AlfalfaGEDB | MS.gene60846

M. sativa cultivar XinJiangDaYe / MS.gene60846

KEGG: -
GO: GO:0003674 GO:0005488 GO:0030246
PFAM: PF00139.22

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60846.t1	XP_013469340.1	74.6	276	65	2	1	273	1	274	6.80E-104	387.1

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60846.t1	Q41160	53.1	271	122	4	5	274	1	267	1.1e-67	258.1

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60846.t1	A0A072VPS3	74.6	276	65	2	1	273	1	274	4.9e-104	387.1

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04932	MS.gene60846	0.825998	3.45E-54	-1.69E-46
MS.gene049549	MS.gene60846	0.803738	3.02E-49	-1.69E-46
MS.gene050464	MS.gene60846	-0.802045	6.76E-49	-1.69E-46
MS.gene052223	MS.gene60846	0.815131	1.08E-51	-1.69E-46
MS.gene05240	MS.gene60846	0.812256	4.65E-51	-1.69E-46
MS.gene052702	MS.gene60846	0.835475	1.64E-56	-1.69E-46
MS.gene052706	MS.gene60846	0.830435	2.94E-55	-1.69E-46
MS.gene054181	MS.gene60846	0.804003	2.66E-49	-1.69E-46
MS.gene054277	MS.gene60846	0.805897	1.07E-49	-1.69E-46
MS.gene054742	MS.gene60846	0.800141	1.66E-48	-1.69E-46
MS.gene055601	MS.gene60846	0.855182	7.49E-62	-1.69E-46
MS.gene056590	MS.gene60846	0.801027	1.09E-48	-1.69E-46
MS.gene056690	MS.gene60846	0.81352	2.45E-51	-1.69E-46
MS.gene056691	MS.gene60846	0.800019	1.75E-48	-1.69E-46
MS.gene056899	MS.gene60846	0.853169	2.85E-61	-1.69E-46
MS.gene058381	MS.gene60846	0.807335	5.31E-50	-1.69E-46
MS.gene059043	MS.gene60846	0.817363	3.43E-52	-1.69E-46
MS.gene059402	MS.gene60846	0.837995	3.74E-57	-1.69E-46
MS.gene060087	MS.gene60846	0.819283	1.26E-52	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60846.t1	MTR_1g090973	75.000	276	64	2	1	273	1	274	2.90e-139	393
MS.gene60846.t1	MTR_1g090960	59.929	282	66	5	1	273	1	244	2.20e-104	303
MS.gene60846.t1	MTR_3g047140	53.875	271	122	3	1	270	1	269	3.88e-91	271
MS.gene60846.t1	MTR_0163s0020	51.254	279	129	4	1	275	2	277	4.05e-87	261
MS.gene60846.t1	MTR_0684s0020	51.254	279	129	4	1	275	1	276	5.50e-87	261
MS.gene60846.t1	MTR_3g054170	52.893	242	110	3	21	262	17	254	1.51e-81	246
MS.gene60846.t1	MTR_3g054180	53.909	243	108	3	21	262	21	260	1.55e-81	246
MS.gene60846.t1	MTR_3g054200	52.066	242	112	3	21	262	17	254	7.85e-78	236
MS.gene60846.t1	MTR_1g090943	47.431	253	128	4	14	265	15	263	2.66e-67	211
MS.gene60846.t1	MTR_3g027280	46.528	288	135	11	1	276	1	281	8.30e-62	196
MS.gene60846.t1	MTR_1g090957	44.599	287	130	12	1	276	1	269	2.02e-55	180
MS.gene60846.t1	MTR_1g090937	41.455	275	141	10	1	266	1	264	4.62e-54	176
MS.gene60846.t1	MTR_1g090930	41.935	279	138	11	1	266	1	268	5.53e-49	164
MS.gene60846.t1	MTR_8g068040	37.500	264	140	9	14	263	10	262	1.36e-42	146
MS.gene60846.t1	MTR_4g056320	37.269	271	121	9	2	266	6	233	9.66e-42	144
MS.gene60846.t1	MTR_8g068030	36.466	266	144	9	14	263	10	266	8.01e-41	142
MS.gene60846.t1	MTR_8g023510	38.060	268	151	10	1	262	1	259	1.07e-37	134
MS.gene60846.t1	MTR_5g031160	36.237	287	146	13	6	262	8	287	2.17e-37	134
MS.gene60846.t1	MTR_5g031120	38.618	246	129	11	35	262	38	279	1.02e-36	132
MS.gene60846.t1	MTR_5g031100	37.143	245	133	10	35	262	38	278	1.89e-36	131
MS.gene60846.t1	MTR_5g031140	37.652	247	133	11	33	262	44	286	1.27e-35	129
MS.gene60846.t1	MTR_4g023810	36.864	236	140	6	30	263	27	255	3.13e-35	127
MS.gene60846.t1	MTR_8g068050	34.926	272	157	9	11	270	18	281	1.09e-32	126
MS.gene60846.t1	MTR_8g067980	34.599	237	139	8	36	260	25	257	8.72e-31	115
MS.gene60846.t1	MTR_4g093080	32.463	268	162	8	17	272	9	269	1.71e-28	114
MS.gene60846.t1	MTR_8g067990	34.247	219	129	8	53	260	43	257	4.24e-28	108
MS.gene60846.t1	MTR_4g056360	32.463	268	134	11	2	262	6	233	6.99e-28	108
MS.gene60846.t1	MTR_8g067940	33.696	276	155	13	8	262	13	281	2.52e-27	107
MS.gene60846.t1	MTR_7g115740	32.031	256	152	9	23	263	13	261	6.16e-26	107
MS.gene60846.t1	MTR_4g093110	34.231	260	143	13	19	263	19	265	6.43e-26	107
MS.gene60846.t1	MTR_8g067735	33.197	244	145	9	35	265	43	281	1.27e-25	106
MS.gene60846.t1	MTR_1g014240	36.066	244	135	10	38	265	40	278	1.40e-25	106
MS.gene60846.t1	MTR_4g093140	32.558	258	150	12	19	263	19	265	7.18e-25	104
MS.gene60846.t1	MTR_8g067690	34.034	238	144	7	35	262	60	294	1.23e-23	100
MS.gene60846.t1	MTR_8g067720	30.996	271	167	9	9	269	4	264	1.38e-23	100
MS.gene60846.t1	MTR_4g093070	29.960	247	157	7	29	263	25	267	5.64e-23	98.6
MS.gene60846.t1	MTR_7g116130	31.907	257	159	8	23	267	14	266	7.51e-23	98.2
MS.gene60846.t1	MTR_8g067960	35.185	216	124	9	58	262	31	241	1.74e-22	93.6
MS.gene60846.t1	MTR_5g031090	31.707	246	147	10	35	262	33	275	1.91e-22	94.0
MS.gene60846.t1	MTR_3g463370	31.636	275	134	8	11	275	6	236	7.21e-22	91.7
MS.gene60846.t1	MTR_8g067930	31.086	267	167	9	16	269	4	266	7.32e-22	95.5
MS.gene60846.t1	MTR_5g031030	30.579	242	151	8	35	262	36	274	3.23e-21	90.9
MS.gene60846.t1	MTR_8g067630	33.486	218	132	6	35	242	30	244	5.19e-21	92.8
MS.gene60846.t1	MTR_4g093040	31.890	254	154	8	5	243	3	252	3.59e-20	90.5
MS.gene60846.t1	MTR_4g093040	38.235	170	90	6	87	243	3	170	1.42e-18	85.5
MS.gene60846.t1	MTR_5g025020	29.600	250	143	10	33	256	39	281	7.04e-17	80.9
MS.gene60846.t1	MTR_5g077100	32.258	217	125	8	59	264	49	254	7.04e-16	77.8
MS.gene60846.t1	MTR_7g063030	31.760	233	134	9	48	261	37	263	3.37e-15	75.9
MS.gene60846.t1	MTR_3g068025	25.899	278	172	8	15	266	6	275	3.69e-15	75.5
MS.gene60846.t1	MTR_7g062940	28.244	262	156	10	22	261	7	258	3.85e-15	75.5
MS.gene60846.t1	MTR_7g063030	30.534	262	147	11	29	261	2	257	4.83e-15	75.1
MS.gene60846.t1	MTR_0015s0030	31.092	238	138	11	38	258	23	251	7.86e-15	74.7
MS.gene60846.t1	MTR_7g115740	30.323	155	98	5	23	171	13	163	1.06e-12	68.2
MS.gene60846.t1	MTR_1g048360	28.283	198	123	7	74	260	71	260	2.97e-12	67.0
MS.gene60846.t1	MTR_7g062890	27.778	270	170	9	16	266	1	264	3.61e-12	66.6
MS.gene60846.t1	MTR_7g062950	27.341	267	164	10	16	261	1	258	1.63e-11	64.7
MS.gene60846.t1	MTR_7g062770	28.692	237	140	9	48	261	33	263	3.13e-11	63.9
MS.gene60846.t1	MTR_7g062750	27.068	266	157	12	22	261	7	261	3.19e-11	63.9
MS.gene60846.t1	MTR_1g099260	28.866	194	123	7	76	260	62	249	5.06e-11	63.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60846.t1	AT5G65600	36.087	230	129	8	35	249	35	261	4.67e-27	110
MS.gene60846.t1	AT5G10530	35.102	245	135	11	35	263	19	255	7.18e-25	104
MS.gene60846.t1	AT5G06740	32.171	258	144	12	22	259	11	257	9.20e-20	89.4
MS.gene60846.t1	AT5G06740	32.171	258	144	12	22	259	23	269	9.63e-20	89.4
MS.gene60846.t1	AT5G55830	30.712	267	158	11	14	260	7	266	2.09e-18	85.1
MS.gene60846.t1	AT4G29050	29.386	228	136	8	54	261	53	275	1.86e-17	82.4
MS.gene60846.t1	AT4G29050	29.386	228	136	8	54	261	39	261	1.90e-17	82.4
MS.gene60846.t1	AT3G08870	26.800	250	157	7	35	260	33	280	3.44e-16	78.6
MS.gene60846.t1	AT3G08870	26.800	250	157	7	35	260	54	301	3.52e-16	78.6
MS.gene60846.t1	AT3G53810	27.273	253	158	8	29	261	18	264	1.59e-15	76.6
MS.gene60846.t1	AT5G03140	29.880	251	161	8	17	256	11	257	4.01e-15	75.5
MS.gene60846.t1	AT2G29220	27.305	282	158	11	16	265	7	273	2.10e-14	73.6
MS.gene60846.t1	AT2G29250	28.235	255	157	9	23	258	14	261	4.41e-14	72.4
MS.gene60846.t1	AT2G43700	28.311	219	126	9	73	268	47	257	7.24e-14	71.6
MS.gene60846.t1	AT1G70110	26.506	249	156	9	39	268	24	264	7.55e-14	71.6
MS.gene60846.t1	AT2G43700	28.037	214	125	8	73	263	23	230	9.61e-14	71.2
MS.gene60846.t1	AT2G43700	28.037	214	125	8	73	263	23	230	9.61e-14	71.2
MS.gene60846.t1	AT2G43700	28.037	214	125	8	73	263	23	230	9.61e-14	71.2
MS.gene60846.t1	AT2G43700	28.037	214	125	8	73	263	23	230	9.61e-14	71.2
MS.gene60846.t1	AT2G37710	27.490	251	156	10	31	261	20	264	1.21e-13	71.2
MS.gene60846.t1	AT5G01540	26.744	258	159	9	30	260	24	278	2.26e-13	70.5
MS.gene60846.t1	AT5G01560	28.807	243	145	8	43	260	35	274	3.25e-13	69.7
MS.gene60846.t1	AT5G01550	25.874	286	175	9	6	260	11	290	6.82e-13	68.9
MS.gene60846.t1	AT4G04960	31.667	240	138	8	36	256	21	253	8.23e-13	68.6
MS.gene60846.t1	AT4G04960	31.535	241	139	8	35	256	20	253	9.59e-13	68.6
MS.gene60846.t1	AT4G02410	25.869	259	166	9	29	267	20	272	1.29e-12	68.2
MS.gene60846.t1	AT3G53380	31.429	210	125	7	59	256	42	244	2.43e-12	67.4
MS.gene60846.t1	AT4G02420	27.444	266	164	11	17	261	6	263	2.61e-12	67.0
MS.gene60846.t1	AT5G60310	25.342	292	172	14	10	276	5	275	1.04e-11	65.5

Find 66 sgRNAs with CRISPR-Local

Find 78 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GGAAACCTTGGAGTTGTTAA+TGG	0.284776	1.4:-73104854	MS.gene60846:CDS
GAAAAGTTTGCAATATTGTT+TGG	0.291665	1.4:+73104464	None:intergenic
AATTCCAACATGTGAGTGTT+TGG	0.311826	1.4:+73104766	None:intergenic
TGACTAACACAACAGAAAAT+AGG	0.328825	1.4:+73105236	None:intergenic
AAAAGTTTGCAATATTGTTT+GGG	0.329321	1.4:+73104465	None:intergenic
AACAGAGTTGGCAGGAATAT+TGG	0.331936	1.4:+73104880	None:intergenic
TAAAGACAGTGAAATGGAAT+AGG	0.341311	1.4:-73104721	MS.gene60846:CDS
ATAAAACACCAGTGCCCATC+TGG	0.359355	1.4:-73105021	MS.gene60846:CDS
GTCCTCACAATCCATTTGTT+GGG	0.372402	1.4:-73104826	MS.gene60846:CDS
ATTCCAACATGTGAGTGTTT+GGG	0.396108	1.4:+73104767	None:intergenic
ATACTAGTTCCACTGGTTCA+TGG	0.408344	1.4:-73104793	MS.gene60846:CDS
TTTCATTAAAGACAGTGAAA+TGG	0.423423	1.4:-73104727	MS.gene60846:CDS
AAACCAATCCTTACGGTGTC+AGG	0.427333	1.4:+73104569	None:intergenic
ATAGTTGAAAAGGTACCATC+TGG	0.449708	1.4:+73104623	None:intergenic
TCAAACTCTACCCCAACAAA+TGG	0.455076	1.4:+73104815	None:intergenic
TGTCTTAGAGAGATTGTCAT+AGG	0.468591	1.4:+73104667	None:intergenic
ACTGAAGTTGGTAACGTTGA+AGG	0.470628	1.4:+73105153	None:intergenic
AGTCCTCACAATCCATTTGT+TGG	0.471870	1.4:-73104827	MS.gene60846:CDS
AAAGACAGTGAAATGGAATA+GGG	0.472851	1.4:-73104720	MS.gene60846:CDS
AACTCTGTTGGTGGAAACCT+TGG	0.476055	1.4:-73104866	MS.gene60846:CDS
CTTCCTGACACCGTAAGGAT+TGG	0.482184	1.4:-73104572	MS.gene60846:CDS
GCAGGAATATTGGCTCGATC+TGG	0.482568	1.4:+73104890	None:intergenic
GAGTTTGATACTAGTTCCAC+TGG	0.484484	1.4:-73104800	MS.gene60846:CDS
TACTAGTTCCACTGGTTCAT+GGG	0.490856	1.4:-73104792	MS.gene60846:CDS
GTTTATTGTCACGATTCCAT+TGG	0.495823	1.4:+73105084	None:intergenic
GACTTGAGCAATAGTTGAAA+AGG	0.505448	1.4:+73104613	None:intergenic
CCCATCTGGGATAGTACCAC+TGG	0.510562	1.4:-73105007	MS.gene60846:CDS
GGATTTACTAGTACTGAAGT+TGG	0.513910	1.4:+73105141	None:intergenic
TTGACTTAAAAGACCATGCA+TGG	0.516932	1.4:+73104504	None:intergenic
GTACTATCCCAGATGGGCAC+TGG	0.526324	1.4:+73105013	None:intergenic
ATTCCTGCCAACTCTGTTGG+TGG	0.528629	1.4:-73104875	MS.gene60846:CDS
GCCAGTGGTACTATCCCAGA+TGG	0.541020	1.4:+73105006	None:intergenic
CAGTGCTTCCTGACACCGTA+AGG	0.541263	1.4:-73104577	MS.gene60846:CDS
AATATTCCTGCCAACTCTGT+TGG	0.548051	1.4:-73104878	MS.gene60846:CDS
AAGGTTTCCACCAACAGAGT+TGG	0.550040	1.4:+73104868	None:intergenic
TTTCCACCAACAGAGTTGGC+AGG	0.550472	1.4:+73104872	None:intergenic
AAATCACGGAACTTCCATGC+AGG	0.555393	1.4:+73105110	None:intergenic
ATGAAGACAAGTCCACTAGC+AGG	0.558627	1.4:+73104923	None:intergenic
ATCGTGACAATAAACAATCC+AGG	0.562463	1.4:-73105076	MS.gene60846:CDS
ATCGATGAAACCAAATCAGA+TGG	0.568016	1.4:+73104439	None:intergenic
GGAATATTGGCTCGATCTGG+TGG	0.573690	1.4:+73104893	None:intergenic
TAAAAGACCATGCATGGAGG+TGG	0.581006	1.4:+73104510	None:intergenic
GTTGTTGTATATTACCCAGA+TGG	0.588747	1.4:-73104638	MS.gene60846:CDS
GTCTACAACTTTGAATGTGA+AGG	0.589624	1.4:+73104961	None:intergenic
TCCTCACAATCCATTTGTTG+GGG	0.590344	1.4:-73104825	MS.gene60846:CDS
AATTACACCACCTCCATGCA+TGG	0.590958	1.4:-73104517	MS.gene60846:CDS
ACCCCAACAAATGGATTGTG+AGG	0.592855	1.4:+73104824	None:intergenic
GATCCCAAACACTCACATGT+TGG	0.594093	1.4:-73104770	MS.gene60846:CDS
TGTTTCCATTAACAACTCCA+AGG	0.599188	1.4:+73104849	None:intergenic
GATTCCATTGGATAAAATCA+CGG	0.599248	1.4:+73105096	None:intergenic
GTTTGCAATATTGTTTGGGG+TGG	0.603693	1.4:+73104469	None:intergenic
TAAAACACCAGTGCCCATCT+GGG	0.609108	1.4:-73105020	MS.gene60846:CDS
GAATAGGGTGAGTGGCGCCT+TGG	0.611314	1.4:-73104705	MS.gene60846:CDS
ATGGAGGTGGTGTAATTGAC+GGG	0.612662	1.4:+73104523	None:intergenic
ATTTGTTGGAAAGAAAGCCA+TGG	0.619705	1.4:+73105264	None:intergenic
CATGGAGGTGGTGTAATTGA+CGG	0.621874	1.4:+73104522	None:intergenic
TTGACGGGCAGCTGTTGTCG+AGG	0.628538	1.4:+73104538	None:intergenic
TACAACTTTGAATGTGAAGG+AGG	0.642965	1.4:+73104964	None:intergenic
AATCACGGAACTTCCATGCA+GGG	0.643209	1.4:+73105111	None:intergenic
GTGAAATGGAATAGGGTGAG+TGG	0.643420	1.4:-73104713	MS.gene60846:CDS
CCAGTGGTACTATCCCAGAT+GGG	0.650654	1.4:+73105007	None:intergenic
TAGTTGAAAAGGTACCATCT+GGG	0.650948	1.4:+73104624	None:intergenic
TTTGGGATCCCATGAACCAG+TGG	0.654947	1.4:+73104784	None:intergenic
GAAGCTAGCAACGTTGCCAG+TGG	0.662249	1.4:+73104991	None:intergenic
AAAGTTTGCAATATTGTTTG+GGG	0.709279	1.4:+73104466	None:intergenic
ACTTAAAAGACCATGCATGG+AGG	0.715397	1.4:+73104507	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAAAGTTTGCAATATTGTTT+GGG	+	chr1.4:73105254-73105273	None:intergenic	20.0%
!	AAAGTTTGCAATATTGTTTG+GGG	+	chr1.4:73105253-73105272	None:intergenic	25.0%
!	GAAAAGTTTGCAATATTGTT+TGG	+	chr1.4:73105255-73105274	None:intergenic	25.0%
!	TTTCATTAAAGACAGTGAAA+TGG	-	chr1.4:73104989-73105008	MS.gene60846:CDS	25.0%
!!!	GAAAATAGGTTTTGATTTGT+TGG	+	chr1.4:73104469-73104488	None:intergenic	25.0%
	AAAGACAGTGAAATGGAATA+GGG	-	chr1.4:73104996-73105015	MS.gene60846:CDS	30.0%
	GATTCCATTGGATAAAATCA+CGG	+	chr1.4:73104623-73104642	None:intergenic	30.0%
	TAAAGACAGTGAAATGGAAT+AGG	-	chr1.4:73104995-73105014	MS.gene60846:CDS	30.0%
	TGACTAACACAACAGAAAAT+AGG	+	chr1.4:73104483-73104502	None:intergenic	30.0%
!	ATTCGACCTACAACATTTTT+AGG	+	chr1.4:73104670-73104689	None:intergenic	30.0%
!	GGAAATTTTTACATTCACCA+AGG	+	chr1.4:73105031-73105050	None:intergenic	30.0%
!	TTCGACCTACAACATTTTTA+GGG	+	chr1.4:73104669-73104688	None:intergenic	30.0%
!!	ATGGTCTTTTAAGTCAAACT+TGG	-	chr1.4:73105218-73105237	MS.gene60846:CDS	30.0%
	AATTCCAACATGTGAGTGTT+TGG	+	chr1.4:73104953-73104972	None:intergenic	35.0%
	AGCAGAAAAACCAATCCTTA+CGG	+	chr1.4:73105157-73105176	None:intergenic	35.0%
	ATCGTGACAATAAACAATCC+AGG	-	chr1.4:73104640-73104659	MS.gene60846:CDS	35.0%
	ATTCCAACATGTGAGTGTTT+GGG	+	chr1.4:73104952-73104971	None:intergenic	35.0%
	GACTTGAGCAATAGTTGAAA+AGG	+	chr1.4:73105106-73105125	None:intergenic	35.0%
	GTCTACAACTTTGAATGTGA+AGG	+	chr1.4:73104758-73104777	None:intergenic	35.0%
	GTTGTTGTATATTACCCAGA+TGG	-	chr1.4:73105078-73105097	MS.gene60846:CDS	35.0%
	GTTTATTGTCACGATTCCAT+TGG	+	chr1.4:73104635-73104654	None:intergenic	35.0%
	TACAACTTTGAATGTGAAGG+AGG	+	chr1.4:73104755-73104774	None:intergenic	35.0%
	TGTCTTAGAGAGATTGTCAT+AGG	+	chr1.4:73105052-73105071	None:intergenic	35.0%
	TGTTTCCATTAACAACTCCA+AGG	+	chr1.4:73104870-73104889	None:intergenic	35.0%
	TTGACTTAAAAGACCATGCA+TGG	+	chr1.4:73105215-73105234	None:intergenic	35.0%
!	AGTTCCGTGATTTTATCCAA+TGG	-	chr1.4:73104616-73104635	MS.gene60846:CDS	35.0%
!	GGATTTACTAGTACTGAAGT+TGG	+	chr1.4:73104578-73104597	None:intergenic	35.0%
!!	ATAGTTGAAAAGGTACCATC+TGG	+	chr1.4:73105096-73105115	None:intergenic	35.0%
!!	TAGTTGAAAAGGTACCATCT+GGG	+	chr1.4:73105095-73105114	None:intergenic	35.0%
!!!	GAAGGAAACTGTTTTTTGTG+AGG	+	chr1.4:73104548-73104567	None:intergenic	35.0%
	AAAAAAATGACGCCTGCTAG+TGG	-	chr1.4:73104781-73104800	MS.gene60846:CDS	40.0%
	AACAGAGTTGGCAGGAATAT+TGG	+	chr1.4:73104839-73104858	None:intergenic	40.0%
	AATATTCCTGCCAACTCTGT+TGG	-	chr1.4:73104838-73104857	MS.gene60846:CDS	40.0%
	ACTTAAAAGACCATGCATGG+AGG	+	chr1.4:73105212-73105231	None:intergenic	40.0%
	AGTCCTCACAATCCATTTGT+TGG	-	chr1.4:73104889-73104908	MS.gene60846:CDS	40.0%
	GAGTTTGATACTAGTTCCAC+TGG	-	chr1.4:73104916-73104935	MS.gene60846:CDS	40.0%
	GGAAACCTTGGAGTTGTTAA+TGG	-	chr1.4:73104862-73104881	MS.gene60846:CDS	40.0%
	GGAGACCCTAAAAATGTTGT+AGG	-	chr1.4:73104661-73104680	MS.gene60846:CDS	40.0%
	GTCCTCACAATCCATTTGTT+GGG	-	chr1.4:73104890-73104909	MS.gene60846:CDS	40.0%
	GTTTGCAATATTGTTTGGGG+TGG	+	chr1.4:73105250-73105269	None:intergenic	40.0%
	TCAAACTCTACCCCAACAAA+TGG	+	chr1.4:73104904-73104923	None:intergenic	40.0%
!	AAATCCAGTTTTTCCCTGCA+TGG	-	chr1.4:73104592-73104611	MS.gene60846:CDS	40.0%
!	TCCTCACAATCCATTTGTTG+GGG	-	chr1.4:73104891-73104910	MS.gene60846:CDS	40.0%
!!	ACTGAAGTTGGTAACGTTGA+AGG	+	chr1.4:73104566-73104585	None:intergenic	40.0%
!!	ATACTAGTTCCACTGGTTCA+TGG	-	chr1.4:73104923-73104942	MS.gene60846:CDS	40.0%
!!	TACTAGTTCCACTGGTTCAT+GGG	-	chr1.4:73104924-73104943	MS.gene60846:CDS	40.0%
!!!	ACAACATTTTTAGGGTCTCC+TGG	+	chr1.4:73104661-73104680	None:intergenic	40.0%
	AAACCAATCCTTACGGTGTC+AGG	+	chr1.4:73105150-73105169	None:intergenic	45.0%
	AAATCACGGAACTTCCATGC+AGG	+	chr1.4:73104609-73104628	None:intergenic	45.0%
	AAGGTTTCCACCAACAGAGT+TGG	+	chr1.4:73104851-73104870	None:intergenic	45.0%
	AATCACGGAACTTCCATGCA+GGG	+	chr1.4:73104608-73104627	None:intergenic	45.0%
	AATTACACCACCTCCATGCA+TGG	-	chr1.4:73105199-73105218	MS.gene60846:CDS	45.0%
	ACTTCCATGCAGGGAAAAAC+TGG	+	chr1.4:73104599-73104618	None:intergenic	45.0%
	ATAAAACACCAGTGCCCATC+TGG	-	chr1.4:73104695-73104714	MS.gene60846:CDS	45.0%
	ATGAAGACAAGTCCACTAGC+AGG	+	chr1.4:73104796-73104815	None:intergenic	45.0%
	ATGGAGGTGGTGTAATTGAC+GGG	+	chr1.4:73105196-73105215	None:intergenic	45.0%
	CATGGAGGTGGTGTAATTGA+CGG	+	chr1.4:73105197-73105216	None:intergenic	45.0%
	GATCCCAAACACTCACATGT+TGG	-	chr1.4:73104946-73104965	MS.gene60846:CDS	45.0%
	GTGAAATGGAATAGGGTGAG+TGG	-	chr1.4:73105003-73105022	MS.gene60846:CDS	45.0%
	TAAAACACCAGTGCCCATCT+GGG	-	chr1.4:73104696-73104715	MS.gene60846:CDS	45.0%
	TAAAAGACCATGCATGGAGG+TGG	+	chr1.4:73105209-73105228	None:intergenic	45.0%
!	AACTCTGTTGGTGGAAACCT+TGG	-	chr1.4:73104850-73104869	MS.gene60846:CDS	45.0%
!!	ACCCCAACAAATGGATTGTG+AGG	+	chr1.4:73104895-73104914	None:intergenic	45.0%
	ATTCCTGCCAACTCTGTTGG+TGG	-	chr1.4:73104841-73104860	MS.gene60846:CDS	50.0%
	CCAGTGGTACTATCCCAGAT+GGG	+	chr1.4:73104712-73104731	None:intergenic	50.0%
	CTTCCTGACACCGTAAGGAT+TGG	-	chr1.4:73105144-73105163	MS.gene60846:CDS	50.0%
	TTTCCACCAACAGAGTTGGC+AGG	+	chr1.4:73104847-73104866	None:intergenic	50.0%
!	TTTGGGATCCCATGAACCAG+TGG	+	chr1.4:73104935-73104954	None:intergenic	50.0%
!!	GCAGGAATATTGGCTCGATC+TGG	+	chr1.4:73104829-73104848	None:intergenic	50.0%
!!	GGAATATTGGCTCGATCTGG+TGG	+	chr1.4:73104826-73104845	None:intergenic	50.0%
!!!	TGGGCACTGGTGTTTTATGC+AGG	+	chr1.4:73104693-73104712	None:intergenic	50.0%
	CAGTGCTTCCTGACACCGTA+AGG	-	chr1.4:73105139-73105158	MS.gene60846:CDS	55.0%
	GAAGCTAGCAACGTTGCCAG+TGG	+	chr1.4:73104728-73104747	None:intergenic	55.0%
	GCCAGTGGTACTATCCCAGA+TGG	+	chr1.4:73104713-73104732	None:intergenic	55.0%
	GTACTATCCCAGATGGGCAC+TGG	+	chr1.4:73104706-73104725	None:intergenic	55.0%
!	CCCATCTGGGATAGTACCAC+TGG	-	chr1.4:73104709-73104728	MS.gene60846:CDS	55.0%
	GAATAGGGTGAGTGGCGCCT+TGG	-	chr1.4:73105011-73105030	MS.gene60846:CDS	60.0%
!	TTGACGGGCAGCTGTTGTCG+AGG	+	chr1.4:73105181-73105200	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	73104454	73105284	73104454	ID=MS.gene60846
chr1.4	mRNA	73104454	73105284	73104454	ID=MS.gene60846.t1;Parent=MS.gene60846
chr1.4	exon	73104454	73105284	73104454	ID=MS.gene60846.t1.exon1;Parent=MS.gene60846.t1
chr1.4	CDS	73104454	73105284	73104454	ID=cds.MS.gene60846.t1;Parent=MS.gene60846.t1

Gene Sequence

>MS.gene60846

ATGGCTTTCTTTCCAACAAATCAAAACCTATTTTCTGTTGTGTTAGTCATTTTCACAACTTCATTTCTCTTGCTAGCAACAGAACTAGTGACCTCACAAAAAACAGTTTCCTTCAACGTTACCAACTTCAGTACTAGTAAATCCAGTTTTTCCCTGCATGGAAGTTCCGTGATTTTATCCAATGGAATCGTGACAATAAACAATCCAGGAGACCCTAAAAATGTTGTAGGTCGAATCCTGCATAAAACACCAGTGCCCATCTGGGATAGTACCACTGGCAACGTTGCTAGCTTCATCACCTCCTTCACATTCAAAGTTGTAGACTACAAAAAAATGACGCCTGCTAGTGGACTTGTCTTCATTCTTACACCACCAGATCGAGCCAATATTCCTGCCAACTCTGTTGGTGGAAACCTTGGAGTTGTTAATGGAAACAGTCCTCACAATCCATTTGTTGGGGTAGAGTTTGATACTAGTTCCACTGGTTCATGGGATCCCAAACACTCACATGTTGGAATTGATGTCAACTCTTTGATTTCATTAAAGACAGTGAAATGGAATAGGGTGAGTGGCGCCTTGGTGAATGTAAAAATTTCCTATGACAATCTCTCTAAGACATTGAATGTTGTTGTATATTACCCAGATGGTACCTTTTCAACTATTGCTCAAGTCGTTGATTTGAAAGCAGTGCTTCCTGACACCGTAAGGATTGGTTTTTCTGCTGCCTCGACAACAGCTGCCCGTCAATTACACCACCTCCATGCATGGTCTTTTAAGTCAAACTTGGACACAACCACCCCAAACAATATTGCAAACTTTTCAGCCATCTGA

Protein sequence

>MS.gene60846.t1

MAFFPTNQNLFSVVLVIFTTSFLLLATELVTSQKTVSFNVTNFSTSKSSFSLHGSSVILSNGIVTINNPGDPKNVVGRILHKTPVPIWDSTTGNVASFITSFTFKVVDYKKMTPASGLVFILTPPDRANIPANSVGGNLGVVNGNSPHNPFVGVEFDTSSTGSWDPKHSHVGIDVNSLISLKTVKWNRVSGALVNVKISYDNLSKTLNVVVYYPDGTFSTIAQVVDLKAVLPDTVRIGFSAASTTAARQLHHLHAWSFKSNLDTTTPNNIANFSAI