Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62159.t1 | XP_003600780.1 | 96.6 | 562 | 19 | 0 | 1 | 562 | 1 | 562 | 0.00E+00 | 1102.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62159.t1 | Q39033 | 67.5 | 572 | 163 | 7 | 2 | 562 | 12 | 571 | 1.9e-226 | 786.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62159.t1 | G7JA07 | 96.6 | 562 | 19 | 0 | 1 | 562 | 1 | 562 | 0.0e+00 | 1102.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050426 | MS.gene62159 | -0.806466 | 8.12E-50 | -1.69E-46 |
| MS.gene052188 | MS.gene62159 | 0.811967 | 5.37E-51 | -1.69E-46 |
| MS.gene052340 | MS.gene62159 | 0.811908 | 5.53E-51 | -1.69E-46 |
| MS.gene054349 | MS.gene62159 | 0.816588 | 5.12E-52 | -1.69E-46 |
| MS.gene05553 | MS.gene62159 | 0.828386 | 9.25E-55 | -1.69E-46 |
| MS.gene056659 | MS.gene62159 | 0.825333 | 4.96E-54 | -1.69E-46 |
| MS.gene057749 | MS.gene62159 | 0.843091 | 1.73E-58 | -1.69E-46 |
| MS.gene057823 | MS.gene62159 | 0.847453 | 1.15E-59 | -1.69E-46 |
| MS.gene058710 | MS.gene62159 | 0.809204 | 2.12E-50 | -1.69E-46 |
| MS.gene058928 | MS.gene62159 | 0.817359 | 3.43E-52 | -1.69E-46 |
| MS.gene059285 | MS.gene62159 | 0.817764 | 2.78E-52 | -1.69E-46 |
| MS.gene059420 | MS.gene62159 | 0.818851 | 1.58E-52 | -1.69E-46 |
| MS.gene060407 | MS.gene62159 | 0.814589 | 1.43E-51 | -1.69E-46 |
| MS.gene061049 | MS.gene62159 | 0.804934 | 1.70E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene068784 | MS.gene62159 | PPI |
| MS.gene69296 | MS.gene62159 | PPI |
| MS.gene008126 | MS.gene62159 | PPI |
| MS.gene69222 | MS.gene62159 | PPI |
| MS.gene059849 | MS.gene62159 | PPI |
| MS.gene065186 | MS.gene62159 | PPI |
| MS.gene008055 | MS.gene62159 | PPI |
| MS.gene057347 | MS.gene62159 | PPI |
| MS.gene62159 | MS.gene031403 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62159.t1 | MTR_3g069280 | 97.865 | 562 | 12 | 0 | 1 | 562 | 1 | 562 | 0.0 | 1139 |
| MS.gene62159.t1 | MTR_3g070720 | 91.624 | 585 | 24 | 3 | 1 | 562 | 1 | 583 | 0.0 | 1000 |
| MS.gene62159.t1 | MTR_5g082620 | 74.513 | 565 | 133 | 5 | 7 | 562 | 17 | 579 | 0.0 | 869 |
| MS.gene62159.t1 | MTR_3g070720 | 91.383 | 499 | 18 | 3 | 1 | 476 | 1 | 497 | 0.0 | 828 |
| MS.gene62159.t1 | MTR_3g070720 | 91.064 | 470 | 17 | 3 | 1 | 447 | 1 | 468 | 0.0 | 765 |
| MS.gene62159.t1 | MTR_5g071010 | 61.140 | 579 | 203 | 6 | 2 | 562 | 10 | 584 | 0.0 | 719 |
| MS.gene62159.t1 | MTR_5g082590 | 59.646 | 565 | 195 | 8 | 14 | 559 | 19 | 569 | 0.0 | 672 |
| MS.gene62159.t1 | MTR_3g070720 | 90.431 | 418 | 15 | 3 | 1 | 395 | 1 | 416 | 0.0 | 658 |
| MS.gene62159.t1 | MTR_5g082580 | 49.746 | 591 | 251 | 10 | 6 | 562 | 19 | 597 | 0.0 | 563 |
| MS.gene62159.t1 | MTR_3g070710 | 50.261 | 575 | 256 | 8 | 6 | 562 | 15 | 577 | 0.0 | 557 |
| MS.gene62159.t1 | MTR_3g070560 | 50.352 | 568 | 254 | 8 | 12 | 562 | 22 | 578 | 0.0 | 552 |
| MS.gene62159.t1 | MTR_5g071040 | 50.436 | 573 | 237 | 10 | 2 | 562 | 26 | 563 | 0.0 | 538 |
| MS.gene62159.t1 | MTR_3g070560 | 53.771 | 411 | 182 | 4 | 152 | 562 | 3 | 405 | 1.37e-152 | 444 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62159.t1 | AT3G08510 | 68.893 | 569 | 160 | 6 | 2 | 562 | 12 | 571 | 0.0 | 807 |
| MS.gene62159.t1 | AT3G08510 | 68.893 | 569 | 160 | 6 | 2 | 562 | 12 | 571 | 0.0 | 807 |
| MS.gene62159.t1 | AT3G55940 | 66.549 | 568 | 172 | 7 | 2 | 559 | 12 | 571 | 0.0 | 755 |
| MS.gene62159.t1 | AT3G08510 | 64.851 | 569 | 154 | 7 | 2 | 562 | 12 | 542 | 0.0 | 735 |
| MS.gene62159.t1 | AT3G08510 | 64.851 | 569 | 154 | 7 | 2 | 562 | 12 | 542 | 0.0 | 735 |
| MS.gene62159.t1 | AT2G40116 | 59.524 | 546 | 191 | 7 | 30 | 559 | 69 | 600 | 0.0 | 653 |
| MS.gene62159.t1 | AT5G58700 | 56.424 | 576 | 226 | 8 | 6 | 562 | 18 | 587 | 0.0 | 641 |
| MS.gene62159.t1 | AT5G58700 | 56.424 | 576 | 226 | 8 | 6 | 562 | 18 | 587 | 0.0 | 641 |
| MS.gene62159.t1 | AT5G58700 | 62.708 | 480 | 172 | 4 | 86 | 562 | 4 | 479 | 0.0 | 614 |
| MS.gene62159.t1 | AT5G58690 | 52.632 | 570 | 219 | 7 | 13 | 559 | 24 | 565 | 0.0 | 594 |
| MS.gene62159.t1 | AT5G58690 | 52.632 | 570 | 219 | 7 | 13 | 559 | 5 | 546 | 0.0 | 594 |
| MS.gene62159.t1 | AT5G58690 | 52.632 | 570 | 219 | 7 | 13 | 559 | 24 | 565 | 0.0 | 594 |
| MS.gene62159.t1 | AT5G58670 | 51.064 | 564 | 230 | 5 | 11 | 562 | 20 | 549 | 0.0 | 553 |
| MS.gene62159.t1 | AT4G38530 | 48.161 | 571 | 251 | 7 | 3 | 562 | 12 | 548 | 0.0 | 526 |
| MS.gene62159.t1 | AT3G47290 | 38.404 | 539 | 262 | 11 | 21 | 557 | 46 | 516 | 4.28e-117 | 357 |
| MS.gene62159.t1 | AT3G47290 | 38.505 | 535 | 259 | 11 | 21 | 553 | 46 | 512 | 5.08e-116 | 356 |
| MS.gene62159.t1 | AT3G47220 | 36.879 | 564 | 271 | 13 | 13 | 557 | 19 | 516 | 3.70e-108 | 334 |
Find 135 sgRNAs with CRISPR-Local
Find 249 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAATTATAATCCATTAAT+TGG | 0.072901 | 3.3:-60763762 | MS.gene62159:CDS |
| ATAATAGTTGGTTGCCTTCT+TGG | 0.178944 | 3.3:-60762602 | MS.gene62159:CDS |
| AGGATCGAAAACCTCATTAT+TGG | 0.216160 | 3.3:+60763340 | None:intergenic |
| CAAATGTTTGACGTCTATTA+AGG | 0.230837 | 3.3:-60765031 | MS.gene62159:CDS |
| CCATGCATCCACCCAATTAA+TGG | 0.240859 | 3.3:+60763750 | None:intergenic |
| TAATTAGGTCACTGTATATA+TGG | 0.245203 | 3.3:-60763164 | MS.gene62159:intron |
| TGGTTCTTTGGCAGGGTTAT+GGG | 0.259926 | 3.3:-60763451 | MS.gene62159:intron |
| TGTAGTCATCTGATGCATTT+TGG | 0.262746 | 3.3:+60764404 | None:intergenic |
| GTGGTTCTTTGGCAGGGTTA+TGG | 0.264327 | 3.3:-60763452 | MS.gene62159:intron |
| CTTAGACGTCTCACTTTATC+AGG | 0.266369 | 3.3:+60764316 | None:intergenic |
| CCCGCTTTCTGTTCCGGAGC+TGG | 0.275180 | 3.3:-60762562 | MS.gene62159:CDS |
| TTTGATGGCAAATGAGCTTT+AGG | 0.277773 | 3.3:+60763320 | None:intergenic |
| CTTATGCAGGTTGGAATTGC+TGG | 0.289356 | 3.3:-60762666 | MS.gene62159:intron |
| TGAATTCCCGCTTTCTGTTC+CGG | 0.306917 | 3.3:-60762568 | MS.gene62159:CDS |
| AGGGTTATGGGAGATCTCTT+TGG | 0.311117 | 3.3:-60763439 | MS.gene62159:CDS |
| GGATCGAAAACCTCATTATT+GGG | 0.335505 | 3.3:+60763341 | None:intergenic |
| CTCTGAAGTGCTTCGATGAT+GGG | 0.355533 | 3.3:+60765245 | None:intergenic |
| CTTCGTTGCGTCTGAATATC+CGG | 0.360784 | 3.3:-60765001 | MS.gene62159:CDS |
| CCACCTTACTCCTGATCTTC+AGG | 0.370917 | 3.3:-60764959 | MS.gene62159:CDS |
| GGTCATAATTCATATCTAAC+TGG | 0.373291 | 3.3:-60765299 | MS.gene62159:CDS |
| TAGATGGTTACTCAAACATT+TGG | 0.373406 | 3.3:-60764813 | MS.gene62159:CDS |
| ATGTCTGAGAAGGATGATTT+TGG | 0.381957 | 3.3:-60762507 | MS.gene62159:CDS |
| TATATGGCCTAATGACTCTA+AGG | 0.383342 | 3.3:-60765198 | MS.gene62159:CDS |
| CATTCCACTATTCCACCTTT+AGG | 0.387588 | 3.3:+60764352 | None:intergenic |
| GCCACTTTGGCCTGAAGATC+AGG | 0.391390 | 3.3:+60764949 | None:intergenic |
| CGCTTAATTGCTATTCATGC+TGG | 0.391854 | 3.3:-60764379 | MS.gene62159:CDS |
| CCTCAGAAGCTTTCTGATTG+AGG | 0.391870 | 3.3:-60766255 | MS.gene62159:CDS |
| GAGTGATTGAATTGGATATA+TGG | 0.394919 | 3.3:-60765214 | MS.gene62159:CDS |
| GGAGGCACCGCCGGAGATAA+AGG | 0.402355 | 3.3:-60766327 | MS.gene62159:CDS |
| TTTAGGTGATGAAGAAGCTT+GGG | 0.407451 | 3.3:-60764637 | MS.gene62159:CDS |
| CGGCGGTGCCTCCGATACGC+TGG | 0.420667 | 3.3:+60766337 | None:intergenic |
| TCTCTGAAGTGCTTCGATGA+TGG | 0.421908 | 3.3:+60765244 | None:intergenic |
| AGGTGTTAGAGTGATTGAAT+TGG | 0.428703 | 3.3:-60765222 | MS.gene62159:CDS |
| TCCTACCTCAGAAACCTTGA+AGG | 0.435352 | 3.3:-60764775 | MS.gene62159:CDS |
| AGATTCCGACGAAGCGGAAA+AGG | 0.438270 | 3.3:-60764431 | MS.gene62159:CDS |
| TCACAGAAGAGAAAGCCTTT+AGG | 0.441642 | 3.3:-60764654 | MS.gene62159:CDS |
| TCTTCTAGTGTTATTACAAC+CGG | 0.444726 | 3.3:+60764982 | None:intergenic |
| CATACCCTTGCATAGAAGTC+TGG | 0.448430 | 3.3:+60763088 | None:intergenic |
| TCTCCTTCGCGGGAATGTAA+TGG | 0.452778 | 3.3:+60762432 | None:intergenic |
| GATGATGTTGATGTCCTTCA+TGG | 0.454017 | 3.3:-60765176 | MS.gene62159:CDS |
| CAAATTATAATCCATTAATT+GGG | 0.455647 | 3.3:-60763761 | MS.gene62159:CDS |
| ATGCGAAGCAGCGCCAGCTC+CGG | 0.456222 | 3.3:+60762549 | None:intergenic |
| CATATGGAAAAGAAATTGTC+AGG | 0.456553 | 3.3:-60764258 | MS.gene62159:intron |
| CCTTGAAGCTAAAGAAGAAA+AGG | 0.464912 | 3.3:-60764688 | MS.gene62159:CDS |
| AAGGTACTCCTTAGGCGGCT+TGG | 0.465613 | 3.3:+60764707 | None:intergenic |
| GAAAAGGCTGCTGAAACATA+TGG | 0.467059 | 3.3:-60764274 | MS.gene62159:CDS |
| CTAACTAACCTGAGCCACTT+TGG | 0.472125 | 3.3:+60764936 | None:intergenic |
| ATAGTACCGCCTCTCAAACT+AGG | 0.474142 | 3.3:+60764603 | None:intergenic |
| GAGGTAATGCGTGTACCTTT+CGG | 0.479808 | 3.3:+60763786 | None:intergenic |
| TACCATCGTTACTCCGATGA+AGG | 0.479952 | 3.3:-60766299 | MS.gene62159:CDS |
| GACGTCAAACATTTGATAAG+TGG | 0.483251 | 3.3:+60765039 | None:intergenic |
| AGCTAAAGAAGAAAAGGAAA+AGG | 0.484145 | 3.3:-60764682 | MS.gene62159:CDS |
| AACAAAACCGCATCCTCCAT+TGG | 0.486065 | 3.3:+60763394 | None:intergenic |
| CCATTAATTGGGTGGATGCA+TGG | 0.487420 | 3.3:-60763750 | MS.gene62159:CDS |
| TCTTCAGGCCAAAGTGGCTC+AGG | 0.489930 | 3.3:-60764944 | MS.gene62159:intron |
| TCACATTATTACATATTCAC+TGG | 0.491218 | 3.3:-60765320 | MS.gene62159:CDS |
| CAAAGTCAACAGATAATAGT+TGG | 0.492685 | 3.3:-60762614 | MS.gene62159:CDS |
| AATTAGGTCACTGTATATAT+GGG | 0.492839 | 3.3:-60763163 | MS.gene62159:intron |
| GATGGTTGCATTTAACATGC+AGG | 0.494100 | 3.3:-60763721 | MS.gene62159:intron |
| CAAGCTTCTTCATCACCTAA+AGG | 0.494465 | 3.3:+60764639 | None:intergenic |
| TTGGTTGCCTTCTTGGAATG+AGG | 0.497276 | 3.3:-60762595 | MS.gene62159:CDS |
| CAGCGTATCGGAGGCACCGC+CGG | 0.501237 | 3.3:-60766336 | MS.gene62159:CDS |
| CTTTAGGTGATGAAGAAGCT+TGG | 0.501759 | 3.3:-60764638 | MS.gene62159:CDS |
| TAAAGAAGAAAAGGAAAAGG+AGG | 0.506940 | 3.3:-60764679 | MS.gene62159:CDS |
| TGTCGATGAAGATGATCTTA+AGG | 0.513054 | 3.3:-60764461 | MS.gene62159:CDS |
| TCCTTCAAGGTTTCTGAGGT+AGG | 0.514356 | 3.3:+60764774 | None:intergenic |
| GAAAACTGGTCCCAATAATG+AGG | 0.515061 | 3.3:-60763351 | MS.gene62159:CDS |
| CGGTACTATAGCTGATTACA+AGG | 0.516593 | 3.3:-60764589 | MS.gene62159:intron |
| GTTGTATTTATCTCCTTCGC+GGG | 0.517351 | 3.3:+60762422 | None:intergenic |
| CAAGGAATGTTTAAAGCCAA+TGG | 0.521167 | 3.3:-60763410 | MS.gene62159:CDS |
| GGCGGTGCCTCCGATACGCT+GGG | 0.521442 | 3.3:+60766338 | None:intergenic |
| AAGATCTCTACGATCAATGA+TGG | 0.522171 | 3.3:+60766193 | None:intergenic |
| AGGTGAAAGAAATTCCTTCA+AGG | 0.523272 | 3.3:+60764761 | None:intergenic |
| GAAGCCTAAAGGTGGAATAG+TGG | 0.523615 | 3.3:-60764356 | MS.gene62159:CDS |
| TTAGCTTCAAGGTACTCCTT+AGG | 0.524662 | 3.3:+60764699 | None:intergenic |
| ATCGTTACTCCGATGAAGGC+GGG | 0.525010 | 3.3:-60766295 | MS.gene62159:CDS |
| TCTGAAGTGCTTCGATGATG+GGG | 0.528251 | 3.3:+60765246 | None:intergenic |
| TGGCCTGAAGATCAGGAGTA+AGG | 0.530572 | 3.3:+60764956 | None:intergenic |
| TGTCATGATCCCGCCTTCAT+CGG | 0.531322 | 3.3:+60766286 | None:intergenic |
| CATATCAACCAAGCCGCCTA+AGG | 0.532591 | 3.3:-60764715 | MS.gene62159:CDS |
| TGTTGTATTTATCTCCTTCG+CGG | 0.535824 | 3.3:+60762421 | None:intergenic |
| ATTATAATCCATTAATTGGG+TGG | 0.536189 | 3.3:-60763758 | MS.gene62159:CDS |
| TGGTAAAGCTCCTTTATCTC+CGG | 0.542445 | 3.3:+60766317 | None:intergenic |
| TTTAAAGCCAATGGAGGATG+CGG | 0.547215 | 3.3:-60763401 | MS.gene62159:CDS |
| ATTCATGCTGGGAAGCCTAA+AGG | 0.548804 | 3.3:-60764367 | MS.gene62159:CDS |
| GCCAGCTCCGGAACAGAAAG+CGG | 0.549635 | 3.3:+60762561 | None:intergenic |
| AAGTGAGTCACAGCTCGAAA+AGG | 0.551984 | 3.3:-60764290 | MS.gene62159:CDS |
| CCAGCTCCGGAACAGAAAGC+GGG | 0.556338 | 3.3:+60762562 | None:intergenic |
| GCTTAATTGCTATTCATGCT+GGG | 0.557069 | 3.3:-60764378 | MS.gene62159:CDS |
| CCTCAATCAGAAAGCTTCTG+AGG | 0.557081 | 3.3:+60766255 | None:intergenic |
| TAGTACCGCCTCTCAAACTA+GGG | 0.558608 | 3.3:+60764604 | None:intergenic |
| TGAAGATGATCTTAAGGAGG+AGG | 0.558834 | 3.3:-60764455 | MS.gene62159:CDS |
| ACAATGGTAAACTCATATCT+TGG | 0.558961 | 3.3:+60765342 | None:intergenic |
| CGGATATTCAGACGCAACGA+AGG | 0.561402 | 3.3:+60765002 | None:intergenic |
| TAATGGATTATAATTTGATG+AGG | 0.561590 | 3.3:+60763767 | None:intergenic |
| GTGGATGCATGGAGCTCAGA+TGG | 0.561990 | 3.3:-60763739 | MS.gene62159:CDS |
| ACCCCAGTGGAAGGTAAAAG+AGG | 0.562878 | 3.3:+60766125 | None:intergenic |
| ACATCATCCTTAGAGTCATT+AGG | 0.562946 | 3.3:+60765191 | None:intergenic |
| TCCTGATCTTCAGGCCAAAG+TGG | 0.568046 | 3.3:-60764950 | MS.gene62159:CDS |
| CCTGTGTGGGAACTAAGAAA+CGG | 0.577952 | 3.3:-60762468 | MS.gene62159:CDS |
| ATCTCCAGACTTCTATGCAA+GGG | 0.579812 | 3.3:-60763092 | MS.gene62159:intron |
| GCTTCAAGGTACTCCTTAGG+CGG | 0.582171 | 3.3:+60764702 | None:intergenic |
| AGATCTCTTTGGTTGATGCA+AGG | 0.584104 | 3.3:-60763428 | MS.gene62159:CDS |
| CATCGTTACTCCGATGAAGG+CGG | 0.584531 | 3.3:-60766296 | MS.gene62159:CDS |
| CTGAAGTGCTTCGATGATGG+GGG | 0.585163 | 3.3:+60765247 | None:intergenic |
| GTCACTGTATATATGGGAGA+AGG | 0.587116 | 3.3:-60763157 | MS.gene62159:CDS |
| TCAAATACCTCATTCCAAGA+AGG | 0.587279 | 3.3:+60762588 | None:intergenic |
| CATCTCCAGACTTCTATGCA+AGG | 0.588070 | 3.3:-60763093 | MS.gene62159:CDS |
| AAATTCCTTCAAGGTTTCTG+AGG | 0.588145 | 3.3:+60764770 | None:intergenic |
| AAACATTTGATAAGTGGCAC+AGG | 0.590787 | 3.3:+60765045 | None:intergenic |
| AAGAGGATTACCCCAGTGGA+AGG | 0.591185 | 3.3:+60766116 | None:intergenic |
| GTTCCATTACATTCCCGCGA+AGG | 0.594715 | 3.3:-60762435 | MS.gene62159:CDS |
| GGTAAACTTACATTCCATGA+AGG | 0.597062 | 3.3:+60765162 | None:intergenic |
| CGCCTTCATCGGAGTAACGA+TGG | 0.598173 | 3.3:+60766297 | None:intergenic |
| TTCTATCTTTAGCAAAACAG+TGG | 0.603639 | 3.3:-60764484 | MS.gene62159:intron |
| CGATGAAGATGATCTTAAGG+AGG | 0.606898 | 3.3:-60764458 | MS.gene62159:CDS |
| AAAGAAGTCCCTAGTTTGAG+AGG | 0.608524 | 3.3:-60764612 | MS.gene62159:CDS |
| AATATGTAATAATGTGACAA+TGG | 0.622860 | 3.3:+60765326 | None:intergenic |
| CCGTTTCTTAGTTCCCACAC+AGG | 0.623175 | 3.3:+60762468 | None:intergenic |
| CTGTATATATGGGAGAAGGA+TGG | 0.631132 | 3.3:-60763153 | MS.gene62159:CDS |
| ACAAACATGCTTACCTGTGT+GGG | 0.631770 | 3.3:-60762481 | MS.gene62159:CDS |
| TAAAGCTCCTTTATCTCCGG+CGG | 0.638010 | 3.3:+60766320 | None:intergenic |
| TGAATATGACATGTCTGAGA+AGG | 0.639315 | 3.3:-60762517 | MS.gene62159:CDS |
| GGAGGAAGATTCCGACGAAG+CGG | 0.646865 | 3.3:-60764437 | MS.gene62159:CDS |
| TTAGGTGATGAAGAAGCTTG+GGG | 0.654802 | 3.3:-60764636 | MS.gene62159:CDS |
| AATAGTGGAATGTCTCAAAG+TGG | 0.664523 | 3.3:-60764341 | MS.gene62159:CDS |
| GACAAACATGCTTACCTGTG+TGG | 0.665048 | 3.3:-60762482 | MS.gene62159:CDS |
| CCAGTGGAAGGTAAAAGAGG+AGG | 0.668421 | 3.3:+60766128 | None:intergenic |
| CCTGAAGATCAGGAGTAAGG+TGG | 0.674793 | 3.3:+60764959 | None:intergenic |
| GGAATGTTTAAAGCCAATGG+AGG | 0.677096 | 3.3:-60763407 | MS.gene62159:CDS |
| CATGCTGGGAAGCCTAAAGG+TGG | 0.677747 | 3.3:-60764364 | MS.gene62159:CDS |
| ATATTGCGAGTGTATCCGAA+AGG | 0.679225 | 3.3:-60763801 | MS.gene62159:CDS |
| GAAGTCCCTAGTTTGAGAGG+CGG | 0.688180 | 3.3:-60764609 | MS.gene62159:CDS |
| GTAAAAGAGGATTACCCCAG+TGG | 0.701192 | 3.3:+60766112 | None:intergenic |
| ATCATCGAAGCACTTCAGAG+AGG | 0.734048 | 3.3:-60765242 | MS.gene62159:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTAGATAAATCAATTT+TGG | + | chr3.3:60763171-60763190 | None:intergenic | 10.0% |
| !! | CAAATTATAATCCATTAATT+GGG | - | chr3.3:60765017-60765036 | MS.gene62159:CDS | 15.0% |
| !! | TCAAATAAAATAATTCATAC+AGG | + | chr3.3:60765740-60765759 | None:intergenic | 15.0% |
| !! | TCAAATTATAATCCATTAAT+TGG | - | chr3.3:60765016-60765035 | MS.gene62159:CDS | 15.0% |
| !! | TGTAACTCATAATATATATT+GGG | - | chr3.3:60762727-60762746 | MS.gene62159:intron | 15.0% |
| !! | TTGTAACTCATAATATATAT+TGG | - | chr3.3:60762726-60762745 | MS.gene62159:intron | 15.0% |
| !! | TTTGATTATGAGTTATTAAA+CGG | + | chr3.3:60764717-60764736 | None:intergenic | 15.0% |
| !!! | ATAATTTTTATGAACTATGT+TGG | - | chr3.3:60763356-60763375 | MS.gene62159:CDS | 15.0% |
| !!! | TAAGATTTAAGATGATTTAT+GGG | - | chr3.3:60765714-60765733 | MS.gene62159:intron | 15.0% |
| !! | AATATGTAATAATGTGACAA+TGG | + | chr3.3:60763455-60763474 | None:intergenic | 20.0% |
| !! | AATGTTGTATATAAATTGCA+AGG | - | chr3.3:60764226-60764245 | MS.gene62159:intron | 20.0% |
| !! | AGACTTGATTATAATTAACA+AGG | - | chr3.3:60765573-60765592 | MS.gene62159:intron | 20.0% |
| !! | GAATTACATTAAATGTAAAG+TGG | + | chr3.3:60762929-60762948 | None:intergenic | 20.0% |
| !! | TATCTCATATTTCTTTAATC+CGG | + | chr3.3:60764644-60764663 | None:intergenic | 20.0% |
| !! | TCAACTCTATAAATTATGTT+TGG | + | chr3.3:60763195-60763214 | None:intergenic | 20.0% |
| !!! | ATGATAAATTATTTTTGCTG+TGG | - | chr3.3:60765303-60765322 | MS.gene62159:CDS | 20.0% |
| !!! | ATTTAATTTAATAGCCAACA+AGG | + | chr3.3:60762691-60762710 | None:intergenic | 20.0% |
| !!! | CTAAGATTTAAGATGATTTA+TGG | - | chr3.3:60765713-60765732 | MS.gene62159:intron | 20.0% |
| !!! | TAATGGATTATAATTTGATG+AGG | + | chr3.3:60765014-60765033 | None:intergenic | 20.0% |
| !!! | TGATAAATTATTTTTGCTGT+GGG | - | chr3.3:60765304-60765323 | MS.gene62159:CDS | 20.0% |
| !!! | TTTTCATAACAGTATCAAAA+GGG | + | chr3.3:60766141-60766160 | None:intergenic | 20.0% |
| !!! | TTTTTCATAACAGTATCAAA+AGG | + | chr3.3:60766142-60766161 | None:intergenic | 20.0% |
| ! | AATAAGTGATAACTTCTCTT+CGG | - | chr3.3:60766056-60766075 | MS.gene62159:intron | 25.0% |
| ! | AATATATGGATGCTATAACT+TGG | + | chr3.3:60765998-60766017 | None:intergenic | 25.0% |
| ! | AATGTAAAGTGGTTTATGTT+TGG | + | chr3.3:60762918-60762937 | None:intergenic | 25.0% |
| ! | AATTAGGTCACTGTATATAT+GGG | - | chr3.3:60765615-60765634 | MS.gene62159:intron | 25.0% |
| ! | ATGAGATAAATATTTGTCCT+TGG | - | chr3.3:60764656-60764675 | MS.gene62159:CDS | 25.0% |
| ! | ATTATAATCCATTAATTGGG+TGG | - | chr3.3:60765020-60765039 | MS.gene62159:CDS | 25.0% |
| ! | CATTTATATTCAATCAGCTT+TGG | - | chr3.3:60764865-60764884 | MS.gene62159:intron | 25.0% |
| ! | GGAAGAGTTTGAAAAATATA+TGG | + | chr3.3:60766012-60766031 | None:intergenic | 25.0% |
| ! | GGCTACTAATTGAAAATTTA+GGG | - | chr3.3:60765140-60765159 | MS.gene62159:intron | 25.0% |
| ! | GTTGTCATTAGTAAAATACA+TGG | + | chr3.3:60763680-60763699 | None:intergenic | 25.0% |
| ! | TAATTAGGTCACTGTATATA+TGG | - | chr3.3:60765614-60765633 | MS.gene62159:intron | 25.0% |
| ! | TAATTGATAAACTCTTATGC+AGG | - | chr3.3:60766099-60766118 | MS.gene62159:intron | 25.0% |
| ! | TCACATTATTACATATTCAC+TGG | - | chr3.3:60763458-60763477 | MS.gene62159:intron | 25.0% |
| ! | TGTTGGAGATATAATTCAAA+CGG | + | chr3.3:60763640-60763659 | None:intergenic | 25.0% |
| ! | TTTAATCCGGTAACAATAAA+AGG | + | chr3.3:60764631-60764650 | None:intergenic | 25.0% |
| ! | TTTCCAACTTGACAAAATAA+CGG | - | chr3.3:60764753-60764772 | MS.gene62159:CDS | 25.0% |
| !! | GTAACCATCTAAAATTTGAA+CGG | + | chr3.3:60763956-60763975 | None:intergenic | 25.0% |
| !! | TAACCATCTAAAATTTGAAC+GGG | + | chr3.3:60763955-60763974 | None:intergenic | 25.0% |
| !! | TAGATAAAGTGATTTGTGTT+TGG | - | chr3.3:60763039-60763058 | MS.gene62159:intron | 25.0% |
| !! | TATAATTTTACCTGTTGCAT+TGG | - | chr3.3:60764592-60764611 | MS.gene62159:CDS | 25.0% |
| !! | TCTAATTTTGTATGTGAGAT+TGG | - | chr3.3:60764252-60764271 | MS.gene62159:intron | 25.0% |
| !! | TGCTTTTCTTACTCTTAATT+AGG | - | chr3.3:60765599-60765618 | MS.gene62159:intron | 25.0% |
| !! | TTAATGGACGAAAATGATAT+CGG | - | chr3.3:60764802-60764821 | MS.gene62159:CDS | 25.0% |
| !! | TTCAATCCTTTTATTGTTAC+CGG | - | chr3.3:60764622-60764641 | MS.gene62159:CDS | 25.0% |
| !! | TTTTGTCTTGAATTTCTCTT+TGG | - | chr3.3:60765207-60765226 | MS.gene62159:CDS | 25.0% |
| !!! | AGAATCAATTCTAGAATCAA+AGG | - | chr3.3:60763105-60763124 | MS.gene62159:CDS | 25.0% |
| !!! | ATCCTTTTTTTAAGTGAATC+AGG | + | chr3.3:60764040-60764059 | None:intergenic | 25.0% |
| !!! | TTCACTTTTAAGTGTATGTT+TGG | - | chr3.3:60762946-60762965 | MS.gene62159:intron | 25.0% |
| AATCAAAGGCTACAAATAGT+AGG | - | chr3.3:60763119-60763138 | MS.gene62159:CDS | 30.0% | |
| ACAAAATGATGCAATCTTAC+AGG | - | chr3.3:60763698-60763717 | MS.gene62159:intron | 30.0% | |
| ACAATGGTAAACTCATATCT+TGG | + | chr3.3:60763439-60763458 | None:intergenic | 30.0% | |
| AGCTAAAGAAGAAAAGGAAA+AGG | - | chr3.3:60764096-60764115 | MS.gene62159:intron | 30.0% | |
| ATGAATTCTCGTCAAATTGT+TGG | + | chr3.3:60763657-60763676 | None:intergenic | 30.0% | |
| ATTAAGCTGAAAACAGCTTA+TGG | + | chr3.3:60765829-60765848 | None:intergenic | 30.0% | |
| CAAAGTCAACAGATAATAGT+TGG | - | chr3.3:60766164-60766183 | MS.gene62159:CDS | 30.0% | |
| CAAATGTTTGACGTCTATTA+AGG | - | chr3.3:60763747-60763766 | MS.gene62159:CDS | 30.0% | |
| CACCTGATTCACTTAAAAAA+AGG | - | chr3.3:60764035-60764054 | MS.gene62159:intron | 30.0% | |
| CATATGGAAAAGAAATTGTC+AGG | - | chr3.3:60764520-60764539 | MS.gene62159:intron | 30.0% | |
| CGGCTACTAATTGAAAATTT+AGG | - | chr3.3:60765139-60765158 | MS.gene62159:intron | 30.0% | |
| GAGTGATTGAATTGGATATA+TGG | - | chr3.3:60763564-60763583 | MS.gene62159:intron | 30.0% | |
| GGTCATAATTCATATCTAAC+TGG | - | chr3.3:60763479-60763498 | MS.gene62159:intron | 30.0% | |
| TAAAGAAGAAAAGGAAAAGG+AGG | - | chr3.3:60764099-60764118 | MS.gene62159:intron | 30.0% | |
| TAAATATTTGTCCTTGGCAA+TGG | - | chr3.3:60764662-60764681 | MS.gene62159:CDS | 30.0% | |
| TAACTTGGAACATAACTGTT+TGG | + | chr3.3:60765983-60766002 | None:intergenic | 30.0% | |
| TAGATGGTTACTCAAACATT+TGG | - | chr3.3:60763965-60763984 | MS.gene62159:intron | 30.0% | |
| TATATAACAAGAAACCTGTG+AGG | - | chr3.3:60765109-60765128 | MS.gene62159:intron | 30.0% | |
| TTCATATCTAATAGACTGCA+AGG | + | chr3.3:60766033-60766052 | None:intergenic | 30.0% | |
| TTCTATCTTTAGCAAAACAG+TGG | - | chr3.3:60764294-60764313 | MS.gene62159:CDS | 30.0% | |
| ! | AACCATCTAAAATTTGAACG+GGG | + | chr3.3:60763954-60763973 | None:intergenic | 30.0% |
| ! | ACCTTCAAAGTAGTTTTTGA+TGG | + | chr3.3:60765476-60765495 | None:intergenic | 30.0% |
| ! | ATTTTGTATGTGAGATTGGT+TGG | - | chr3.3:60764256-60764275 | MS.gene62159:intron | 30.0% |
| ! | CCAGTTTTCAATAGAAAATC+AGG | + | chr3.3:60765416-60765435 | None:intergenic | 30.0% |
| ! | CCTGATTTTCTATTGAAAAC+TGG | - | chr3.3:60765413-60765432 | MS.gene62159:intron | 30.0% |
| ! | GTAGACAAAATTGGTTTAAG+AGG | - | chr3.3:60762815-60762834 | MS.gene62159:intron | 30.0% |
| ! | TCTTCTAGTGTTATTACAAC+CGG | + | chr3.3:60763799-60763818 | None:intergenic | 30.0% |
| ! | TTGAGTAGTGACTTTTACAA+GGG | - | chr3.3:60765518-60765537 | MS.gene62159:intron | 30.0% |
| ! | TTTGAGTAGTGACTTTTACA+AGG | - | chr3.3:60765517-60765536 | MS.gene62159:intron | 30.0% |
| !! | ATCTACATCTCACTTTTAGT+CGG | + | chr3.3:60763024-60763043 | None:intergenic | 30.0% |
| !! | TTATAGAGTTGAGTTGCTTT+TGG | - | chr3.3:60763203-60763222 | MS.gene62159:intron | 30.0% |
| !! | TTTCCGTTATTTTGTCAAGT+TGG | + | chr3.3:60764759-60764778 | None:intergenic | 30.0% |
| !!! | TAAATTATTTTTGCTGTGGG+TGG | - | chr3.3:60765307-60765326 | MS.gene62159:CDS | 30.0% |
| AAACATTTGATAAGTGGCAC+AGG | + | chr3.3:60763736-60763755 | None:intergenic | 35.0% | |
| AAATTCCTTCAAGGTTTCTG+AGG | + | chr3.3:60764011-60764030 | None:intergenic | 35.0% | |
| AACCTATCTTAGAGAGCTTA+TGG | + | chr3.3:60765853-60765872 | None:intergenic | 35.0% | |
| AAGATCTCTACGATCAATGA+TGG | + | chr3.3:60762588-60762607 | None:intergenic | 35.0% | |
| AATAGCCAACAAGGTAAAAG+AGG | + | chr3.3:60762682-60762701 | None:intergenic | 35.0% | |
| AATGTCTTGATACAGCTGAA+AGG | + | chr3.3:60765260-60765279 | None:intergenic | 35.0% | |
| ACATCATCCTTAGAGTCATT+AGG | + | chr3.3:60763590-60763609 | None:intergenic | 35.0% | |
| ACTATGTTGGTGTGTGATAA+TGG | - | chr3.3:60763369-60763388 | MS.gene62159:CDS | 35.0% | |
| AGGATCGAAAACCTCATTAT+TGG | + | chr3.3:60765441-60765460 | None:intergenic | 35.0% | |
| AGGTGAAAGAAATTCCTTCA+AGG | + | chr3.3:60764020-60764039 | None:intergenic | 35.0% | |
| AGGTGTTAGAGTGATTGAAT+TGG | - | chr3.3:60763556-60763575 | MS.gene62159:intron | 35.0% | |
| ATAATAGTTGGTTGCCTTCT+TGG | - | chr3.3:60766176-60766195 | MS.gene62159:CDS | 35.0% | |
| CCTTGAAGCTAAAGAAGAAA+AGG | - | chr3.3:60764090-60764109 | MS.gene62159:intron | 35.0% | |
| GACGTCAAACATTTGATAAG+TGG | + | chr3.3:60763742-60763761 | None:intergenic | 35.0% | |
| GCCATCAAAAACTACTTTGA+AGG | - | chr3.3:60765472-60765491 | MS.gene62159:intron | 35.0% | |
| GGATCGAAAACCTCATTATT+GGG | + | chr3.3:60765440-60765459 | None:intergenic | 35.0% | |
| GGTAAACTTACATTCCATGA+AGG | + | chr3.3:60763619-60763638 | None:intergenic | 35.0% | |
| TATATGGCCTAATGACTCTA+AGG | - | chr3.3:60763580-60763599 | MS.gene62159:intron | 35.0% | |
| TCAAATACCTCATTCCAAGA+AGG | + | chr3.3:60766193-60766212 | None:intergenic | 35.0% | |
| TCTTGAATTTCTCTTTGGTG+AGG | - | chr3.3:60765212-60765231 | MS.gene62159:CDS | 35.0% | |
| TGAATATGACATGTCTGAGA+AGG | - | chr3.3:60766261-60766280 | MS.gene62159:CDS | 35.0% | |
| TGATAAACTCTTATGCAGGT+TGG | - | chr3.3:60766103-60766122 | MS.gene62159:intron | 35.0% | |
| TGTCGATGAAGATGATCTTA+AGG | - | chr3.3:60764317-60764336 | MS.gene62159:CDS | 35.0% | |
| TGTTGTATTTATCTCCTTCG+CGG | + | chr3.3:60766360-60766379 | None:intergenic | 35.0% | |
| TTTAGGTGATGAAGAAGCTT+GGG | - | chr3.3:60764141-60764160 | MS.gene62159:intron | 35.0% | |
| ! | AATAGTGGAATGTCTCAAAG+TGG | - | chr3.3:60764437-60764456 | MS.gene62159:CDS | 35.0% |
| ! | ACGAAAACAGCTTTTAAGCA+AGG | - | chr3.3:60765873-60765892 | MS.gene62159:intron | 35.0% |
| ! | ATGTCTGAGAAGGATGATTT+TGG | - | chr3.3:60766271-60766290 | MS.gene62159:CDS | 35.0% |
| ! | CAAAAACTACTTTGAAGGTG+AGG | - | chr3.3:60765477-60765496 | MS.gene62159:intron | 35.0% |
| ! | CAAGGAATGTTTAAAGCCAA+TGG | - | chr3.3:60765368-60765387 | MS.gene62159:intron | 35.0% |
| ! | CTGTTTCTTTGTGTGATTTC+AGG | - | chr3.3:60763409-60763428 | MS.gene62159:CDS | 35.0% |
| ! | GCTTAATTGCTATTCATGCT+GGG | - | chr3.3:60764400-60764419 | MS.gene62159:CDS | 35.0% |
| ! | GTAATCCTCTTTTACCTTGT+TGG | - | chr3.3:60762674-60762693 | MS.gene62159:intron | 35.0% |
| ! | TGTAGTCATCTGATGCATTT+TGG | + | chr3.3:60764377-60764396 | None:intergenic | 35.0% |
| ! | TTTGATGGCAAATGAGCTTT+AGG | + | chr3.3:60765461-60765480 | None:intergenic | 35.0% |
| !! | CCTTTTCTTCTTTAGCTTCA+AGG | + | chr3.3:60764093-60764112 | None:intergenic | 35.0% |
| !! | GCACTTGAAAAGCACTTATA+AGG | - | chr3.3:60763225-60763244 | MS.gene62159:intron | 35.0% |
| !! | TTCCATAAGCTCTCTAAGAT+AGG | - | chr3.3:60765848-60765867 | MS.gene62159:intron | 35.0% |
| AAAGAAGTCCCTAGTTTGAG+AGG | - | chr3.3:60764166-60764185 | MS.gene62159:intron | 40.0% | |
| ACAAACATGCTTACCTGTGT+GGG | - | chr3.3:60766297-60766316 | MS.gene62159:CDS | 40.0% | |
| ATATTGCGAGTGTATCCGAA+AGG | - | chr3.3:60764977-60764996 | MS.gene62159:CDS | 40.0% | |
| ATCTCCAGACTTCTATGCAA+GGG | - | chr3.3:60765686-60765705 | MS.gene62159:intron | 40.0% | |
| ATGCCATCTAAGAAGACAGT+CGG | + | chr3.3:60764693-60764712 | None:intergenic | 40.0% | |
| CAAGCTTCTTCATCACCTAA+AGG | + | chr3.3:60764142-60764161 | None:intergenic | 40.0% | |
| CATTCCACTATTCCACCTTT+AGG | + | chr3.3:60764429-60764448 | None:intergenic | 40.0% | |
| CGAAACGCAGAAACAAACAT+AGG | + | chr3.3:60762794-60762813 | None:intergenic | 40.0% | |
| CGATGAAGATGATCTTAAGG+AGG | - | chr3.3:60764320-60764339 | MS.gene62159:CDS | 40.0% | |
| CGGTACTATAGCTGATTACA+AGG | - | chr3.3:60764189-60764208 | MS.gene62159:intron | 40.0% | |
| CTCAAATCTCAAAGCCGTAA+AGG | + | chr3.3:60765503-60765522 | None:intergenic | 40.0% | |
| CTGTATATATGGGAGAAGGA+TGG | - | chr3.3:60765625-60765644 | MS.gene62159:intron | 40.0% | |
| CTTAGACGTCTCACTTTATC+AGG | + | chr3.3:60764465-60764484 | None:intergenic | 40.0% | |
| CTTTAGGTGATGAAGAAGCT+TGG | - | chr3.3:60764140-60764159 | MS.gene62159:intron | 40.0% | |
| GAAAACTGGTCCCAATAATG+AGG | - | chr3.3:60765427-60765446 | MS.gene62159:intron | 40.0% | |
| GAAAAGGCTGCTGAAACATA+TGG | - | chr3.3:60764504-60764523 | MS.gene62159:intron | 40.0% | |
| GATGATGTTGATGTCCTTCA+TGG | - | chr3.3:60763602-60763621 | MS.gene62159:intron | 40.0% | |
| GATGGTTGCATTTAACATGC+AGG | - | chr3.3:60765057-60765076 | MS.gene62159:CDS | 40.0% | |
| GTCACTGTATATATGGGAGA+AGG | - | chr3.3:60765621-60765640 | MS.gene62159:intron | 40.0% | |
| GTCTAGAGACACTTGAATGA+CGG | + | chr3.3:60765557-60765576 | None:intergenic | 40.0% | |
| GTTGTATTTATCTCCTTCGC+GGG | + | chr3.3:60766359-60766378 | None:intergenic | 40.0% | |
| TCAACACTCAAGTGCATGTT+TGG | + | chr3.3:60763315-60763334 | None:intergenic | 40.0% | |
| TCACAGAAGAGAAAGCCTTT+AGG | - | chr3.3:60764124-60764143 | MS.gene62159:intron | 40.0% | |
| TGAAGATGATCTTAAGGAGG+AGG | - | chr3.3:60764323-60764342 | MS.gene62159:CDS | 40.0% | |
| TGGACGAAAATGATATCGGA+CGG | - | chr3.3:60764806-60764825 | MS.gene62159:CDS | 40.0% | |
| TGGTAAAGCTCCTTTATCTC+CGG | + | chr3.3:60762464-60762483 | None:intergenic | 40.0% | |
| TTAGGTGATGAAGAAGCTTG+GGG | - | chr3.3:60764142-60764161 | MS.gene62159:intron | 40.0% | |
| TTGATCCTCTGATTGTTGAC+AGG | - | chr3.3:60764939-60764958 | MS.gene62159:intron | 40.0% | |
| ! | AGATCTCTTTGGTTGATGCA+AGG | - | chr3.3:60765350-60765369 | MS.gene62159:CDS | 40.0% |
| ! | AGCCCCGTTCAAATTTTAGA+TGG | - | chr3.3:60763949-60763968 | MS.gene62159:intron | 40.0% |
| ! | CGCTTAATTGCTATTCATGC+TGG | - | chr3.3:60764399-60764418 | MS.gene62159:CDS | 40.0% |
| ! | GCGTTTCGAGTAGACAAAAT+TGG | - | chr3.3:60762806-60762825 | MS.gene62159:intron | 40.0% |
| ! | GGAATGTTTAAAGCCAATGG+AGG | - | chr3.3:60765371-60765390 | MS.gene62159:intron | 40.0% |
| ! | TCTGAGAAGGATGATTTTGG+TGG | - | chr3.3:60766274-60766293 | MS.gene62159:CDS | 40.0% |
| ! | TTAGCTTCAAGGTACTCCTT+AGG | + | chr3.3:60764082-60764101 | None:intergenic | 40.0% |
| ! | TTTAAAGCCAATGGAGGATG+CGG | - | chr3.3:60765377-60765396 | MS.gene62159:intron | 40.0% |
| ! | TTTTCAATTAGTAGCCGTGC+TGG | + | chr3.3:60765136-60765155 | None:intergenic | 40.0% |
| !! | CTTTGGAACAAACACATTGC+AGG | - | chr3.3:60764882-60764901 | MS.gene62159:intron | 40.0% |
| !! | GTGTATGTTTGGTTCTGCTT+TGG | - | chr3.3:60762957-60762976 | MS.gene62159:intron | 40.0% |
| AACAAAACCGCATCCTCCAT+TGG | + | chr3.3:60765387-60765406 | None:intergenic | 45.0% | |
| AAGTGAGTCACAGCTCGAAA+AGG | - | chr3.3:60764488-60764507 | MS.gene62159:intron | 45.0% | |
| ACCGAAAAAACCCAGCGTAT+CGG | - | chr3.3:60762430-60762449 | MS.gene62159:CDS | 45.0% | |
| AGGGTTATGGGAGATCTCTT+TGG | - | chr3.3:60765339-60765358 | MS.gene62159:CDS | 45.0% | |
| ATAGTACCGCCTCTCAAACT+AGG | + | chr3.3:60764178-60764197 | None:intergenic | 45.0% | |
| ATTCATGCTGGGAAGCCTAA+AGG | - | chr3.3:60764411-60764430 | MS.gene62159:CDS | 45.0% | |
| CAAGTGCATGTTTGGATCTG+CGG | + | chr3.3:60763307-60763326 | None:intergenic | 45.0% | |
| CATACCCTTGCATAGAAGTC+TGG | + | chr3.3:60765693-60765712 | None:intergenic | 45.0% | |
| CATCTCCAGACTTCTATGCA+AGG | - | chr3.3:60765685-60765704 | MS.gene62159:intron | 45.0% | |
| CCATGCATCCACCCAATTAA+TGG | + | chr3.3:60765031-60765050 | None:intergenic | 45.0% | |
| CCATTAATTGGGTGGATGCA+TGG | - | chr3.3:60765028-60765047 | MS.gene62159:CDS | 45.0% | |
| CCTCAATCAGAAAGCTTCTG+AGG | + | chr3.3:60762526-60762545 | None:intergenic | 45.0% | |
| CCTCAGAAGCTTTCTGATTG+AGG | - | chr3.3:60762523-60762542 | MS.gene62159:CDS | 45.0% | |
| CCTGTGTGGGAACTAAGAAA+CGG | - | chr3.3:60766310-60766329 | MS.gene62159:CDS | 45.0% | |
| CTAACTAACCTGAGCCACTT+TGG | + | chr3.3:60763845-60763864 | None:intergenic | 45.0% | |
| CTTCGTTGCGTCTGAATATC+CGG | - | chr3.3:60763777-60763796 | MS.gene62159:CDS | 45.0% | |
| GAAGCCTAAAGGTGGAATAG+TGG | - | chr3.3:60764422-60764441 | MS.gene62159:CDS | 45.0% | |
| GAATCAAGAGCCAATGCAAC+AGG | + | chr3.3:60764605-60764624 | None:intergenic | 45.0% | |
| GACAAACATGCTTACCTGTG+TGG | - | chr3.3:60766296-60766315 | MS.gene62159:CDS | 45.0% | |
| GAGGTAATGCGTGTACCTTT+CGG | + | chr3.3:60764995-60765014 | None:intergenic | 45.0% | |
| GTAAAAGAGGATTACCCCAG+TGG | + | chr3.3:60762669-60762688 | None:intergenic | 45.0% | |
| GTGAACCTGTCAACAATCAG+AGG | + | chr3.3:60764947-60764966 | None:intergenic | 45.0% | |
| TAAAGCTCCTTTATCTCCGG+CGG | + | chr3.3:60762461-60762480 | None:intergenic | 45.0% | |
| TACCATCGTTACTCCGATGA+AGG | - | chr3.3:60762479-60762498 | MS.gene62159:CDS | 45.0% | |
| TAGTACCGCCTCTCAAACTA+GGG | + | chr3.3:60764177-60764196 | None:intergenic | 45.0% | |
| TCCTACCTCAGAAACCTTGA+AGG | - | chr3.3:60764003-60764022 | MS.gene62159:intron | 45.0% | |
| TGAATTCCCGCTTTCTGTTC+CGG | - | chr3.3:60766210-60766229 | MS.gene62159:CDS | 45.0% | |
| TGGTTCTTTGGCAGGGTTAT+GGG | - | chr3.3:60765327-60765346 | MS.gene62159:CDS | 45.0% | |
| TTGGTTGCCTTCTTGGAATG+AGG | - | chr3.3:60766183-60766202 | MS.gene62159:CDS | 45.0% | |
| ! | AGTGGCTCAGGTTAGTTAGT+TGG | - | chr3.3:60763846-60763865 | MS.gene62159:intron | 45.0% |
| ! | ATCATCGAAGCACTTCAGAG+AGG | - | chr3.3:60763536-60763555 | MS.gene62159:intron | 45.0% |
| ! | CTCCTCTTTTACCTTCCACT+GGG | - | chr3.3:60762651-60762670 | MS.gene62159:CDS | 45.0% |
| ! | CTTATGCAGGTTGGAATTGC+TGG | - | chr3.3:60766112-60766131 | MS.gene62159:intron | 45.0% |
| ! | CTTTGAAGGTGAGGCCTTTA+CGG | - | chr3.3:60765486-60765505 | MS.gene62159:intron | 45.0% |
| ! | TCACCGACTGTCTTCTTAGA+TGG | - | chr3.3:60764687-60764706 | MS.gene62159:CDS | 45.0% |
| ! | TCCTCTTTTACCTTCCACTG+GGG | - | chr3.3:60762652-60762671 | MS.gene62159:CDS | 45.0% |
| ! | TCTGAAGTGCTTCGATGATG+GGG | + | chr3.3:60763535-60763554 | None:intergenic | 45.0% |
| !! | CTCTGAAGTGCTTCGATGAT+GGG | + | chr3.3:60763536-60763555 | None:intergenic | 45.0% |
| !! | TCCTTCAAGGTTTCTGAGGT+AGG | + | chr3.3:60764007-60764026 | None:intergenic | 45.0% |
| !! | TCTCTGAAGTGCTTCGATGA+TGG | + | chr3.3:60763537-60763556 | None:intergenic | 45.0% |
| !! | TTTTGCTGTGGGTGGTTCTT+TGG | - | chr3.3:60765315-60765334 | MS.gene62159:CDS | 45.0% |
| !!! | TCCGATACGCTGGGTTTTTT+CGG | + | chr3.3:60762434-60762453 | None:intergenic | 45.0% |
| !! | AGTAATTAAATATTATTTAA+TGG | - | chr3.3:60764786-60764805 | MS.gene62159:CDS | 5.0% |
| !! | TATTAAATTAAATTTGTAAA+TGG | - | chr3.3:60762698-60762717 | MS.gene62159:intron | 5.0% |
| AAGAGGATTACCCCAGTGGA+AGG | + | chr3.3:60762665-60762684 | None:intergenic | 50.0% | |
| ACCCCAGTGGAAGGTAAAAG+AGG | + | chr3.3:60762656-60762675 | None:intergenic | 50.0% | |
| AGATTCCGACGAAGCGGAAA+AGG | - | chr3.3:60764347-60764366 | MS.gene62159:CDS | 50.0% | |
| AGTCGGTGAAACCATTGCCA+AGG | + | chr3.3:60764676-60764695 | None:intergenic | 50.0% | |
| ATCGTTACTCCGATGAAGGC+GGG | - | chr3.3:60762483-60762502 | MS.gene62159:CDS | 50.0% | |
| CATATCAACCAAGCCGCCTA+AGG | - | chr3.3:60764063-60764082 | MS.gene62159:intron | 50.0% | |
| CATCGTTACTCCGATGAAGG+CGG | - | chr3.3:60762482-60762501 | MS.gene62159:CDS | 50.0% | |
| CCACCTTACTCCTGATCTTC+AGG | - | chr3.3:60763819-60763838 | MS.gene62159:CDS | 50.0% | |
| CCAGTGGAAGGTAAAAGAGG+AGG | + | chr3.3:60762653-60762672 | None:intergenic | 50.0% | |
| CCGTTTCTTAGTTCCCACAC+AGG | + | chr3.3:60766313-60766332 | None:intergenic | 50.0% | |
| CCTGAAGATCAGGAGTAAGG+TGG | + | chr3.3:60763822-60763841 | None:intergenic | 50.0% | |
| CGGATATTCAGACGCAACGA+AGG | + | chr3.3:60763779-60763798 | None:intergenic | 50.0% | |
| GAAAAAACCCAGCGTATCGG+AGG | - | chr3.3:60762433-60762452 | MS.gene62159:CDS | 50.0% | |
| GAAGTCCCTAGTTTGAGAGG+CGG | - | chr3.3:60764169-60764188 | MS.gene62159:intron | 50.0% | |
| GACGTGTTTGCGTTGCTCTT+GGG | - | chr3.3:60762853-60762872 | MS.gene62159:intron | 50.0% | |
| GTGGTTCTTTGGCAGGGTTA+TGG | - | chr3.3:60765326-60765345 | MS.gene62159:CDS | 50.0% | |
| GTTCCATTACATTCCCGCGA+AGG | - | chr3.3:60766343-60766362 | MS.gene62159:CDS | 50.0% | |
| TCCTGATCTTCAGGCCAAAG+TGG | - | chr3.3:60763828-60763847 | MS.gene62159:intron | 50.0% | |
| TCTCCTTCGCGGGAATGTAA+TGG | + | chr3.3:60766349-60766368 | None:intergenic | 50.0% | |
| TGACGTGTTTGCGTTGCTCT+TGG | - | chr3.3:60762852-60762871 | MS.gene62159:intron | 50.0% | |
| TGGCCTGAAGATCAGGAGTA+AGG | + | chr3.3:60763825-60763844 | None:intergenic | 50.0% | |
| TGTCATGATCCCGCCTTCAT+CGG | + | chr3.3:60762495-60762514 | None:intergenic | 50.0% | |
| ! | CCTCCTCTTTTACCTTCCAC+TGG | - | chr3.3:60762650-60762669 | MS.gene62159:CDS | 50.0% |
| ! | CTGAAGTGCTTCGATGATGG+GGG | + | chr3.3:60763534-60763553 | None:intergenic | 50.0% |
| ! | GCTTCAAGGTACTCCTTAGG+CGG | + | chr3.3:60764079-60764098 | None:intergenic | 50.0% |
| CATGCTGGGAAGCCTAAAGG+TGG | - | chr3.3:60764414-60764433 | MS.gene62159:CDS | 55.0% | |
| CGCCTTCATCGGAGTAACGA+TGG | + | chr3.3:60762484-60762503 | None:intergenic | 55.0% | |
| CTGTGGGTGGTTCTTTGGCA+GGG | - | chr3.3:60765320-60765339 | MS.gene62159:CDS | 55.0% | |
| GAAACCTGTGAGGTCCAGCA+CGG | - | chr3.3:60765119-60765138 | MS.gene62159:intron | 55.0% | |
| GGAGGAAGATTCCGACGAAG+CGG | - | chr3.3:60764341-60764360 | MS.gene62159:CDS | 55.0% | |
| GTGGATGCATGGAGCTCAGA+TGG | - | chr3.3:60765039-60765058 | MS.gene62159:CDS | 55.0% | |
| TCTTCAGGCCAAAGTGGCTC+AGG | - | chr3.3:60763834-60763853 | MS.gene62159:intron | 55.0% | |
| ! | AAGGTACTCCTTAGGCGGCT+TGG | + | chr3.3:60764074-60764093 | None:intergenic | 55.0% |
| ! | GCCACTTTGGCCTGAAGATC+AGG | + | chr3.3:60763832-60763851 | None:intergenic | 55.0% |
| CCAGCTCCGGAACAGAAAGC+GGG | + | chr3.3:60766219-60766238 | None:intergenic | 60.0% | |
| GCCAGCTCCGGAACAGAAAG+CGG | + | chr3.3:60766220-60766239 | None:intergenic | 60.0% | |
| GCTGTGGGTGGTTCTTTGGC+AGG | - | chr3.3:60765319-60765338 | MS.gene62159:CDS | 60.0% | |
| ! | GCGTGCCTTTTCCGCTTCGT+CGG | + | chr3.3:60764355-60764374 | None:intergenic | 60.0% |
| ATGCGAAGCAGCGCCAGCTC+CGG | + | chr3.3:60766232-60766251 | None:intergenic | 65.0% | |
| CCCGCTTTCTGTTCCGGAGC+TGG | - | chr3.3:60766216-60766235 | MS.gene62159:CDS | 65.0% | |
| GTAGCCGTGCTGGACCTCAC+AGG | + | chr3.3:60765126-60765145 | None:intergenic | 65.0% | |
| !! | GGAGGCACCGCCGGAGATAA+AGG | - | chr3.3:60762451-60762470 | MS.gene62159:CDS | 65.0% |
| GGCGGTGCCTCCGATACGCT+GGG | + | chr3.3:60762443-60762462 | None:intergenic | 70.0% | |
| !! | CAGCGTATCGGAGGCACCGC+CGG | - | chr3.3:60762442-60762461 | MS.gene62159:CDS | 70.0% |
| CGGCGGTGCCTCCGATACGC+TGG | + | chr3.3:60762444-60762463 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 60762419 | 60766381 | 60762419 | ID=MS.gene62159 |
| chr3.3 | mRNA | 60762419 | 60766381 | 60762419 | ID=MS.gene62159.t1;Parent=MS.gene62159 |
| chr3.3 | exon | 60766127 | 60766381 | 60766127 | ID=MS.gene62159.t1.exon1;Parent=MS.gene62159.t1 |
| chr3.3 | CDS | 60766127 | 60766381 | 60766127 | ID=cds.MS.gene62159.t1;Parent=MS.gene62159.t1 |
| chr3.3 | exon | 60765173 | 60765369 | 60765173 | ID=MS.gene62159.t1.exon2;Parent=MS.gene62159.t1 |
| chr3.3 | CDS | 60765173 | 60765369 | 60765173 | ID=cds.MS.gene62159.t1;Parent=MS.gene62159.t1 |
| chr3.3 | exon | 60764945 | 60765080 | 60764945 | ID=MS.gene62159.t1.exon3;Parent=MS.gene62159.t1 |
| chr3.3 | CDS | 60764945 | 60765080 | 60764945 | ID=cds.MS.gene62159.t1;Parent=MS.gene62159.t1 |
| chr3.3 | exon | 60764590 | 60764832 | 60764590 | ID=MS.gene62159.t1.exon4;Parent=MS.gene62159.t1 |
| chr3.3 | CDS | 60764590 | 60764832 | 60764590 | ID=cds.MS.gene62159.t1;Parent=MS.gene62159.t1 |
| chr3.3 | exon | 60764259 | 60764494 | 60764259 | ID=MS.gene62159.t1.exon5;Parent=MS.gene62159.t1 |
| chr3.3 | CDS | 60764259 | 60764494 | 60764259 | ID=cds.MS.gene62159.t1;Parent=MS.gene62159.t1 |
| chr3.3 | exon | 60763722 | 60763839 | 60763722 | ID=MS.gene62159.t1.exon6;Parent=MS.gene62159.t1 |
| chr3.3 | CDS | 60763722 | 60763839 | 60763722 | ID=cds.MS.gene62159.t1;Parent=MS.gene62159.t1 |
| chr3.3 | exon | 60763307 | 60763459 | 60763307 | ID=MS.gene62159.t1.exon7;Parent=MS.gene62159.t1 |
| chr3.3 | CDS | 60763307 | 60763459 | 60763307 | ID=cds.MS.gene62159.t1;Parent=MS.gene62159.t1 |
| chr3.3 | exon | 60763093 | 60763179 | 60763093 | ID=MS.gene62159.t1.exon8;Parent=MS.gene62159.t1 |
| chr3.3 | CDS | 60763093 | 60763179 | 60763093 | ID=cds.MS.gene62159.t1;Parent=MS.gene62159.t1 |
| chr3.3 | exon | 60762419 | 60762679 | 60762419 | ID=MS.gene62159.t1.exon9;Parent=MS.gene62159.t1 |
| chr3.3 | CDS | 60762419 | 60762679 | 60762419 | ID=cds.MS.gene62159.t1;Parent=MS.gene62159.t1 |
| Gene Sequence |
| Protein sequence |
