Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60847.t1 | XP_003599063.1 | 81.6 | 272 | 46 | 2 | 1 | 270 | 1 | 270 | 3.60E-116 | 427.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60847.t1 | P16270 | 57.1 | 273 | 98 | 10 | 1 | 270 | 1 | 257 | 9.0e-68 | 258.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60847.t1 | G7J1U2 | 81.6 | 272 | 46 | 2 | 1 | 270 | 1 | 270 | 2.6e-116 | 427.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04932 | MS.gene60847 | 0.849886 | 2.42E-60 | -1.69E-46 |
| MS.gene050426 | MS.gene60847 | 0.802184 | 6.33E-49 | -1.69E-46 |
| MS.gene052011 | MS.gene60847 | 0.804946 | 1.69E-49 | -1.69E-46 |
| MS.gene052223 | MS.gene60847 | 0.829418 | 5.21E-55 | -1.69E-46 |
| MS.gene052702 | MS.gene60847 | 0.854823 | 9.52E-62 | -1.69E-46 |
| MS.gene052706 | MS.gene60847 | 0.810477 | 1.13E-50 | -1.69E-46 |
| MS.gene054277 | MS.gene60847 | 0.807995 | 3.85E-50 | -1.69E-46 |
| MS.gene055601 | MS.gene60847 | 0.831188 | 1.92E-55 | -1.69E-46 |
| MS.gene056330 | MS.gene60847 | 0.81524 | 1.02E-51 | -1.69E-46 |
| MS.gene056590 | MS.gene60847 | 0.801734 | 7.83E-49 | -1.69E-46 |
| MS.gene056591 | MS.gene60847 | 0.800878 | 1.17E-48 | -1.69E-46 |
| MS.gene056688 | MS.gene60847 | 0.807312 | 5.38E-50 | -1.69E-46 |
| MS.gene056690 | MS.gene60847 | 0.837677 | 4.51E-57 | -1.69E-46 |
| MS.gene056691 | MS.gene60847 | 0.823344 | 1.46E-53 | -1.69E-46 |
| MS.gene056697 | MS.gene60847 | 0.832134 | 1.12E-55 | -1.69E-46 |
| MS.gene056899 | MS.gene60847 | 0.836223 | 1.06E-56 | -1.69E-46 |
| MS.gene056920 | MS.gene60847 | 0.810145 | 1.33E-50 | -1.69E-46 |
| MS.gene058381 | MS.gene60847 | 0.814917 | 1.21E-51 | -1.69E-46 |
| MS.gene059043 | MS.gene60847 | 0.80425 | 2.36E-49 | -1.69E-46 |
| MS.gene059402 | MS.gene60847 | 0.830433 | 2.95E-55 | -1.69E-46 |
| MS.gene060087 | MS.gene60847 | 0.83967 | 1.38E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60847.t1 | MTR_3g027280 | 81.618 | 272 | 46 | 2 | 1 | 270 | 1 | 270 | 5.33e-156 | 436 |
| MS.gene60847.t1 | MTR_1g090957 | 79.630 | 270 | 43 | 3 | 1 | 270 | 1 | 258 | 8.13e-148 | 415 |
| MS.gene60847.t1 | MTR_1g090937 | 73.063 | 271 | 64 | 5 | 1 | 270 | 1 | 263 | 2.51e-136 | 386 |
| MS.gene60847.t1 | MTR_1g090930 | 74.359 | 273 | 61 | 4 | 1 | 270 | 1 | 267 | 1.03e-134 | 382 |
| MS.gene60847.t1 | MTR_3g054170 | 49.813 | 267 | 111 | 10 | 6 | 265 | 3 | 253 | 3.78e-69 | 215 |
| MS.gene60847.t1 | MTR_3g054180 | 50.186 | 269 | 109 | 10 | 6 | 265 | 7 | 259 | 2.69e-67 | 210 |
| MS.gene60847.t1 | MTR_0684s0020 | 47.826 | 276 | 126 | 8 | 1 | 271 | 1 | 263 | 3.49e-64 | 203 |
| MS.gene60847.t1 | MTR_0163s0020 | 47.826 | 276 | 126 | 8 | 1 | 271 | 2 | 264 | 4.28e-64 | 202 |
| MS.gene60847.t1 | MTR_1g090973 | 46.931 | 277 | 122 | 13 | 1 | 268 | 1 | 261 | 9.46e-63 | 199 |
| MS.gene60847.t1 | MTR_3g054200 | 48.134 | 268 | 114 | 10 | 6 | 265 | 3 | 253 | 9.32e-62 | 196 |
| MS.gene60847.t1 | MTR_1g090943 | 45.149 | 268 | 133 | 8 | 1 | 264 | 1 | 258 | 1.85e-59 | 191 |
| MS.gene60847.t1 | MTR_3g047140 | 45.263 | 285 | 136 | 12 | 1 | 278 | 1 | 272 | 1.86e-58 | 188 |
| MS.gene60847.t1 | MTR_1g090960 | 42.553 | 282 | 101 | 10 | 1 | 270 | 1 | 233 | 6.28e-50 | 165 |
| MS.gene60847.t1 | MTR_5g031120 | 38.768 | 276 | 125 | 17 | 23 | 265 | 14 | 278 | 2.95e-34 | 125 |
| MS.gene60847.t1 | MTR_8g023510 | 37.545 | 277 | 140 | 13 | 1 | 264 | 1 | 257 | 3.62e-34 | 125 |
| MS.gene60847.t1 | MTR_8g068050 | 36.940 | 268 | 138 | 13 | 14 | 265 | 20 | 272 | 9.99e-32 | 124 |
| MS.gene60847.t1 | MTR_8g067980 | 39.823 | 226 | 114 | 11 | 54 | 265 | 41 | 258 | 1.02e-31 | 118 |
| MS.gene60847.t1 | MTR_5g031100 | 36.000 | 275 | 133 | 14 | 23 | 265 | 14 | 277 | 1.12e-31 | 119 |
| MS.gene60847.t1 | MTR_8g068040 | 37.931 | 261 | 126 | 14 | 23 | 265 | 18 | 260 | 2.65e-31 | 117 |
| MS.gene60847.t1 | MTR_8g067940 | 37.226 | 274 | 141 | 16 | 15 | 267 | 18 | 281 | 2.57e-30 | 115 |
| MS.gene60847.t1 | MTR_5g031160 | 36.797 | 231 | 121 | 13 | 54 | 265 | 62 | 286 | 1.65e-29 | 113 |
| MS.gene60847.t1 | MTR_8g068030 | 36.330 | 267 | 126 | 16 | 23 | 265 | 18 | 264 | 6.33e-29 | 111 |
| MS.gene60847.t1 | MTR_5g031140 | 35.968 | 253 | 132 | 14 | 31 | 265 | 45 | 285 | 8.62e-29 | 111 |
| MS.gene60847.t1 | MTR_8g067990 | 37.333 | 225 | 119 | 11 | 54 | 264 | 41 | 257 | 3.36e-28 | 109 |
| MS.gene60847.t1 | MTR_4g023810 | 34.979 | 243 | 133 | 12 | 30 | 264 | 27 | 252 | 4.60e-28 | 108 |
| MS.gene60847.t1 | MTR_5g031090 | 35.200 | 250 | 140 | 11 | 34 | 267 | 32 | 275 | 1.46e-26 | 105 |
| MS.gene60847.t1 | MTR_3g463370 | 32.422 | 256 | 117 | 6 | 18 | 264 | 12 | 220 | 4.70e-26 | 103 |
| MS.gene60847.t1 | MTR_5g031030 | 36.290 | 248 | 136 | 12 | 34 | 267 | 35 | 274 | 2.26e-25 | 102 |
| MS.gene60847.t1 | MTR_8g067960 | 37.281 | 228 | 119 | 11 | 54 | 267 | 24 | 241 | 1.61e-24 | 99.0 |
| MS.gene60847.t1 | MTR_4g093080 | 32.955 | 264 | 147 | 13 | 18 | 265 | 9 | 258 | 2.17e-23 | 100 |
| MS.gene60847.t1 | MTR_7g115740 | 32.432 | 259 | 145 | 12 | 24 | 265 | 14 | 259 | 9.31e-21 | 92.4 |
| MS.gene60847.t1 | MTR_1g014240 | 33.333 | 255 | 138 | 14 | 35 | 270 | 37 | 278 | 2.03e-20 | 91.3 |
| MS.gene60847.t1 | MTR_4g093040 | 32.852 | 277 | 151 | 13 | 1 | 259 | 1 | 260 | 2.41e-20 | 91.3 |
| MS.gene60847.t1 | MTR_8g067720 | 31.873 | 251 | 143 | 11 | 36 | 265 | 13 | 256 | 3.44e-19 | 87.8 |
| MS.gene60847.t1 | MTR_4g093040 | 36.111 | 180 | 100 | 7 | 93 | 259 | 1 | 178 | 1.36e-18 | 85.9 |
| MS.gene60847.t1 | MTR_4g056360 | 29.242 | 277 | 137 | 12 | 1 | 264 | 1 | 231 | 6.94e-18 | 81.6 |
| MS.gene60847.t1 | MTR_4g056320 | 33.577 | 274 | 125 | 13 | 1 | 264 | 1 | 227 | 2.39e-17 | 80.1 |
| MS.gene60847.t1 | MTR_8g067735 | 30.303 | 264 | 156 | 14 | 18 | 265 | 26 | 277 | 5.34e-17 | 81.3 |
| MS.gene60847.t1 | MTR_8g067630 | 31.416 | 226 | 132 | 10 | 35 | 248 | 30 | 244 | 2.56e-16 | 79.3 |
| MS.gene60847.t1 | MTR_8g067930 | 29.545 | 264 | 159 | 11 | 22 | 270 | 11 | 262 | 2.61e-16 | 79.3 |
| MS.gene60847.t1 | MTR_4g093110 | 31.387 | 274 | 144 | 18 | 14 | 265 | 12 | 263 | 7.25e-15 | 74.7 |
| MS.gene60847.t1 | MTR_4g093140 | 29.225 | 284 | 161 | 15 | 1 | 265 | 1 | 263 | 1.58e-14 | 73.9 |
| MS.gene60847.t1 | MTR_4g093070 | 29.317 | 249 | 141 | 13 | 36 | 265 | 33 | 265 | 8.09e-14 | 71.6 |
| MS.gene60847.t1 | MTR_4g056380 | 39.806 | 103 | 58 | 3 | 176 | 275 | 105 | 206 | 2.09e-13 | 68.2 |
| MS.gene60847.t1 | MTR_8g067690 | 30.928 | 194 | 119 | 8 | 86 | 265 | 101 | 293 | 8.18e-13 | 68.9 |
| MS.gene60847.t1 | MTR_7g115740 | 33.117 | 154 | 87 | 7 | 24 | 170 | 14 | 158 | 2.19e-11 | 64.3 |
| MS.gene60847.t1 | MTR_3g007870 | 28.571 | 280 | 164 | 12 | 11 | 277 | 2 | 258 | 7.56e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60847.t1 | AT5G10530 | 35.249 | 261 | 134 | 14 | 23 | 265 | 10 | 253 | 1.60e-22 | 97.4 |
| MS.gene60847.t1 | AT5G65600 | 33.051 | 236 | 134 | 9 | 33 | 253 | 33 | 259 | 9.63e-22 | 95.1 |
| MS.gene60847.t1 | AT5G55830 | 31.496 | 254 | 133 | 13 | 36 | 265 | 31 | 267 | 1.10e-13 | 71.2 |
| MS.gene60847.t1 | AT4G02410 | 28.682 | 258 | 142 | 13 | 31 | 262 | 22 | 263 | 3.92e-11 | 63.9 |
Find 73 sgRNAs with CRISPR-Local
Find 74 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCATCAGTTGGAGCGTTTC+CGG | 0.208844 | 1.4:+73113647 | None:intergenic |
| AATATGGTACCTCATAGATT+TGG | 0.272536 | 1.4:+73113485 | None:intergenic |
| TAACCCCACCCGTGTCCCTT+TGG | 0.331370 | 1.4:-73113728 | MS.gene60847:CDS |
| GAAGGAAATGTCAGAGCATT+AGG | 0.331482 | 1.4:+73113861 | None:intergenic |
| AATGCTTACAATCAATTTGT+TGG | 0.337940 | 1.4:-73113543 | MS.gene60847:CDS |
| ATATCTGGTGCTTCAGTAAC+TGG | 0.354584 | 1.4:-73113261 | MS.gene60847:CDS |
| AACCCCACCCGTGTCCCTTT+GGG | 0.358018 | 1.4:-73113727 | MS.gene60847:CDS |
| CTCATAGATTTGGGATCATA+AGG | 0.359980 | 1.4:+73113495 | None:intergenic |
| AACAACACTCAATGTGTTAG+AGG | 0.369181 | 1.4:+73113368 | None:intergenic |
| AGTTGACGTTGGTTCCAATA+TGG | 0.371704 | 1.4:+73113469 | None:intergenic |
| AATGCTCTGACATTTCCTTC+TGG | 0.381773 | 1.4:-73113858 | MS.gene60847:CDS |
| TTTCTCTCAAGGTCATGAAA+TGG | 0.388433 | 1.4:-73113440 | MS.gene60847:CDS |
| AAATCTATGAGGTACCATAT+TGG | 0.393883 | 1.4:-73113483 | MS.gene60847:CDS |
| ACGGTTAGGTTTGGTATATC+TGG | 0.400648 | 1.4:-73113276 | MS.gene60847:CDS |
| GATCATAAGGATTGGTATAA+AGG | 0.401771 | 1.4:+73113508 | None:intergenic |
| AACTCAGAAAGTGCACGTTT+TGG | 0.408486 | 1.4:-73113582 | MS.gene60847:CDS |
| ATACCAAACCTAACCGTGTT+GGG | 0.410779 | 1.4:+73113282 | None:intergenic |
| ATATGGTACCTCATAGATTT+GGG | 0.415491 | 1.4:+73113486 | None:intergenic |
| CTGTACTCCCCAACACGGTT+AGG | 0.429988 | 1.4:-73113290 | MS.gene60847:CDS |
| TTCTCTCAAGGTCATGAAAT+GGG | 0.430289 | 1.4:-73113439 | MS.gene60847:CDS |
| GACAAAGCTAGCATCATTGC+CGG | 0.437316 | 1.4:+73113698 | None:intergenic |
| AAGCGTGAGAAAACTCCTTC+AGG | 0.438172 | 1.4:-73113780 | MS.gene60847:CDS |
| CTCCCCAACACGGTTAGGTT+TGG | 0.440223 | 1.4:-73113285 | MS.gene60847:CDS |
| ATGCTCAAACGTTAAACAAT+GGG | 0.443162 | 1.4:-73113818 | MS.gene60847:CDS |
| GTCCCAAAGGGACACGGGTG+GGG | 0.450544 | 1.4:+73113725 | None:intergenic |
| AAACGTGCACTTTCTGAGTT+GGG | 0.453097 | 1.4:+73113585 | None:intergenic |
| ACTTGGTGAAATTGAAAGAA+AGG | 0.469933 | 1.4:+73113889 | None:intergenic |
| CAGAGCATTAGGAGTGAACT+TGG | 0.474972 | 1.4:+73113872 | None:intergenic |
| CTTGGTGAAATTGAAAGAAA+GGG | 0.478623 | 1.4:+73113890 | None:intergenic |
| AAAACGTGCACTTTCTGAGT+TGG | 0.481047 | 1.4:+73113584 | None:intergenic |
| ACCGGAAACGCTCCAACTGA+TGG | 0.487866 | 1.4:-73113648 | MS.gene60847:CDS |
| CAAATCAACGATTTGAGCAA+TGG | 0.492987 | 1.4:+73113317 | None:intergenic |
| GTTAAGATACGACCTGTACT+TGG | 0.493996 | 1.4:+73113747 | None:intergenic |
| CCTTCTGGTATAACCTTCCA+AGG | 0.495247 | 1.4:-73113843 | MS.gene60847:CDS |
| TCAAGGTCATGAAATGGGAA+TGG | 0.510357 | 1.4:-73113434 | MS.gene60847:CDS |
| AAGTGCTGAATGACCATGAA+TGG | 0.510801 | 1.4:+73113223 | None:intergenic |
| CAGCACATGACATCCATTCA+TGG | 0.511954 | 1.4:-73113236 | MS.gene60847:CDS |
| TGTCCCAAAGGGACACGGGT+GGG | 0.512215 | 1.4:+73113724 | None:intergenic |
| TGTGTTAGAGGGAGAGTCAT+AGG | 0.513568 | 1.4:+73113380 | None:intergenic |
| CCTAAAACAAGTTCATGAGT+TGG | 0.516836 | 1.4:+73113969 | None:intergenic |
| CAAGGTCATGAAATGGGAAT+GGG | 0.518239 | 1.4:-73113433 | MS.gene60847:CDS |
| GGCAGTGTCCCAAAGGGACA+CGG | 0.518402 | 1.4:+73113719 | None:intergenic |
| CAACTCTTTAATTTCTCTCA+AGG | 0.521126 | 1.4:-73113451 | MS.gene60847:CDS |
| AAGAACATCAATCCATCAGT+TGG | 0.521731 | 1.4:+73113636 | None:intergenic |
| GTGTCCCTTTGGGACACTGC+CGG | 0.527921 | 1.4:-73113717 | MS.gene60847:CDS |
| GGTCTCTACTACGAATGAAA+AGG | 0.540214 | 1.4:+73113671 | None:intergenic |
| CGTTTGAGCATCCCCTTGGA+AGG | 0.543808 | 1.4:+73113830 | None:intergenic |
| AGATTTGGGATCATAAGGAT+TGG | 0.548372 | 1.4:+73113500 | None:intergenic |
| CTTATGATCCCAAATCTATG+AGG | 0.558220 | 1.4:-73113494 | MS.gene60847:CDS |
| TTAACGTTTGAGCATCCCCT+TGG | 0.561443 | 1.4:+73113826 | None:intergenic |
| CTTCTGGTATAACCTTCCAA+GGG | 0.561608 | 1.4:-73113842 | MS.gene60847:CDS |
| CATTGCCGGCAGTGTCCCAA+AGG | 0.569263 | 1.4:+73113712 | None:intergenic |
| GTGTCCCAAAGGGACACGGG+TGG | 0.577507 | 1.4:+73113723 | None:intergenic |
| GATGCTCAAACGTTAAACAA+TGG | 0.578620 | 1.4:-73113819 | MS.gene60847:CDS |
| TATACCAAACCTAACCGTGT+TGG | 0.579838 | 1.4:+73113281 | None:intergenic |
| TCATTCGTAGTAGAGACCAC+CGG | 0.586383 | 1.4:-73113666 | MS.gene60847:CDS |
| AGAAATTAAAGAGTTGACGT+TGG | 0.590878 | 1.4:+73113458 | None:intergenic |
| ATGAAATGGGAATGGGTGAG+TGG | 0.593464 | 1.4:-73113426 | MS.gene60847:CDS |
| GGTACACTTAAACCAAGTAC+AGG | 0.597115 | 1.4:-73113759 | MS.gene60847:CDS |
| CCTTGGAAGGTTATACCAGA+AGG | 0.602083 | 1.4:+73113843 | None:intergenic |
| GCAGTGTCCCAAAGGGACAC+GGG | 0.602408 | 1.4:+73113720 | None:intergenic |
| GGTGGAATCACAGTGTCTTG+TGG | 0.603572 | 1.4:+73113606 | None:intergenic |
| ATCAGTTGGAGCGTTTCCGG+TGG | 0.608436 | 1.4:+73113650 | None:intergenic |
| CGTGCACTTTCTGAGTTGGG+TGG | 0.613896 | 1.4:+73113588 | None:intergenic |
| TACCAAACCTAACCGTGTTG+GGG | 0.618772 | 1.4:+73113283 | None:intergenic |
| ACAACACTCAATGTGTTAGA+GGG | 0.619552 | 1.4:+73113369 | None:intergenic |
| ATTGCCGGCAGTGTCCCAAA+GGG | 0.621107 | 1.4:+73113713 | None:intergenic |
| TATAGCTTGTAACTTGTCTG+AGG | 0.638098 | 1.4:+73113169 | None:intergenic |
| GTTGTTGTCACTTATGACAA+TGG | 0.638598 | 1.4:-73113351 | MS.gene60847:CDS |
| CTTGGTTTAAGTGTACCTGA+AGG | 0.657510 | 1.4:+73113765 | None:intergenic |
| GAAAACTGTACTCCCCAACA+CGG | 0.658624 | 1.4:-73113295 | MS.gene60847:CDS |
| TTCTGGTATAACCTTCCAAG+GGG | 0.688779 | 1.4:-73113841 | MS.gene60847:CDS |
| TGCTCAAACGTTAAACAATG+GGG | 0.705167 | 1.4:-73113817 | MS.gene60847:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AATGCTTACAATCAATTTGT+TGG | - | chr1.4:73113614-73113633 | MS.gene60847:CDS | 25.0% |
| AATATGGTACCTCATAGATT+TGG | + | chr1.4:73113675-73113694 | None:intergenic | 30.0% | |
| AGAAATTAAAGAGTTGACGT+TGG | + | chr1.4:73113702-73113721 | None:intergenic | 30.0% | |
| ATATGGTACCTCATAGATTT+GGG | + | chr1.4:73113674-73113693 | None:intergenic | 30.0% | |
| ATGCTCAAACGTTAAACAAT+GGG | - | chr1.4:73113339-73113358 | MS.gene60847:CDS | 30.0% | |
| CTTGGTGAAATTGAAAGAAA+GGG | + | chr1.4:73113270-73113289 | None:intergenic | 30.0% | |
| ! | AAATCTATGAGGTACCATAT+TGG | - | chr1.4:73113674-73113693 | MS.gene60847:CDS | 30.0% |
| ! | ACTTGGTGAAATTGAAAGAA+AGG | + | chr1.4:73113271-73113290 | None:intergenic | 30.0% |
| ! | CAACTCTTTAATTTCTCTCA+AGG | - | chr1.4:73113706-73113725 | MS.gene60847:CDS | 30.0% |
| ! | GATCATAAGGATTGGTATAA+AGG | + | chr1.4:73113652-73113671 | None:intergenic | 30.0% |
| AACAACACTCAATGTGTTAG+AGG | + | chr1.4:73113792-73113811 | None:intergenic | 35.0% | |
| AAGAACATCAATCCATCAGT+TGG | + | chr1.4:73113524-73113543 | None:intergenic | 35.0% | |
| ACAACACTCAATGTGTTAGA+GGG | + | chr1.4:73113791-73113810 | None:intergenic | 35.0% | |
| CAAATCAACGATTTGAGCAA+TGG | + | chr1.4:73113843-73113862 | None:intergenic | 35.0% | |
| CCTAAAACAAGTTCATGAGT+TGG | + | chr1.4:73113191-73113210 | None:intergenic | 35.0% | |
| CTTATGATCCCAAATCTATG+AGG | - | chr1.4:73113663-73113682 | MS.gene60847:CDS | 35.0% | |
| GATGCTCAAACGTTAAACAA+TGG | - | chr1.4:73113338-73113357 | MS.gene60847:CDS | 35.0% | |
| TGCTCAAACGTTAAACAATG+GGG | - | chr1.4:73113340-73113359 | MS.gene60847:CDS | 35.0% | |
| TTCTCTCAAGGTCATGAAAT+GGG | - | chr1.4:73113718-73113737 | MS.gene60847:CDS | 35.0% | |
| TTTCTCTCAAGGTCATGAAA+TGG | - | chr1.4:73113717-73113736 | MS.gene60847:CDS | 35.0% | |
| ! | AGATTTGGGATCATAAGGAT+TGG | + | chr1.4:73113660-73113679 | None:intergenic | 35.0% |
| ! | CTCATAGATTTGGGATCATA+AGG | + | chr1.4:73113665-73113684 | None:intergenic | 35.0% |
| ! | GTTGTTGTCACTTATGACAA+TGG | - | chr1.4:73113806-73113825 | MS.gene60847:CDS | 35.0% |
| ! | TATAGCTTGTAACTTGTCTG+AGG | + | chr1.4:73113991-73114010 | None:intergenic | 35.0% |
| !! | CCAACTCATGAACTTGTTTT+AGG | - | chr1.4:73113188-73113207 | MS.gene60847:CDS | 35.0% |
| AAAACGTGCACTTTCTGAGT+TGG | + | chr1.4:73113576-73113595 | None:intergenic | 40.0% | |
| AAACGTGCACTTTCTGAGTT+GGG | + | chr1.4:73113575-73113594 | None:intergenic | 40.0% | |
| AATGCTCTGACATTTCCTTC+TGG | - | chr1.4:73113299-73113318 | MS.gene60847:CDS | 40.0% | |
| ATACCAAACCTAACCGTGTT+GGG | + | chr1.4:73113878-73113897 | None:intergenic | 40.0% | |
| ATATCTGGTGCTTCAGTAAC+TGG | - | chr1.4:73113896-73113915 | MS.gene60847:CDS | 40.0% | |
| CAAGGTCATGAAATGGGAAT+GGG | - | chr1.4:73113724-73113743 | MS.gene60847:CDS | 40.0% | |
| CTTCTGGTATAACCTTCCAA+GGG | - | chr1.4:73113315-73113334 | MS.gene60847:CDS | 40.0% | |
| CTTGGTTTAAGTGTACCTGA+AGG | + | chr1.4:73113395-73113414 | None:intergenic | 40.0% | |
| GGTACACTTAAACCAAGTAC+AGG | - | chr1.4:73113398-73113417 | MS.gene60847:CDS | 40.0% | |
| GGTCTCTACTACGAATGAAA+AGG | + | chr1.4:73113489-73113508 | None:intergenic | 40.0% | |
| GTTAAGATACGACCTGTACT+TGG | + | chr1.4:73113413-73113432 | None:intergenic | 40.0% | |
| TATACCAAACCTAACCGTGT+TGG | + | chr1.4:73113879-73113898 | None:intergenic | 40.0% | |
| TCAAGGTCATGAAATGGGAA+TGG | - | chr1.4:73113723-73113742 | MS.gene60847:CDS | 40.0% | |
| TTCTGGTATAACCTTCCAAG+GGG | - | chr1.4:73113316-73113335 | MS.gene60847:CDS | 40.0% | |
| ! | ACGGTTAGGTTTGGTATATC+TGG | - | chr1.4:73113881-73113900 | MS.gene60847:CDS | 40.0% |
| ! | GAAGGAAATGTCAGAGCATT+AGG | + | chr1.4:73113299-73113318 | None:intergenic | 40.0% |
| !! | AACTCAGAAAGTGCACGTTT+TGG | - | chr1.4:73113575-73113594 | MS.gene60847:CDS | 40.0% |
| !! | AAGTGCTGAATGACCATGAA+TGG | + | chr1.4:73113937-73113956 | None:intergenic | 40.0% |
| !! | AGTTGACGTTGGTTCCAATA+TGG | + | chr1.4:73113691-73113710 | None:intergenic | 40.0% |
| AAGCGTGAGAAAACTCCTTC+AGG | - | chr1.4:73113377-73113396 | MS.gene60847:CDS | 45.0% | |
| ATGAAATGGGAATGGGTGAG+TGG | - | chr1.4:73113731-73113750 | MS.gene60847:CDS | 45.0% | |
| CAGCACATGACATCCATTCA+TGG | - | chr1.4:73113921-73113940 | MS.gene60847:CDS | 45.0% | |
| CCTTCTGGTATAACCTTCCA+AGG | - | chr1.4:73113314-73113333 | MS.gene60847:CDS | 45.0% | |
| CCTTGGAAGGTTATACCAGA+AGG | + | chr1.4:73113317-73113336 | None:intergenic | 45.0% | |
| GAAAACTGTACTCCCCAACA+CGG | - | chr1.4:73113862-73113881 | MS.gene60847:CDS | 45.0% | |
| GACAAAGCTAGCATCATTGC+CGG | + | chr1.4:73113462-73113481 | None:intergenic | 45.0% | |
| TACCAAACCTAACCGTGTTG+GGG | + | chr1.4:73113877-73113896 | None:intergenic | 45.0% | |
| TCATTCGTAGTAGAGACCAC+CGG | - | chr1.4:73113491-73113510 | MS.gene60847:CDS | 45.0% | |
| TGTGTTAGAGGGAGAGTCAT+AGG | + | chr1.4:73113780-73113799 | None:intergenic | 45.0% | |
| TTAACGTTTGAGCATCCCCT+TGG | + | chr1.4:73113334-73113353 | None:intergenic | 45.0% | |
| ! | CAGAGCATTAGGAGTGAACT+TGG | + | chr1.4:73113288-73113307 | None:intergenic | 45.0% |
| GGTGGAATCACAGTGTCTTG+TGG | + | chr1.4:73113554-73113573 | None:intergenic | 50.0% | |
| ! | TCCATCAGTTGGAGCGTTTC+CGG | + | chr1.4:73113513-73113532 | None:intergenic | 50.0% |
| ACCGGAAACGCTCCAACTGA+TGG | - | chr1.4:73113509-73113528 | MS.gene60847:CDS | 55.0% | |
| ATTGCCGGCAGTGTCCCAAA+GGG | + | chr1.4:73113447-73113466 | None:intergenic | 55.0% | |
| CGTTTGAGCATCCCCTTGGA+AGG | + | chr1.4:73113330-73113349 | None:intergenic | 55.0% | |
| CTCCCCAACACGGTTAGGTT+TGG | - | chr1.4:73113872-73113891 | MS.gene60847:CDS | 55.0% | |
| CTGTACTCCCCAACACGGTT+AGG | - | chr1.4:73113867-73113886 | MS.gene60847:CDS | 55.0% | |
| ! | ATCAGTTGGAGCGTTTCCGG+TGG | + | chr1.4:73113510-73113529 | None:intergenic | 55.0% |
| ! | CGTGCACTTTCTGAGTTGGG+TGG | + | chr1.4:73113572-73113591 | None:intergenic | 55.0% |
| AACCCCACCCGTGTCCCTTT+GGG | - | chr1.4:73113430-73113449 | MS.gene60847:CDS | 60.0% | |
| CATTGCCGGCAGTGTCCCAA+AGG | + | chr1.4:73113448-73113467 | None:intergenic | 60.0% | |
| GCAGTGTCCCAAAGGGACAC+GGG | + | chr1.4:73113440-73113459 | None:intergenic | 60.0% | |
| GGCAGTGTCCCAAAGGGACA+CGG | + | chr1.4:73113441-73113460 | None:intergenic | 60.0% | |
| TAACCCCACCCGTGTCCCTT+TGG | - | chr1.4:73113429-73113448 | MS.gene60847:CDS | 60.0% | |
| TGTCCCAAAGGGACACGGGT+GGG | + | chr1.4:73113436-73113455 | None:intergenic | 60.0% | |
| !! | GTGTCCCTTTGGGACACTGC+CGG | - | chr1.4:73113440-73113459 | MS.gene60847:CDS | 60.0% |
| GTCCCAAAGGGACACGGGTG+GGG | + | chr1.4:73113435-73113454 | None:intergenic | 65.0% | |
| GTGTCCCAAAGGGACACGGG+TGG | + | chr1.4:73113437-73113456 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 73113164 | 73114015 | 73113164 | ID=MS.gene60847 |
| chr1.4 | mRNA | 73113164 | 73114015 | 73113164 | ID=MS.gene60847.t1;Parent=MS.gene60847 |
| chr1.4 | exon | 73113164 | 73114015 | 73113164 | ID=MS.gene60847.t1.exon1;Parent=MS.gene60847.t1 |
| chr1.4 | CDS | 73113164 | 73114015 | 73113164 | ID=cds.MS.gene60847.t1;Parent=MS.gene60847.t1 |
| Gene Sequence |
| Protein sequence |
