Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61402.t1 | KEH27104.1 | 94.9 | 372 | 19 | 0 | 3 | 374 | 36 | 407 | 2.00E-215 | 758.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61402.t1 | P14749 | 75.8 | 368 | 89 | 0 | 5 | 372 | 43 | 410 | 5.7e-171 | 601.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61402.t1 | A0A072UBB6 | 94.9 | 372 | 19 | 0 | 3 | 374 | 36 | 407 | 1.4e-215 | 758.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene87684 | MS.gene61402 | PPI |
| MS.gene87685 | MS.gene61402 | PPI |
| MS.gene92763 | MS.gene61402 | PPI |
| MS.gene013419 | MS.gene61402 | PPI |
| MS.gene06516 | MS.gene61402 | PPI |
| MS.gene059347 | MS.gene61402 | PPI |
| MS.gene27500 | MS.gene61402 | PPI |
| MS.gene036941 | MS.gene61402 | PPI |
| MS.gene036942 | MS.gene61402 | PPI |
| MS.gene049391 | MS.gene61402 | PPI |
| MS.gene92764 | MS.gene61402 | PPI |
| MS.gene27501 | MS.gene61402 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61402.t1 | MTR_6g086575 | 94.892 | 372 | 19 | 0 | 3 | 374 | 36 | 407 | 0.0 | 741 |
| MS.gene61402.t1 | MTR_6g086625 | 95.430 | 372 | 17 | 0 | 3 | 374 | 37 | 408 | 0.0 | 741 |
| MS.gene61402.t1 | MTR_1g077480 | 91.711 | 374 | 31 | 0 | 1 | 374 | 41 | 414 | 0.0 | 718 |
| MS.gene61402.t1 | MTR_1g077520 | 82.834 | 367 | 63 | 0 | 5 | 371 | 41 | 407 | 0.0 | 653 |
| MS.gene61402.t1 | MTR_6g069140 | 77.446 | 368 | 83 | 0 | 4 | 371 | 52 | 419 | 0.0 | 617 |
| MS.gene61402.t1 | MTR_1g077520 | 83.333 | 294 | 49 | 0 | 5 | 298 | 41 | 334 | 0.0 | 531 |
| MS.gene61402.t1 | MTR_7g073650 | 63.686 | 369 | 132 | 2 | 5 | 371 | 38 | 406 | 0.0 | 508 |
| MS.gene61402.t1 | MTR_7g073640 | 63.686 | 369 | 132 | 2 | 5 | 371 | 39 | 407 | 0.0 | 508 |
| MS.gene61402.t1 | MTR_3g094160 | 61.995 | 371 | 136 | 3 | 8 | 374 | 59 | 428 | 1.39e-176 | 498 |
| MS.gene61402.t1 | MTR_1g078410 | 56.316 | 190 | 32 | 1 | 1 | 190 | 40 | 178 | 6.32e-65 | 204 |
| MS.gene61402.t1 | MTR_0279s0030 | 53.659 | 123 | 55 | 2 | 251 | 371 | 101 | 223 | 3.99e-38 | 137 |
| MS.gene61402.t1 | MTR_0279s0030 | 53.659 | 123 | 55 | 2 | 251 | 371 | 185 | 307 | 4.87e-37 | 136 |
| MS.gene61402.t1 | MTR_0279s0030 | 53.659 | 123 | 55 | 2 | 251 | 371 | 250 | 372 | 2.46e-36 | 135 |
| MS.gene61402.t1 | MTR_8g089725 | 25.745 | 470 | 232 | 17 | 18 | 372 | 38 | 505 | 2.56e-27 | 113 |
| MS.gene61402.t1 | MTR_8g089735 | 25.532 | 470 | 233 | 17 | 18 | 372 | 38 | 505 | 1.82e-26 | 110 |
| MS.gene61402.t1 | MTR_2g096530 | 27.507 | 349 | 163 | 12 | 18 | 279 | 40 | 385 | 1.31e-22 | 99.8 |
| MS.gene61402.t1 | MTR_8g089745 | 26.437 | 348 | 169 | 12 | 18 | 280 | 38 | 383 | 2.77e-21 | 95.5 |
| MS.gene61402.t1 | MTR_3g086580 | 26.050 | 357 | 170 | 11 | 14 | 279 | 36 | 389 | 4.11e-21 | 95.5 |
| MS.gene61402.t1 | MTR_8g089745 | 26.667 | 360 | 174 | 13 | 6 | 280 | 29 | 383 | 5.88e-21 | 95.1 |
| MS.gene61402.t1 | MTR_8g089740 | 26.870 | 361 | 173 | 14 | 6 | 280 | 24 | 379 | 3.75e-20 | 92.4 |
| MS.gene61402.t1 | MTR_3g086580 | 29.609 | 179 | 97 | 6 | 128 | 279 | 26 | 202 | 1.29e-13 | 72.4 |
| MS.gene61402.t1 | MTR_3g094180 | 47.945 | 73 | 32 | 2 | 284 | 350 | 7 | 79 | 1.28e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61402.t1 | AT5G08370 | 71.858 | 366 | 103 | 0 | 9 | 374 | 31 | 396 | 0.0 | 581 |
| MS.gene61402.t1 | AT5G08370 | 71.858 | 366 | 103 | 0 | 9 | 374 | 5 | 370 | 0.0 | 579 |
| MS.gene61402.t1 | AT5G08380 | 62.803 | 371 | 137 | 1 | 2 | 371 | 38 | 408 | 4.17e-180 | 506 |
| MS.gene61402.t1 | AT3G56310 | 64.305 | 367 | 126 | 4 | 10 | 372 | 65 | 430 | 2.56e-179 | 505 |
| MS.gene61402.t1 | AT3G56310 | 60.218 | 367 | 117 | 5 | 10 | 372 | 65 | 406 | 6.60e-161 | 457 |
| MS.gene61402.t1 | AT5G08380 | 65.591 | 279 | 96 | 0 | 2 | 280 | 38 | 316 | 7.97e-142 | 405 |
| MS.gene61402.t1 | AT3G26380 | 25.788 | 349 | 169 | 12 | 18 | 279 | 42 | 387 | 9.14e-22 | 97.1 |
| MS.gene61402.t1 | AT3G26380 | 25.788 | 349 | 169 | 12 | 18 | 279 | 42 | 387 | 2.25e-21 | 96.3 |
Find 94 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGTTGATGCAAGAGATTTA+TGG | 0.246206 | 6.3:-79961550 | MS.gene61402:CDS |
| ATGCCAAAACATTTGCTTCT+TGG | 0.258381 | 6.3:-79963157 | MS.gene61402:CDS |
| TCAACACTATCATTGGTTTC+GGG | 0.266635 | 6.3:-79961433 | MS.gene61402:CDS |
| ACAAAGTAGCAGTGGTCTTA+TGG | 0.274504 | 6.3:-79961640 | MS.gene61402:CDS |
| ATCGTGCCCATTTCAGCATT+TGG | 0.278804 | 6.3:-79962258 | MS.gene61402:CDS |
| GGGTACAAGTATATCAATTT+AGG | 0.295779 | 6.3:-79963843 | MS.gene61402:intron |
| TGCCAAAACATTTGCTTCTT+GGG | 0.296895 | 6.3:-79963156 | MS.gene61402:intron |
| TTAAAGATGTTAGGGAAATA+TGG | 0.303082 | 6.3:-79963409 | MS.gene61402:intron |
| TTTCCAACTTCGAGCATATC+AGG | 0.305679 | 6.3:+79962304 | None:intergenic |
| CTCAACACTATCATTGGTTT+CGG | 0.310793 | 6.3:-79961434 | MS.gene61402:CDS |
| AAGAGTTATATGTTGCAAAA+TGG | 0.314815 | 6.3:-79964269 | MS.gene61402:CDS |
| ATATTACAACCAACTAATAA+AGG | 0.326535 | 6.3:+79962129 | None:intergenic |
| CTAATGCCCAAATGCTGAAA+TGG | 0.353093 | 6.3:+79962251 | None:intergenic |
| CAAAAGCAACAATGATTTAG+AGG | 0.357578 | 6.3:-79961927 | MS.gene61402:intron |
| AGTTGATGCAAGAGATTTAT+GGG | 0.361924 | 6.3:-79961549 | MS.gene61402:CDS |
| TCGTGCCCATTTCAGCATTT+GGG | 0.362441 | 6.3:-79962257 | MS.gene61402:CDS |
| TACCCAAGAAGCAAATGTTT+TGG | 0.367399 | 6.3:+79963154 | None:intergenic |
| TAATAGATGTAAACGACAAA+TGG | 0.370517 | 6.3:-79962472 | MS.gene61402:CDS |
| TATGATAACTGTCACAATAA+TGG | 0.370763 | 6.3:-79963005 | MS.gene61402:CDS |
| CAGGAGATGTTAAAGATAAC+TGG | 0.372309 | 6.3:-79962659 | MS.gene61402:CDS |
| TGGAATAGTTGGAACCATTT+CGG | 0.374598 | 6.3:-79964042 | MS.gene61402:CDS |
| TATTACAACCAACTAATAAA+GGG | 0.382437 | 6.3:+79962130 | None:intergenic |
| TGATGTTCAGATGGAATAGT+TGG | 0.389098 | 6.3:-79964053 | MS.gene61402:intron |
| TTTGATAAGGCTTCACTCAT+TGG | 0.390610 | 6.3:+79962858 | None:intergenic |
| GTAGATAAACTTGGAGTTCA+AGG | 0.392836 | 6.3:-79961959 | MS.gene61402:intron |
| AGTGAAGCCTTATCAAAATC+TGG | 0.394360 | 6.3:-79962852 | MS.gene61402:CDS |
| CATATAACTCTTAATCTTAG+TGG | 0.397865 | 6.3:+79964280 | None:intergenic |
| TGAAGGAAACGTTGAAGCCT+TGG | 0.402252 | 6.3:+79963383 | None:intergenic |
| AAATAGGCCCCTTTATTAGT+TGG | 0.402531 | 6.3:-79962138 | MS.gene61402:intron |
| CATTGATATTGCAACCGAAA+TGG | 0.410209 | 6.3:+79964028 | None:intergenic |
| GCAGCACTCAACACTATCAT+TGG | 0.412913 | 6.3:-79961440 | MS.gene61402:intron |
| TCAACTGGCCTTGCTGCCCT+AGG | 0.416149 | 6.3:-79963864 | MS.gene61402:CDS |
| CACAGGAAAGGCTTGAAGTT+GGG | 0.422305 | 6.3:-79963333 | MS.gene61402:CDS |
| GAAAGTTTAATCCGAGATAC+AGG | 0.426792 | 6.3:-79964006 | MS.gene61402:intron |
| TAAACGTATGCCTGGATCAC+TGG | 0.433474 | 6.3:-79963195 | MS.gene61402:CDS |
| ATTTCATGTCCCAGTGATCC+AGG | 0.452806 | 6.3:+79963185 | None:intergenic |
| TTGGGAATCTATTCAGATGC+TGG | 0.462560 | 6.3:-79963315 | MS.gene61402:CDS |
| GACAAATGGGCATCTTATGC+TGG | 0.464580 | 6.3:-79962458 | MS.gene61402:CDS |
| GCTGATGCGATGGTGTCAAC+TGG | 0.466489 | 6.3:-79963879 | MS.gene61402:CDS |
| GATATGCTCGAAGTTGGAAA+TGG | 0.467367 | 6.3:-79962301 | MS.gene61402:CDS |
| TAATGCCCAAATGCTGAAAT+GGG | 0.470549 | 6.3:+79962252 | None:intergenic |
| GGTAATAGTTGGAGAACAAC+AGG | 0.470552 | 6.3:-79962678 | MS.gene61402:CDS |
| TTCTAGCTCATTATATTCAC+AGG | 0.476144 | 6.3:-79963350 | MS.gene61402:CDS |
| AATAGATGTAAACGACAAAT+GGG | 0.481120 | 6.3:-79962471 | MS.gene61402:CDS |
| CAGCATTTGGGCATTAGCTA+AGG | 0.486215 | 6.3:-79962245 | MS.gene61402:intron |
| TGTGGTATTGTAGATAAACT+TGG | 0.489705 | 6.3:-79961968 | MS.gene61402:intron |
| AATTGATATACTTGTACCCT+AGG | 0.490789 | 6.3:+79963847 | None:intergenic |
| TCTTCTTCTCTATGTGTGAA+TGG | 0.495440 | 6.3:-79962821 | MS.gene61402:intron |
| AAGGCTTCAACGTTTCCTTC+AGG | 0.495513 | 6.3:-79963381 | MS.gene61402:CDS |
| ACTTGTAGTAAACGTATGCC+TGG | 0.499229 | 6.3:-79963203 | MS.gene61402:CDS |
| GATCCTGATATGCTCGAAGT+TGG | 0.500070 | 6.3:-79962307 | MS.gene61402:CDS |
| TCACAGGAAAGGCTTGAAGT+TGG | 0.502672 | 6.3:-79963334 | MS.gene61402:CDS |
| GAAGGAAACGTTGAAGCCTT+GGG | 0.511297 | 6.3:+79963384 | None:intergenic |
| ATGGTATAAGTGTTAGAGAA+AGG | 0.512588 | 6.3:-79962986 | MS.gene61402:intron |
| ATGCAACAGTAACTGCATCT+TGG | 0.514796 | 6.3:-79961601 | MS.gene61402:CDS |
| GATAAGGCTTCACTCATTGG+TGG | 0.521866 | 6.3:+79962861 | None:intergenic |
| TAATTACCATTCCATCCTCC+AGG | 0.523855 | 6.3:+79962434 | None:intergenic |
| AAATGGGCACGATATTCCTC+TGG | 0.529736 | 6.3:+79962268 | None:intergenic |
| TATATGTTGCAAAATGGACT+TGG | 0.531723 | 6.3:-79964263 | MS.gene61402:CDS |
| CAACTGGCCTTGCTGCCCTA+GGG | 0.535222 | 6.3:-79963863 | MS.gene61402:CDS |
| GAAAGGAAGATCCAGCAACA+TGG | 0.542444 | 6.3:-79962713 | MS.gene61402:CDS |
| CTTATGCTGGACCTGGAGGA+TGG | 0.545149 | 6.3:-79962445 | MS.gene61402:CDS |
| TGGGCATCTTATGCTGGACC+TGG | 0.550800 | 6.3:-79962452 | MS.gene61402:CDS |
| GCTACTTTGTTATTAGTGAG+AGG | 0.550815 | 6.3:+79961653 | None:intergenic |
| CTATGGAGATAGGTGTGGGC+AGG | 0.555854 | 6.3:-79961677 | MS.gene61402:intron |
| TGGTTGTAATATTCAAGCAA+TGG | 0.558395 | 6.3:-79962118 | MS.gene61402:CDS |
| GCTCATTATATTCACAGGAA+AGG | 0.565444 | 6.3:-79963345 | MS.gene61402:CDS |
| AAACATAGATACCTGTATCT+CGG | 0.568820 | 6.3:+79963995 | None:intergenic |
| TGGGAATCTATTCAGATGCT+GGG | 0.568871 | 6.3:-79963314 | MS.gene61402:intron |
| TATCATTTCAGCTGATGCGA+TGG | 0.569529 | 6.3:-79963889 | MS.gene61402:intron |
| AAACGTATGCCTGGATCACT+GGG | 0.570234 | 6.3:-79963194 | MS.gene61402:CDS |
| ACTGCATCTTGGTCAGACAT+AGG | 0.575528 | 6.3:-79961590 | MS.gene61402:CDS |
| CAACACTATCATTGGTTTCG+GGG | 0.576577 | 6.3:-79961432 | MS.gene61402:CDS |
| GGAACTTAATCGAGACTCAC+AGG | 0.580260 | 6.3:-79963588 | MS.gene61402:intron |
| TTAGGGAAATATGGTTCCCA+AGG | 0.580295 | 6.3:-79963400 | MS.gene61402:intron |
| CACTAATAACAAAGTAGCAG+TGG | 0.589537 | 6.3:-79961648 | MS.gene61402:CDS |
| AAAGGAAGATCCAGCAACAT+GGG | 0.591497 | 6.3:-79962712 | MS.gene61402:CDS |
| GCTAGAAGCTTGATTCCTGA+AGG | 0.597203 | 6.3:+79963366 | None:intergenic |
| AACACTATCATTGGTTTCGG+GGG | 0.597511 | 6.3:-79961431 | MS.gene61402:CDS |
| GCTGGACCTGGAGGATGGAA+TGG | 0.600529 | 6.3:-79962440 | MS.gene61402:intron |
| ATGTTAAAGATAACTGGCAT+CGG | 0.601904 | 6.3:-79962653 | MS.gene61402:intron |
| ATGCTCGAAGTTGGAAATGG+AGG | 0.603679 | 6.3:-79962298 | MS.gene61402:CDS |
| ATTACAACCAACTAATAAAG+GGG | 0.610550 | 6.3:+79962131 | None:intergenic |
| GATGGTATAGCATACCCCAT+GGG | 0.612388 | 6.3:+79964230 | None:intergenic |
| AAGCCTTATCAAAATCTGGA+AGG | 0.626040 | 6.3:-79962848 | MS.gene61402:CDS |
| ACTTGTACCCTAGGGCAGCA+AGG | 0.626170 | 6.3:+79963856 | None:intergenic |
| GAAGTTATTGCAGTAAACCA+AGG | 0.635887 | 6.3:-79962063 | MS.gene61402:intron |
| ATTGATATACTTGTACCCTA+GGG | 0.641607 | 6.3:+79963848 | None:intergenic |
| ATGGTATAGCATACCCCATG+GGG | 0.644504 | 6.3:+79964231 | None:intergenic |
| GCATCTTATGCTGGACCTGG+AGG | 0.645529 | 6.3:-79962449 | MS.gene61402:CDS |
| AAATGGAGGCATGACACCAG+AGG | 0.680032 | 6.3:-79962284 | MS.gene61402:CDS |
| TGGTATAGCATACCCCATGG+GGG | 0.692128 | 6.3:+79964232 | None:intergenic |
| TGATGCAAGAGATTTATGGG+AGG | 0.716729 | 6.3:-79961546 | MS.gene61402:intron |
| GGTATAGCATACCCCATGGG+GGG | 0.727686 | 6.3:+79964233 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAACATACAAATTAA+TGG | + | chr6.3:79962119-79962138 | None:intergenic | 10.0% |
| !! | AACAACATAAGATTATAAAT+AGG | + | chr6.3:79962578-79962597 | None:intergenic | 15.0% |
| !! | AATCATAAAAGGAAAAAAAA+TGG | + | chr6.3:79961502-79961521 | None:intergenic | 15.0% |
| !! | AGAAAAATTTGAATCAATAT+TGG | + | chr6.3:79962603-79962622 | None:intergenic | 15.0% |
| !! | AGAAAATGAAATATCAATTA+TGG | + | chr6.3:79962884-79962903 | None:intergenic | 15.0% |
| !! | CATCATAAATATAATTGATT+AGG | + | chr6.3:79961582-79961601 | None:intergenic | 15.0% |
| !! | GTATTAATTTCTTCAATAAA+GGG | - | chr6.3:79963636-79963655 | MS.gene61402:intron | 15.0% |
| !! | TAAACACCATAAAATATAAA+GGG | + | chr6.3:79963765-79963784 | None:intergenic | 15.0% |
| !! | TATACTTTCATGAATTTAAT+TGG | + | chr6.3:79961553-79961572 | None:intergenic | 15.0% |
| !! | TGTATTAATTTCTTCAATAA+AGG | - | chr6.3:79963635-79963654 | MS.gene61402:intron | 15.0% |
| !! | TTAAACACCATAAAATATAA+AGG | + | chr6.3:79963766-79963785 | None:intergenic | 15.0% |
| !!! | ATTGATTCAAATTTTTCTTT+AGG | - | chr6.3:79962605-79962624 | MS.gene61402:intron | 15.0% |
| !!! | GTTTTTTTAAACTATTTTAC+TGG | - | chr6.3:79963485-79963504 | MS.gene61402:intron | 15.0% |
| !!! | TTGATTCAAATTTTTCTTTA+GGG | - | chr6.3:79962606-79962625 | MS.gene61402:intron | 15.0% |
| !! | AACTGTAAAAATAATAGCTT+AGG | + | chr6.3:79961702-79961721 | None:intergenic | 20.0% |
| !! | ACTGTAAAAATAATAGCTTA+GGG | + | chr6.3:79961701-79961720 | None:intergenic | 20.0% |
| !! | ACTTCTTACTAAAAATTCTA+TGG | - | chr6.3:79963956-79963975 | MS.gene61402:intron | 20.0% |
| !! | ATATTACAACCAACTAATAA+AGG | + | chr6.3:79963524-79963543 | None:intergenic | 20.0% |
| !! | ATCTAATATCCAAACATTAA+TGG | + | chr6.3:79963326-79963345 | None:intergenic | 20.0% |
| !! | ATGACAAATATAGATAAAGA+TGG | + | chr6.3:79961441-79961460 | None:intergenic | 20.0% |
| !! | CACATATGAGAAATAAATAT+TGG | + | chr6.3:79963303-79963322 | None:intergenic | 20.0% |
| !! | TATTACAACCAACTAATAAA+GGG | + | chr6.3:79963523-79963542 | None:intergenic | 20.0% |
| !! | TGAGAAACAATAAATTCATA+TGG | - | chr6.3:79964163-79964182 | MS.gene61402:intron | 20.0% |
| !! | TTATATTTATGATGTTCAGA+TGG | - | chr6.3:79961588-79961607 | MS.gene61402:CDS | 20.0% |
| !!! | AATTGCTTTTTTGAAACATA+GGG | - | chr6.3:79962914-79962933 | MS.gene61402:intron | 20.0% |
| !!! | ATAAATTCATATGGTTTTGA+TGG | - | chr6.3:79964172-79964191 | MS.gene61402:intron | 20.0% |
| !!! | CTATTTTACTGGATTTAAAT+AGG | - | chr6.3:79963496-79963515 | MS.gene61402:intron | 20.0% |
| !!! | TAATTGCTTTTTTGAAACAT+AGG | - | chr6.3:79962913-79962932 | MS.gene61402:intron | 20.0% |
| !!! | TTCTTTCCCTTTATATTTTA+TGG | - | chr6.3:79963756-79963775 | MS.gene61402:intron | 20.0% |
| !!! | TTTTTTTTCAGATGATTGTT+GGG | - | chr6.3:79962038-79962057 | MS.gene61402:intron | 20.0% |
| !!! | TTTTTTTTTCAGATGATTGT+TGG | - | chr6.3:79962037-79962056 | MS.gene61402:intron | 20.0% |
| ! | AAATTAGTTGGTCATGATAT+AGG | + | chr6.3:79963133-79963152 | None:intergenic | 25.0% |
| ! | AAGAGTTATATGTTGCAAAA+TGG | - | chr6.3:79961381-79961400 | MS.gene61402:CDS | 25.0% |
| ! | AATAGATGTAAACGACAAAT+GGG | - | chr6.3:79963179-79963198 | MS.gene61402:CDS | 25.0% |
| ! | ACAAGTATATCAATTTAGGT+AGG | - | chr6.3:79961811-79961830 | MS.gene61402:intron | 25.0% |
| ! | ACTAAAAATTCTATGGAGAT+AGG | - | chr6.3:79963963-79963982 | MS.gene61402:intron | 25.0% |
| ! | ATTACAACCAACTAATAAAG+GGG | + | chr6.3:79963522-79963541 | None:intergenic | 25.0% |
| ! | CATATAACTCTTAATCTTAG+TGG | + | chr6.3:79961373-79961392 | None:intergenic | 25.0% |
| ! | CTAACAAGTTAAAGATGTTA+GGG | - | chr6.3:79962233-79962252 | MS.gene61402:intron | 25.0% |
| ! | CTTTATGTGTGAATCATAAA+AGG | + | chr6.3:79961513-79961532 | None:intergenic | 25.0% |
| ! | TAATAGATGTAAACGACAAA+TGG | - | chr6.3:79963178-79963197 | MS.gene61402:CDS | 25.0% |
| ! | TATGATAACTGTCACAATAA+TGG | - | chr6.3:79962645-79962664 | MS.gene61402:intron | 25.0% |
| ! | TATGTTCTTCAAATGCAAAT+AGG | - | chr6.3:79962696-79962715 | MS.gene61402:CDS | 25.0% |
| ! | TATTACTTTGTCTCAACAAT+AGG | + | chr6.3:79963453-79963472 | None:intergenic | 25.0% |
| ! | TTAAAGATGTTAGGGAAATA+TGG | - | chr6.3:79962241-79962260 | MS.gene61402:intron | 25.0% |
| ! | TTAACTTTCAACTCAAAACA+TGG | - | chr6.3:79963824-79963843 | MS.gene61402:intron | 25.0% |
| !!! | ATTGCTTTTTTGAAACATAG+GGG | - | chr6.3:79962915-79962934 | MS.gene61402:intron | 25.0% |
| !!! | CTAACATCTTTAACTTGTTA+GGG | + | chr6.3:79962234-79962253 | None:intergenic | 25.0% |
| !!! | TAACATCTTTAACTTGTTAG+GGG | + | chr6.3:79962233-79962252 | None:intergenic | 25.0% |
| AAACATAGATACCTGTATCT+CGG | + | chr6.3:79961658-79961677 | None:intergenic | 30.0% | |
| AATTGATATACTTGTACCCT+AGG | + | chr6.3:79961806-79961825 | None:intergenic | 30.0% | |
| AGTATATCAATTTAGGTAGG+TGG | - | chr6.3:79961814-79961833 | MS.gene61402:intron | 30.0% | |
| ATCTATTATAGAAGTCATGC+TGG | + | chr6.3:79963166-79963185 | None:intergenic | 30.0% | |
| ATGGTATAAGTGTTAGAGAA+AGG | - | chr6.3:79962664-79962683 | MS.gene61402:CDS | 30.0% | |
| ATGTTAAAGATAACTGGCAT+CGG | - | chr6.3:79962997-79963016 | MS.gene61402:CDS | 30.0% | |
| ATTGATATACTTGTACCCTA+GGG | + | chr6.3:79961805-79961824 | None:intergenic | 30.0% | |
| CAAAAGCAACAATGATTTAG+AGG | - | chr6.3:79963723-79963742 | MS.gene61402:intron | 30.0% | |
| CCTAACAAGTTAAAGATGTT+AGG | - | chr6.3:79962232-79962251 | MS.gene61402:intron | 30.0% | |
| GGGGATGAAATAAAATTAGT+TGG | + | chr6.3:79963145-79963164 | None:intergenic | 30.0% | |
| GGGTACAAGTATATCAATTT+AGG | - | chr6.3:79961807-79961826 | MS.gene61402:intron | 30.0% | |
| TCTATTATAGAAGTCATGCT+GGG | + | chr6.3:79963165-79963184 | None:intergenic | 30.0% | |
| TGGTTGTAATATTCAAGCAA+TGG | - | chr6.3:79963532-79963551 | MS.gene61402:intron | 30.0% | |
| TGTGGTATTGTAGATAAACT+TGG | - | chr6.3:79963682-79963701 | MS.gene61402:intron | 30.0% | |
| TTTCATACGTTGTGTAAATC+AGG | - | chr6.3:79962763-79962782 | MS.gene61402:intron | 30.0% | |
| ! | AGTTGATGCAAGAGATTTAT+GGG | - | chr6.3:79964101-79964120 | MS.gene61402:intron | 30.0% |
| ! | TAGTTGATGCAAGAGATTTA+TGG | - | chr6.3:79964100-79964119 | MS.gene61402:intron | 30.0% |
| ! | TATATGTTGCAAAATGGACT+TGG | - | chr6.3:79961387-79961406 | MS.gene61402:CDS | 30.0% |
| ! | TCATATGTGCCATTAATGTT+TGG | - | chr6.3:79963314-79963333 | MS.gene61402:intron | 30.0% |
| !! | CATTAGTTTGCATTTATCGT+AGG | + | chr6.3:79963861-79963880 | None:intergenic | 30.0% |
| !! | CCTAACATCTTTAACTTGTT+AGG | + | chr6.3:79962235-79962254 | None:intergenic | 30.0% |
| !! | TTCTAGCTCATTATATTCAC+AGG | - | chr6.3:79962300-79962319 | MS.gene61402:CDS | 30.0% |
| !!! | TTTTTTGAAACATAGGGGAA+AGG | - | chr6.3:79962920-79962939 | MS.gene61402:intron | 30.0% |
| AAATAGGCCCCTTTATTAGT+TGG | - | chr6.3:79963512-79963531 | MS.gene61402:intron | 35.0% | |
| AAATTCTATGGAGATAGGTG+TGG | - | chr6.3:79963968-79963987 | MS.gene61402:intron | 35.0% | |
| AATTCTATGGAGATAGGTGT+GGG | - | chr6.3:79963969-79963988 | MS.gene61402:intron | 35.0% | |
| ATGCCAAAACATTTGCTTCT+TGG | - | chr6.3:79962493-79962512 | MS.gene61402:intron | 35.0% | |
| CACTAATAACAAAGTAGCAG+TGG | - | chr6.3:79964002-79964021 | MS.gene61402:intron | 35.0% | |
| CAGGAGATGTTAAAGATAAC+TGG | - | chr6.3:79962991-79963010 | MS.gene61402:CDS | 35.0% | |
| CATGCATAACATTACTAGTG+AGG | + | chr6.3:79963247-79963266 | None:intergenic | 35.0% | |
| CATTGATATTGCAACCGAAA+TGG | + | chr6.3:79961625-79961644 | None:intergenic | 35.0% | |
| CCAAAAATGTGGGTAATAGT+TGG | - | chr6.3:79962961-79962980 | MS.gene61402:intron | 35.0% | |
| CTATTATAGAAGTCATGCTG+GGG | + | chr6.3:79963164-79963183 | None:intergenic | 35.0% | |
| GAAAGTTTAATCCGAGATAC+AGG | - | chr6.3:79961644-79961663 | MS.gene61402:CDS | 35.0% | |
| GAAGTTATTGCAGTAAACCA+AGG | - | chr6.3:79963587-79963606 | MS.gene61402:intron | 35.0% | |
| GCTCATTATATTCACAGGAA+AGG | - | chr6.3:79962305-79962324 | MS.gene61402:CDS | 35.0% | |
| GTAGATAAACTTGGAGTTCA+AGG | - | chr6.3:79963691-79963710 | MS.gene61402:intron | 35.0% | |
| TAATGCCCAAATGCTGAAAT+GGG | + | chr6.3:79963401-79963420 | None:intergenic | 35.0% | |
| TCAAGAAAGTCTACTTACCT+TGG | + | chr6.3:79963607-79963626 | None:intergenic | 35.0% | |
| TCTTCTTCTCTATGTGTGAA+TGG | - | chr6.3:79962829-79962848 | MS.gene61402:CDS | 35.0% | |
| TGATGTTCAGATGGAATAGT+TGG | - | chr6.3:79961597-79961616 | MS.gene61402:CDS | 35.0% | |
| TGCCAAAACATTTGCTTCTT+GGG | - | chr6.3:79962494-79962513 | MS.gene61402:intron | 35.0% | |
| TGGAATAGTTGGAACCATTT+CGG | - | chr6.3:79961608-79961627 | MS.gene61402:CDS | 35.0% | |
| TTCAACTCAAAACATGGATC+TGG | - | chr6.3:79963830-79963849 | MS.gene61402:intron | 35.0% | |
| TTTGATAAGGCTTCACTCAT+TGG | + | chr6.3:79962795-79962814 | None:intergenic | 35.0% | |
| ! | AAGCCTTATCAAAATCTGGA+AGG | - | chr6.3:79962802-79962821 | MS.gene61402:intron | 35.0% |
| ! | AGTGAAGCCTTATCAAAATC+TGG | - | chr6.3:79962798-79962817 | MS.gene61402:intron | 35.0% |
| ! | CCAACTATTACCCACATTTT+TGG | + | chr6.3:79962964-79962983 | None:intergenic | 35.0% |
| ! | TACCCAAGAAGCAAATGTTT+TGG | + | chr6.3:79962499-79962518 | None:intergenic | 35.0% |
| !! | CTCAACACTATCATTGGTTT+CGG | - | chr6.3:79964216-79964235 | MS.gene61402:intron | 35.0% |
| !! | GCTACTTTGTTATTAGTGAG+AGG | + | chr6.3:79964000-79964019 | None:intergenic | 35.0% |
| !! | TCAACACTATCATTGGTTTC+GGG | - | chr6.3:79964217-79964236 | MS.gene61402:intron | 35.0% |
| !! | TGACCTTCCAGATTTTGATA+AGG | + | chr6.3:79962808-79962827 | None:intergenic | 35.0% |
| !! | TTTTTCAGATGATTGTTGGG+CGG | - | chr6.3:79962041-79962060 | MS.gene61402:intron | 35.0% |
| AAAGGAAGATCCAGCAACAT+GGG | - | chr6.3:79962938-79962957 | MS.gene61402:intron | 40.0% | |
| ACTTGTAGTAAACGTATGCC+TGG | - | chr6.3:79962447-79962466 | MS.gene61402:CDS | 40.0% | |
| ATGCAACAGTAACTGCATCT+TGG | - | chr6.3:79964049-79964068 | MS.gene61402:intron | 40.0% | |
| CTAATGCCCAAATGCTGAAA+TGG | + | chr6.3:79963402-79963421 | None:intergenic | 40.0% | |
| GATATGCTCGAAGTTGGAAA+TGG | - | chr6.3:79963349-79963368 | MS.gene61402:CDS | 40.0% | |
| GGTAATAGTTGGAGAACAAC+AGG | - | chr6.3:79962972-79962991 | MS.gene61402:intron | 40.0% | |
| TAATTACCATTCCATCCTCC+AGG | + | chr6.3:79963219-79963238 | None:intergenic | 40.0% | |
| TATCATTTCAGCTGATGCGA+TGG | - | chr6.3:79961761-79961780 | MS.gene61402:intron | 40.0% | |
| TGATGCAAGAGATTTATGGG+AGG | - | chr6.3:79964104-79964123 | MS.gene61402:intron | 40.0% | |
| TGGGAATCTATTCAGATGCT+GGG | - | chr6.3:79962336-79962355 | MS.gene61402:intron | 40.0% | |
| TTAGGGAAATATGGTTCCCA+AGG | - | chr6.3:79962250-79962269 | MS.gene61402:CDS | 40.0% | |
| TTGGGAATCTATTCAGATGC+TGG | - | chr6.3:79962335-79962354 | MS.gene61402:intron | 40.0% | |
| TTTCCAACTTCGAGCATATC+AGG | + | chr6.3:79963349-79963368 | None:intergenic | 40.0% | |
| ! | ACAAAGTAGCAGTGGTCTTA+TGG | - | chr6.3:79964010-79964029 | MS.gene61402:CDS | 40.0% |
| ! | GTGTGAATGGTGAGTTGAAT+TGG | - | chr6.3:79962842-79962861 | MS.gene61402:CDS | 40.0% |
| !! | AACACTATCATTGGTTTCGG+GGG | - | chr6.3:79964219-79964238 | MS.gene61402:intron | 40.0% |
| !! | CAACACTATCATTGGTTTCG+GGG | - | chr6.3:79964218-79964237 | MS.gene61402:intron | 40.0% |
| AAACGTATGCCTGGATCACT+GGG | - | chr6.3:79962456-79962475 | MS.gene61402:CDS | 45.0% | |
| AAATGGGCACGATATTCCTC+TGG | + | chr6.3:79963385-79963404 | None:intergenic | 45.0% | |
| AAGGCTTCAACGTTTCCTTC+AGG | - | chr6.3:79962269-79962288 | MS.gene61402:CDS | 45.0% | |
| ACTGCATCTTGGTCAGACAT+AGG | - | chr6.3:79964060-79964079 | MS.gene61402:intron | 45.0% | |
| AGATGGTATAGCATACCCCA+TGG | + | chr6.3:79961424-79961443 | None:intergenic | 45.0% | |
| AGCAACATGGGCCAAAAATG+TGG | - | chr6.3:79962950-79962969 | MS.gene61402:intron | 45.0% | |
| ATCGTGCCCATTTCAGCATT+TGG | - | chr6.3:79963392-79963411 | MS.gene61402:CDS | 45.0% | |
| ATGCTCGAAGTTGGAAATGG+AGG | - | chr6.3:79963352-79963371 | MS.gene61402:CDS | 45.0% | |
| ATGGTATAGCATACCCCATG+GGG | + | chr6.3:79961422-79961441 | None:intergenic | 45.0% | |
| ATTTCATGTCCCAGTGATCC+AGG | + | chr6.3:79962468-79962487 | None:intergenic | 45.0% | |
| CACAGGAAAGGCTTGAAGTT+GGG | - | chr6.3:79962317-79962336 | MS.gene61402:intron | 45.0% | |
| CAGCATTTGGGCATTAGCTA+AGG | - | chr6.3:79963405-79963424 | MS.gene61402:intron | 45.0% | |
| GAAAGGAAGATCCAGCAACA+TGG | - | chr6.3:79962937-79962956 | MS.gene61402:intron | 45.0% | |
| GAAGGAAACGTTGAAGCCTT+GGG | + | chr6.3:79962269-79962288 | None:intergenic | 45.0% | |
| GACAAATGGGCATCTTATGC+TGG | - | chr6.3:79963192-79963211 | MS.gene61402:CDS | 45.0% | |
| GATAAGGCTTCACTCATTGG+TGG | + | chr6.3:79962792-79962811 | None:intergenic | 45.0% | |
| GATCCTGATATGCTCGAAGT+TGG | - | chr6.3:79963343-79963362 | MS.gene61402:CDS | 45.0% | |
| GATGGTATAGCATACCCCAT+GGG | + | chr6.3:79961423-79961442 | None:intergenic | 45.0% | |
| GCAACATGGGCCAAAAATGT+GGG | - | chr6.3:79962951-79962970 | MS.gene61402:intron | 45.0% | |
| GCAGCACTCAACACTATCAT+TGG | - | chr6.3:79964210-79964229 | MS.gene61402:intron | 45.0% | |
| GCTAGAAGCTTGATTCCTGA+AGG | + | chr6.3:79962287-79962306 | None:intergenic | 45.0% | |
| GGAACTTAATCGAGACTCAC+AGG | - | chr6.3:79962062-79962081 | MS.gene61402:intron | 45.0% | |
| GGGAGGTAAGAGAGTTAGTT+AGG | - | chr6.3:79964121-79964140 | MS.gene61402:intron | 45.0% | |
| TAAACGTATGCCTGGATCAC+TGG | - | chr6.3:79962455-79962474 | MS.gene61402:CDS | 45.0% | |
| TCACAGGAAAGGCTTGAAGT+TGG | - | chr6.3:79962316-79962335 | MS.gene61402:intron | 45.0% | |
| TCGTGCCCATTTCAGCATTT+GGG | - | chr6.3:79963393-79963412 | MS.gene61402:CDS | 45.0% | |
| TGAAACTCACACGCTTCTTG+TGG | - | chr6.3:79963664-79963683 | MS.gene61402:intron | 45.0% | |
| TGAAGGAAACGTTGAAGCCT+TGG | + | chr6.3:79962270-79962289 | None:intergenic | 45.0% | |
| !!! | ACATTTTTGGCCCATGTTGC+TGG | + | chr6.3:79962951-79962970 | None:intergenic | 45.0% |
| TGGTATAGCATACCCCATGG+GGG | + | chr6.3:79961421-79961440 | None:intergenic | 50.0% | |
| ! | AAATGGAGGCATGACACCAG+AGG | - | chr6.3:79963366-79963385 | MS.gene61402:CDS | 50.0% |
| ACTTGTACCCTAGGGCAGCA+AGG | + | chr6.3:79961797-79961816 | None:intergenic | 55.0% | |
| CTATGGAGATAGGTGTGGGC+AGG | - | chr6.3:79963973-79963992 | MS.gene61402:intron | 55.0% | |
| CTTATGCTGGACCTGGAGGA+TGG | - | chr6.3:79963205-79963224 | MS.gene61402:CDS | 55.0% | |
| GCATCTTATGCTGGACCTGG+AGG | - | chr6.3:79963201-79963220 | MS.gene61402:CDS | 55.0% | |
| GGTATAGCATACCCCATGGG+GGG | + | chr6.3:79961420-79961439 | None:intergenic | 55.0% | |
| TGGGCATCTTATGCTGGACC+TGG | - | chr6.3:79963198-79963217 | MS.gene61402:CDS | 55.0% | |
| ! | GCTGATGCGATGGTGTCAAC+TGG | - | chr6.3:79961771-79961790 | MS.gene61402:intron | 55.0% |
| ACTTGGTCAGACACCCCCCA+TGG | - | chr6.3:79961404-79961423 | MS.gene61402:CDS | 60.0% | |
| CTTGGTCAGACACCCCCCAT+GGG | - | chr6.3:79961405-79961424 | MS.gene61402:CDS | 60.0% | |
| GCTGGACCTGGAGGATGGAA+TGG | - | chr6.3:79963210-79963229 | MS.gene61402:CDS | 60.0% | |
| TTGGTCAGACACCCCCCATG+GGG | - | chr6.3:79961406-79961425 | MS.gene61402:CDS | 60.0% | |
| !! | CAACTGGCCTTGCTGCCCTA+GGG | - | chr6.3:79961787-79961806 | MS.gene61402:intron | 60.0% |
| !! | TCAACTGGCCTTGCTGCCCT+AGG | - | chr6.3:79961786-79961805 | MS.gene61402:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 79961366 | 79964306 | 79961366 | ID=MS.gene61402 |
| chr6.3 | mRNA | 79961366 | 79964306 | 79961366 | ID=MS.gene61402.t1;Parent=MS.gene61402 |
| chr6.3 | exon | 79964245 | 79964306 | 79964245 | ID=MS.gene61402.t1.exon1;Parent=MS.gene61402.t1 |
| chr6.3 | CDS | 79964245 | 79964306 | 79964245 | ID=cds.MS.gene61402.t1;Parent=MS.gene61402.t1 |
| chr6.3 | exon | 79964007 | 79964065 | 79964007 | ID=MS.gene61402.t1.exon2;Parent=MS.gene61402.t1 |
| chr6.3 | CDS | 79964007 | 79964065 | 79964007 | ID=cds.MS.gene61402.t1;Parent=MS.gene61402.t1 |
| chr6.3 | exon | 79963844 | 79963900 | 79963844 | ID=MS.gene61402.t1.exon3;Parent=MS.gene61402.t1 |
| chr6.3 | CDS | 79963844 | 79963900 | 79963844 | ID=cds.MS.gene61402.t1;Parent=MS.gene61402.t1 |
| chr6.3 | exon | 79963589 | 79963623 | 79963589 | ID=MS.gene61402.t1.exon4;Parent=MS.gene61402.t1 |
| chr6.3 | CDS | 79963589 | 79963623 | 79963589 | ID=cds.MS.gene61402.t1;Parent=MS.gene61402.t1 |
| chr6.3 | exon | 79963315 | 79963418 | 79963315 | ID=MS.gene61402.t1.exon5;Parent=MS.gene61402.t1 |
| chr6.3 | CDS | 79963315 | 79963418 | 79963315 | ID=cds.MS.gene61402.t1;Parent=MS.gene61402.t1 |
| chr6.3 | exon | 79963157 | 79963232 | 79963157 | ID=MS.gene61402.t1.exon6;Parent=MS.gene61402.t1 |
| chr6.3 | CDS | 79963157 | 79963232 | 79963157 | ID=cds.MS.gene61402.t1;Parent=MS.gene61402.t1 |
| chr6.3 | exon | 79962987 | 79963045 | 79962987 | ID=MS.gene61402.t1.exon7;Parent=MS.gene61402.t1 |
| chr6.3 | CDS | 79962987 | 79963045 | 79962987 | ID=cds.MS.gene61402.t1;Parent=MS.gene61402.t1 |
| chr6.3 | exon | 79962822 | 79962887 | 79962822 | ID=MS.gene61402.t1.exon8;Parent=MS.gene61402.t1 |
| chr6.3 | CDS | 79962822 | 79962887 | 79962822 | ID=cds.MS.gene61402.t1;Parent=MS.gene61402.t1 |
| chr6.3 | exon | 79962654 | 79962737 | 79962654 | ID=MS.gene61402.t1.exon9;Parent=MS.gene61402.t1 |
| chr6.3 | CDS | 79962654 | 79962737 | 79962654 | ID=cds.MS.gene61402.t1;Parent=MS.gene61402.t1 |
| chr6.3 | exon | 79962441 | 79962505 | 79962441 | ID=MS.gene61402.t1.exon10;Parent=MS.gene61402.t1 |
| chr6.3 | CDS | 79962441 | 79962505 | 79962441 | ID=cds.MS.gene61402.t1;Parent=MS.gene61402.t1 |
| chr6.3 | exon | 79962246 | 79962328 | 79962246 | ID=MS.gene61402.t1.exon11;Parent=MS.gene61402.t1 |
| chr6.3 | CDS | 79962246 | 79962328 | 79962246 | ID=cds.MS.gene61402.t1;Parent=MS.gene61402.t1 |
| chr6.3 | exon | 79962064 | 79962154 | 79962064 | ID=MS.gene61402.t1.exon12;Parent=MS.gene61402.t1 |
| chr6.3 | CDS | 79962064 | 79962154 | 79962064 | ID=cds.MS.gene61402.t1;Parent=MS.gene61402.t1 |
| chr6.3 | exon | 79961928 | 79961977 | 79961928 | ID=MS.gene61402.t1.exon13;Parent=MS.gene61402.t1 |
| chr6.3 | CDS | 79961928 | 79961977 | 79961928 | ID=cds.MS.gene61402.t1;Parent=MS.gene61402.t1 |
| chr6.3 | exon | 79961547 | 79961687 | 79961547 | ID=MS.gene61402.t1.exon14;Parent=MS.gene61402.t1 |
| chr6.3 | CDS | 79961547 | 79961687 | 79961547 | ID=cds.MS.gene61402.t1;Parent=MS.gene61402.t1 |
| chr6.3 | exon | 79961366 | 79961458 | 79961366 | ID=MS.gene61402.t1.exon15;Parent=MS.gene61402.t1 |
| chr6.3 | CDS | 79961366 | 79961458 | 79961366 | ID=cds.MS.gene61402.t1;Parent=MS.gene61402.t1 |
| Gene Sequence |
| Protein sequence |
