAAGTAATTACTGCGG+TGG | + | chr1.2:71241346-71241365 | MS.gene60725:CDS | 40.0% | |
| ACAAAGAATATGCAAGGCAG+AGG | + | chr1.2:71244648-71244667 | MS.gene60725:CDS | 40.0% | |
| ACTGTTCACAGTTTCGGTTT+GGG | - | chr1.2:71244729-71244748 | None:intergenic | 40.0% | |
| ATATGAGCCTTCTTTGTACC+AGG | - | chr1.2:71243616-71243635 | None:intergenic | 40.0% | |
| ATATGATGAACCAGAACTCG+AGG | + | chr1.2:71244250-71244269 | MS.gene60725:intron | 40.0% | |
| CAAGAAACCAAGCAATGCTA+AGG | + | chr1.2:71244428-71244447 | MS.gene60725:CDS | 40.0% | |
| CATGTGTTCTACTAGGAACT+GGG | + | chr1.2:71243725-71243744 | MS.gene60725:intron | 40.0% | |
| CTCATATTTGGCAGAGAATG+AGG | + | chr1.2:71243629-71243648 | MS.gene60725:CDS | 40.0% | |
| CTCGCAAACCATATATTCTG+GGG | + | chr1.2:71244486-71244505 | MS.gene60725:CDS | 40.0% | |
| CTCTCGCAAACCATATATTC+TGG | + | chr1.2:71244484-71244503 | MS.gene60725:CDS | 40.0% | |
| GAACATGAGGTGTATCACTA+TGG | - | chr1.2:71244104-71244123 | None:intergenic | 40.0% | |
| GAATGGAATCATGTGCTCTT+AGG | + | chr1.2:71243025-71243044 | MS.gene60725:intron | 40.0% | |
| GATAAGAGAGTCACATACTC+TGG | - | chr1.2:71241645-71241664 | None:intergenic | 40.0% | |
| GGAAACAAAAAAATTCGGGC+TGG | + | chr1.2:71243779-71243798 | MS.gene60725:CDS | 40.0% | |
| GGAATCCAATTTCCTCTAAG+AGG | - | chr1.2:71242447-71242466 | None:intergenic | 40.0% | |
| GTTAATGAGAACACCCATTC+CGG | - | chr1.2:71242638-71242657 | None:intergenic | 40.0% | |
| TAAGCCCTCTTAGAGGAAAT+TGG | + | chr1.2:71242439-71242458 | MS.gene60725:intron | 40.0% | |
| TACCAGGCATATGAAGCTTA+TGG | - | chr1.2:71243600-71243619 | None:intergenic | 40.0% | |
| TCATATGCCTGGTACAAAGA+AGG | + | chr1.2:71243606-71243625 | MS.gene60725:CDS | 40.0% | |
| TCCGTCCTTCCAATCAAAAT+CGG | + | chr1.2:71242598-71242617 | MS.gene60725:intron | 40.0% | |
| TGATTCACCTTAGCATTGCT+TGG | - | chr1.2:71244438-71244457 | None:intergenic | 40.0% | |
| TGCCACAATGACCTACAATA+TGG | + | chr1.2:71243870-71243889 | MS.gene60725:CDS | 40.0% | |
| TTACCTATAAGCCCTCTTAG+AGG | + | chr1.2:71242432-71242451 | MS.gene60725:intron | 40.0% | |
| TTCCATAAGCTTCATATGCC+TGG | + | chr1.2:71243595-71243614 | MS.gene60725:CDS | 40.0% | |
| TTGGTCATTGCACCTTTCAA+TGG | - | chr1.2:71241422-71241441 | None:intergenic | 40.0% | |
| TTTCACTACTGGTAGAGTTG+AGG | + | chr1.2:71241607-71241626 | MS.gene60725:CDS | 40.0% | |
| ! | ACGGTATTGAGTCAATGGAA+TGG | + | chr1.2:71243008-71243027 | MS.gene60725:intron | 40.0% |
| ! | ATGGAACGGTATTGAGTCAA+TGG | + | chr1.2:71243003-71243022 | MS.gene60725:intron | 40.0% |
| ! | CAAAGTGTTCACATCATCGA+TGG | - | chr1.2:71241390-71241409 | None:intergenic | 40.0% |
| ! | CTGGTTCGTTTATATGGTGA+AGG | + | chr1.2:71241497-71241516 | MS.gene60725:CDS | 40.0% |
| ! | TTTCCTCTAAGAGGGCTTAT+AGG | - | chr1.2:71242438-71242457 | None:intergenic | 40.0% |
| !! | ACCATATATTCTGGGGCTTA+TGG | + | chr1.2:71244493-71244512 | MS.gene60725:CDS | 40.0% |
| !! | CATATATTCTGGGGCTTATG+GGG | + | chr1.2:71244495-71244514 | MS.gene60725:CDS | 40.0% |
| !! | CCATATATTCTGGGGCTTAT+GGG | + | chr1.2:71244494-71244513 | MS.gene60725:CDS | 40.0% |
| !! | GGTTTCAGCAGTATTGGTTA+AGG | + | chr1.2:71244669-71244688 | MS.gene60725:CDS | 40.0% |
| !! | TTTGGCTTTCTAGACTCTCT+CGG | + | chr1.2:71243516-71243535 | MS.gene60725:intron | 40.0% |
| !!! | CCCTTTATCTTTTGGAGCAA+TGG | + | chr1.2:71242903-71242922 | MS.gene60725:intron | 40.0% |
| !!! | CTCGCTTCTTCTCTTGTTTT+TGG | + | chr1.2:71243498-71243517 | MS.gene60725:intron | 40.0% |
| !!! | TCCGATTTTGATTGGAAGGA+CGG | - | chr1.2:71242602-71242621 | None:intergenic | 40.0% |
| AAAGTCATCGATGTCCGGAA+TGG | + | chr1.2:71242621-71242640 | MS.gene60725:intron | 45.0% | |
| AAATTGGATTCCCGCAGTCA+AGG | + | chr1.2:71242455-71242474 | MS.gene60725:intron | 45.0% | |
| AAGTCATCGATGTCCGGAAT+GGG | + | chr1.2:71242622-71242641 | MS.gene60725:intron | 45.0% | |
| AATGCGTGTAATCTCTGCAG+GGG | - | chr1.2:71242489-71242508 | None:intergenic | 45.0% | |
| AGTAATTACTGCGGTGGCTT+CGG | + | chr1.2:71241352-71241371 | MS.gene60725:CDS | 45.0% | |
| ATCGGAAAGTCATCGATGTC+CGG | + | chr1.2:71242616-71242635 | MS.gene60725:intron | 45.0% | |
| CAAAAGTTTGTGCTCCCCAA+AGG | + | chr1.2:71243758-71243777 | MS.gene60725:CDS | 45.0% | |
| CAATCCTATTGCGTATGACC+TGG | + | chr1.2:71244047-71244066 | MS.gene60725:CDS | 45.0% | |
| CAGCGAACTGTTCACAGTTT+CGG | - | chr1.2:71244735-71244754 | None:intergenic | 45.0% | |
| CAGTAGTGAAACGAGCAAGA+AGG | - | chr1.2:71241598-71241617 | None:intergenic | 45.0% | |
| CCAGTTCCTAGTAGAACACA+TGG | - | chr1.2:71243727-71243746 | None:intergenic | 45.0% | |
| CCATGTGTTCTACTAGGAAC+TGG | + | chr1.2:71243724-71243743 | MS.gene60725:intron | 45.0% | |
| CCCATAAGCCCCAGAATATA+TGG | - | chr1.2:71244497-71244516 | None:intergenic | 45.0% | |
| CTTCTTGCTCGTTTCACTAC+TGG | + | chr1.2:71241596-71241615 | MS.gene60725:CDS | 45.0% | |
| GAATGCGTGTAATCTCTGCA+GGG | - | chr1.2:71242490-71242509 | None:intergenic | 45.0% | |
| GGGCTTATGGGGACTTATTT+CGG | + | chr1.2:71244506-71244525 | MS.gene60725:CDS | 45.0% | |
| TGAATGCGTGTAATCTCTGC+AGG | - | chr1.2:71242491-71242510 | None:intergenic | 45.0% | |
| TGGTGATTTGAGGAAGGTTC+TGG | + | chr1.2:71241478-71241497 | MS.gene60725:CDS | 45.0% | |
| TGTATCTCAAAGCATGGCCA+AGG | + | chr1.2:71241566-71241585 | MS.gene60725:CDS | 45.0% | |
| TGTTCTACTAGGAACTGGGT+TGG | + | chr1.2:71243729-71243748 | MS.gene60725:intron | 45.0% | |
| TTTGCCAGGTCATACGCAAT+AGG | - | chr1.2:71244054-71244073 | None:intergenic | 45.0% | |
| ! | CGTGTCTATCTCAGTTCTGA+AGG | + | chr1.2:71244290-71244309 | MS.gene60725:CDS | 45.0% |
| !! | AGTTTCGGTTTGGGCAACAA+TGG | - | chr1.2:71244720-71244739 | None:intergenic | 45.0% |
| !! | CTTTGGGGAGCACAAACTTT+TGG | - | chr1.2:71243760-71243779 | None:intergenic | 45.0% |
| !!! | GGGCTATCATTTGCCACTTT+TGG | + | chr1.2:71242927-71242946 | MS.gene60725:intron | 45.0% |
| !!! | ATTTTATTTTATTTTGATAT+AGG | + | chr1.2:71244005-71244024 | MS.gene60725:intron | 5.0% |
| ACACGCATTCAAGACATCCG+TGG | + | chr1.2:71242500-71242519 | MS.gene60725:intron | 50.0% | |
| CGATCTTGATCGAACGACCA+CGG | - | chr1.2:71242520-71242539 | None:intergenic | 50.0% | |
| CGTGGTCGTTCGATCAAGAT+CGG | + | chr1.2:71242518-71242537 | MS.gene60725:intron | 50.0% | |
| CTGGAGAAGGAGTTGTGTGA+AGG | + | chr1.2:71243828-71243847 | MS.gene60725:CDS | 50.0% | |
| GGACGGTCAAGATTCAAGCT+TGG | + | chr1.2:71242539-71242558 | MS.gene60725:intron | 50.0% | |
| GGCAGAGGTTTCAGCAGTAT+TGG | + | chr1.2:71244663-71244682 | MS.gene60725:CDS | 50.0% | |
| GTCGTTCGATCAAGATCGGA+CGG | + | chr1.2:71242522-71242541 | MS.gene60725:intron | 50.0% | |
| ACTGCGGTGGCTTCGGATTT+AGG | + | chr1.2:71241359-71241378 | MS.gene60725:CDS | 55.0% | |
| CTTTGACGCTCCTCGAGTTC+TGG | - | chr1.2:71244263-71244282 | None:intergenic | 55.0% | |
| GATTCCCGCAGTCAAGGATC+CGG | + | chr1.2:71242461-71242480 | MS.gene60725:intron | 55.0% | |
| GTGAAACGAGCAAGAAGGCG+TGG | - | chr1.2:71241593-71241612 | None:intergenic | 55.0% | |
| TGTAATCTCTGCAGGGGAGC+CGG | - | chr1.2:71242483-71242502 | None:intergenic | 55.0% | |
| !! | CAGAACTCGAGGAGCGTCAA+AGG | + | chr1.2:71244261-71244280 | MS.gene60725:intron | 55.0% |
| ! | GAGCAAGAAGGCGTGGACCT+TGG | - | chr1.2:71241586-71241605 | None:intergenic | 60.0% |
| GGAGCCGGATCCTTGACTGC+GGG | - | chr1.2:71242468-71242487 | None:intergenic | 65.0% | |
| GGGAGCCGGATCCTTGACTG+CGG | - | chr1.2:71242469-71242488 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 71241293 | 71244775 | 71241293 | ID=MS.gene60725 |
| chr1.2 | mRNA | 71241293 | 71244775 | 71241293 | ID=MS.gene60725.t1;Parent=MS.gene60725 |
| chr1.2 | exon | 71241293 | 71241646 | 71241293 | ID=MS.gene60725.t1.exon1;Parent=MS.gene60725.t1 |
| chr1.2 | CDS | 71241293 | 71241646 | 71241293 | ID=cds.MS.gene60725.t1;Parent=MS.gene60725.t1 |
| chr1.2 | exon | 71243529 | 71243650 | 71243529 | ID=MS.gene60725.t1.exon2;Parent=MS.gene60725.t1 |
| chr1.2 | CDS | 71243529 | 71243650 | 71243529 | ID=cds.MS.gene60725.t1;Parent=MS.gene60725.t1 |
| chr1.2 | exon | 71243740 | 71243935 | 71243740 | ID=MS.gene60725.t1.exon3;Parent=MS.gene60725.t1 |
| chr1.2 | CDS | 71243740 | 71243935 | 71243740 | ID=cds.MS.gene60725.t1;Parent=MS.gene60725.t1 |
| chr1.2 | exon | 71244027 | 71244144 | 71244027 | ID=MS.gene60725.t1.exon4;Parent=MS.gene60725.t1 |
| chr1.2 | CDS | 71244027 | 71244144 | 71244027 | ID=cds.MS.gene60725.t1;Parent=MS.gene60725.t1 |
| chr1.2 | exon | 71244264 | 71244311 | 71244264 | ID=MS.gene60725.t1.exon5;Parent=MS.gene60725.t1 |
| chr1.2 | CDS | 71244264 | 71244311 | 71244264 | ID=cds.MS.gene60725.t1;Parent=MS.gene60725.t1 |
| chr1.2 | exon | 71244427 | 71244527 | 71244427 | ID=MS.gene60725.t1.exon6;Parent=MS.gene60725.t1 |
| chr1.2 | CDS | 71244427 | 71244527 | 71244427 | ID=cds.MS.gene60725.t1;Parent=MS.gene60725.t1 |
| chr1.2 | exon | 71244620 | 71244775 | 71244620 | ID=MS.gene60725.t1.exon7;Parent=MS.gene60725.t1 |
| chr1.2 | CDS | 71244620 | 71244775 | 71244620 | ID=cds.MS.gene60725.t1;Parent=MS.gene60725.t1 |
| Gene Sequence |
| Protein sequence |
