Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69296.t1 | XP_003600780.1 | 96.6 | 562 | 19 | 0 | 1 | 562 | 1 | 562 | 0.00E+00 | 1102.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69296.t1 | Q39033 | 67.5 | 572 | 163 | 7 | 2 | 562 | 12 | 571 | 1.9e-226 | 786.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69296.t1 | G7JA07 | 96.6 | 562 | 19 | 0 | 1 | 562 | 1 | 562 | 0.0e+00 | 1102.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050426 | MS.gene69296 | -0.80552 | 1.28E-49 | -1.69E-46 |
| MS.gene052188 | MS.gene69296 | 0.810036 | 1.41E-50 | -1.69E-46 |
| MS.gene052340 | MS.gene69296 | 0.809453 | 1.88E-50 | -1.69E-46 |
| MS.gene054349 | MS.gene69296 | 0.816253 | 6.08E-52 | -1.69E-46 |
| MS.gene05553 | MS.gene69296 | 0.826406 | 2.76E-54 | -1.69E-46 |
| MS.gene056659 | MS.gene69296 | 0.824686 | 7.06E-54 | -1.69E-46 |
| MS.gene057749 | MS.gene69296 | 0.848282 | 6.77E-60 | -1.69E-46 |
| MS.gene057823 | MS.gene69296 | 0.851647 | 7.74E-61 | -1.69E-46 |
| MS.gene058710 | MS.gene69296 | 0.805963 | 1.04E-49 | -1.69E-46 |
| MS.gene058928 | MS.gene69296 | 0.818957 | 1.49E-52 | -1.69E-46 |
| MS.gene059285 | MS.gene69296 | 0.81661 | 5.06E-52 | -1.69E-46 |
| MS.gene059420 | MS.gene69296 | 0.820539 | 6.50E-53 | -1.69E-46 |
| MS.gene060407 | MS.gene69296 | 0.814872 | 1.23E-51 | -1.69E-46 |
| MS.gene061049 | MS.gene69296 | 0.801664 | 8.09E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene69296 | MS.gene057347 | PPI |
| MS.gene008126 | MS.gene69296 | PPI |
| MS.gene69296 | MS.gene62159 | PPI |
| MS.gene008055 | MS.gene69296 | PPI |
| MS.gene69296 | MS.gene031403 | PPI |
| MS.gene69296 | MS.gene059849 | PPI |
| MS.gene69222 | MS.gene69296 | PPI |
| MS.gene69296 | MS.gene065186 | PPI |
| MS.gene068784 | MS.gene69296 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69296.t1 | MTR_3g069280 | 97.865 | 562 | 12 | 0 | 1 | 562 | 1 | 562 | 0.0 | 1139 |
| MS.gene69296.t1 | MTR_3g070720 | 91.624 | 585 | 24 | 3 | 1 | 562 | 1 | 583 | 0.0 | 1000 |
| MS.gene69296.t1 | MTR_5g082620 | 74.513 | 565 | 133 | 5 | 7 | 562 | 17 | 579 | 0.0 | 869 |
| MS.gene69296.t1 | MTR_3g070720 | 91.383 | 499 | 18 | 3 | 1 | 476 | 1 | 497 | 0.0 | 828 |
| MS.gene69296.t1 | MTR_3g070720 | 91.064 | 470 | 17 | 3 | 1 | 447 | 1 | 468 | 0.0 | 765 |
| MS.gene69296.t1 | MTR_5g071010 | 61.140 | 579 | 203 | 6 | 2 | 562 | 10 | 584 | 0.0 | 719 |
| MS.gene69296.t1 | MTR_5g082590 | 59.646 | 565 | 195 | 8 | 14 | 559 | 19 | 569 | 0.0 | 672 |
| MS.gene69296.t1 | MTR_3g070720 | 90.431 | 418 | 15 | 3 | 1 | 395 | 1 | 416 | 0.0 | 658 |
| MS.gene69296.t1 | MTR_5g082580 | 49.746 | 591 | 251 | 10 | 6 | 562 | 19 | 597 | 0.0 | 563 |
| MS.gene69296.t1 | MTR_3g070710 | 50.261 | 575 | 256 | 8 | 6 | 562 | 15 | 577 | 0.0 | 557 |
| MS.gene69296.t1 | MTR_3g070560 | 50.352 | 568 | 254 | 8 | 12 | 562 | 22 | 578 | 0.0 | 552 |
| MS.gene69296.t1 | MTR_5g071040 | 50.436 | 573 | 237 | 10 | 2 | 562 | 26 | 563 | 0.0 | 538 |
| MS.gene69296.t1 | MTR_3g070560 | 53.771 | 411 | 182 | 4 | 152 | 562 | 3 | 405 | 1.37e-152 | 444 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69296.t1 | AT3G08510 | 68.893 | 569 | 160 | 6 | 2 | 562 | 12 | 571 | 0.0 | 807 |
| MS.gene69296.t1 | AT3G08510 | 68.893 | 569 | 160 | 6 | 2 | 562 | 12 | 571 | 0.0 | 807 |
| MS.gene69296.t1 | AT3G55940 | 66.549 | 568 | 172 | 7 | 2 | 559 | 12 | 571 | 0.0 | 755 |
| MS.gene69296.t1 | AT3G08510 | 64.851 | 569 | 154 | 7 | 2 | 562 | 12 | 542 | 0.0 | 735 |
| MS.gene69296.t1 | AT3G08510 | 64.851 | 569 | 154 | 7 | 2 | 562 | 12 | 542 | 0.0 | 735 |
| MS.gene69296.t1 | AT2G40116 | 59.524 | 546 | 191 | 7 | 30 | 559 | 69 | 600 | 0.0 | 653 |
| MS.gene69296.t1 | AT5G58700 | 56.424 | 576 | 226 | 8 | 6 | 562 | 18 | 587 | 0.0 | 641 |
| MS.gene69296.t1 | AT5G58700 | 56.424 | 576 | 226 | 8 | 6 | 562 | 18 | 587 | 0.0 | 641 |
| MS.gene69296.t1 | AT5G58700 | 62.708 | 480 | 172 | 4 | 86 | 562 | 4 | 479 | 0.0 | 614 |
| MS.gene69296.t1 | AT5G58690 | 52.632 | 570 | 219 | 7 | 13 | 559 | 24 | 565 | 0.0 | 594 |
| MS.gene69296.t1 | AT5G58690 | 52.632 | 570 | 219 | 7 | 13 | 559 | 5 | 546 | 0.0 | 594 |
| MS.gene69296.t1 | AT5G58690 | 52.632 | 570 | 219 | 7 | 13 | 559 | 24 | 565 | 0.0 | 594 |
| MS.gene69296.t1 | AT5G58670 | 51.064 | 564 | 230 | 5 | 11 | 562 | 20 | 549 | 0.0 | 553 |
| MS.gene69296.t1 | AT4G38530 | 48.161 | 571 | 251 | 7 | 3 | 562 | 12 | 548 | 0.0 | 526 |
| MS.gene69296.t1 | AT3G47290 | 38.404 | 539 | 262 | 11 | 21 | 557 | 46 | 516 | 4.28e-117 | 357 |
| MS.gene69296.t1 | AT3G47290 | 38.505 | 535 | 259 | 11 | 21 | 553 | 46 | 512 | 5.08e-116 | 356 |
| MS.gene69296.t1 | AT3G47220 | 36.879 | 564 | 271 | 13 | 13 | 557 | 19 | 516 | 3.70e-108 | 334 |
Find 135 sgRNAs with CRISPR-Local
Find 249 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAATTATAATCCATTAAT+TGG | 0.072901 | 3.2:-63237134 | MS.gene69296:CDS |
| ATAATAGTTGGTTGCCTTCT+TGG | 0.178944 | 3.2:-63235974 | MS.gene69296:CDS |
| AGGATCGAAAACCTCATTAT+TGG | 0.216160 | 3.2:+63236712 | None:intergenic |
| CAAATGTTTGACGTCTATTA+AGG | 0.230837 | 3.2:-63238403 | MS.gene69296:CDS |
| CCATGCATCCACCCAATTAA+TGG | 0.240859 | 3.2:+63237122 | None:intergenic |
| TAATTAGGTCACTGTATATA+TGG | 0.245203 | 3.2:-63236536 | MS.gene69296:intron |
| TGGTTCTTTGGCAGGGTTAT+GGG | 0.259926 | 3.2:-63236823 | MS.gene69296:intron |
| TGTAGTCATCTGATGCATTT+TGG | 0.262746 | 3.2:+63237776 | None:intergenic |
| GTGGTTCTTTGGCAGGGTTA+TGG | 0.264327 | 3.2:-63236824 | MS.gene69296:intron |
| CTTAGACGTCTCACTTTATC+AGG | 0.266369 | 3.2:+63237688 | None:intergenic |
| CCCGCTTTCTGTTCCGGAGC+TGG | 0.275180 | 3.2:-63235934 | MS.gene69296:CDS |
| TTTGATGGCAAATGAGCTTT+AGG | 0.277773 | 3.2:+63236692 | None:intergenic |
| CTTATGCAGGTTGGAATTGC+TGG | 0.289356 | 3.2:-63236038 | MS.gene69296:intron |
| TGAATTCCCGCTTTCTGTTC+CGG | 0.306917 | 3.2:-63235940 | MS.gene69296:CDS |
| AGGGTTATGGGAGATCTCTT+TGG | 0.311117 | 3.2:-63236811 | MS.gene69296:CDS |
| GGATCGAAAACCTCATTATT+GGG | 0.335505 | 3.2:+63236713 | None:intergenic |
| CTCTGAAGTGCTTCGATGAT+GGG | 0.355533 | 3.2:+63238617 | None:intergenic |
| CTTCGTTGCGTCTGAATATC+CGG | 0.360784 | 3.2:-63238373 | MS.gene69296:CDS |
| CCACCTTACTCCTGATCTTC+AGG | 0.370917 | 3.2:-63238331 | MS.gene69296:CDS |
| GGTCATAATTCATATCTAAC+TGG | 0.373291 | 3.2:-63238671 | MS.gene69296:CDS |
| TAGATGGTTACTCAAACATT+TGG | 0.373406 | 3.2:-63238185 | MS.gene69296:CDS |
| ATGTCTGAGAAGGATGATTT+TGG | 0.381957 | 3.2:-63235879 | MS.gene69296:CDS |
| TATATGGCCTAATGACTCTA+AGG | 0.383342 | 3.2:-63238570 | MS.gene69296:CDS |
| CATTCCACTATTCCACCTTT+AGG | 0.387588 | 3.2:+63237724 | None:intergenic |
| GCCACTTTGGCCTGAAGATC+AGG | 0.391390 | 3.2:+63238321 | None:intergenic |
| CGCTTAATTGCTATTCATGC+TGG | 0.391854 | 3.2:-63237751 | MS.gene69296:CDS |
| CCTCAGAAGCTTTCTGATTG+AGG | 0.391870 | 3.2:-63239627 | MS.gene69296:CDS |
| GAGTGATTGAATTGGATATA+TGG | 0.394919 | 3.2:-63238586 | MS.gene69296:CDS |
| GGAGGCACCGCCGGAGATAA+AGG | 0.402355 | 3.2:-63239699 | MS.gene69296:CDS |
| TTTAGGTGATGAAGAAGCTT+GGG | 0.407451 | 3.2:-63238009 | MS.gene69296:CDS |
| CGGCGGTGCCTCCGATACGC+TGG | 0.420667 | 3.2:+63239709 | None:intergenic |
| TCTCTGAAGTGCTTCGATGA+TGG | 0.421908 | 3.2:+63238616 | None:intergenic |
| AGGTGTTAGAGTGATTGAAT+TGG | 0.428703 | 3.2:-63238594 | MS.gene69296:CDS |
| TCCTACCTCAGAAACCTTGA+AGG | 0.435352 | 3.2:-63238147 | MS.gene69296:CDS |
| AGATTCCGACGAAGCGGAAA+AGG | 0.438270 | 3.2:-63237803 | MS.gene69296:CDS |
| TCACAGAAGAGAAAGCCTTT+AGG | 0.441642 | 3.2:-63238026 | MS.gene69296:CDS |
| TCTTCTAGTGTTATTACAAC+CGG | 0.444726 | 3.2:+63238354 | None:intergenic |
| CATACCCTTGCATAGAAGTC+TGG | 0.448430 | 3.2:+63236460 | None:intergenic |
| TCTCCTTCGCGGGAATGTAA+TGG | 0.452778 | 3.2:+63235804 | None:intergenic |
| GATGATGTTGATGTCCTTCA+TGG | 0.454017 | 3.2:-63238548 | MS.gene69296:CDS |
| CAAATTATAATCCATTAATT+GGG | 0.455647 | 3.2:-63237133 | MS.gene69296:CDS |
| ATGCGAAGCAGCGCCAGCTC+CGG | 0.456222 | 3.2:+63235921 | None:intergenic |
| CATATGGAAAAGAAATTGTC+AGG | 0.456553 | 3.2:-63237630 | MS.gene69296:intron |
| CCTTGAAGCTAAAGAAGAAA+AGG | 0.464912 | 3.2:-63238060 | MS.gene69296:CDS |
| AAGGTACTCCTTAGGCGGCT+TGG | 0.465613 | 3.2:+63238079 | None:intergenic |
| GAAAAGGCTGCTGAAACATA+TGG | 0.467059 | 3.2:-63237646 | MS.gene69296:CDS |
| CTAACTAACCTGAGCCACTT+TGG | 0.472125 | 3.2:+63238308 | None:intergenic |
| ATAGTACCGCCTCTCAAACT+AGG | 0.474142 | 3.2:+63237975 | None:intergenic |
| GAGGTAATGCGTGTACCTTT+CGG | 0.479808 | 3.2:+63237158 | None:intergenic |
| TACCATCGTTACTCCGATGA+AGG | 0.479952 | 3.2:-63239671 | MS.gene69296:CDS |
| GACGTCAAACATTTGATAAG+TGG | 0.483251 | 3.2:+63238411 | None:intergenic |
| AGCTAAAGAAGAAAAGGAAA+AGG | 0.484145 | 3.2:-63238054 | MS.gene69296:CDS |
| AACAAAACCGCATCCTCCAT+TGG | 0.486065 | 3.2:+63236766 | None:intergenic |
| CCATTAATTGGGTGGATGCA+TGG | 0.487420 | 3.2:-63237122 | MS.gene69296:CDS |
| TCTTCAGGCCAAAGTGGCTC+AGG | 0.489930 | 3.2:-63238316 | MS.gene69296:intron |
| TCACATTATTACATATTCAC+TGG | 0.491218 | 3.2:-63238692 | MS.gene69296:CDS |
| CAAAGTCAACAGATAATAGT+TGG | 0.492685 | 3.2:-63235986 | MS.gene69296:CDS |
| AATTAGGTCACTGTATATAT+GGG | 0.492839 | 3.2:-63236535 | MS.gene69296:intron |
| GATGGTTGCATTTAACATGC+AGG | 0.494100 | 3.2:-63237093 | MS.gene69296:intron |
| CAAGCTTCTTCATCACCTAA+AGG | 0.494465 | 3.2:+63238011 | None:intergenic |
| TTGGTTGCCTTCTTGGAATG+AGG | 0.497276 | 3.2:-63235967 | MS.gene69296:CDS |
| CAGCGTATCGGAGGCACCGC+CGG | 0.501237 | 3.2:-63239708 | MS.gene69296:CDS |
| CTTTAGGTGATGAAGAAGCT+TGG | 0.501759 | 3.2:-63238010 | MS.gene69296:CDS |
| TAAAGAAGAAAAGGAAAAGG+AGG | 0.506940 | 3.2:-63238051 | MS.gene69296:CDS |
| TGTCGATGAAGATGATCTTA+AGG | 0.513054 | 3.2:-63237833 | MS.gene69296:CDS |
| TCCTTCAAGGTTTCTGAGGT+AGG | 0.514356 | 3.2:+63238146 | None:intergenic |
| GAAAACTGGTCCCAATAATG+AGG | 0.515061 | 3.2:-63236723 | MS.gene69296:CDS |
| CGGTACTATAGCTGATTACA+AGG | 0.516593 | 3.2:-63237961 | MS.gene69296:intron |
| GTTGTATTTATCTCCTTCGC+GGG | 0.517351 | 3.2:+63235794 | None:intergenic |
| CAAGGAATGTTTAAAGCCAA+TGG | 0.521167 | 3.2:-63236782 | MS.gene69296:CDS |
| GGCGGTGCCTCCGATACGCT+GGG | 0.521442 | 3.2:+63239710 | None:intergenic |
| AAGATCTCTACGATCAATGA+TGG | 0.522171 | 3.2:+63239565 | None:intergenic |
| AGGTGAAAGAAATTCCTTCA+AGG | 0.523272 | 3.2:+63238133 | None:intergenic |
| GAAGCCTAAAGGTGGAATAG+TGG | 0.523615 | 3.2:-63237728 | MS.gene69296:CDS |
| TTAGCTTCAAGGTACTCCTT+AGG | 0.524662 | 3.2:+63238071 | None:intergenic |
| ATCGTTACTCCGATGAAGGC+GGG | 0.525010 | 3.2:-63239667 | MS.gene69296:CDS |
| TCTGAAGTGCTTCGATGATG+GGG | 0.528251 | 3.2:+63238618 | None:intergenic |
| TGGCCTGAAGATCAGGAGTA+AGG | 0.530572 | 3.2:+63238328 | None:intergenic |
| TGTCATGATCCCGCCTTCAT+CGG | 0.531322 | 3.2:+63239658 | None:intergenic |
| CATATCAACCAAGCCGCCTA+AGG | 0.532591 | 3.2:-63238087 | MS.gene69296:CDS |
| TGTTGTATTTATCTCCTTCG+CGG | 0.535824 | 3.2:+63235793 | None:intergenic |
| ATTATAATCCATTAATTGGG+TGG | 0.536189 | 3.2:-63237130 | MS.gene69296:CDS |
| TGGTAAAGCTCCTTTATCTC+CGG | 0.542445 | 3.2:+63239689 | None:intergenic |
| TTTAAAGCCAATGGAGGATG+CGG | 0.547215 | 3.2:-63236773 | MS.gene69296:CDS |
| ATTCATGCTGGGAAGCCTAA+AGG | 0.548804 | 3.2:-63237739 | MS.gene69296:CDS |
| GCCAGCTCCGGAACAGAAAG+CGG | 0.549635 | 3.2:+63235933 | None:intergenic |
| AAGTGAGTCACAGCTCGAAA+AGG | 0.551984 | 3.2:-63237662 | MS.gene69296:CDS |
| CCAGCTCCGGAACAGAAAGC+GGG | 0.556338 | 3.2:+63235934 | None:intergenic |
| GCTTAATTGCTATTCATGCT+GGG | 0.557069 | 3.2:-63237750 | MS.gene69296:CDS |
| CCTCAATCAGAAAGCTTCTG+AGG | 0.557081 | 3.2:+63239627 | None:intergenic |
| TAGTACCGCCTCTCAAACTA+GGG | 0.558608 | 3.2:+63237976 | None:intergenic |
| TGAAGATGATCTTAAGGAGG+AGG | 0.558834 | 3.2:-63237827 | MS.gene69296:CDS |
| ACAATGGTAAACTCATATCT+TGG | 0.558961 | 3.2:+63238714 | None:intergenic |
| CGGATATTCAGACGCAACGA+AGG | 0.561402 | 3.2:+63238374 | None:intergenic |
| TAATGGATTATAATTTGATG+AGG | 0.561590 | 3.2:+63237139 | None:intergenic |
| GTGGATGCATGGAGCTCAGA+TGG | 0.561990 | 3.2:-63237111 | MS.gene69296:CDS |
| ACCCCAGTGGAAGGTAAAAG+AGG | 0.562878 | 3.2:+63239497 | None:intergenic |
| ACATCATCCTTAGAGTCATT+AGG | 0.562946 | 3.2:+63238563 | None:intergenic |
| TCCTGATCTTCAGGCCAAAG+TGG | 0.568046 | 3.2:-63238322 | MS.gene69296:CDS |
| CCTGTGTGGGAACTAAGAAA+CGG | 0.577952 | 3.2:-63235840 | MS.gene69296:CDS |
| ATCTCCAGACTTCTATGCAA+GGG | 0.579812 | 3.2:-63236464 | MS.gene69296:intron |
| GCTTCAAGGTACTCCTTAGG+CGG | 0.582171 | 3.2:+63238074 | None:intergenic |
| AGATCTCTTTGGTTGATGCA+AGG | 0.584104 | 3.2:-63236800 | MS.gene69296:CDS |
| CATCGTTACTCCGATGAAGG+CGG | 0.584531 | 3.2:-63239668 | MS.gene69296:CDS |
| CTGAAGTGCTTCGATGATGG+GGG | 0.585163 | 3.2:+63238619 | None:intergenic |
| GTCACTGTATATATGGGAGA+AGG | 0.587116 | 3.2:-63236529 | MS.gene69296:CDS |
| TCAAATACCTCATTCCAAGA+AGG | 0.587279 | 3.2:+63235960 | None:intergenic |
| CATCTCCAGACTTCTATGCA+AGG | 0.588070 | 3.2:-63236465 | MS.gene69296:CDS |
| AAATTCCTTCAAGGTTTCTG+AGG | 0.588145 | 3.2:+63238142 | None:intergenic |
| AAACATTTGATAAGTGGCAC+AGG | 0.590787 | 3.2:+63238417 | None:intergenic |
| AAGAGGATTACCCCAGTGGA+AGG | 0.591185 | 3.2:+63239488 | None:intergenic |
| GTTCCATTACATTCCCGCGA+AGG | 0.594715 | 3.2:-63235807 | MS.gene69296:CDS |
| GGTAAACTTACATTCCATGA+AGG | 0.597062 | 3.2:+63238534 | None:intergenic |
| CGCCTTCATCGGAGTAACGA+TGG | 0.598173 | 3.2:+63239669 | None:intergenic |
| TTCTATCTTTAGCAAAACAG+TGG | 0.603639 | 3.2:-63237856 | MS.gene69296:intron |
| CGATGAAGATGATCTTAAGG+AGG | 0.606898 | 3.2:-63237830 | MS.gene69296:CDS |
| AAAGAAGTCCCTAGTTTGAG+AGG | 0.608524 | 3.2:-63237984 | MS.gene69296:CDS |
| AATATGTAATAATGTGACAA+TGG | 0.622860 | 3.2:+63238698 | None:intergenic |
| CCGTTTCTTAGTTCCCACAC+AGG | 0.623175 | 3.2:+63235840 | None:intergenic |
| CTGTATATATGGGAGAAGGA+TGG | 0.631132 | 3.2:-63236525 | MS.gene69296:CDS |
| ACAAACATGCTTACCTGTGT+GGG | 0.631770 | 3.2:-63235853 | MS.gene69296:CDS |
| TAAAGCTCCTTTATCTCCGG+CGG | 0.638010 | 3.2:+63239692 | None:intergenic |
| TGAATATGACATGTCTGAGA+AGG | 0.639315 | 3.2:-63235889 | MS.gene69296:CDS |
| GGAGGAAGATTCCGACGAAG+CGG | 0.646865 | 3.2:-63237809 | MS.gene69296:CDS |
| TTAGGTGATGAAGAAGCTTG+GGG | 0.654802 | 3.2:-63238008 | MS.gene69296:CDS |
| AATAGTGGAATGTCTCAAAG+TGG | 0.664523 | 3.2:-63237713 | MS.gene69296:CDS |
| GACAAACATGCTTACCTGTG+TGG | 0.665048 | 3.2:-63235854 | MS.gene69296:CDS |
| CCAGTGGAAGGTAAAAGAGG+AGG | 0.668421 | 3.2:+63239500 | None:intergenic |
| CCTGAAGATCAGGAGTAAGG+TGG | 0.674793 | 3.2:+63238331 | None:intergenic |
| GGAATGTTTAAAGCCAATGG+AGG | 0.677096 | 3.2:-63236779 | MS.gene69296:CDS |
| CATGCTGGGAAGCCTAAAGG+TGG | 0.677747 | 3.2:-63237736 | MS.gene69296:CDS |
| ATATTGCGAGTGTATCCGAA+AGG | 0.679225 | 3.2:-63237173 | MS.gene69296:CDS |
| GAAGTCCCTAGTTTGAGAGG+CGG | 0.688180 | 3.2:-63237981 | MS.gene69296:CDS |
| GTAAAAGAGGATTACCCCAG+TGG | 0.701192 | 3.2:+63239484 | None:intergenic |
| ATCATCGAAGCACTTCAGAG+AGG | 0.734048 | 3.2:-63238614 | MS.gene69296:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTAGATAAATCAATTT+TGG | + | chr3.2:63236543-63236562 | None:intergenic | 10.0% |
| !! | CAAATTATAATCCATTAATT+GGG | - | chr3.2:63238389-63238408 | MS.gene69296:CDS | 15.0% |
| !! | TCAAATAAAATAATTCATAC+AGG | + | chr3.2:63239112-63239131 | None:intergenic | 15.0% |
| !! | TCAAATTATAATCCATTAAT+TGG | - | chr3.2:63238388-63238407 | MS.gene69296:CDS | 15.0% |
| !! | TGTAACTCATAATATATATT+GGG | - | chr3.2:63236099-63236118 | MS.gene69296:intron | 15.0% |
| !! | TTGTAACTCATAATATATAT+TGG | - | chr3.2:63236098-63236117 | MS.gene69296:intron | 15.0% |
| !! | TTTGATTATGAGTTATTAAA+CGG | + | chr3.2:63238089-63238108 | None:intergenic | 15.0% |
| !!! | ATAATTTTTATGAACTATGT+TGG | - | chr3.2:63236728-63236747 | MS.gene69296:CDS | 15.0% |
| !!! | TAAGATTTAAGATGATTTAT+GGG | - | chr3.2:63239086-63239105 | MS.gene69296:intron | 15.0% |
| !! | AATATGTAATAATGTGACAA+TGG | + | chr3.2:63236827-63236846 | None:intergenic | 20.0% |
| !! | AATGTTGTATATAAATTGCA+AGG | - | chr3.2:63237598-63237617 | MS.gene69296:intron | 20.0% |
| !! | AGACTTGATTATAATTAACA+AGG | - | chr3.2:63238945-63238964 | MS.gene69296:intron | 20.0% |
| !! | GAATTACATTAAATGTAAAG+TGG | + | chr3.2:63236301-63236320 | None:intergenic | 20.0% |
| !! | TATCTCATATTTCTTTAATC+CGG | + | chr3.2:63238016-63238035 | None:intergenic | 20.0% |
| !! | TCAACTCTATAAATTATGTT+TGG | + | chr3.2:63236567-63236586 | None:intergenic | 20.0% |
| !!! | ATGATAAATTATTTTTGCTG+TGG | - | chr3.2:63238675-63238694 | MS.gene69296:CDS | 20.0% |
| !!! | ATTTAATTTAATAGCCAACA+AGG | + | chr3.2:63236063-63236082 | None:intergenic | 20.0% |
| !!! | CTAAGATTTAAGATGATTTA+TGG | - | chr3.2:63239085-63239104 | MS.gene69296:intron | 20.0% |
| !!! | TAATGGATTATAATTTGATG+AGG | + | chr3.2:63238386-63238405 | None:intergenic | 20.0% |
| !!! | TGATAAATTATTTTTGCTGT+GGG | - | chr3.2:63238676-63238695 | MS.gene69296:CDS | 20.0% |
| !!! | TTTTCATAACAGTATCAAAA+GGG | + | chr3.2:63239513-63239532 | None:intergenic | 20.0% |
| !!! | TTTTTCATAACAGTATCAAA+AGG | + | chr3.2:63239514-63239533 | None:intergenic | 20.0% |
| ! | AATAAGTGATAACTTCTCTT+CGG | - | chr3.2:63239428-63239447 | MS.gene69296:intron | 25.0% |
| ! | AATATATGGATGCTATAACT+TGG | + | chr3.2:63239370-63239389 | None:intergenic | 25.0% |
| ! | AATGTAAAGTGGTTTATGTT+TGG | + | chr3.2:63236290-63236309 | None:intergenic | 25.0% |
| ! | AATTAGGTCACTGTATATAT+GGG | - | chr3.2:63238987-63239006 | MS.gene69296:intron | 25.0% |
| ! | ATGAGATAAATATTTGTCCT+TGG | - | chr3.2:63238028-63238047 | MS.gene69296:CDS | 25.0% |
| ! | ATTATAATCCATTAATTGGG+TGG | - | chr3.2:63238392-63238411 | MS.gene69296:CDS | 25.0% |
| ! | CATTTATATTCAATCAGCTT+TGG | - | chr3.2:63238237-63238256 | MS.gene69296:intron | 25.0% |
| ! | GGAAGAGTTTGAAAAATATA+TGG | + | chr3.2:63239384-63239403 | None:intergenic | 25.0% |
| ! | GGCTACTAATTGAAAATTTA+GGG | - | chr3.2:63238512-63238531 | MS.gene69296:intron | 25.0% |
| ! | GTTGTCATTAGTAAAATACA+TGG | + | chr3.2:63237052-63237071 | None:intergenic | 25.0% |
| ! | TAATTAGGTCACTGTATATA+TGG | - | chr3.2:63238986-63239005 | MS.gene69296:intron | 25.0% |
| ! | TAATTGATAAACTCTTATGC+AGG | - | chr3.2:63239471-63239490 | MS.gene69296:intron | 25.0% |
| ! | TCACATTATTACATATTCAC+TGG | - | chr3.2:63236830-63236849 | MS.gene69296:intron | 25.0% |
| ! | TGTTGGAGATATAATTCAAA+CGG | + | chr3.2:63237012-63237031 | None:intergenic | 25.0% |
| ! | TTTAATCCGGTAACAATAAA+AGG | + | chr3.2:63238003-63238022 | None:intergenic | 25.0% |
| ! | TTTCCAACTTGACAAAATAA+CGG | - | chr3.2:63238125-63238144 | MS.gene69296:CDS | 25.0% |
| !! | GTAACCATCTAAAATTTGAA+CGG | + | chr3.2:63237328-63237347 | None:intergenic | 25.0% |
| !! | TAACCATCTAAAATTTGAAC+GGG | + | chr3.2:63237327-63237346 | None:intergenic | 25.0% |
| !! | TAGATAAAGTGATTTGTGTT+TGG | - | chr3.2:63236411-63236430 | MS.gene69296:intron | 25.0% |
| !! | TATAATTTTACCTGTTGCAT+TGG | - | chr3.2:63237964-63237983 | MS.gene69296:CDS | 25.0% |
| !! | TCTAATTTTGTATGTGAGAT+TGG | - | chr3.2:63237624-63237643 | MS.gene69296:intron | 25.0% |
| !! | TGCTTTTCTTACTCTTAATT+AGG | - | chr3.2:63238971-63238990 | MS.gene69296:intron | 25.0% |
| !! | TTAATGGACGAAAATGATAT+CGG | - | chr3.2:63238174-63238193 | MS.gene69296:CDS | 25.0% |
| !! | TTCAATCCTTTTATTGTTAC+CGG | - | chr3.2:63237994-63238013 | MS.gene69296:CDS | 25.0% |
| !! | TTTTGTCTTGAATTTCTCTT+TGG | - | chr3.2:63238579-63238598 | MS.gene69296:CDS | 25.0% |
| !!! | AGAATCAATTCTAGAATCAA+AGG | - | chr3.2:63236477-63236496 | MS.gene69296:CDS | 25.0% |
| !!! | ATCCTTTTTTTAAGTGAATC+AGG | + | chr3.2:63237412-63237431 | None:intergenic | 25.0% |
| !!! | TTCACTTTTAAGTGTATGTT+TGG | - | chr3.2:63236318-63236337 | MS.gene69296:intron | 25.0% |
| AATCAAAGGCTACAAATAGT+AGG | - | chr3.2:63236491-63236510 | MS.gene69296:CDS | 30.0% | |
| ACAAAATGATGCAATCTTAC+AGG | - | chr3.2:63237070-63237089 | MS.gene69296:intron | 30.0% | |
| ACAATGGTAAACTCATATCT+TGG | + | chr3.2:63236811-63236830 | None:intergenic | 30.0% | |
| AGCTAAAGAAGAAAAGGAAA+AGG | - | chr3.2:63237468-63237487 | MS.gene69296:intron | 30.0% | |
| ATGAATTCTCGTCAAATTGT+TGG | + | chr3.2:63237029-63237048 | None:intergenic | 30.0% | |
| ATTAAGCTGAAAACAGCTTA+TGG | + | chr3.2:63239201-63239220 | None:intergenic | 30.0% | |
| CAAAGTCAACAGATAATAGT+TGG | - | chr3.2:63239536-63239555 | MS.gene69296:CDS | 30.0% | |
| CAAATGTTTGACGTCTATTA+AGG | - | chr3.2:63237119-63237138 | MS.gene69296:CDS | 30.0% | |
| CACCTGATTCACTTAAAAAA+AGG | - | chr3.2:63237407-63237426 | MS.gene69296:intron | 30.0% | |
| CATATGGAAAAGAAATTGTC+AGG | - | chr3.2:63237892-63237911 | MS.gene69296:intron | 30.0% | |
| CGGCTACTAATTGAAAATTT+AGG | - | chr3.2:63238511-63238530 | MS.gene69296:intron | 30.0% | |
| GAGTGATTGAATTGGATATA+TGG | - | chr3.2:63236936-63236955 | MS.gene69296:intron | 30.0% | |
| GGTCATAATTCATATCTAAC+TGG | - | chr3.2:63236851-63236870 | MS.gene69296:intron | 30.0% | |
| TAAAGAAGAAAAGGAAAAGG+AGG | - | chr3.2:63237471-63237490 | MS.gene69296:intron | 30.0% | |
| TAAATATTTGTCCTTGGCAA+TGG | - | chr3.2:63238034-63238053 | MS.gene69296:CDS | 30.0% | |
| TAACTTGGAACATAACTGTT+TGG | + | chr3.2:63239355-63239374 | None:intergenic | 30.0% | |
| TAGATGGTTACTCAAACATT+TGG | - | chr3.2:63237337-63237356 | MS.gene69296:intron | 30.0% | |
| TATATAACAAGAAACCTGTG+AGG | - | chr3.2:63238481-63238500 | MS.gene69296:intron | 30.0% | |
| TTCATATCTAATAGACTGCA+AGG | + | chr3.2:63239405-63239424 | None:intergenic | 30.0% | |
| TTCTATCTTTAGCAAAACAG+TGG | - | chr3.2:63237666-63237685 | MS.gene69296:CDS | 30.0% | |
| ! | AACCATCTAAAATTTGAACG+GGG | + | chr3.2:63237326-63237345 | None:intergenic | 30.0% |
| ! | ACCTTCAAAGTAGTTTTTGA+TGG | + | chr3.2:63238848-63238867 | None:intergenic | 30.0% |
| ! | ATTTTGTATGTGAGATTGGT+TGG | - | chr3.2:63237628-63237647 | MS.gene69296:intron | 30.0% |
| ! | CCAGTTTTCAATAGAAAATC+AGG | + | chr3.2:63238788-63238807 | None:intergenic | 30.0% |
| ! | CCTGATTTTCTATTGAAAAC+TGG | - | chr3.2:63238785-63238804 | MS.gene69296:intron | 30.0% |
| ! | GTAGACAAAATTGGTTTAAG+AGG | - | chr3.2:63236187-63236206 | MS.gene69296:intron | 30.0% |
| ! | TCTTCTAGTGTTATTACAAC+CGG | + | chr3.2:63237171-63237190 | None:intergenic | 30.0% |
| ! | TTGAGTAGTGACTTTTACAA+GGG | - | chr3.2:63238890-63238909 | MS.gene69296:intron | 30.0% |
| ! | TTTGAGTAGTGACTTTTACA+AGG | - | chr3.2:63238889-63238908 | MS.gene69296:intron | 30.0% |
| !! | ATCTACATCTCACTTTTAGT+CGG | + | chr3.2:63236396-63236415 | None:intergenic | 30.0% |
| !! | TTATAGAGTTGAGTTGCTTT+TGG | - | chr3.2:63236575-63236594 | MS.gene69296:intron | 30.0% |
| !! | TTTCCGTTATTTTGTCAAGT+TGG | + | chr3.2:63238131-63238150 | None:intergenic | 30.0% |
| !!! | TAAATTATTTTTGCTGTGGG+TGG | - | chr3.2:63238679-63238698 | MS.gene69296:CDS | 30.0% |
| AAACATTTGATAAGTGGCAC+AGG | + | chr3.2:63237108-63237127 | None:intergenic | 35.0% | |
| AAATTCCTTCAAGGTTTCTG+AGG | + | chr3.2:63237383-63237402 | None:intergenic | 35.0% | |
| AACCTATCTTAGAGAGCTTA+TGG | + | chr3.2:63239225-63239244 | None:intergenic | 35.0% | |
| AAGATCTCTACGATCAATGA+TGG | + | chr3.2:63235960-63235979 | None:intergenic | 35.0% | |
| AATAGCCAACAAGGTAAAAG+AGG | + | chr3.2:63236054-63236073 | None:intergenic | 35.0% | |
| AATGTCTTGATACAGCTGAA+AGG | + | chr3.2:63238632-63238651 | None:intergenic | 35.0% | |
| ACATCATCCTTAGAGTCATT+AGG | + | chr3.2:63236962-63236981 | None:intergenic | 35.0% | |
| ACTATGTTGGTGTGTGATAA+TGG | - | chr3.2:63236741-63236760 | MS.gene69296:CDS | 35.0% | |
| AGGATCGAAAACCTCATTAT+TGG | + | chr3.2:63238813-63238832 | None:intergenic | 35.0% | |
| AGGTGAAAGAAATTCCTTCA+AGG | + | chr3.2:63237392-63237411 | None:intergenic | 35.0% | |
| AGGTGTTAGAGTGATTGAAT+TGG | - | chr3.2:63236928-63236947 | MS.gene69296:intron | 35.0% | |
| ATAATAGTTGGTTGCCTTCT+TGG | - | chr3.2:63239548-63239567 | MS.gene69296:CDS | 35.0% | |
| CCTTGAAGCTAAAGAAGAAA+AGG | - | chr3.2:63237462-63237481 | MS.gene69296:intron | 35.0% | |
| GACGTCAAACATTTGATAAG+TGG | + | chr3.2:63237114-63237133 | None:intergenic | 35.0% | |
| GCCATCAAAAACTACTTTGA+AGG | - | chr3.2:63238844-63238863 | MS.gene69296:intron | 35.0% | |
| GGATCGAAAACCTCATTATT+GGG | + | chr3.2:63238812-63238831 | None:intergenic | 35.0% | |
| GGTAAACTTACATTCCATGA+AGG | + | chr3.2:63236991-63237010 | None:intergenic | 35.0% | |
| TATATGGCCTAATGACTCTA+AGG | - | chr3.2:63236952-63236971 | MS.gene69296:intron | 35.0% | |
| TCAAATACCTCATTCCAAGA+AGG | + | chr3.2:63239565-63239584 | None:intergenic | 35.0% | |
| TCTTGAATTTCTCTTTGGTG+AGG | - | chr3.2:63238584-63238603 | MS.gene69296:CDS | 35.0% | |
| TGAATATGACATGTCTGAGA+AGG | - | chr3.2:63239633-63239652 | MS.gene69296:CDS | 35.0% | |
| TGATAAACTCTTATGCAGGT+TGG | - | chr3.2:63239475-63239494 | MS.gene69296:intron | 35.0% | |
| TGTCGATGAAGATGATCTTA+AGG | - | chr3.2:63237689-63237708 | MS.gene69296:CDS | 35.0% | |
| TGTTGTATTTATCTCCTTCG+CGG | + | chr3.2:63239732-63239751 | None:intergenic | 35.0% | |
| TTTAGGTGATGAAGAAGCTT+GGG | - | chr3.2:63237513-63237532 | MS.gene69296:intron | 35.0% | |
| ! | AATAGTGGAATGTCTCAAAG+TGG | - | chr3.2:63237809-63237828 | MS.gene69296:CDS | 35.0% |
| ! | ACGAAAACAGCTTTTAAGCA+AGG | - | chr3.2:63239245-63239264 | MS.gene69296:intron | 35.0% |
| ! | ATGTCTGAGAAGGATGATTT+TGG | - | chr3.2:63239643-63239662 | MS.gene69296:CDS | 35.0% |
| ! | CAAAAACTACTTTGAAGGTG+AGG | - | chr3.2:63238849-63238868 | MS.gene69296:intron | 35.0% |
| ! | CAAGGAATGTTTAAAGCCAA+TGG | - | chr3.2:63238740-63238759 | MS.gene69296:intron | 35.0% |
| ! | CTGTTTCTTTGTGTGATTTC+AGG | - | chr3.2:63236781-63236800 | MS.gene69296:CDS | 35.0% |
| ! | GCTTAATTGCTATTCATGCT+GGG | - | chr3.2:63237772-63237791 | MS.gene69296:CDS | 35.0% |
| ! | GTAATCCTCTTTTACCTTGT+TGG | - | chr3.2:63236046-63236065 | MS.gene69296:intron | 35.0% |
| ! | TGTAGTCATCTGATGCATTT+TGG | + | chr3.2:63237749-63237768 | None:intergenic | 35.0% |
| ! | TTTGATGGCAAATGAGCTTT+AGG | + | chr3.2:63238833-63238852 | None:intergenic | 35.0% |
| !! | CCTTTTCTTCTTTAGCTTCA+AGG | + | chr3.2:63237465-63237484 | None:intergenic | 35.0% |
| !! | GCACTTGAAAAGCACTTATA+AGG | - | chr3.2:63236597-63236616 | MS.gene69296:intron | 35.0% |
| !! | TTCCATAAGCTCTCTAAGAT+AGG | - | chr3.2:63239220-63239239 | MS.gene69296:intron | 35.0% |
| AAAGAAGTCCCTAGTTTGAG+AGG | - | chr3.2:63237538-63237557 | MS.gene69296:intron | 40.0% | |
| ACAAACATGCTTACCTGTGT+GGG | - | chr3.2:63239669-63239688 | MS.gene69296:CDS | 40.0% | |
| ATATTGCGAGTGTATCCGAA+AGG | - | chr3.2:63238349-63238368 | MS.gene69296:CDS | 40.0% | |
| ATCTCCAGACTTCTATGCAA+GGG | - | chr3.2:63239058-63239077 | MS.gene69296:intron | 40.0% | |
| ATGCCATCTAAGAAGACAGT+CGG | + | chr3.2:63238065-63238084 | None:intergenic | 40.0% | |
| CAAGCTTCTTCATCACCTAA+AGG | + | chr3.2:63237514-63237533 | None:intergenic | 40.0% | |
| CATTCCACTATTCCACCTTT+AGG | + | chr3.2:63237801-63237820 | None:intergenic | 40.0% | |
| CGAAACGCAGAAACAAACAT+AGG | + | chr3.2:63236166-63236185 | None:intergenic | 40.0% | |
| CGATGAAGATGATCTTAAGG+AGG | - | chr3.2:63237692-63237711 | MS.gene69296:CDS | 40.0% | |
| CGGTACTATAGCTGATTACA+AGG | - | chr3.2:63237561-63237580 | MS.gene69296:intron | 40.0% | |
| CTCAAATCTCAAAGCCGTAA+AGG | + | chr3.2:63238875-63238894 | None:intergenic | 40.0% | |
| CTGTATATATGGGAGAAGGA+TGG | - | chr3.2:63238997-63239016 | MS.gene69296:intron | 40.0% | |
| CTTAGACGTCTCACTTTATC+AGG | + | chr3.2:63237837-63237856 | None:intergenic | 40.0% | |
| CTTTAGGTGATGAAGAAGCT+TGG | - | chr3.2:63237512-63237531 | MS.gene69296:intron | 40.0% | |
| GAAAACTGGTCCCAATAATG+AGG | - | chr3.2:63238799-63238818 | MS.gene69296:intron | 40.0% | |
| GAAAAGGCTGCTGAAACATA+TGG | - | chr3.2:63237876-63237895 | MS.gene69296:intron | 40.0% | |
| GATGATGTTGATGTCCTTCA+TGG | - | chr3.2:63236974-63236993 | MS.gene69296:intron | 40.0% | |
| GATGGTTGCATTTAACATGC+AGG | - | chr3.2:63238429-63238448 | MS.gene69296:CDS | 40.0% | |
| GTCACTGTATATATGGGAGA+AGG | - | chr3.2:63238993-63239012 | MS.gene69296:intron | 40.0% | |
| GTCTAGAGACACTTGAATGA+CGG | + | chr3.2:63238929-63238948 | None:intergenic | 40.0% | |
| GTTGTATTTATCTCCTTCGC+GGG | + | chr3.2:63239731-63239750 | None:intergenic | 40.0% | |
| TCAACACTCAAGTGCATGTT+TGG | + | chr3.2:63236687-63236706 | None:intergenic | 40.0% | |
| TCACAGAAGAGAAAGCCTTT+AGG | - | chr3.2:63237496-63237515 | MS.gene69296:intron | 40.0% | |
| TGAAGATGATCTTAAGGAGG+AGG | - | chr3.2:63237695-63237714 | MS.gene69296:CDS | 40.0% | |
| TGGACGAAAATGATATCGGA+CGG | - | chr3.2:63238178-63238197 | MS.gene69296:CDS | 40.0% | |
| TGGTAAAGCTCCTTTATCTC+CGG | + | chr3.2:63235836-63235855 | None:intergenic | 40.0% | |
| TTAGGTGATGAAGAAGCTTG+GGG | - | chr3.2:63237514-63237533 | MS.gene69296:intron | 40.0% | |
| TTGATCCTCTGATTGTTGAC+AGG | - | chr3.2:63238311-63238330 | MS.gene69296:intron | 40.0% | |
| ! | AGATCTCTTTGGTTGATGCA+AGG | - | chr3.2:63238722-63238741 | MS.gene69296:CDS | 40.0% |
| ! | AGCCCCGTTCAAATTTTAGA+TGG | - | chr3.2:63237321-63237340 | MS.gene69296:intron | 40.0% |
| ! | CGCTTAATTGCTATTCATGC+TGG | - | chr3.2:63237771-63237790 | MS.gene69296:CDS | 40.0% |
| ! | GCGTTTCGAGTAGACAAAAT+TGG | - | chr3.2:63236178-63236197 | MS.gene69296:intron | 40.0% |
| ! | GGAATGTTTAAAGCCAATGG+AGG | - | chr3.2:63238743-63238762 | MS.gene69296:intron | 40.0% |
| ! | TCTGAGAAGGATGATTTTGG+TGG | - | chr3.2:63239646-63239665 | MS.gene69296:CDS | 40.0% |
| ! | TTAGCTTCAAGGTACTCCTT+AGG | + | chr3.2:63237454-63237473 | None:intergenic | 40.0% |
| ! | TTTAAAGCCAATGGAGGATG+CGG | - | chr3.2:63238749-63238768 | MS.gene69296:intron | 40.0% |
| ! | TTTTCAATTAGTAGCCGTGC+TGG | + | chr3.2:63238508-63238527 | None:intergenic | 40.0% |
| !! | CTTTGGAACAAACACATTGC+AGG | - | chr3.2:63238254-63238273 | MS.gene69296:intron | 40.0% |
| !! | GTGTATGTTTGGTTCTGCTT+TGG | - | chr3.2:63236329-63236348 | MS.gene69296:intron | 40.0% |
| AACAAAACCGCATCCTCCAT+TGG | + | chr3.2:63238759-63238778 | None:intergenic | 45.0% | |
| AAGTGAGTCACAGCTCGAAA+AGG | - | chr3.2:63237860-63237879 | MS.gene69296:intron | 45.0% | |
| ACCGAAAAAACCCAGCGTAT+CGG | - | chr3.2:63235802-63235821 | MS.gene69296:CDS | 45.0% | |
| AGGGTTATGGGAGATCTCTT+TGG | - | chr3.2:63238711-63238730 | MS.gene69296:CDS | 45.0% | |
| ATAGTACCGCCTCTCAAACT+AGG | + | chr3.2:63237550-63237569 | None:intergenic | 45.0% | |
| ATTCATGCTGGGAAGCCTAA+AGG | - | chr3.2:63237783-63237802 | MS.gene69296:CDS | 45.0% | |
| CAAGTGCATGTTTGGATCTG+CGG | + | chr3.2:63236679-63236698 | None:intergenic | 45.0% | |
| CATACCCTTGCATAGAAGTC+TGG | + | chr3.2:63239065-63239084 | None:intergenic | 45.0% | |
| CATCTCCAGACTTCTATGCA+AGG | - | chr3.2:63239057-63239076 | MS.gene69296:intron | 45.0% | |
| CCATGCATCCACCCAATTAA+TGG | + | chr3.2:63238403-63238422 | None:intergenic | 45.0% | |
| CCATTAATTGGGTGGATGCA+TGG | - | chr3.2:63238400-63238419 | MS.gene69296:CDS | 45.0% | |
| CCTCAATCAGAAAGCTTCTG+AGG | + | chr3.2:63235898-63235917 | None:intergenic | 45.0% | |
| CCTCAGAAGCTTTCTGATTG+AGG | - | chr3.2:63235895-63235914 | MS.gene69296:CDS | 45.0% | |
| CCTGTGTGGGAACTAAGAAA+CGG | - | chr3.2:63239682-63239701 | MS.gene69296:CDS | 45.0% | |
| CTAACTAACCTGAGCCACTT+TGG | + | chr3.2:63237217-63237236 | None:intergenic | 45.0% | |
| CTTCGTTGCGTCTGAATATC+CGG | - | chr3.2:63237149-63237168 | MS.gene69296:CDS | 45.0% | |
| GAAGCCTAAAGGTGGAATAG+TGG | - | chr3.2:63237794-63237813 | MS.gene69296:CDS | 45.0% | |
| GAATCAAGAGCCAATGCAAC+AGG | + | chr3.2:63237977-63237996 | None:intergenic | 45.0% | |
| GACAAACATGCTTACCTGTG+TGG | - | chr3.2:63239668-63239687 | MS.gene69296:CDS | 45.0% | |
| GAGGTAATGCGTGTACCTTT+CGG | + | chr3.2:63238367-63238386 | None:intergenic | 45.0% | |
| GTAAAAGAGGATTACCCCAG+TGG | + | chr3.2:63236041-63236060 | None:intergenic | 45.0% | |
| GTGAACCTGTCAACAATCAG+AGG | + | chr3.2:63238319-63238338 | None:intergenic | 45.0% | |
| TAAAGCTCCTTTATCTCCGG+CGG | + | chr3.2:63235833-63235852 | None:intergenic | 45.0% | |
| TACCATCGTTACTCCGATGA+AGG | - | chr3.2:63235851-63235870 | MS.gene69296:CDS | 45.0% | |
| TAGTACCGCCTCTCAAACTA+GGG | + | chr3.2:63237549-63237568 | None:intergenic | 45.0% | |
| TCCTACCTCAGAAACCTTGA+AGG | - | chr3.2:63237375-63237394 | MS.gene69296:intron | 45.0% | |
| TGAATTCCCGCTTTCTGTTC+CGG | - | chr3.2:63239582-63239601 | MS.gene69296:CDS | 45.0% | |
| TGGTTCTTTGGCAGGGTTAT+GGG | - | chr3.2:63238699-63238718 | MS.gene69296:CDS | 45.0% | |
| TTGGTTGCCTTCTTGGAATG+AGG | - | chr3.2:63239555-63239574 | MS.gene69296:CDS | 45.0% | |
| ! | AGTGGCTCAGGTTAGTTAGT+TGG | - | chr3.2:63237218-63237237 | MS.gene69296:intron | 45.0% |
| ! | ATCATCGAAGCACTTCAGAG+AGG | - | chr3.2:63236908-63236927 | MS.gene69296:intron | 45.0% |
| ! | CTCCTCTTTTACCTTCCACT+GGG | - | chr3.2:63236023-63236042 | MS.gene69296:CDS | 45.0% |
| ! | CTTATGCAGGTTGGAATTGC+TGG | - | chr3.2:63239484-63239503 | MS.gene69296:intron | 45.0% |
| ! | CTTTGAAGGTGAGGCCTTTA+CGG | - | chr3.2:63238858-63238877 | MS.gene69296:intron | 45.0% |
| ! | TCACCGACTGTCTTCTTAGA+TGG | - | chr3.2:63238059-63238078 | MS.gene69296:CDS | 45.0% |
| ! | TCCTCTTTTACCTTCCACTG+GGG | - | chr3.2:63236024-63236043 | MS.gene69296:CDS | 45.0% |
| ! | TCTGAAGTGCTTCGATGATG+GGG | + | chr3.2:63236907-63236926 | None:intergenic | 45.0% |
| !! | CTCTGAAGTGCTTCGATGAT+GGG | + | chr3.2:63236908-63236927 | None:intergenic | 45.0% |
| !! | TCCTTCAAGGTTTCTGAGGT+AGG | + | chr3.2:63237379-63237398 | None:intergenic | 45.0% |
| !! | TCTCTGAAGTGCTTCGATGA+TGG | + | chr3.2:63236909-63236928 | None:intergenic | 45.0% |
| !! | TTTTGCTGTGGGTGGTTCTT+TGG | - | chr3.2:63238687-63238706 | MS.gene69296:CDS | 45.0% |
| !!! | TCCGATACGCTGGGTTTTTT+CGG | + | chr3.2:63235806-63235825 | None:intergenic | 45.0% |
| !! | AGTAATTAAATATTATTTAA+TGG | - | chr3.2:63238158-63238177 | MS.gene69296:CDS | 5.0% |
| !! | TATTAAATTAAATTTGTAAA+TGG | - | chr3.2:63236070-63236089 | MS.gene69296:intron | 5.0% |
| AAGAGGATTACCCCAGTGGA+AGG | + | chr3.2:63236037-63236056 | None:intergenic | 50.0% | |
| ACCCCAGTGGAAGGTAAAAG+AGG | + | chr3.2:63236028-63236047 | None:intergenic | 50.0% | |
| AGATTCCGACGAAGCGGAAA+AGG | - | chr3.2:63237719-63237738 | MS.gene69296:CDS | 50.0% | |
| AGTCGGTGAAACCATTGCCA+AGG | + | chr3.2:63238048-63238067 | None:intergenic | 50.0% | |
| ATCGTTACTCCGATGAAGGC+GGG | - | chr3.2:63235855-63235874 | MS.gene69296:CDS | 50.0% | |
| CATATCAACCAAGCCGCCTA+AGG | - | chr3.2:63237435-63237454 | MS.gene69296:intron | 50.0% | |
| CATCGTTACTCCGATGAAGG+CGG | - | chr3.2:63235854-63235873 | MS.gene69296:CDS | 50.0% | |
| CCACCTTACTCCTGATCTTC+AGG | - | chr3.2:63237191-63237210 | MS.gene69296:CDS | 50.0% | |
| CCAGTGGAAGGTAAAAGAGG+AGG | + | chr3.2:63236025-63236044 | None:intergenic | 50.0% | |
| CCGTTTCTTAGTTCCCACAC+AGG | + | chr3.2:63239685-63239704 | None:intergenic | 50.0% | |
| CCTGAAGATCAGGAGTAAGG+TGG | + | chr3.2:63237194-63237213 | None:intergenic | 50.0% | |
| CGGATATTCAGACGCAACGA+AGG | + | chr3.2:63237151-63237170 | None:intergenic | 50.0% | |
| GAAAAAACCCAGCGTATCGG+AGG | - | chr3.2:63235805-63235824 | MS.gene69296:CDS | 50.0% | |
| GAAGTCCCTAGTTTGAGAGG+CGG | - | chr3.2:63237541-63237560 | MS.gene69296:intron | 50.0% | |
| GACGTGTTTGCGTTGCTCTT+GGG | - | chr3.2:63236225-63236244 | MS.gene69296:intron | 50.0% | |
| GTGGTTCTTTGGCAGGGTTA+TGG | - | chr3.2:63238698-63238717 | MS.gene69296:CDS | 50.0% | |
| GTTCCATTACATTCCCGCGA+AGG | - | chr3.2:63239715-63239734 | MS.gene69296:CDS | 50.0% | |
| TCCTGATCTTCAGGCCAAAG+TGG | - | chr3.2:63237200-63237219 | MS.gene69296:intron | 50.0% | |
| TCTCCTTCGCGGGAATGTAA+TGG | + | chr3.2:63239721-63239740 | None:intergenic | 50.0% | |
| TGACGTGTTTGCGTTGCTCT+TGG | - | chr3.2:63236224-63236243 | MS.gene69296:intron | 50.0% | |
| TGGCCTGAAGATCAGGAGTA+AGG | + | chr3.2:63237197-63237216 | None:intergenic | 50.0% | |
| TGTCATGATCCCGCCTTCAT+CGG | + | chr3.2:63235867-63235886 | None:intergenic | 50.0% | |
| ! | CCTCCTCTTTTACCTTCCAC+TGG | - | chr3.2:63236022-63236041 | MS.gene69296:CDS | 50.0% |
| ! | CTGAAGTGCTTCGATGATGG+GGG | + | chr3.2:63236906-63236925 | None:intergenic | 50.0% |
| ! | GCTTCAAGGTACTCCTTAGG+CGG | + | chr3.2:63237451-63237470 | None:intergenic | 50.0% |
| CATGCTGGGAAGCCTAAAGG+TGG | - | chr3.2:63237786-63237805 | MS.gene69296:CDS | 55.0% | |
| CGCCTTCATCGGAGTAACGA+TGG | + | chr3.2:63235856-63235875 | None:intergenic | 55.0% | |
| CTGTGGGTGGTTCTTTGGCA+GGG | - | chr3.2:63238692-63238711 | MS.gene69296:CDS | 55.0% | |
| GAAACCTGTGAGGTCCAGCA+CGG | - | chr3.2:63238491-63238510 | MS.gene69296:intron | 55.0% | |
| GGAGGAAGATTCCGACGAAG+CGG | - | chr3.2:63237713-63237732 | MS.gene69296:CDS | 55.0% | |
| GTGGATGCATGGAGCTCAGA+TGG | - | chr3.2:63238411-63238430 | MS.gene69296:CDS | 55.0% | |
| TCTTCAGGCCAAAGTGGCTC+AGG | - | chr3.2:63237206-63237225 | MS.gene69296:intron | 55.0% | |
| ! | AAGGTACTCCTTAGGCGGCT+TGG | + | chr3.2:63237446-63237465 | None:intergenic | 55.0% |
| ! | GCCACTTTGGCCTGAAGATC+AGG | + | chr3.2:63237204-63237223 | None:intergenic | 55.0% |
| CCAGCTCCGGAACAGAAAGC+GGG | + | chr3.2:63239591-63239610 | None:intergenic | 60.0% | |
| GCCAGCTCCGGAACAGAAAG+CGG | + | chr3.2:63239592-63239611 | None:intergenic | 60.0% | |
| GCTGTGGGTGGTTCTTTGGC+AGG | - | chr3.2:63238691-63238710 | MS.gene69296:CDS | 60.0% | |
| ! | GCGTGCCTTTTCCGCTTCGT+CGG | + | chr3.2:63237727-63237746 | None:intergenic | 60.0% |
| ATGCGAAGCAGCGCCAGCTC+CGG | + | chr3.2:63239604-63239623 | None:intergenic | 65.0% | |
| CCCGCTTTCTGTTCCGGAGC+TGG | - | chr3.2:63239588-63239607 | MS.gene69296:CDS | 65.0% | |
| GTAGCCGTGCTGGACCTCAC+AGG | + | chr3.2:63238498-63238517 | None:intergenic | 65.0% | |
| !! | GGAGGCACCGCCGGAGATAA+AGG | - | chr3.2:63235823-63235842 | MS.gene69296:CDS | 65.0% |
| GGCGGTGCCTCCGATACGCT+GGG | + | chr3.2:63235815-63235834 | None:intergenic | 70.0% | |
| !! | CAGCGTATCGGAGGCACCGC+CGG | - | chr3.2:63235814-63235833 | MS.gene69296:CDS | 70.0% |
| CGGCGGTGCCTCCGATACGC+TGG | + | chr3.2:63235816-63235835 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 63235791 | 63239753 | 63235791 | ID=MS.gene69296 |
| chr3.2 | mRNA | 63235791 | 63239753 | 63235791 | ID=MS.gene69296.t1;Parent=MS.gene69296 |
| chr3.2 | exon | 63239499 | 63239753 | 63239499 | ID=MS.gene69296.t1.exon1;Parent=MS.gene69296.t1 |
| chr3.2 | CDS | 63239499 | 63239753 | 63239499 | ID=cds.MS.gene69296.t1;Parent=MS.gene69296.t1 |
| chr3.2 | exon | 63238545 | 63238741 | 63238545 | ID=MS.gene69296.t1.exon2;Parent=MS.gene69296.t1 |
| chr3.2 | CDS | 63238545 | 63238741 | 63238545 | ID=cds.MS.gene69296.t1;Parent=MS.gene69296.t1 |
| chr3.2 | exon | 63238317 | 63238452 | 63238317 | ID=MS.gene69296.t1.exon3;Parent=MS.gene69296.t1 |
| chr3.2 | CDS | 63238317 | 63238452 | 63238317 | ID=cds.MS.gene69296.t1;Parent=MS.gene69296.t1 |
| chr3.2 | exon | 63237962 | 63238204 | 63237962 | ID=MS.gene69296.t1.exon4;Parent=MS.gene69296.t1 |
| chr3.2 | CDS | 63237962 | 63238204 | 63237962 | ID=cds.MS.gene69296.t1;Parent=MS.gene69296.t1 |
| chr3.2 | exon | 63237631 | 63237866 | 63237631 | ID=MS.gene69296.t1.exon5;Parent=MS.gene69296.t1 |
| chr3.2 | CDS | 63237631 | 63237866 | 63237631 | ID=cds.MS.gene69296.t1;Parent=MS.gene69296.t1 |
| chr3.2 | exon | 63237094 | 63237211 | 63237094 | ID=MS.gene69296.t1.exon6;Parent=MS.gene69296.t1 |
| chr3.2 | CDS | 63237094 | 63237211 | 63237094 | ID=cds.MS.gene69296.t1;Parent=MS.gene69296.t1 |
| chr3.2 | exon | 63236679 | 63236831 | 63236679 | ID=MS.gene69296.t1.exon7;Parent=MS.gene69296.t1 |
| chr3.2 | CDS | 63236679 | 63236831 | 63236679 | ID=cds.MS.gene69296.t1;Parent=MS.gene69296.t1 |
| chr3.2 | exon | 63236465 | 63236551 | 63236465 | ID=MS.gene69296.t1.exon8;Parent=MS.gene69296.t1 |
| chr3.2 | CDS | 63236465 | 63236551 | 63236465 | ID=cds.MS.gene69296.t1;Parent=MS.gene69296.t1 |
| chr3.2 | exon | 63235791 | 63236051 | 63235791 | ID=MS.gene69296.t1.exon9;Parent=MS.gene69296.t1 |
| chr3.2 | CDS | 63235791 | 63236051 | 63235791 | ID=cds.MS.gene69296.t1;Parent=MS.gene69296.t1 |
| Gene Sequence |
| Protein sequence |
