Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61746.t1 | XP_003627885.2 | 98.8 | 339 | 4 | 0 | 1 | 339 | 1 | 339 | 2.00E-150 | 542 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61746.t1 | E4NKF8 | 30.3 | 297 | 194 | 5 | 2 | 297 | 399 | 683 | 3.3e-08 | 60.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61746.t1 | G7LGS1 | 98.8 | 339 | 4 | 0 | 1 | 339 | 1 | 339 | 1.5e-150 | 542.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050410 | MS.gene61746 | 0.800563 | 1.36E-48 | -1.69E-46 |
| MS.gene051959 | MS.gene61746 | 0.835672 | 1.46E-56 | -1.69E-46 |
| MS.gene051960 | MS.gene61746 | 0.840397 | 8.91E-58 | -1.69E-46 |
| MS.gene052091 | MS.gene61746 | 0.810682 | 1.02E-50 | -1.69E-46 |
| MS.gene052570 | MS.gene61746 | 0.813802 | 2.13E-51 | -1.69E-46 |
| MS.gene053932 | MS.gene61746 | 0.818073 | 2.37E-52 | -1.69E-46 |
| MS.gene055150 | MS.gene61746 | 0.805673 | 1.19E-49 | -1.69E-46 |
| MS.gene055550 | MS.gene61746 | 0.807983 | 3.87E-50 | -1.69E-46 |
| MS.gene057001 | MS.gene61746 | 0.814676 | 1.36E-51 | -1.69E-46 |
| MS.gene058246 | MS.gene61746 | 0.805222 | 1.48E-49 | -1.69E-46 |
| MS.gene060237 | MS.gene61746 | 0.82818 | 1.04E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene61746 | MS.gene027334 | PPI |
| MS.gene61746 | MS.gene000712 | PPI |
| MS.gene023023 | MS.gene61746 | PPI |
| MS.gene61746 | MS.gene051287 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61746.t1 | MTR_8g039560 | 98.525 | 339 | 5 | 0 | 1 | 339 | 1 | 339 | 0.0 | 669 |
| MS.gene61746.t1 | MTR_2g018010 | 32.441 | 299 | 186 | 7 | 1 | 297 | 389 | 673 | 8.70e-30 | 120 |
| MS.gene61746.t1 | MTR_5g083030 | 31.333 | 300 | 187 | 8 | 2 | 297 | 399 | 683 | 1.13e-27 | 114 |
| MS.gene61746.t1 | MTR_4g485520 | 31.250 | 288 | 180 | 9 | 8 | 294 | 205 | 475 | 5.09e-24 | 102 |
| MS.gene61746.t1 | MTR_4g485520 | 31.250 | 288 | 180 | 9 | 8 | 294 | 373 | 643 | 5.68e-24 | 103 |
| MS.gene61746.t1 | MTR_4g063800 | 31.987 | 297 | 182 | 10 | 3 | 297 | 348 | 626 | 1.05e-23 | 102 |
| MS.gene61746.t1 | MTR_1g094215 | 31.353 | 303 | 187 | 12 | 2 | 300 | 156 | 441 | 1.62e-23 | 100 |
| MS.gene61746.t1 | MTR_1g094215 | 31.353 | 303 | 187 | 12 | 2 | 300 | 339 | 624 | 5.08e-23 | 100 |
| MS.gene61746.t1 | MTR_7g078330 | 27.778 | 288 | 190 | 8 | 4 | 290 | 363 | 633 | 2.36e-20 | 92.4 |
| MS.gene61746.t1 | MTR_3g466220 | 33.755 | 237 | 142 | 7 | 8 | 243 | 553 | 775 | 6.01e-20 | 91.3 |
| MS.gene61746.t1 | MTR_3g466220 | 33.755 | 237 | 142 | 7 | 8 | 243 | 532 | 754 | 7.22e-20 | 91.3 |
| MS.gene61746.t1 | MTR_7g059405 | 29.655 | 290 | 182 | 11 | 10 | 297 | 363 | 632 | 9.10e-20 | 90.5 |
| MS.gene61746.t1 | MTR_7g097020 | 31.837 | 245 | 152 | 7 | 8 | 251 | 482 | 712 | 2.56e-17 | 83.6 |
| MS.gene61746.t1 | MTR_4g028960 | 33.227 | 313 | 171 | 15 | 1 | 297 | 373 | 663 | 3.03e-17 | 83.2 |
| MS.gene61746.t1 | MTR_1g069845 | 27.431 | 288 | 190 | 8 | 8 | 294 | 323 | 592 | 2.32e-16 | 80.5 |
| MS.gene61746.t1 | MTR_1g069845 | 27.431 | 288 | 190 | 8 | 8 | 294 | 444 | 713 | 2.56e-16 | 80.5 |
| MS.gene61746.t1 | MTR_1g069845 | 27.431 | 288 | 190 | 8 | 8 | 294 | 440 | 709 | 2.98e-16 | 80.1 |
| MS.gene61746.t1 | MTR_3g078160 | 28.179 | 291 | 192 | 8 | 10 | 297 | 380 | 656 | 7.51e-16 | 79.0 |
| MS.gene61746.t1 | MTR_3g078160 | 28.767 | 292 | 189 | 10 | 10 | 297 | 380 | 656 | 7.85e-16 | 79.0 |
| MS.gene61746.t1 | MTR_2g011140 | 29.293 | 297 | 182 | 11 | 7 | 297 | 104 | 378 | 4.29e-15 | 75.9 |
| MS.gene61746.t1 | MTR_2g026130 | 28.082 | 292 | 192 | 8 | 7 | 297 | 174 | 448 | 1.86e-14 | 74.3 |
| MS.gene61746.t1 | MTR_4g107010 | 28.302 | 265 | 163 | 9 | 11 | 263 | 386 | 635 | 3.24e-13 | 70.9 |
| MS.gene61746.t1 | MTR_1g018180 | 27.645 | 293 | 192 | 10 | 7 | 297 | 60 | 334 | 1.12e-12 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61746.t1 | AT1G08315 | 59.936 | 312 | 119 | 3 | 3 | 310 | 4 | 313 | 1.61e-124 | 360 |
| MS.gene61746.t1 | AT2G23140 | 33.333 | 288 | 173 | 8 | 8 | 294 | 354 | 623 | 9.36e-29 | 117 |
| MS.gene61746.t1 | AT2G23140 | 33.333 | 288 | 173 | 8 | 8 | 294 | 354 | 623 | 9.36e-29 | 117 |
| MS.gene61746.t1 | AT2G23140 | 33.681 | 288 | 172 | 8 | 8 | 294 | 546 | 815 | 2.29e-28 | 116 |
| MS.gene61746.t1 | AT2G23140 | 33.681 | 288 | 172 | 8 | 8 | 294 | 543 | 812 | 2.42e-28 | 116 |
| MS.gene61746.t1 | AT2G23140 | 33.681 | 288 | 172 | 8 | 8 | 294 | 543 | 812 | 2.42e-28 | 116 |
| MS.gene61746.t1 | AT1G23030 | 33.106 | 293 | 177 | 9 | 7 | 297 | 332 | 607 | 6.10e-28 | 114 |
| MS.gene61746.t1 | AT1G29340 | 31.818 | 330 | 204 | 9 | 1 | 327 | 401 | 712 | 1.24e-26 | 111 |
| MS.gene61746.t1 | AT5G67340 | 30.584 | 291 | 184 | 8 | 8 | 297 | 423 | 696 | 5.86e-22 | 97.4 |
| MS.gene61746.t1 | AT5G67340 | 30.584 | 291 | 184 | 8 | 8 | 297 | 423 | 696 | 5.86e-22 | 97.4 |
| MS.gene61746.t1 | AT1G71020 | 31.023 | 303 | 189 | 10 | 8 | 307 | 195 | 480 | 1.62e-21 | 95.5 |
| MS.gene61746.t1 | AT1G71020 | 31.023 | 303 | 189 | 10 | 8 | 307 | 343 | 628 | 2.62e-21 | 95.5 |
| MS.gene61746.t1 | AT3G46510 | 30.233 | 301 | 174 | 11 | 12 | 294 | 342 | 624 | 4.53e-20 | 91.7 |
| MS.gene61746.t1 | AT3G54850 | 30.872 | 298 | 186 | 10 | 2 | 297 | 341 | 620 | 4.53e-20 | 91.7 |
| MS.gene61746.t1 | AT2G28830 | 29.054 | 296 | 190 | 10 | 2 | 294 | 279 | 557 | 1.19e-19 | 90.5 |
| MS.gene61746.t1 | AT3G54790 | 29.825 | 285 | 182 | 7 | 11 | 294 | 441 | 708 | 3.20e-18 | 86.3 |
| MS.gene61746.t1 | AT3G54790 | 29.825 | 285 | 182 | 7 | 11 | 294 | 477 | 744 | 3.79e-18 | 85.9 |
| MS.gene61746.t1 | AT3G54790 | 29.825 | 285 | 182 | 7 | 11 | 294 | 477 | 744 | 3.79e-18 | 85.9 |
| MS.gene61746.t1 | AT5G01830 | 31.392 | 309 | 170 | 13 | 1 | 297 | 365 | 643 | 2.80e-16 | 80.5 |
| MS.gene61746.t1 | AT5G42340 | 29.553 | 291 | 187 | 9 | 8 | 297 | 381 | 654 | 2.98e-16 | 80.1 |
| MS.gene61746.t1 | AT5G65200 | 28.698 | 338 | 190 | 14 | 11 | 320 | 229 | 543 | 2.25e-15 | 77.4 |
| MS.gene61746.t1 | AT3G01400 | 30.068 | 296 | 181 | 13 | 7 | 295 | 63 | 339 | 9.17e-14 | 72.0 |
| MS.gene61746.t1 | AT1G10560 | 25.828 | 302 | 204 | 10 | 3 | 297 | 385 | 673 | 2.03e-12 | 68.6 |
| MS.gene61746.t1 | AT1G60190 | 25.246 | 305 | 207 | 11 | 2 | 297 | 370 | 662 | 2.23e-12 | 68.6 |
| MS.gene61746.t1 | AT5G58680 | 29.389 | 262 | 166 | 10 | 1 | 259 | 55 | 300 | 2.42e-11 | 64.7 |
| MS.gene61746.t1 | AT4G21350 | 30.403 | 273 | 167 | 9 | 7 | 274 | 97 | 351 | 2.55e-11 | 64.7 |
| MS.gene61746.t1 | AT5G62560 | 26.429 | 280 | 179 | 11 | 25 | 297 | 253 | 512 | 2.83e-11 | 65.1 |
Find 83 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGGCGTTTAAGAAGGTTTC+TGG | 0.219872 | 8.4:-58674173 | MS.gene61746:CDS |
| TGCGCCTGATTCGGCTATTA+TGG | 0.221489 | 8.4:+58675295 | None:intergenic |
| GCTATTATGGGTCGGGTTGA+TGG | 0.308712 | 8.4:+58675308 | None:intergenic |
| ACATCTCTGATTCAGGTTGC+TGG | 0.314487 | 8.4:-58674212 | MS.gene61746:intron |
| AAGGGTGTAAAGATGAATAA+AGG | 0.319486 | 8.4:+58675252 | None:intergenic |
| CTCGATGAGTGATTCGATTC+GGG | 0.324566 | 8.4:+58675355 | None:intergenic |
| GCGCCTGATTCGGCTATTAT+GGG | 0.332670 | 8.4:+58675296 | None:intergenic |
| ATTGCTGATGTTAAAGATAA+AGG | 0.343931 | 8.4:-58673993 | MS.gene61746:CDS |
| TTTCGTCGGTGGATGATTAT+CGG | 0.349847 | 8.4:-58675061 | MS.gene61746:CDS |
| TTGAATAGTGATTCGTCGTT+TGG | 0.355196 | 8.4:-58673855 | MS.gene61746:CDS |
| GGTTCAGTTTGGTGTTGTTC+CGG | 0.382972 | 8.4:-58674895 | MS.gene61746:CDS |
| AAAGATAAAGGAAGTGTTAA+GGG | 0.391288 | 8.4:-58673981 | MS.gene61746:CDS |
| GTAAGGAATTGCGCCTGATT+CGG | 0.391749 | 8.4:+58675286 | None:intergenic |
| GGATTGAACAGCGGCGGCGG+CGG | 0.408949 | 8.4:+58675109 | None:intergenic |
| GGCGGATTGAACAGCGGCGG+CGG | 0.409584 | 8.4:+58675106 | None:intergenic |
| TTTAAGAAGGTTTCTGGTGT+TGG | 0.413108 | 8.4:-58674167 | MS.gene61746:CDS |
| TAAAGATAAAGGAAGTGTTA+AGG | 0.422699 | 8.4:-58673982 | MS.gene61746:CDS |
| CGCGGTGGCGTTTGGTGCGA+TGG | 0.437208 | 8.4:-58674021 | MS.gene61746:CDS |
| AACGAATCTTTCACCGTCCT+AGG | 0.438329 | 8.4:+58674966 | None:intergenic |
| GCTCGATGAGTGATTCGATT+CGG | 0.440076 | 8.4:+58675354 | None:intergenic |
| ACACCGCGCGTGGACATGAT+AGG | 0.441940 | 8.4:+58675176 | None:intergenic |
| AATCATCCACCGACGAAAGA+AGG | 0.447664 | 8.4:+58675066 | None:intergenic |
| GTAAGAGACGCGGTGGCGTT+TGG | 0.449671 | 8.4:-58674029 | MS.gene61746:CDS |
| CGACCCATAATAGCCGAATC+AGG | 0.450618 | 8.4:-58675299 | MS.gene61746:CDS |
| TTGCTACTGGTTCGAGTATG+AGG | 0.451497 | 8.4:-58674121 | MS.gene61746:CDS |
| GGTTTCTGGTGTTGGAGTGC+TGG | 0.453944 | 8.4:-58674159 | MS.gene61746:CDS |
| GATGATTATCGGACTGTTGT+TGG | 0.454158 | 8.4:-58675050 | MS.gene61746:CDS |
| AAGTGTTAAGGGGCAGAGTA+AGG | 0.459646 | 8.4:-58673970 | MS.gene61746:CDS |
| AAGTGTTGAGGCGTTTAAGA+AGG | 0.460925 | 8.4:-58674180 | MS.gene61746:CDS |
| TTGAACAGCGGCGGCGGCGG+AGG | 0.468848 | 8.4:+58675112 | None:intergenic |
| ATTGTTAATGATGGTAGAGT+AGG | 0.470952 | 8.4:-58674858 | MS.gene61746:CDS |
| TGATTCGGCTATTATGGGTC+GGG | 0.485936 | 8.4:+58675301 | None:intergenic |
| CTGATTCGGCTATTATGGGT+CGG | 0.492707 | 8.4:+58675300 | None:intergenic |
| TTGTTAATGATGGTAGAGTA+GGG | 0.494346 | 8.4:-58674857 | MS.gene61746:CDS |
| TGCTTCCGCGGTTATTGCGC+AGG | 0.502926 | 8.4:-58674823 | MS.gene61746:intron |
| CGTGCTACGATGGTTCAGTT+TGG | 0.504494 | 8.4:-58674906 | MS.gene61746:CDS |
| GTGGCGTTTGGTGCGATGGA+TGG | 0.506730 | 8.4:-58674017 | MS.gene61746:CDS |
| CTGGTTCGAGTATGAGGACG+AGG | 0.510558 | 8.4:-58674115 | MS.gene61746:CDS |
| GTTCGTAGTCACGGTAATGT+TGG | 0.512410 | 8.4:-58673879 | MS.gene61746:CDS |
| AGGGTGTAAAGATGAATAAA+GGG | 0.516148 | 8.4:+58675253 | None:intergenic |
| ACGCAAACCGCCGCGTCGTA+CGG | 0.526299 | 8.4:-58675415 | MS.gene61746:CDS |
| TCCGTTGAATCGTGCTACGA+TGG | 0.531126 | 8.4:-58674916 | MS.gene61746:CDS |
| TCTTTCATGAATGAAGATAG+TGG | 0.538879 | 8.4:-58673831 | MS.gene61746:CDS |
| TCACAGCCTTCTTTCGTCGG+TGG | 0.538956 | 8.4:-58675072 | MS.gene61746:CDS |
| TAAAGGGTTTCAGCGAGGTA+AGG | 0.539730 | 8.4:+58675269 | None:intergenic |
| GACGAGGGAAAATGCGGTGT+CGG | 0.541817 | 8.4:-58674099 | MS.gene61746:CDS |
| CACGGTGATGTTCGTAGTGA+TGG | 0.549767 | 8.4:-58673906 | MS.gene61746:CDS |
| GATTCACAGCCTTCTTTCGT+CGG | 0.551912 | 8.4:-58675075 | MS.gene61746:CDS |
| GATTCAGGTTGCTGGTTGCG+AGG | 0.557678 | 8.4:-58674204 | MS.gene61746:intron |
| CGCGTCGAGAACACCGCGCG+TGG | 0.558608 | 8.4:+58675166 | None:intergenic |
| TGTGAGATGTGGTGGAGATG+TGG | 0.560397 | 8.4:-58674063 | MS.gene61746:CDS |
| ACCATCGTAGCACGATTCAA+CGG | 0.561289 | 8.4:+58674915 | None:intergenic |
| CTTAATCTTGTGAGATGTGG+TGG | 0.564928 | 8.4:-58674071 | MS.gene61746:CDS |
| TTGCTTAATCTTGTGAGATG+TGG | 0.567457 | 8.4:-58674074 | MS.gene61746:CDS |
| GATCTACTAGATCTTGCTAC+TGG | 0.569155 | 8.4:-58674134 | MS.gene61746:CDS |
| GCTGTGAATCGTAGCGGCGG+CGG | 0.577574 | 8.4:+58675088 | None:intergenic |
| CCGTCCTAGGCGGTGAAGAA+CGG | 0.579334 | 8.4:+58674979 | None:intergenic |
| GGAAAGGTTTAAAAGTGTTG+CGG | 0.581602 | 8.4:+58675214 | None:intergenic |
| GTCACCGTTCTTCACCGCCT+AGG | 0.589077 | 8.4:-58674983 | MS.gene61746:CDS |
| GAGTTGATGAGAGTGATGGT+TGG | 0.595956 | 8.4:-58673942 | MS.gene61746:CDS |
| GGCGGCGGATTGAACAGCGG+CGG | 0.598501 | 8.4:+58675103 | None:intergenic |
| GTTGGTGATGTTCGTAGTCA+CGG | 0.603776 | 8.4:-58673924 | MS.gene61746:CDS |
| TTCTGGTGTTGGAGTGCTGG+CGG | 0.604498 | 8.4:-58674156 | MS.gene61746:CDS |
| AAGATAAAGGAAGTGTTAAG+GGG | 0.604994 | 8.4:-58673980 | MS.gene61746:CDS |
| GAGATGTGGTGGAGATGTGG+TGG | 0.610433 | 8.4:-58674060 | MS.gene61746:CDS |
| TATGAGGACGAGGGAAAATG+CGG | 0.612956 | 8.4:-58674105 | MS.gene61746:CDS |
| CCGTTCTTCACCGCCTAGGA+CGG | 0.615036 | 8.4:-58674979 | MS.gene61746:CDS |
| GATGGTGATGTTCGTAGTCA+CGG | 0.622057 | 8.4:-58673888 | MS.gene61746:CDS |
| GATTGTTGAAGATGCTTCCG+CGG | 0.638020 | 8.4:-58674835 | MS.gene61746:CDS |
| AATAACCTGCGCAATAACCG+CGG | 0.661300 | 8.4:+58674818 | None:intergenic |
| GAATCTTTCACCGTCCTAGG+CGG | 0.666090 | 8.4:+58674969 | None:intergenic |
| AAGGCTGTGAATCGTAGCGG+CGG | 0.667512 | 8.4:+58675085 | None:intergenic |
| AGCGGCGGCGGATTGAACAG+CGG | 0.667946 | 8.4:+58675100 | None:intergenic |
| TGGTTGCGAGGAAAGTGTTG+AGG | 0.674105 | 8.4:-58674192 | MS.gene61746:CDS |
| TGAAGATGTAAGAGACGCGG+TGG | 0.675343 | 8.4:-58674036 | MS.gene61746:CDS |
| ACAATCAACGAAAACAACGC+CGG | 0.685893 | 8.4:+58674876 | None:intergenic |
| ATGAATAAAGGGTTTCAGCG+AGG | 0.686647 | 8.4:+58675264 | None:intergenic |
| GAACCTATCATGTCCACGCG+CGG | 0.689698 | 8.4:-58675179 | MS.gene61746:CDS |
| AAGAAGGCTGTGAATCGTAG+CGG | 0.707499 | 8.4:+58675082 | None:intergenic |
| TGGTTCGAGTATGAGGACGA+GGG | 0.725606 | 8.4:-58674114 | MS.gene61746:CDS |
| GGCTGAAGATGTAAGAGACG+CGG | 0.742618 | 8.4:-58674039 | MS.gene61746:CDS |
| ATACTAGCGTCCGTACGACG+CGG | 0.744968 | 8.4:+58675405 | None:intergenic |
| CTAGCGTCCGTACGACGCGG+CGG | 0.773744 | 8.4:+58675408 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAAGTTGAATTAAATTAA+GGG | - | chr8.4:58674490-58674509 | MS.gene61746:intron | 15.0% |
| !! | CTATCTTATTATATTACTTA+GGG | + | chr8.4:58674952-58674971 | None:intergenic | 15.0% |
| !!! | TAAGAGTTAATTATTTTAAC+TGG | + | chr8.4:58674975-58674994 | None:intergenic | 15.0% |
| !! | GAAGAAGTTGAATTAAATTA+AGG | - | chr8.4:58674489-58674508 | MS.gene61746:intron | 20.0% |
| !! | GCTATCTTATTATATTACTT+AGG | + | chr8.4:58674953-58674972 | None:intergenic | 20.0% |
| !! | TATTCATAAGTTATGAAACA+CGG | + | chr8.4:58674805-58674824 | None:intergenic | 20.0% |
| ! | AAGTAATACAATGTGATAGT+CGG | - | chr8.4:58674901-58674920 | MS.gene61746:CDS | 25.0% |
| ! | ACTATCACATTGTATTACTT+GGG | + | chr8.4:58674901-58674920 | None:intergenic | 25.0% |
| ! | ATTGCTGATGTTAAAGATAA+AGG | - | chr8.4:58675244-58675263 | MS.gene61746:CDS | 25.0% |
| ! | TAGAACAACTAACTCTTAAA+CGG | - | chr8.4:58674925-58674944 | MS.gene61746:CDS | 25.0% |
| ! | TTCTGTGTAATTATATGTGT+CGG | - | chr8.4:58674713-58674732 | MS.gene61746:intron | 25.0% |
| !!! | AAAGATAAAGGAAGTGTTAA+GGG | - | chr8.4:58675256-58675275 | MS.gene61746:CDS | 25.0% |
| !!! | TAAAGATAAAGGAAGTGTTA+AGG | - | chr8.4:58675255-58675274 | MS.gene61746:CDS | 25.0% |
| !!! | TTTTCGTTGATTGTTAATGA+TGG | - | chr8.4:58674370-58674389 | MS.gene61746:intron | 25.0% |
| AGAACAACTAACTCTTAAAC+GGG | - | chr8.4:58674926-58674945 | MS.gene61746:CDS | 30.0% | |
| AGGGTGTAAAGATGAATAAA+GGG | + | chr8.4:58673987-58674006 | None:intergenic | 30.0% | |
| ATTGTTAATGATGGTAGAGT+AGG | - | chr8.4:58674379-58674398 | MS.gene61746:intron | 30.0% | |
| CTATCACATTGTATTACTTG+GGG | + | chr8.4:58674900-58674919 | None:intergenic | 30.0% | |
| CTTCAAATTATTAGCAGTGT+CGG | + | chr8.4:58674682-58674701 | None:intergenic | 30.0% | |
| GACTATCACATTGTATTACT+TGG | + | chr8.4:58674902-58674921 | None:intergenic | 30.0% | |
| TAAACTGTTATGCTTAAGCT+CGG | - | chr8.4:58674846-58674865 | MS.gene61746:CDS | 30.0% | |
| TCTTTCATGAATGAAGATAG+TGG | - | chr8.4:58675406-58675425 | MS.gene61746:CDS | 30.0% | |
| TTGTTAATGATGGTAGAGTA+GGG | - | chr8.4:58674380-58674399 | MS.gene61746:intron | 30.0% | |
| ! | AACTTTTACATCTCTGATTC+AGG | - | chr8.4:58675018-58675037 | MS.gene61746:CDS | 30.0% |
| ! | AAGGGTGTAAAGATGAATAA+AGG | + | chr8.4:58673988-58674007 | None:intergenic | 30.0% |
| ! | GATAGGTTCTTTTTCTGTTA+TGG | + | chr8.4:58674047-58674066 | None:intergenic | 30.0% |
| ! | GTTCTTTTTCTGTTATGGAA+AGG | + | chr8.4:58674042-58674061 | None:intergenic | 30.0% |
| ! | TTTCATAAACTAGCTTGACA+AGG | - | chr8.4:58674602-58674621 | MS.gene61746:intron | 30.0% |
| !! | AAGATAAAGGAAGTGTTAAG+GGG | - | chr8.4:58675257-58675276 | MS.gene61746:CDS | 30.0% |
| AAGATTAGACGTCACATTGT+CGG | + | chr8.4:58674774-58674793 | None:intergenic | 35.0% | |
| ACAATGTGACGTCTAATCTT+AGG | - | chr8.4:58674774-58674793 | MS.gene61746:intron | 35.0% | |
| ATTGTATTACTTGGGGCTTA+GGG | + | chr8.4:58674893-58674912 | None:intergenic | 35.0% | |
| TTGAATAGTGATTCGTCGTT+TGG | - | chr8.4:58675382-58675401 | MS.gene61746:CDS | 35.0% | |
| TTGCTTAATCTTGTGAGATG+TGG | - | chr8.4:58675163-58675182 | MS.gene61746:CDS | 35.0% | |
| !! | GGAAAGGTTTAAAAGTGTTG+CGG | + | chr8.4:58674026-58674045 | None:intergenic | 35.0% |
| !! | TTTAAGAAGGTTTCTGGTGT+TGG | - | chr8.4:58675070-58675089 | MS.gene61746:CDS | 35.0% |
| !!! | GATTCGGGTTTTTTCTGAAA+CGG | + | chr8.4:58673870-58673889 | None:intergenic | 35.0% |
| !!! | TTTTGAGTTGATGAGAGTGA+TGG | - | chr8.4:58675291-58675310 | MS.gene61746:CDS | 35.0% |
| AAGGTTATGAAGCACGGATA+CGG | - | chr8.4:58674621-58674640 | MS.gene61746:intron | 40.0% | |
| ACAATCAACGAAAACAACGC+CGG | + | chr8.4:58674364-58674383 | None:intergenic | 40.0% | |
| ATGAATAAAGGGTTTCAGCG+AGG | + | chr8.4:58673976-58673995 | None:intergenic | 40.0% | |
| CATTGTATTACTTGGGGCTT+AGG | + | chr8.4:58674894-58674913 | None:intergenic | 40.0% | |
| CTTAATCTTGTGAGATGTGG+TGG | - | chr8.4:58675166-58675185 | MS.gene61746:CDS | 40.0% | |
| CTTGACAAGGTTATGAAGCA+CGG | - | chr8.4:58674615-58674634 | MS.gene61746:intron | 40.0% | |
| GATCTACTAGATCTTGCTAC+TGG | - | chr8.4:58675103-58675122 | MS.gene61746:CDS | 40.0% | |
| GATGATTATCGGACTGTTGT+TGG | - | chr8.4:58674187-58674206 | MS.gene61746:CDS | 40.0% | |
| TTTCGTCGGTGGATGATTAT+CGG | - | chr8.4:58674176-58674195 | MS.gene61746:CDS | 40.0% | |
| !! | AAGTGTTGAGGCGTTTAAGA+AGG | - | chr8.4:58675057-58675076 | MS.gene61746:CDS | 40.0% |
| AACGAATCTTTCACCGTCCT+AGG | + | chr8.4:58674274-58674293 | None:intergenic | 45.0% | |
| AAGAAGGCTGTGAATCGTAG+CGG | + | chr8.4:58674158-58674177 | None:intergenic | 45.0% | |
| AAGTGTTAAGGGGCAGAGTA+AGG | - | chr8.4:58675267-58675286 | MS.gene61746:CDS | 45.0% | |
| AATAACCTGCGCAATAACCG+CGG | + | chr8.4:58674422-58674441 | None:intergenic | 45.0% | |
| AATCATCCACCGACGAAAGA+AGG | + | chr8.4:58674174-58674193 | None:intergenic | 45.0% | |
| ACCATCGTAGCACGATTCAA+CGG | + | chr8.4:58674325-58674344 | None:intergenic | 45.0% | |
| CTCGATGAGTGATTCGATTC+GGG | + | chr8.4:58673885-58673904 | None:intergenic | 45.0% | |
| GATTCACAGCCTTCTTTCGT+CGG | - | chr8.4:58674162-58674181 | MS.gene61746:CDS | 45.0% | |
| GATTGTTGAAGATGCTTCCG+CGG | - | chr8.4:58674402-58674421 | MS.gene61746:intron | 45.0% | |
| GCTCGATGAGTGATTCGATT+CGG | + | chr8.4:58673886-58673905 | None:intergenic | 45.0% | |
| GTAAGGAATTGCGCCTGATT+CGG | + | chr8.4:58673954-58673973 | None:intergenic | 45.0% | |
| GTTCGTAGTCACGGTAATGT+TGG | - | chr8.4:58675358-58675377 | MS.gene61746:CDS | 45.0% | |
| TAAAGGGTTTCAGCGAGGTA+AGG | + | chr8.4:58673971-58673990 | None:intergenic | 45.0% | |
| TATGAGGACGAGGGAAAATG+CGG | - | chr8.4:58675132-58675151 | MS.gene61746:CDS | 45.0% | |
| ! | CGGTAGCGTTTTCTTGAGAA+GGG | + | chr8.4:58674006-58674025 | None:intergenic | 45.0% |
| ! | GAGGCGTTTAAGAAGGTTTC+TGG | - | chr8.4:58675064-58675083 | MS.gene61746:CDS | 45.0% |
| ! | GATGGTGATGTTCGTAGTCA+CGG | - | chr8.4:58675349-58675368 | MS.gene61746:CDS | 45.0% |
| ! | TGATTCGGCTATTATGGGTC+GGG | + | chr8.4:58673939-58673958 | None:intergenic | 45.0% |
| !! | ACATCTCTGATTCAGGTTGC+TGG | - | chr8.4:58675025-58675044 | MS.gene61746:CDS | 45.0% |
| !! | CTGATTCGGCTATTATGGGT+CGG | + | chr8.4:58673940-58673959 | None:intergenic | 45.0% |
| !! | GAGTTGATGAGAGTGATGGT+TGG | - | chr8.4:58675295-58675314 | MS.gene61746:CDS | 45.0% |
| !! | GGTTCAGTTTGGTGTTGTTC+CGG | - | chr8.4:58674342-58674361 | MS.gene61746:intron | 45.0% |
| !! | GTTGGTGATGTTCGTAGTCA+CGG | - | chr8.4:58675313-58675332 | MS.gene61746:CDS | 45.0% |
| !! | TTGCTACTGGTTCGAGTATG+AGG | - | chr8.4:58675116-58675135 | MS.gene61746:CDS | 45.0% |
| ATGAAGCACGGATACGGACA+TGG | - | chr8.4:58674627-58674646 | MS.gene61746:intron | 50.0% | |
| CACGGTGATGTTCGTAGTGA+TGG | - | chr8.4:58675331-58675350 | MS.gene61746:CDS | 50.0% | |
| CGACCCATAATAGCCGAATC+AGG | - | chr8.4:58673938-58673957 | MS.gene61746:CDS | 50.0% | |
| CGTGCTACGATGGTTCAGTT+TGG | - | chr8.4:58674331-58674350 | MS.gene61746:intron | 50.0% | |
| GAATCTTTCACCGTCCTAGG+CGG | + | chr8.4:58674271-58674290 | None:intergenic | 50.0% | |
| GGCTGAAGATGTAAGAGACG+CGG | - | chr8.4:58675198-58675217 | MS.gene61746:CDS | 50.0% | |
| TCCGTTGAATCGTGCTACGA+TGG | - | chr8.4:58674321-58674340 | MS.gene61746:intron | 50.0% | |
| TGAAGATGTAAGAGACGCGG+TGG | - | chr8.4:58675201-58675220 | MS.gene61746:CDS | 50.0% | |
| TGGTTCGAGTATGAGGACGA+GGG | - | chr8.4:58675123-58675142 | MS.gene61746:CDS | 50.0% | |
| ! | GCGGTAGCGTTTTCTTGAGA+AGG | + | chr8.4:58674007-58674026 | None:intergenic | 50.0% |
| ! | TGTGAGATGTGGTGGAGATG+TGG | - | chr8.4:58675174-58675193 | MS.gene61746:CDS | 50.0% |
| !! | GCGCCTGATTCGGCTATTAT+GGG | + | chr8.4:58673944-58673963 | None:intergenic | 50.0% |
| !! | GCTATTATGGGTCGGGTTGA+TGG | + | chr8.4:58673932-58673951 | None:intergenic | 50.0% |
| !! | TGCGCCTGATTCGGCTATTA+TGG | + | chr8.4:58673945-58673964 | None:intergenic | 50.0% |
| !! | TGGTTGCGAGGAAAGTGTTG+AGG | - | chr8.4:58675045-58675064 | MS.gene61746:CDS | 50.0% |
| AAGGCTGTGAATCGTAGCGG+CGG | + | chr8.4:58674155-58674174 | None:intergenic | 55.0% | |
| ACGGATACGGACATGGACAC+CGG | - | chr8.4:58674634-58674653 | MS.gene61746:intron | 55.0% | |
| ATACTAGCGTCCGTACGACG+CGG | + | chr8.4:58673835-58673854 | None:intergenic | 55.0% | |
| CTTGGGGCTTAGGGTCTGTT+TGG | + | chr8.4:58674884-58674903 | None:intergenic | 55.0% | |
| GAACCTATCATGTCCACGCG+CGG | - | chr8.4:58674058-58674077 | MS.gene61746:CDS | 55.0% | |
| GACGAGGGAAAATGCGGTGT+CGG | - | chr8.4:58675138-58675157 | MS.gene61746:CDS | 55.0% | |
| GTCAGTGTCCATGTCATGCC+CGG | + | chr8.4:58674656-58674675 | None:intergenic | 55.0% | |
| TCACAGCCTTCTTTCGTCGG+TGG | - | chr8.4:58674165-58674184 | MS.gene61746:CDS | 55.0% | |
| ! | CTGGTTCGAGTATGAGGACG+AGG | - | chr8.4:58675122-58675141 | MS.gene61746:CDS | 55.0% |
| ! | GAGATGTGGTGGAGATGTGG+TGG | - | chr8.4:58675177-58675196 | MS.gene61746:CDS | 55.0% |
| !! | GATTCAGGTTGCTGGTTGCG+AGG | - | chr8.4:58675033-58675052 | MS.gene61746:CDS | 55.0% |
| !! | GGTTTCTGGTGTTGGAGTGC+TGG | - | chr8.4:58675078-58675097 | MS.gene61746:CDS | 55.0% |
| !! | TTCTGGTGTTGGAGTGCTGG+CGG | - | chr8.4:58675081-58675100 | MS.gene61746:CDS | 55.0% |
| ACACCGCGCGTGGACATGAT+AGG | + | chr8.4:58674064-58674083 | None:intergenic | 60.0% | |
| CATGGACACCGGGCATGACA+TGG | - | chr8.4:58674645-58674664 | MS.gene61746:intron | 60.0% | |
| CCGTCCTAGGCGGTGAAGAA+CGG | + | chr8.4:58674261-58674280 | None:intergenic | 60.0% | |
| CCGTTCTTCACCGCCTAGGA+CGG | - | chr8.4:58674258-58674277 | MS.gene61746:intron | 60.0% | |
| CGGATACGGACATGGACACC+GGG | - | chr8.4:58674635-58674654 | MS.gene61746:intron | 60.0% | |
| GTAAGAGACGCGGTGGCGTT+TGG | - | chr8.4:58675208-58675227 | MS.gene61746:CDS | 60.0% | |
| GTCACCGTTCTTCACCGCCT+AGG | - | chr8.4:58674254-58674273 | MS.gene61746:intron | 60.0% | |
| TGCTTCCGCGGTTATTGCGC+AGG | - | chr8.4:58674414-58674433 | MS.gene61746:intron | 60.0% | |
| ! | GTGTCGTGTTGCGTCGGTGT+CGG | - | chr8.4:58674735-58674754 | MS.gene61746:intron | 60.0% |
| !! | GTGGCGTTTGGTGCGATGGA+TGG | - | chr8.4:58675220-58675239 | MS.gene61746:CDS | 60.0% |
| !! | GTGTCGGTGTCGTGTTGCGT+CGG | - | chr8.4:58674729-58674748 | MS.gene61746:intron | 60.0% |
| ACGCAAACCGCCGCGTCGTA+CGG | - | chr8.4:58673822-58673841 | MS.gene61746:CDS | 65.0% | |
| GCTGTGAATCGTAGCGGCGG+CGG | + | chr8.4:58674152-58674171 | None:intergenic | 65.0% | |
| !! | AGCGGCGGCGGATTGAACAG+CGG | + | chr8.4:58674140-58674159 | None:intergenic | 65.0% |
| CTAGCGTCCGTACGACGCGG+CGG | + | chr8.4:58673832-58673851 | None:intergenic | 70.0% | |
| GGATTGAACAGCGGCGGCGG+CGG | + | chr8.4:58674131-58674150 | None:intergenic | 70.0% | |
| !! | CGCGGTGGCGTTTGGTGCGA+TGG | - | chr8.4:58675216-58675235 | MS.gene61746:CDS | 70.0% |
| !! | GGCGGATTGAACAGCGGCGG+CGG | + | chr8.4:58674134-58674153 | None:intergenic | 70.0% |
| !! | GGCGGCGGATTGAACAGCGG+CGG | + | chr8.4:58674137-58674156 | None:intergenic | 70.0% |
| CGCGTCGAGAACACCGCGCG+TGG | + | chr8.4:58674074-58674093 | None:intergenic | 75.0% | |
| TTGAACAGCGGCGGCGGCGG+AGG | + | chr8.4:58674128-58674147 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 58673818 | 58675441 | 58673818 | ID=MS.gene61746 |
| chr8.4 | mRNA | 58673818 | 58675441 | 58673818 | ID=MS.gene61746.t1;Parent=MS.gene61746 |
| chr8.4 | exon | 58674824 | 58675441 | 58674824 | ID=MS.gene61746.t1.exon1;Parent=MS.gene61746.t1 |
| chr8.4 | CDS | 58674824 | 58675441 | 58674824 | ID=cds.MS.gene61746.t1;Parent=MS.gene61746.t1 |
| chr8.4 | exon | 58673818 | 58674219 | 58673818 | ID=MS.gene61746.t1.exon2;Parent=MS.gene61746.t1 |
| chr8.4 | CDS | 58673818 | 58674219 | 58673818 | ID=cds.MS.gene61746.t1;Parent=MS.gene61746.t1 |
| Gene Sequence |
| Protein sequence |
