AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene60931


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60931.t1 MTR_2g063080 97.468 553 13 1 1 553 1 552 0.0 1089
MS.gene60931.t1 MTR_2g100230 29.372 446 256 9 86 526 69 460 8.38e-49 176
MS.gene60931.t1 MTR_7g056830 30.073 409 227 7 108 515 9 359 5.25e-47 170
MS.gene60931.t1 MTR_6g082080 30.732 410 223 8 108 515 9 359 2.69e-46 168
MS.gene60931.t1 MTR_6g005550 29.358 436 250 9 95 526 147 528 2.87e-44 167
MS.gene60931.t1 MTR_3g449250 29.138 429 241 11 110 536 91 458 6.35e-44 164
MS.gene60931.t1 MTR_3g449250 29.138 429 241 11 110 536 91 458 7.14e-44 164
MS.gene60931.t1 MTR_2g438110 25.917 436 257 8 106 535 31 406 1.01e-43 160
MS.gene60931.t1 MTR_2g043360 26.608 451 289 10 105 524 37 476 7.22e-43 162
MS.gene60931.t1 MTR_7g109720 27.869 488 271 13 49 515 159 586 7.73e-43 164
MS.gene60931.t1 MTR_4g059460 25.991 454 294 10 102 524 37 479 1.45e-42 161
MS.gene60931.t1 MTR_5g090120 28.205 429 245 11 110 536 82 449 2.79e-42 160
MS.gene60931.t1 MTR_4g134170 27.623 467 277 10 67 525 255 668 4.52e-42 161
MS.gene60931.t1 MTR_1g095810 27.765 425 238 11 101 514 137 503 1.36e-41 158
MS.gene60931.t1 MTR_1g026830 27.316 421 245 9 101 514 139 505 1.93e-41 157
MS.gene60931.t1 MTR_4g079320 27.103 428 247 9 110 532 20 387 2.06e-41 159
MS.gene60931.t1 MTR_2g039960 26.118 425 247 8 109 529 41 402 6.47e-41 153
MS.gene60931.t1 MTR_8g018400 25.943 424 249 8 109 529 41 402 4.65e-40 150
MS.gene60931.t1 MTR_6g005320 27.571 457 268 11 77 525 227 628 7.46e-40 154
MS.gene60931.t1 MTR_4g125970 25.776 419 244 8 109 523 41 396 1.23e-39 149
MS.gene60931.t1 MTR_2g099620 25.952 420 244 9 108 523 24 380 1.66e-39 149
MS.gene60931.t1 MTR_2g099620 25.776 419 246 8 108 523 40 396 1.87e-39 149
MS.gene60931.t1 MTR_4g105100 27.578 446 264 10 86 526 175 566 2.17e-39 152
MS.gene60931.t1 MTR_4g125970 25.776 419 244 8 109 523 58 413 2.29e-39 149
MS.gene60931.t1 MTR_3g467550 26.484 438 247 11 103 525 111 488 7.95e-39 150
MS.gene60931.t1 MTR_2g007000 28.603 451 237 14 97 527 486 871 2.19e-38 151
MS.gene60931.t1 MTR_1g012420 25.647 425 257 6 107 529 45 412 3.14e-38 145
MS.gene60931.t1 MTR_2g032630 28.638 426 250 8 101 526 488 859 4.77e-38 150
MS.gene60931.t1 MTR_3g107420 25.882 425 256 6 107 529 45 412 6.23e-38 145
MS.gene60931.t1 MTR_2g041140 29.508 427 235 11 105 524 137 504 1.44e-37 148
MS.gene60931.t1 MTR_6g039840 29.147 422 252 10 109 526 110 488 2.05e-37 147
MS.gene60931.t1 MTR_1g054630 27.152 453 281 9 82 526 121 532 2.82e-37 146
MS.gene60931.t1 MTR_3g083690 27.803 446 265 9 102 535 138 538 3.60e-37 145
MS.gene60931.t1 MTR_3g467550 26.540 422 235 11 119 525 96 457 1.45e-36 143
MS.gene60931.t1 MTR_5g027840 29.730 407 227 12 108 509 103 455 1.65e-36 142
MS.gene60931.t1 MTR_7g057250 28.733 442 260 15 109 515 163 584 2.67e-36 144
MS.gene60931.t1 MTR_2g066050 26.908 498 280 12 67 551 5 431 3.77e-36 141
MS.gene60931.t1 MTR_7g076820 23.571 420 252 6 110 525 151 505 4.27e-36 141
MS.gene60931.t1 MTR_3g049990 28.873 426 238 12 105 524 148 514 8.43e-36 143
MS.gene60931.t1 MTR_7g076830 23.571 420 252 7 110 525 144 498 1.56e-35 140
MS.gene60931.t1 MTR_7g076800 23.571 420 252 7 110 525 142 496 1.88e-35 139
MS.gene60931.t1 MTR_4g010565 25.837 418 246 8 116 529 132 489 3.98e-35 138
MS.gene60931.t1 MTR_8g027775 26.526 426 258 9 110 529 103 479 4.23e-35 139
MS.gene60931.t1 MTR_4g131750 24.841 471 271 10 83 525 56 471 7.98e-35 137
MS.gene60931.t1 MTR_8g027770 27.635 427 252 12 110 529 202 578 1.27e-33 135
MS.gene60931.t1 MTR_8g097000 27.765 425 253 14 100 517 280 657 2.13e-33 135
MS.gene60931.t1 MTR_4g114120 29.340 409 243 11 101 504 132 499 1.52e-32 132
MS.gene60931.t1 MTR_2g055850 25.799 438 270 9 105 540 87 471 1.23e-31 129
MS.gene60931.t1 MTR_8g027780 27.189 434 262 11 102 529 98 483 1.73e-31 129
MS.gene60931.t1 MTR_1g102410 28.132 423 250 13 100 511 35 414 5.75e-31 127
MS.gene60931.t1 MTR_5g092560 28.960 404 228 11 132 531 99 447 1.15e-30 127
MS.gene60931.t1 MTR_7g100820 25.935 428 246 9 102 521 123 487 1.31e-30 126
MS.gene60931.t1 MTR_3g467550 25.945 397 219 11 103 484 111 447 1.10e-29 122
MS.gene60931.t1 MTR_6g056080 29.688 384 210 15 134 511 128 457 2.82e-29 123
MS.gene60931.t1 MTR_4g112340 25.659 417 252 10 127 539 115 477 3.09e-28 119
MS.gene60931.t1 MTR_3g071620 26.087 437 263 13 99 519 4 396 7.21e-28 118
MS.gene60931.t1 MTR_1g083130 25.503 447 245 9 108 515 25 422 1.98e-27 117
MS.gene60931.t1 MTR_1g061970 26.593 455 242 19 102 525 72 465 2.57e-27 115
MS.gene60931.t1 MTR_4g068990 28.141 398 221 11 132 522 99 438 9.48e-27 115
MS.gene60931.t1 MTR_4g105100 25.831 391 231 10 85 470 174 510 2.20e-26 113
MS.gene60931.t1 MTR_6g033070 25.290 431 247 13 98 516 131 498 9.00e-26 111
MS.gene60931.t1 MTR_2g043360 24.438 356 235 8 199 524 7 358 1.70e-24 107
MS.gene60931.t1 MTR_4g459350 28.947 228 144 7 102 322 34 250 4.56e-24 102
MS.gene60931.t1 MTR_4g049910 26.522 460 222 18 103 527 48 426 7.05e-24 105
MS.gene60931.t1 MTR_6g039840 27.976 336 202 9 195 526 13 312 3.64e-23 103
MS.gene60931.t1 MTR_8g018370 23.454 388 213 10 138 523 2 307 2.47e-22 98.6
MS.gene60931.t1 MTR_8g027780 25.441 397 245 10 102 492 98 449 5.32e-22 99.4
MS.gene60931.t1 MTR_3g118120 24.356 427 277 10 105 521 128 518 9.62e-21 96.3
MS.gene60931.t1 MTR_3g107420 30.769 208 113 4 116 322 55 232 1.09e-20 93.6
MS.gene60931.t1 MTR_0915s0010 22.874 341 194 7 125 461 5 280 1.14e-20 92.8
MS.gene60931.t1 MTR_4g077370 32.653 196 97 5 109 294 250 420 4.88e-19 90.1
MS.gene60931.t1 MTR_4g077370 29.798 198 85 6 109 294 2 157 2.33e-14 75.9
MS.gene60931.t1 MTR_8g032230 36.196 163 80 4 95 257 3 141 2.43e-18 83.2
MS.gene60931.t1 MTR_5g077690 25.616 406 246 12 147 521 71 451 5.23e-18 87.4
MS.gene60931.t1 MTR_1g046570 21.308 413 230 10 126 502 8 361 1.09e-17 85.9
MS.gene60931.t1 MTR_8g062720 30.052 193 117 6 109 293 91 273 8.84e-15 77.8
MS.gene60931.t1 MTR_4g112320 24.367 316 194 9 227 539 22 295 1.80e-13 72.8
MS.gene60931.t1 MTR_4g068990 26.953 256 143 6 270 522 13 227 5.01e-12 68.9
MS.gene60931.t1 MTR_0427s0010 35.417 96 47 2 445 525 104 199 7.11e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60931.t1 AT1G12770 60.323 557 208 8 1 550 1 551 0.0 654
MS.gene60931.t1 AT1G12770 60.323 557 208 8 1 550 1 551 0.0 654
MS.gene60931.t1 AT5G60990 28.851 409 242 7 108 515 9 369 1.03e-45 167
MS.gene60931.t1 AT3G19760 25.635 433 256 9 109 535 36 408 1.89e-45 165
MS.gene60931.t1 AT1G55150 28.271 428 254 8 99 526 90 464 8.06e-45 166
MS.gene60931.t1 AT1G55150 28.271 428 254 8 99 526 115 489 1.59e-44 165
MS.gene60931.t1 AT2G47330 27.327 505 292 12 29 515 136 583 3.48e-43 164
MS.gene60931.t1 AT4G09730 28.795 448 259 11 85 525 96 490 5.96e-43 162
MS.gene60931.t1 AT5G14610 28.230 418 246 6 109 526 170 533 7.29e-43 162
MS.gene60931.t1 AT5G14610 28.230 418 246 6 109 526 162 525 7.36e-43 162
MS.gene60931.t1 AT5G14610 28.230 418 246 6 109 526 162 525 8.35e-43 162
MS.gene60931.t1 AT1G31970 30.206 437 233 14 85 509 93 469 6.86e-42 158
MS.gene60931.t1 AT5G63120 29.439 428 249 10 99 526 156 530 8.75e-42 159
MS.gene60931.t1 AT5G51280 27.685 419 246 10 101 514 139 505 1.36e-41 158
MS.gene60931.t1 AT3G01540 28.708 418 244 8 109 526 159 522 3.24e-41 157
MS.gene60931.t1 AT3G01540 28.708 418 244 8 109 526 159 522 3.24e-41 157
MS.gene60931.t1 AT3G01540 28.708 418 244 8 109 526 159 522 3.24e-41 157
MS.gene60931.t1 AT3G13920 26.279 430 242 9 108 531 39 399 3.49e-41 154
MS.gene60931.t1 AT3G13920 26.279 430 242 9 108 531 43 403 3.52e-41 154
MS.gene60931.t1 AT3G01540 28.708 418 244 8 109 526 159 522 3.82e-41 157
MS.gene60931.t1 AT5G14610 28.019 414 241 7 113 526 38 394 7.92e-41 155
MS.gene60931.t1 AT5G14610 28.019 414 241 7 113 526 38 394 7.92e-41 155
MS.gene60931.t1 AT5G26742 27.824 478 271 12 59 534 68 473 1.14e-40 157
MS.gene60931.t1 AT5G26742 27.824 478 271 12 59 534 68 473 1.15e-40 157
MS.gene60931.t1 AT3G13920 26.128 421 241 9 108 521 29 386 1.71e-40 151
MS.gene60931.t1 AT3G13920 26.128 421 241 9 108 521 39 396 1.76e-40 152
MS.gene60931.t1 AT4G33370 27.294 425 240 11 101 514 90 456 2.63e-40 154
MS.gene60931.t1 AT1G54270 26.316 418 244 8 108 521 39 396 5.56e-40 150
MS.gene60931.t1 AT3G22330 27.292 480 279 13 50 525 54 467 7.15e-40 154
MS.gene60931.t1 AT3G06480 28.169 426 252 6 101 526 428 799 9.57e-40 155
MS.gene60931.t1 AT5G14610 28.250 400 233 6 127 526 248 593 1.10e-39 154
MS.gene60931.t1 AT2G33730 28.256 453 256 12 77 516 292 688 1.19e-39 154
MS.gene60931.t1 AT3G13920 26.128 421 236 10 108 521 39 391 2.90e-39 148
MS.gene60931.t1 AT2G40700 25.265 471 292 11 95 524 17 468 4.51e-39 151
MS.gene60931.t1 AT1G77030 27.294 425 244 9 110 529 30 394 6.73e-39 152
MS.gene60931.t1 AT2G45810 25.238 420 245 8 110 525 156 510 1.35e-38 149
MS.gene60931.t1 AT1G54270 26.316 418 239 9 108 521 39 391 1.51e-38 146
MS.gene60931.t1 AT1G72730 25.728 412 239 8 102 509 35 383 2.18e-38 146
MS.gene60931.t1 AT1G51380 25.485 412 240 9 108 515 22 370 3.93e-38 145
MS.gene60931.t1 AT3G61240 24.048 420 250 6 110 525 126 480 5.47e-38 146
MS.gene60931.t1 AT3G61240 24.048 420 250 6 110 525 126 480 5.47e-38 146
MS.gene60931.t1 AT1G20920 27.505 469 257 14 81 527 152 559 1.51e-37 148
MS.gene60931.t1 AT5G26742 28.713 404 228 10 133 534 35 380 5.50e-37 145
MS.gene60931.t1 AT3G22310 26.603 421 247 10 109 525 117 479 7.25e-37 145
MS.gene60931.t1 AT3G22310 26.603 421 247 10 109 525 117 479 8.27e-37 145
MS.gene60931.t1 AT5G11170 24.941 425 260 6 107 529 45 412 9.61e-37 142
MS.gene60931.t1 AT5G11200 24.941 425 260 6 107 529 45 412 9.61e-37 142
MS.gene60931.t1 AT1G16280 27.166 427 243 10 106 525 56 421 1.03e-36 143
MS.gene60931.t1 AT2G42520 27.465 426 270 7 101 526 152 538 1.44e-36 144
MS.gene60931.t1 AT2G42520 27.465 426 270 7 101 526 152 538 1.44e-36 144
MS.gene60931.t1 AT2G42520 27.465 426 270 7 101 526 152 538 1.44e-36 144
MS.gene60931.t1 AT1G28180 29.668 391 202 11 137 516 2 330 2.12e-36 139
MS.gene60931.t1 AT1G20920 27.556 450 243 13 97 527 512 897 2.93e-36 145
MS.gene60931.t1 AT1G20920 27.556 450 243 13 97 527 512 897 2.93e-36 145
MS.gene60931.t1 AT1G20920 27.556 450 243 13 97 527 512 897 2.93e-36 145
MS.gene60931.t1 AT1G20920 27.556 450 243 13 97 527 512 897 2.93e-36 145
MS.gene60931.t1 AT1G20920 27.556 450 243 13 97 527 512 897 2.93e-36 145
MS.gene60931.t1 AT1G20920 27.556 450 243 13 97 527 512 897 2.93e-36 145
MS.gene60931.t1 AT4G00660 23.571 420 252 7 110 525 133 487 3.18e-36 142
MS.gene60931.t1 AT4G00660 23.571 420 252 7 110 525 133 487 3.18e-36 142
MS.gene60931.t1 AT3G58570 27.146 431 265 9 101 526 139 525 1.37e-35 141
MS.gene60931.t1 AT5G11200 25.282 443 277 9 107 529 45 453 1.81e-35 139
MS.gene60931.t1 AT3G58510 27.230 426 267 8 102 526 145 528 2.14e-35 140
MS.gene60931.t1 AT3G58510 27.230 426 267 8 102 526 145 528 2.14e-35 140
MS.gene60931.t1 AT3G58510 27.230 426 267 8 102 526 145 528 2.14e-35 140
MS.gene60931.t1 AT1G63250 27.088 443 274 12 86 522 304 703 3.39e-35 141
MS.gene60931.t1 AT4G16630 28.375 437 238 13 100 525 159 531 4.67e-35 140
MS.gene60931.t1 AT5G63630 27.033 455 273 11 84 530 30 433 4.73e-35 139
MS.gene60931.t1 AT5G63630 27.033 455 273 11 84 530 224 627 2.01e-34 138
MS.gene60931.t1 AT2G07750 26.637 443 276 12 86 522 351 750 4.01e-34 138
MS.gene60931.t1 AT5G19210 25.835 449 253 10 102 525 70 463 6.07e-34 134
MS.gene60931.t1 AT5G11200 25.727 447 269 9 116 529 55 471 4.49e-33 132
MS.gene60931.t1 AT3G09720 26.636 428 243 10 102 521 131 495 8.07e-33 132
MS.gene60931.t1 AT3G09720 26.636 428 243 10 102 521 131 495 8.07e-33 132
MS.gene60931.t1 AT5G11170 25.455 385 228 6 147 529 2 329 2.06e-32 127
MS.gene60931.t1 AT5G14610 27.322 366 212 7 109 474 170 481 2.57e-32 130
MS.gene60931.t1 AT5G08610 27.536 414 249 10 110 517 384 752 1.67e-31 130
MS.gene60931.t1 AT3G18600 25.115 434 268 9 109 540 90 468 2.03e-31 128
MS.gene60931.t1 AT5G62190 28.704 432 240 14 96 519 88 459 6.88e-31 127
MS.gene60931.t1 AT5G63120 28.042 378 219 10 99 476 156 480 1.17e-30 125
MS.gene60931.t1 AT5G63120 28.042 378 219 10 99 476 156 480 1.17e-30 125
MS.gene60931.t1 AT5G63120 28.042 378 219 10 99 476 156 480 1.17e-30 125
MS.gene60931.t1 AT5G08620 28.095 420 239 13 110 517 82 450 2.65e-30 125
MS.gene60931.t1 AT1G71370 28.125 416 232 12 106 509 12 372 5.85e-30 124
MS.gene60931.t1 AT3G16840 26.218 431 284 10 109 515 191 611 1.48e-29 124
MS.gene60931.t1 AT3G16840 26.218 431 284 10 109 515 192 612 1.54e-29 124
MS.gene60931.t1 AT4G34910 26.207 435 231 9 106 499 44 429 1.82e-29 123
MS.gene60931.t1 AT5G65900 25.287 435 267 9 108 539 154 533 2.60e-29 122
MS.gene60931.t1 AT5G63120 27.957 372 215 10 99 470 156 474 3.30e-29 121
MS.gene60931.t1 AT5G05450 27.546 432 248 15 102 517 8 390 4.20e-29 122
MS.gene60931.t1 AT3G06480 26.649 379 224 6 101 479 428 752 4.85e-29 122
MS.gene60931.t1 AT3G02065 25.971 412 253 8 104 514 106 466 1.53e-28 119
MS.gene60931.t1 AT3G02065 25.971 412 253 8 104 514 106 466 1.53e-28 119
MS.gene60931.t1 AT3G53110 25.966 466 257 17 102 545 84 483 1.57e-27 116
MS.gene60931.t1 AT5G54910 27.506 429 245 13 108 529 71 440 4.25e-27 116
MS.gene60931.t1 AT3G02065 25.661 378 229 8 138 514 3 329 2.53e-22 99.4
MS.gene60931.t1 AT3G06980 24.408 422 267 11 93 502 359 740 3.24e-22 101
MS.gene60931.t1 AT4G15850 26.355 406 249 12 147 526 74 455 1.26e-20 95.9
MS.gene60931.t1 AT1G51380 24.528 318 173 9 108 421 22 276 5.94e-20 90.5
MS.gene60931.t1 AT3G09620 28.772 285 149 11 97 359 380 632 7.10e-20 94.4
MS.gene60931.t1 AT3G09620 41.250 80 47 0 448 527 657 736 2.99e-11 67.0
MS.gene60931.t1 AT3G09620 28.772 285 149 11 97 359 379 631 7.29e-20 94.4
MS.gene60931.t1 AT3G09620 41.250 80 47 0 448 527 656 735 3.04e-11 67.0
MS.gene60931.t1 AT1G71280 32.701 211 108 8 100 301 10 195 4.65e-19 89.0
MS.gene60931.t1 AT1G71280 32.701 211 108 8 100 301 10 195 1.93e-18 88.6
MS.gene60931.t1 AT1G51380 25.941 239 140 6 108 343 22 226 2.42e-18 86.3
MS.gene60931.t1 AT1G51380 25.941 239 140 6 108 343 22 226 3.07e-18 86.3
MS.gene60931.t1 AT1G59990 28.897 263 154 12 50 293 14 262 1.12e-11 67.8
MS.gene60931.t1 AT1G59990 28.897 263 154 12 50 293 14 262 1.24e-11 67.8

Find 0 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTAGCATTTGAGTTA+TGG - 15101:1429-1448 MS.gene60931:intergenic 20.0%
! ATCTCTTCACTTATAATCTT+TGG - 15101:689-708 MS.gene60931:intergenic 25.0%
! GATTATAAGTGAAGAGATTA+AGG + 15101:691-710 MS.gene60931:CDS 25.0%
! TTCCTATATTGTCTGTTATT+GGG + 15101:1008-1027 MS.gene60931:CDS 25.0%
AAGGTTAAAAGAAAACCCTT+TGG + 15101:749-768 MS.gene60931:CDS 30.0%
ACAAATGAATTATCAGCAAG+AGG + 15101:1901-1920 MS.gene60931:CDS 30.0%
ACCATTCTTAAACTTCTTCA+GGG - 15101:1863-1882 MS.gene60931:intergenic 30.0%
AGAATCATTTCCTATGAGAA+GGG + 15101:559-578 MS.gene60931:CDS 30.0%
CATGAAAACTATCACGAATT+TGG - 15101:1737-1756 MS.gene60931:intergenic 30.0%
CTTCCTATATTGTCTGTTAT+TGG + 15101:1007-1026 MS.gene60931:CDS 30.0%
GAATCATACTAAGCAGTTAA+AGG + 15101:1756-1775 MS.gene60931:CDS 30.0%
TCAGAAGAAGATAAACCTAA+CGG - 15101:722-741 MS.gene60931:intergenic 30.0%
TGTGATAATTCAGTCGTATA+CGG + 15101:958-977 MS.gene60931:CDS 30.0%
TTAGGTTTATCTTCTTCTGA+GGG + 15101:722-741 MS.gene60931:CDS 30.0%
! TGTTGAATTCTAGATTTGCT+TGG + 15101:585-604 MS.gene60931:CDS 30.0%
!! AGCAGGTTTGTTTTTCTTAA+GGG - 15101:1236-1255 MS.gene60931:intergenic 30.0%
!! TAGCAGGTTTGTTTTTCTTA+AGG - 15101:1237-1256 MS.gene60931:intergenic 30.0%
!! TAGTGAGAAGAAAAGTGTTA+GGG + 15101:775-794 MS.gene60931:CDS 30.0%
!! TTAGTGAGAAGAAAAGTGTT+AGG + 15101:774-793 MS.gene60931:CDS 30.0%
AAAACGACTTAGCAGCAAAA+GGG - 15101:829-848 None:intergenic 35.0%
AAAGGATGTTGTCTTCAAGT+TGG + 15101:1774-1793 MS.gene60931:CDS 35.0%
AACAAACCTGCTATTGTTGT+TGG + 15101:1244-1263 MS.gene60931:CDS 35.0%
AACACTATTACTGTGTAGTG+AGG + 15101:1662-1681 MS.gene60931:CDS 35.0%
AACCATAATTAACTGACGCT+CGG - 15101:1452-1471 MS.gene60931:intergenic 35.0%
ACAAAATTACAGCACGCAAT+CGG - 15101:2102-2121 MS.gene60931:intergenic 35.0%
ACCCTGAAGAAGTTTAAGAA+TGG + 15101:1859-1878 MS.gene60931:CDS 35.0%
ACGACTGAATTATCACATCA+TGG - 15101:955-974 MS.gene60931:intergenic 35.0%
AGATATTGGGAATGGAAAAC+AGG + 15101:1158-1177 MS.gene60931:CDS 35.0%
AGGGAGTTTGAGAAGATATT+GGG + 15101:1145-1164 MS.gene60931:CDS 35.0%
ATTGAGAGGTTAGGAAAAGA+GGG + 15101:875-894 MS.gene60931:CDS 35.0%
CACATCATGGTTCTTCAAAA+TGG - 15101:942-961 MS.gene60931:intergenic 35.0%
CACCATTCTTAAACTTCTTC+AGG - 15101:1864-1883 MS.gene60931:intergenic 35.0%
CAGTAATAGTGTTTCAATGC+TGG - 15101:1655-1674 MS.gene60931:intergenic 35.0%
GAAGAAGTTTAAGAATGGTG+AGG + 15101:1864-1883 MS.gene60931:CDS 35.0%
GAGAATCATTTCCTATGAGA+AGG + 15101:558-577 MS.gene60931:CDS 35.0%
GCAAAGTTTCTTGTACTTGT+TGG + 15101:536-555 MS.gene60931:CDS 35.0%
GCATAGTGAATAGAATCTGT+CGG - 15101:1970-1989 MS.gene60931:intergenic 35.0%
GTGATAATTCAGTCGTATAC+GGG + 15101:959-978 MS.gene60931:CDS 35.0%
GTTAGGTTTATCTTCTTCTG+AGG + 15101:721-740 MS.gene60931:CDS 35.0%
GTTTGAGAAGATATTGGGAA+TGG + 15101:1150-1169 MS.gene60931:CDS 35.0%
TAATAGTGTTTCAATGCTGG+TGG - 15101:1652-1671 MS.gene60931:intergenic 35.0%
TAGGGAGTTTGAGAAGATAT+TGG + 15101:1144-1163 MS.gene60931:CDS 35.0%
TCATGGTTCTTCAAAATGGT+AGG - 15101:938-957 MS.gene60931:intergenic 35.0%
TGAATTATCAGCAAGAGGTT+TGG + 15101:1906-1925 MS.gene60931:CDS 35.0%
TTCAAAACCAACGCTTGAAA+GGG - 15101:654-673 MS.gene60931:intergenic 35.0%
TTCTTCTCACTAACTCCAAA+GGG - 15101:767-786 MS.gene60931:intergenic 35.0%
TTTCAAAACCAACGCTTGAA+AGG - 15101:655-674 MS.gene60931:intergenic 35.0%
TTTCTTCTCACTAACTCCAA+AGG - 15101:768-787 MS.gene60931:intergenic 35.0%
! TGTACCATTTTCGGTTGTAA+GGG + 15101:1480-1499 MS.gene60931:CDS 35.0%
! TTCTGCAACTGTACCATTTT+CGG + 15101:1471-1490 MS.gene60931:CDS 35.0%
! TTCTTAGCTTGAACAAGAAG+TGG - 15101:1529-1548 MS.gene60931:intergenic 35.0%
!! GAAGAAAAGTGTTAGGGTTA+AGG + 15101:781-800 MS.gene60931:CDS 35.0%
!! TTTTGCTGCTAAGTCGTTTT+CGG + 15101:829-848 MS.gene60931:CDS 35.0%
AAACGACTTAGCAGCAAAAG+GGG - 15101:828-847 None:intergenic 40.0%
AAAGTAGTTCAGCAGCTTGT+GGG + 15101:1181-1200 MS.gene60931:CDS 40.0%
AACCGAGCGTCAGTTAATTA+TGG + 15101:1447-1466 MS.gene60931:CDS 40.0%
AACCTCTCAATCAACACTTC+CGG - 15101:866-885 MS.gene60931:intergenic 40.0%
AACCTCTGACTCTTCACATA+TGG - 15101:2043-2062 MS.gene60931:intergenic 40.0%
AGCTCCTTTCGTTCAATTTC+AGG + 15101:1353-1372 MS.gene60931:CDS 40.0%
AGCTTGGAATGCAGATAGTT+AGG + 15101:1125-1144 MS.gene60931:CDS 40.0%
ATGTGATCTTGTGGTAAACC+TGG + 15101:1939-1958 MS.gene60931:CDS 40.0%
ATTTCAGGGAAGATATGCAC+AGG + 15101:1368-1387 MS.gene60931:CDS 40.0%
CTTCCCTGAAATTGAACGAA+AGG - 15101:1360-1379 MS.gene60931:intergenic 40.0%
GAAAACGACTTAGCAGCAAA+AGG - 15101:830-849 MS.gene60931:intergenic 40.0%
GAGATTAAGGTTAAGCCGTT+AGG + 15101:704-723 MS.gene60931:CDS 40.0%
GATTGAGAGGTTAGGAAAAG+AGG + 15101:874-893 MS.gene60931:CDS 40.0%
GCTCCTTTCGTTCAATTTCA+GGG + 15101:1354-1373 MS.gene60931:CDS 40.0%
GCTTGGAATGCAGATAGTTA+GGG + 15101:1126-1145 MS.gene60931:CDS 40.0%
GGAAGATATGCACAGGTTAT+TGG + 15101:1375-1394 MS.gene60931:CDS 40.0%
GGCCCAATAACAGACAATAT+AGG - 15101:1013-1032 MS.gene60931:intergenic 40.0%
TACTCACGGCTGTCAATATT+TGG + 15101:1312-1331 MS.gene60931:CDS 40.0%
TGAAAGCTGCAGAGTTACAT+GGG + 15101:1809-1828 MS.gene60931:CDS 40.0%
TTCAACAAAGCCCTTCTCAT+AGG - 15101:572-591 MS.gene60931:intergenic 40.0%
! ATCTTCTTCTGAGGGTTTCA+AGG + 15101:730-749 MS.gene60931:CDS 40.0%
! CTGTACCATTTTCGGTTGTA+AGG + 15101:1479-1498 MS.gene60931:CDS 40.0%
! GAGAAAGTGTATTCATGCAC+TGG + 15101:1708-1727 MS.gene60931:CDS 40.0%
! GCGTGCTGTAATTTTGTTGA+GGG + 15101:2105-2124 MS.gene60931:CDS 40.0%
! GTTTTCGGAACTTGGTATTC+CGG + 15101:844-863 MS.gene60931:CDS 40.0%
! TGCGTGCTGTAATTTTGTTG+AGG + 15101:2104-2123 MS.gene60931:CDS 40.0%
!! GAAGTGTTGATTGAGAGGTT+AGG + 15101:866-885 MS.gene60931:CDS 40.0%
ACAGGTTATTGGAGCATGTC+GGG + 15101:1386-1405 MS.gene60931:CDS 45.0%
AGTGATTGTTGCTCCTTCGA+GGG + 15101:1102-1121 MS.gene60931:CDS 45.0%
AGTGGGAAACTTCGTACTCA+CGG + 15101:1298-1317 MS.gene60931:CDS 45.0%
ATAGCTGAGCTTAGTGCAAG+TGG + 15101:1280-1299 MS.gene60931:CDS 45.0%
ATCAGCAAGAGGTTTGGATG+TGG + 15101:1912-1931 MS.gene60931:CDS 45.0%
ATTCAGTCGTATACGGGTTC+AGG + 15101:965-984 MS.gene60931:CDS 45.0%
CACAGGTTATTGGAGCATGT+CGG + 15101:1385-1404 MS.gene60931:CDS 45.0%
CAGAGTTACATGGGGATCTT+GGG + 15101:1818-1837 MS.gene60931:CDS 45.0%
GAAAGCTGCAGAGTTACATG+GGG + 15101:1810-1829 MS.gene60931:CDS 45.0%
GAAAGTAGTTCAGCAGCTTG+TGG + 15101:1180-1199 MS.gene60931:CDS 45.0%
GACCATATGTGAAGAGTCAG+AGG + 15101:2038-2057 MS.gene60931:CDS 45.0%
GTGAAAGCTGCAGAGTTACA+TGG + 15101:1808-1827 MS.gene60931:CDS 45.0%
TAGAATCTGTCGGTAAGTCC+AGG - 15101:1960-1979 MS.gene60931:intergenic 45.0%
TAGCTGAGCTTAGTGCAAGT+GGG + 15101:1281-1300 MS.gene60931:CDS 45.0%
TCTTTGACCCTTTCAAGCGT+TGG + 15101:644-663 MS.gene60931:CDS 45.0%
TGAGAGGTGAAAACCGTGAA+GGG + 15101:1035-1054 MS.gene60931:CDS 45.0%
TGTAAGGGCAGCTAAAAGCT+GGG + 15101:1495-1514 MS.gene60931:CDS 45.0%
TGTGGCAGAATGTGATCTTG+TGG + 15101:1930-1949 MS.gene60931:CDS 45.0%
TTCAGTCGTATACGGGTTCA+GGG + 15101:966-985 MS.gene60931:CDS 45.0%
TTGTAAGGGCAGCTAAAAGC+TGG + 15101:1494-1513 MS.gene60931:CDS 45.0%
!! GCTAAGTCGTTTTCGGAACT+TGG + 15101:836-855 MS.gene60931:CDS 45.0%
!! TTCCGGAAGTGTTGATTGAG+AGG + 15101:861-880 MS.gene60931:CDS 45.0%
ACAGCCTTAGATGGCACAGA+CGG - 15101:1616-1635 MS.gene60931:intergenic 50.0%
AGAGGTGAAAACCGTGAAGG+GGG + 15101:1037-1056 MS.gene60931:CDS 50.0%
ATTCACTATGCACACCGAGC+TGG + 15101:1979-1998 MS.gene60931:CDS 50.0%
CAGTGATTGTTGCTCCTTCG+AGG + 15101:1101-1120 MS.gene60931:CDS 50.0%
CTAAGCTCAGCTATCCTACC+AGG - 15101:1274-1293 MS.gene60931:intergenic 50.0%
CTCTCTACCACAGCCTTAGA+TGG - 15101:1625-1644 MS.gene60931:intergenic 50.0%
CTGAGAGGTGAAAACCGTGA+AGG + 15101:1034-1053 MS.gene60931:CDS 50.0%
GACTGATGTTCAGTCTGCTG+CGG + 15101:910-929 MS.gene60931:CDS 50.0%
GAGAGGTGAAAACCGTGAAG+GGG + 15101:1036-1055 MS.gene60931:CDS 50.0%
GCAGAGTTACATGGGGATCT+TGG + 15101:1817-1836 MS.gene60931:CDS 50.0%
GCAGCAGACTGAACATCAGT+CGG - 15101:911-930 MS.gene60931:intergenic 50.0%
GCTGCCCTTACAACCGAAAA+TGG - 15101:1487-1506 MS.gene60931:intergenic 50.0%
GGCGTACCAACAACAATAGC+AGG - 15101:1253-1272 MS.gene60931:intergenic 50.0%
GTAAGGGCAGCTAAAAGCTG+GGG + 15101:1496-1515 MS.gene60931:CDS 50.0%
TCGGGGGACAAAGTTTCAAG+TGG - 15101:1559-1578 MS.gene60931:intergenic 50.0%
! CGGTGACAAATTGACTGGCT+CGG - 15101:1578-1597 MS.gene60931:intergenic 50.0%
! GAGCTCGGTGACAAATTGAC+TGG - 15101:1583-1602 MS.gene60931:intergenic 50.0%
! GCTATTGTTGTTGGTACGCC+TGG + 15101:1253-1272 MS.gene60931:CDS 50.0%
! GGTGACAAATTGACTGGCTC+GGG - 15101:1577-1596 MS.gene60931:intergenic 50.0%
! TCACGGTTTTCACCTCTCAG+CGG - 15101:1034-1053 MS.gene60931:intergenic 50.0%
! TTGTTGTTGGTACGCCTGGT+AGG + 15101:1257-1276 MS.gene60931:CDS 50.0%
!! GTGACAAATTGACTGGCTCG+GGG - 15101:1576-1595 MS.gene60931:intergenic 50.0%
!! TCTTCAAGTTGGAAGCCCGT+GGG + 15101:1785-1804 MS.gene60931:CDS 50.0%
!! TGACAAATTGACTGGCTCGG+GGG - 15101:1575-1594 MS.gene60931:intergenic 50.0%
ACCATTCCTACCAAGCCGAC+CGG - 15101:2010-2029 MS.gene60931:intergenic 55.0%
ACTCTGCAGCTTTCACCCCA+CGG - 15101:1804-1823 MS.gene60931:intergenic 55.0%
AGCCTTAGATGGCACAGACG+GGG - 15101:1614-1633 MS.gene60931:intergenic 55.0%
CAGCCTTAGATGGCACAGAC+GGG - 15101:1615-1634 MS.gene60931:intergenic 55.0%
CATGGGGATCTTGGGAAGCT+TGG + 15101:1826-1845 MS.gene60931:CDS 55.0%
CTTAAGGGCTTCTTCCTGCC+TGG - 15101:1221-1240 MS.gene60931:intergenic 55.0%
GGCGAGGCAGGGAAGAAATT+GGG + 15101:1070-1089 MS.gene60931:CDS 55.0%
GGGATCTTGGGAAGCTTGGT+AGG + 15101:1830-1849 MS.gene60931:CDS 55.0%
GGTTATTGGAGCATGTCGGG+AGG + 15101:1389-1408 MS.gene60931:CDS 55.0%
GTAGTTCAGCAGCTTGTGGG+AGG + 15101:1184-1203 MS.gene60931:CDS 55.0%
TACCCCGTCTGTGCCATCTA+AGG + 15101:1609-1628 MS.gene60931:CDS 55.0%
TCTGTTATTGGGCCGCTGAG+AGG + 15101:1019-1038 MS.gene60931:CDS 55.0%
TGCATTCCAAGCTCCCTCGA+AGG - 15101:1118-1137 MS.gene60931:intergenic 55.0%
TGGCGAGGCAGGGAAGAAAT+TGG + 15101:1069-1088 MS.gene60931:CDS 55.0%
! GTCTGTGCCATCTAAGGCTG+TGG + 15101:1615-1634 MS.gene60931:CDS 55.0%
!! CTTCAAGTTGGAAGCCCGTG+GGG + 15101:1786-1805 MS.gene60931:CDS 55.0%
!! GTCTTCAAGTTGGAAGCCCG+TGG + 15101:1784-1803 MS.gene60931:CDS 55.0%
AACCGTGAAGGGGGTGGTGA+TGG + 15101:1046-1065 MS.gene60931:CDS 60.0%
CACCATCACCACCCCCTTCA+CGG - 15101:1051-1070 MS.gene60931:intergenic 60.0%
CTCTGCAGCTTTCACCCCAC+GGG - 15101:1803-1822 MS.gene60931:intergenic 60.0%
GACGGGGTAGAACTCGAGCT+CGG - 15101:1598-1617 MS.gene60931:intergenic 60.0%
GAGCATGTCGGGAGGAGATC+GGG + 15101:1397-1416 MS.gene60931:CDS 60.0%
GGAGCATGTCGGGAGGAGAT+CGG + 15101:1396-1415 MS.gene60931:CDS 60.0%
GGGCTTCTTCCTGCCTGGTT+CGG - 15101:1216-1235 MS.gene60931:intergenic 60.0%
GGTGAAAACCGTGAAGGGGG+TGG + 15101:1040-1059 MS.gene60931:CDS 60.0%
GTTGCTCCTTCGAGGGAGCT+TGG + 15101:1109-1128 MS.gene60931:CDS 60.0%
!! ACCGGTCGGCTTGGTAGGAA+TGG + 15101:2006-2025 MS.gene60931:CDS 60.0%
ACCGAGCTGGTCGAACCGGT+CGG + 15101:1992-2011 MS.gene60931:CDS 65.0%
AGGTGCGAACCGAACCAGGC+AGG + 15101:1204-1223 MS.gene60931:CDS 65.0%
GCACACCGAGCTGGTCGAAC+CGG + 15101:1988-2007 MS.gene60931:CDS 65.0%
! TGGGAGGTGCGAACCGAACC+AGG + 15101:1200-1219 MS.gene60931:CDS 65.0%
!! CGTGAAGGGGGTGGTGATGG+TGG + 15101:1049-1068 MS.gene60931:CDS 65.0%
!! GTCGAACCGGTCGGCTTGGT+AGG + 15101:2001-2020 MS.gene60931:CDS 65.0%
!! GTGGTGATGGTGGCGAGGCA+GGG + 15101:1059-1078 MS.gene60931:CDS 65.0%
GCTGGTCGAACCGGTCGGCT+TGG + 15101:1997-2016 MS.gene60931:CDS 70.0%
!! AGGGGGTGGTGATGGTGGCG+AGG + 15101:1054-1073 MS.gene60931:CDS 70.0%
!! GCCGACCGGTTCGACCAGCT+CGG - 15101:1996-2015 MS.gene60931:intergenic 70.0%
!! GGTGGTGATGGTGGCGAGGC+AGG + 15101:1058-1077 MS.gene60931:CDS 70.0%


Chromosome Type Strat End Strand Name
15101 gene 518 2179 518 ID=MS.gene60931
15101 mRNA 518 2179 518 ID=MS.gene60931.t1;Parent=MS.gene60931
15101 exon 518 2179 518 ID=MS.gene60931.t1.exon1;Parent=MS.gene60931.t1
15101 CDS 518 2179 518 ID=cds.MS.gene60931.t1;Parent=MS.gene60931.t1
Gene Sequence

>MS.gene60931

ATGCAATCTTTGGTTTCAGCAAAGTTTCTTGTACTTGTTGGAGAATCATTTCCTATGAGAAGGGCTTTGTTGAATTCTAGATTTGCTTGGTTTCATAGTAGTGTGAAATGTTTGAACAAACATGATTCTTTGACCCTTTCAAGCGTTGGTTTTGAAAGTGAAATTGAGCCAAAGATTATAAGTGAAGAGATTAAGGTTAAGCCGTTAGGTTTATCTTCTTCTGAGGGTTTCAAGGTTAAAAGAAAACCCTTTGGAGTTAGTGAGAAGAAAAGTGTTAGGGTTAAGGAGAGAAAAGAAATAGAGAATGCCCCTTTTGCTGCTAAGTCGTTTTCGGAACTTGGTATTCCGGAAGTGTTGATTGAGAGGTTAGGAAAAGAGGGTTTTAATGTTCCGACTGATGTTCAGTCTGCTGCGGTGCCTACCATTTTGAAGAACCATGATGTGATAATTCAGTCGTATACGGGTTCAGGGAAGACATTAGCTTATCTGCTTCCTATATTGTCTGTTATTGGGCCGCTGAGAGGTGAAAACCGTGAAGGGGGTGGTGATGGTGGCGAGGCAGGGAAGAAATTGGGAGTAGAAGCAGTGATTGTTGCTCCTTCGAGGGAGCTTGGAATGCAGATAGTTAGGGAGTTTGAGAAGATATTGGGAATGGAAAACAGGAAAGTAGTTCAGCAGCTTGTGGGAGGTGCGAACCGAACCAGGCAGGAAGAAGCCCTTAAGAAAAACAAACCTGCTATTGTTGTTGGTACGCCTGGTAGGATAGCTGAGCTTAGTGCAAGTGGGAAACTTCGTACTCACGGCTGTCAATATTTGGTATTAGATGAAGTTGACGAGCTCCTTTCGTTCAATTTCAGGGAAGATATGCACAGGTTATTGGAGCATGTCGGGAGGAGATCGGGTGCAGACCATAACTCAAATGCTAAAAAAACCGAGCGTCAGTTAATTATGGTTTCTGCAACTGTACCATTTTCGGTTGTAAGGGCAGCTAAAAGCTGGGGTTCTGAACCACTTCTTGTTCAAGCTAAGAAAATTGTACCACTTGAAACTTTGTCCCCCGAGCCAGTCAATTTGTCACCGAGCTCGAGTTCTACCCCGTCTGTGCCATCTAAGGCTGTGGTAGAGAGTCTACCACCAGCATTGAAACACTATTACTGTGTAGTGAGGTTGCAGCACAAAGTTGATACATTGAGAAAGTGTATTCATGCACTGGATGCCAAATTCGTGATAGTTTTCATGAATCATACTAAGCAGTTAAAGGATGTTGTCTTCAAGTTGGAAGCCCGTGGGGTGAAAGCTGCAGAGTTACATGGGGATCTTGGGAAGCTTGGTAGGTCGACAACCCTGAAGAAGTTTAAGAATGGTGAGGTTAGAGTTCTTGTGACAAATGAATTATCAGCAAGAGGTTTGGATGTGGCAGAATGTGATCTTGTGGTAAACCTGGACTTACCGACAGATTCTATTCACTATGCACACCGAGCTGGTCGAACCGGTCGGCTTGGTAGGAATGGTACTGTGCTGACCATATGTGAAGAGTCAGAGGTTTTTGTTGTGAGAAAATTGAAGAAGCAACTTGAAATACCGATTGCGTGCTGTAATTTTGTTGAGGGAAAGCTTACTATTACTGAAGAAGAAGAGAATGCCCTGAGAAGCACTTCTTGA

Protein sequence

>MS.gene60931.t1

MQSLVSAKFLVLVGESFPMRRALLNSRFAWFHSSVKCLNKHDSLTLSSVGFESEIEPKIISEEIKVKPLGLSSSEGFKVKRKPFGVSEKKSVRVKERKEIENAPFAAKSFSELGIPEVLIERLGKEGFNVPTDVQSAAVPTILKNHDVIIQSYTGSGKTLAYLLPILSVIGPLRGENREGGGDGGEAGKKLGVEAVIVAPSRELGMQIVREFEKILGMENRKVVQQLVGGANRTRQEEALKKNKPAIVVGTPGRIAELSASGKLRTHGCQYLVLDEVDELLSFNFREDMHRLLEHVGRRSGADHNSNAKKTERQLIMVSATVPFSVVRAAKSWGSEPLLVQAKKIVPLETLSPEPVNLSPSSSSTPSVPSKAVVESLPPALKHYYCVVRLQHKVDTLRKCIHALDAKFVIVFMNHTKQLKDVVFKLEARGVKAAELHGDLGKLGRSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRNGTVLTICEESEVFVVRKLKKQLEIPIACCNFVEGKLTITEEEENALRSTS