Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64700.t1 | XP_003612071.2 | 99 | 497 | 5 | 0 | 1 | 497 | 7 | 503 | 1.10E-256 | 895.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64700.t1 | Q9FN75 | 55.1 | 459 | 186 | 6 | 1 | 445 | 7 | 459 | 1.5e-139 | 497.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64700.t1 | G7KF09 | 99.0 | 497 | 5 | 0 | 1 | 497 | 7 | 503 | 7.6e-257 | 895.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049181 | MS.gene64700 | 0.861216 | 1.20E-63 | -1.69E-46 |
MS.gene049182 | MS.gene64700 | 0.837004 | 6.71E-57 | -1.69E-46 |
MS.gene049281 | MS.gene64700 | 0.803701 | 3.07E-49 | -1.69E-46 |
MS.gene050493 | MS.gene64700 | 0.80938 | 1.95E-50 | -1.69E-46 |
MS.gene050504 | MS.gene64700 | -0.807531 | 4.83E-50 | -1.69E-46 |
MS.gene050612 | MS.gene64700 | -0.801401 | 9.16E-49 | -1.69E-46 |
MS.gene050832 | MS.gene64700 | 0.800567 | 1.36E-48 | -1.69E-46 |
MS.gene050986 | MS.gene64700 | -0.803861 | 2.85E-49 | -1.69E-46 |
MS.gene051579 | MS.gene64700 | 0.825148 | 5.49E-54 | -1.69E-46 |
MS.gene051960 | MS.gene64700 | 0.803525 | 3.34E-49 | -1.69E-46 |
MS.gene052071 | MS.gene64700 | 0.802157 | 6.41E-49 | -1.69E-46 |
MS.gene052937 | MS.gene64700 | 0.80403 | 2.63E-49 | -1.69E-46 |
MS.gene054056 | MS.gene64700 | 0.810341 | 1.21E-50 | -1.69E-46 |
MS.gene055776 | MS.gene64700 | -0.818065 | 2.38E-52 | -1.69E-46 |
MS.gene056761 | MS.gene64700 | 0.815744 | 7.90E-52 | -1.69E-46 |
MS.gene057148 | MS.gene64700 | -0.839922 | 1.19E-57 | -1.69E-46 |
MS.gene059022 | MS.gene64700 | -0.823219 | 1.56E-53 | -1.69E-46 |
MS.gene059677 | MS.gene64700 | -0.808958 | 2.40E-50 | -1.69E-46 |
MS.gene060337 | MS.gene64700 | 0.819794 | 9.63E-53 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene64700 | MS.gene006416 | PPI |
MS.gene64700 | MS.gene010555 | PPI |
MS.gene64700 | MS.gene02418 | PPI |
MS.gene64700 | MS.gene006415 | PPI |
MS.gene64700 | MS.gene59409 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64700.t1 | MTR_5g020980 | 98.994 | 497 | 5 | 0 | 1 | 497 | 7 | 503 | 0.0 | 1022 |
MS.gene64700.t1 | MTR_8g076920 | 48.069 | 466 | 230 | 5 | 1 | 463 | 17 | 473 | 8.42e-160 | 463 |
MS.gene64700.t1 | MTR_2g076690 | 44.924 | 463 | 242 | 5 | 1 | 459 | 1 | 454 | 3.99e-144 | 421 |
MS.gene64700.t1 | MTR_2g076970 | 44.325 | 467 | 247 | 6 | 13 | 479 | 9 | 462 | 1.76e-143 | 420 |
MS.gene64700.t1 | MTR_2g076920 | 45.905 | 464 | 235 | 6 | 1 | 462 | 1 | 450 | 3.85e-143 | 419 |
MS.gene64700.t1 | MTR_2g076710 | 46.429 | 448 | 224 | 9 | 5 | 444 | 3 | 442 | 3.32e-139 | 409 |
MS.gene64700.t1 | MTR_2g076840 | 45.497 | 433 | 226 | 4 | 12 | 444 | 8 | 430 | 4.85e-137 | 412 |
MS.gene64700.t1 | MTR_2g076840 | 50.735 | 272 | 126 | 4 | 171 | 440 | 438 | 703 | 4.92e-88 | 285 |
MS.gene64700.t1 | MTR_2g076900 | 42.921 | 445 | 247 | 3 | 12 | 454 | 8 | 447 | 4.91e-135 | 398 |
MS.gene64700.t1 | MTR_2g076990 | 46.384 | 401 | 203 | 6 | 62 | 459 | 1 | 392 | 3.29e-125 | 372 |
MS.gene64700.t1 | MTR_5g020990 | 40.217 | 460 | 251 | 6 | 3 | 444 | 21 | 474 | 1.08e-123 | 370 |
MS.gene64700.t1 | MTR_2g030420 | 40.756 | 476 | 241 | 8 | 5 | 456 | 7 | 465 | 1.29e-121 | 364 |
MS.gene64700.t1 | MTR_1g022250 | 41.667 | 468 | 233 | 7 | 7 | 448 | 6 | 459 | 1.04e-119 | 359 |
MS.gene64700.t1 | MTR_6g009540 | 39.785 | 465 | 238 | 9 | 7 | 440 | 6 | 459 | 4.23e-114 | 347 |
MS.gene64700.t1 | MTR_4g128260 | 39.752 | 483 | 245 | 8 | 8 | 454 | 5 | 477 | 2.23e-113 | 345 |
MS.gene64700.t1 | MTR_4g107370 | 38.413 | 479 | 248 | 8 | 5 | 445 | 7 | 476 | 2.88e-112 | 342 |
MS.gene64700.t1 | MTR_7g008040 | 39.278 | 471 | 241 | 9 | 5 | 441 | 2 | 461 | 6.10e-112 | 342 |
MS.gene64700.t1 | MTR_6g009520 | 39.871 | 464 | 239 | 8 | 7 | 440 | 8 | 461 | 1.13e-111 | 340 |
MS.gene64700.t1 | MTR_6g009720 | 37.924 | 472 | 243 | 7 | 7 | 439 | 8 | 468 | 1.93e-108 | 332 |
MS.gene64700.t1 | MTR_1g022245 | 38.771 | 472 | 237 | 9 | 7 | 440 | 4 | 461 | 1.67e-106 | 327 |
MS.gene64700.t1 | MTR_6g009553 | 37.473 | 459 | 234 | 7 | 24 | 440 | 1 | 448 | 3.60e-104 | 320 |
MS.gene64700.t1 | MTR_6g042290 | 39.640 | 444 | 237 | 7 | 13 | 440 | 23 | 451 | 1.52e-103 | 319 |
MS.gene64700.t1 | MTR_6g009770 | 38.584 | 438 | 220 | 6 | 41 | 440 | 21 | 447 | 2.87e-102 | 315 |
MS.gene64700.t1 | MTR_3g103150 | 47.931 | 290 | 140 | 3 | 162 | 447 | 1 | 283 | 2.28e-99 | 301 |
MS.gene64700.t1 | MTR_2g061820 | 36.807 | 451 | 243 | 8 | 17 | 440 | 9 | 444 | 8.75e-97 | 302 |
MS.gene64700.t1 | MTR_6g009510 | 37.300 | 437 | 212 | 7 | 13 | 440 | 23 | 406 | 4.01e-92 | 288 |
MS.gene64700.t1 | MTR_6g009660 | 36.099 | 446 | 222 | 13 | 12 | 440 | 12 | 411 | 1.11e-80 | 259 |
MS.gene64700.t1 | MTR_5g021020 | 33.333 | 459 | 227 | 13 | 3 | 447 | 19 | 412 | 3.97e-78 | 250 |
MS.gene64700.t1 | MTR_7g117950 | 32.658 | 395 | 221 | 10 | 57 | 447 | 56 | 409 | 2.66e-65 | 218 |
MS.gene64700.t1 | MTR_3g092060 | 33.424 | 368 | 209 | 9 | 65 | 428 | 66 | 401 | 1.70e-63 | 214 |
MS.gene64700.t1 | MTR_8g027200 | 31.180 | 356 | 188 | 6 | 94 | 447 | 92 | 392 | 3.77e-48 | 172 |
MS.gene64700.t1 | MTR_5g021000 | 59.048 | 105 | 42 | 1 | 337 | 440 | 1 | 105 | 8.99e-41 | 144 |
MS.gene64700.t1 | MTR_5g020720 | 41.304 | 184 | 88 | 5 | 268 | 447 | 25 | 192 | 4.32e-37 | 135 |
MS.gene64700.t1 | MTR_1g011680 | 48.246 | 114 | 58 | 1 | 327 | 440 | 19 | 131 | 4.62e-29 | 113 |
MS.gene64700.t1 | MTR_5g021010 | 55.056 | 89 | 39 | 1 | 354 | 441 | 34 | 122 | 2.19e-28 | 109 |
MS.gene64700.t1 | MTR_3g117230 | 39.216 | 153 | 74 | 7 | 235 | 376 | 166 | 310 | 1.52e-15 | 79.0 |
MS.gene64700.t1 | MTR_3g112260 | 38.562 | 153 | 75 | 7 | 235 | 376 | 163 | 307 | 2.39e-15 | 78.2 |
MS.gene64700.t1 | MTR_7g010800 | 36.612 | 183 | 102 | 6 | 209 | 383 | 207 | 383 | 4.33e-15 | 78.6 |
MS.gene64700.t1 | MTR_3g062510 | 34.731 | 167 | 88 | 6 | 220 | 374 | 171 | 328 | 1.00e-14 | 76.6 |
MS.gene64700.t1 | MTR_3g062510 | 34.731 | 167 | 88 | 6 | 220 | 374 | 171 | 328 | 1.49e-14 | 75.5 |
MS.gene64700.t1 | MTR_7g099640 | 34.783 | 161 | 92 | 5 | 223 | 375 | 202 | 357 | 8.39e-14 | 73.9 |
MS.gene64700.t1 | MTR_7g099640 | 34.783 | 161 | 92 | 5 | 223 | 375 | 202 | 357 | 8.94e-14 | 73.6 |
MS.gene64700.t1 | MTR_1g069105 | 33.951 | 162 | 94 | 5 | 223 | 376 | 203 | 359 | 1.41e-13 | 72.8 |
MS.gene64700.t1 | MTR_1g069105 | 34.161 | 161 | 93 | 5 | 223 | 375 | 203 | 358 | 1.64e-13 | 72.8 |
MS.gene64700.t1 | MTR_4g094270 | 31.429 | 175 | 108 | 5 | 208 | 374 | 156 | 326 | 3.91e-13 | 71.6 |
MS.gene64700.t1 | MTR_1g083330 | 31.792 | 173 | 97 | 7 | 223 | 383 | 182 | 345 | 4.23e-13 | 71.6 |
MS.gene64700.t1 | MTR_4g033235 | 31.792 | 173 | 97 | 7 | 223 | 383 | 183 | 346 | 4.69e-13 | 71.2 |
MS.gene64700.t1 | MTR_1g113750 | 39.623 | 106 | 52 | 5 | 370 | 465 | 16 | 119 | 1.22e-12 | 65.5 |
MS.gene64700.t1 | MTR_2g076820 | 46.875 | 64 | 33 | 1 | 370 | 433 | 1 | 63 | 2.30e-12 | 62.8 |
MS.gene64700.t1 | MTR_7g096060 | 34.659 | 176 | 96 | 8 | 210 | 374 | 242 | 409 | 5.54e-12 | 68.6 |
MS.gene64700.t1 | MTR_6g059690 | 33.333 | 183 | 103 | 8 | 203 | 374 | 192 | 366 | 5.73e-12 | 68.6 |
MS.gene64700.t1 | MTR_7g078570 | 29.084 | 251 | 152 | 11 | 210 | 441 | 194 | 437 | 1.81e-11 | 67.0 |
MS.gene64700.t1 | MTR_3g104480 | 28.814 | 177 | 110 | 5 | 224 | 392 | 237 | 405 | 1.90e-11 | 67.0 |
MS.gene64700.t1 | MTR_7g088850 | 29.375 | 160 | 99 | 5 | 237 | 387 | 311 | 465 | 3.80e-11 | 65.9 |
MS.gene64700.t1 | MTR_7g089040 | 31.818 | 154 | 89 | 6 | 235 | 380 | 411 | 556 | 4.00e-11 | 66.2 |
MS.gene64700.t1 | MTR_4g064350 | 32.292 | 192 | 111 | 8 | 203 | 383 | 315 | 498 | 4.61e-11 | 65.9 |
MS.gene64700.t1 | MTR_8g099605 | 27.919 | 197 | 112 | 7 | 224 | 395 | 419 | 610 | 6.93e-11 | 65.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64700.t1 | AT5G17760 | 54.202 | 476 | 196 | 7 | 1 | 462 | 7 | 474 | 3.25e-178 | 510 |
MS.gene64700.t1 | AT5G17740 | 52.463 | 467 | 198 | 8 | 1 | 453 | 7 | 463 | 1.37e-172 | 497 |
MS.gene64700.t1 | AT5G17730 | 51.770 | 452 | 201 | 7 | 1 | 445 | 7 | 448 | 1.80e-164 | 474 |
MS.gene64700.t1 | AT3G50930 | 49.790 | 476 | 228 | 4 | 1 | 468 | 55 | 527 | 1.81e-164 | 478 |
MS.gene64700.t1 | AT2G18190 | 47.862 | 491 | 220 | 6 | 3 | 484 | 11 | 474 | 1.09e-162 | 470 |
MS.gene64700.t1 | AT2G18193 | 50.452 | 442 | 199 | 3 | 10 | 445 | 17 | 444 | 3.09e-162 | 469 |
MS.gene64700.t1 | AT3G50940 | 50.000 | 422 | 204 | 4 | 22 | 443 | 30 | 444 | 3.61e-156 | 452 |
MS.gene64700.t1 | AT5G17750 | 47.880 | 401 | 175 | 4 | 1 | 398 | 7 | 376 | 8.10e-140 | 408 |
MS.gene64700.t1 | AT5G17760 | 52.484 | 322 | 139 | 3 | 1 | 314 | 7 | 322 | 7.62e-116 | 345 |
MS.gene64700.t1 | AT5G40000 | 38.889 | 486 | 240 | 11 | 8 | 464 | 8 | 465 | 1.71e-115 | 348 |
MS.gene64700.t1 | AT1G43910 | 40.812 | 468 | 231 | 8 | 1 | 445 | 8 | 452 | 3.15e-115 | 348 |
MS.gene64700.t1 | AT4G05380 | 42.299 | 461 | 231 | 12 | 1 | 444 | 9 | 451 | 3.62e-115 | 347 |
MS.gene64700.t1 | AT3G28610 | 40.215 | 465 | 225 | 9 | 11 | 443 | 6 | 449 | 8.14e-114 | 345 |
MS.gene64700.t1 | AT4G25835 | 40.498 | 442 | 229 | 5 | 8 | 425 | 5 | 436 | 1.15e-113 | 345 |
MS.gene64700.t1 | AT3G28600 | 40.000 | 470 | 229 | 10 | 9 | 446 | 5 | 453 | 1.48e-113 | 344 |
MS.gene64700.t1 | AT3G28540 | 39.744 | 468 | 237 | 8 | 1 | 437 | 1 | 454 | 4.14e-113 | 344 |
MS.gene64700.t1 | AT3G28540 | 39.744 | 468 | 237 | 8 | 1 | 437 | 1 | 454 | 5.34e-113 | 343 |
MS.gene64700.t1 | AT5G57480 | 39.278 | 471 | 238 | 8 | 8 | 442 | 5 | 463 | 6.72e-111 | 338 |
MS.gene64700.t1 | AT3G28510 | 38.723 | 470 | 252 | 7 | 1 | 443 | 1 | 461 | 3.62e-109 | 334 |
MS.gene64700.t1 | AT4G30250 | 40.127 | 471 | 238 | 8 | 5 | 442 | 2 | 461 | 3.55e-107 | 329 |
MS.gene64700.t1 | AT4G30250 | 40.127 | 471 | 238 | 8 | 5 | 442 | 4 | 463 | 4.19e-107 | 329 |
MS.gene64700.t1 | AT5G40010 | 38.022 | 455 | 241 | 8 | 7 | 430 | 7 | 451 | 1.52e-106 | 327 |
MS.gene64700.t1 | AT3G28570 | 38.723 | 470 | 233 | 11 | 12 | 459 | 10 | 446 | 6.77e-103 | 316 |
MS.gene64700.t1 | AT3G28570 | 38.723 | 470 | 233 | 11 | 12 | 459 | 17 | 453 | 9.61e-103 | 315 |
MS.gene64700.t1 | AT3G28580 | 37.310 | 461 | 243 | 11 | 1 | 430 | 1 | 446 | 1.04e-100 | 311 |
MS.gene64700.t1 | AT3G28520 | 37.449 | 486 | 246 | 11 | 16 | 457 | 2 | 473 | 8.72e-99 | 306 |
MS.gene64700.t1 | AT3G28600 | 50.853 | 293 | 125 | 5 | 172 | 446 | 123 | 414 | 6.29e-97 | 300 |
MS.gene64700.t1 | AT3G29800 | 36.638 | 464 | 227 | 14 | 20 | 473 | 5 | 411 | 1.88e-89 | 281 |
MS.gene64700.t1 | AT3G28580 | 35.666 | 443 | 253 | 11 | 1 | 430 | 1 | 424 | 7.72e-89 | 280 |
MS.gene64700.t1 | AT2G46620 | 35.864 | 382 | 202 | 10 | 57 | 428 | 55 | 403 | 1.45e-72 | 238 |
MS.gene64700.t1 | AT4G05340 | 63.636 | 77 | 28 | 0 | 318 | 394 | 17 | 93 | 2.97e-28 | 108 |
MS.gene64700.t1 | AT3G28560 | 27.679 | 224 | 143 | 5 | 1 | 218 | 1 | 211 | 6.26e-23 | 98.6 |
MS.gene64700.t1 | AT5G43010 | 38.562 | 153 | 75 | 7 | 235 | 376 | 163 | 307 | 3.97e-15 | 77.8 |
MS.gene64700.t1 | AT1G45000 | 38.562 | 153 | 75 | 7 | 235 | 376 | 163 | 307 | 5.75e-15 | 77.0 |
MS.gene64700.t1 | AT5G58290 | 34.731 | 167 | 88 | 6 | 220 | 374 | 164 | 321 | 8.52e-15 | 76.6 |
MS.gene64700.t1 | AT2G20140 | 34.783 | 161 | 92 | 5 | 223 | 375 | 200 | 355 | 3.74e-14 | 75.1 |
MS.gene64700.t1 | AT4G29040 | 34.783 | 161 | 92 | 5 | 223 | 375 | 200 | 355 | 5.11e-14 | 74.3 |
MS.gene64700.t1 | AT1G09100 | 32.370 | 173 | 96 | 7 | 223 | 383 | 182 | 345 | 8.87e-14 | 73.6 |
MS.gene64700.t1 | AT5G20000 | 31.217 | 189 | 117 | 6 | 208 | 387 | 158 | 342 | 4.09e-13 | 71.6 |
MS.gene64700.t1 | AT5G19990 | 31.217 | 189 | 117 | 6 | 208 | 387 | 158 | 342 | 4.21e-13 | 71.6 |
MS.gene64700.t1 | AT5G19990 | 31.217 | 189 | 117 | 6 | 208 | 387 | 158 | 342 | 4.21e-13 | 71.6 |
MS.gene64700.t1 | AT5G19990 | 31.429 | 175 | 108 | 5 | 208 | 374 | 100 | 270 | 5.98e-13 | 70.5 |
MS.gene64700.t1 | AT3G02450 | 32.995 | 197 | 108 | 8 | 237 | 422 | 359 | 542 | 1.62e-12 | 70.5 |
MS.gene64700.t1 | AT5G42270 | 30.978 | 184 | 111 | 6 | 209 | 383 | 248 | 424 | 1.14e-11 | 67.8 |
MS.gene64700.t1 | AT3G56690 | 25.651 | 269 | 152 | 11 | 120 | 376 | 659 | 891 | 9.19e-11 | 65.1 |
Find 73 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATGATAAGATTCTTCATTTC+TGG | 0.112367 | 5.2:-12203721 | None:intergenic |
TACTGCTAATAGGTCTATTT+TGG | 0.170805 | 5.2:+12203951 | MS.gene64700:CDS |
TCCCATGATAATCCTTTCTT+TGG | 0.247677 | 5.2:+12206087 | MS.gene64700:CDS |
TTAACTTTATAGATGGATTA+TGG | 0.296200 | 5.2:+12205905 | MS.gene64700:CDS |
CTCACAATCCGGTTAGAAAA+AGG | 0.313094 | 5.2:+12203361 | MS.gene64700:CDS |
AAAGTACAAGGAAGTTGTTT+TGG | 0.317579 | 5.2:+12203537 | MS.gene64700:CDS |
TGGATGCAGTTGACGCTATC+TGG | 0.331920 | 5.2:+12205877 | MS.gene64700:intron |
TTGTATGGTCCTCCAGGAAC+TGG | 0.332354 | 5.2:+12203820 | MS.gene64700:CDS |
AAACTAGATTTCCCAGTTCC+TGG | 0.339978 | 5.2:-12203832 | None:intergenic |
GGATTACTTAACTTTATAGA+TGG | 0.342287 | 5.2:+12205898 | MS.gene64700:CDS |
GTTGTTGAAGAGGAAGAAAA+TGG | 0.344152 | 5.2:+12206215 | MS.gene64700:CDS |
AACACTGCTTATTGTTATAG+TGG | 0.352047 | 5.2:+12203637 | MS.gene64700:CDS |
ATAAGAAAGTTGGTAGGGCT+TGG | 0.373964 | 5.2:+12203782 | MS.gene64700:CDS |
ATGTGCATGTCCATTCTTCC+TGG | 0.376522 | 5.2:-12206003 | None:intergenic |
CATCATGCTGCTTCGTTCCA+TGG | 0.388268 | 5.2:+12203123 | MS.gene64700:CDS |
TGCTTCTTGCTACTGCTAAT+AGG | 0.398837 | 5.2:+12203941 | MS.gene64700:CDS |
CCTTTCTTTGGAGAGATTGA+AGG | 0.403654 | 5.2:+12206099 | MS.gene64700:CDS |
ATGTCTTATTGTTCTTATGA+AGG | 0.415116 | 5.2:+12206030 | MS.gene64700:CDS |
CTGGATCTAATCTTTCTTTG+TGG | 0.418635 | 5.2:-12205969 | None:intergenic |
ATCTAGTTTGATTGCTGCTA+TGG | 0.422293 | 5.2:+12203846 | MS.gene64700:CDS |
AACATTTGAAACACTTGCAA+TGG | 0.424026 | 5.2:+12203696 | MS.gene64700:CDS |
ATTGTTATAGTGGTGTGAAA+TGG | 0.427762 | 5.2:+12203647 | MS.gene64700:CDS |
AAACGTGGTTATTTGTTGTA+TGG | 0.444569 | 5.2:+12203805 | MS.gene64700:CDS |
CTTCCTGGCCTTAAAAGTGC+TGG | 0.444730 | 5.2:-12205988 | None:intergenic |
TTGTTATAGTGGTGTGAAAT+GGG | 0.444869 | 5.2:+12203648 | MS.gene64700:CDS |
CTCCAAAGAAAGGATTATCA+TGG | 0.452994 | 5.2:-12206089 | None:intergenic |
TTCGTTCTTCATCAATTCCT+CGG | 0.463547 | 5.2:-12206160 | None:intergenic |
CCTTCTCCATGCCTCCTCTC+AGG | 0.464945 | 5.2:-12204006 | None:intergenic |
AATTCCTCGGCAACTTGTGC+AGG | 0.473590 | 5.2:-12206147 | None:intergenic |
TATTTGTTGTATGGTCCTCC+AGG | 0.478870 | 5.2:+12203814 | MS.gene64700:CDS |
TAAACAGCAAAATGATATAC+AGG | 0.483102 | 5.2:+12204032 | MS.gene64700:CDS |
CTATGATGAGTGTGAGTGTA+GGG | 0.494050 | 5.2:-12203219 | None:intergenic |
CCTTCAATCTCTCCAAAGAA+AGG | 0.498070 | 5.2:-12206099 | None:intergenic |
GATATATTTGATCTTCAACT+TGG | 0.500692 | 5.2:+12203886 | MS.gene64700:CDS |
AGGAAAACCGTTGTACATAT+CGG | 0.511083 | 5.2:-12203395 | None:intergenic |
CTCATCATAGAAGAATCAAC+AGG | 0.511570 | 5.2:+12203232 | MS.gene64700:CDS |
CAGCATGATGGAAGCTGTCA+TGG | 0.517798 | 5.2:-12203110 | None:intergenic |
AGGTAGCCACGGATTGGTTG+AGG | 0.525058 | 5.2:-12203160 | None:intergenic |
ATGTTGTTGTTACTCAAAGA+AGG | 0.525296 | 5.2:+12206343 | MS.gene64700:CDS |
TAAGCTGAGAAAATTGTAGA+TGG | 0.528567 | 5.2:-12203082 | None:intergenic |
GGTAGCGAAAGGTGTTGTAA+AGG | 0.529197 | 5.2:-12203180 | None:intergenic |
GACGCGGAGGCGACGCTCGA+AGG | 0.532422 | 5.2:+12206183 | MS.gene64700:CDS |
TTAGCTTTATCAAGAATGAA+AGG | 0.540681 | 5.2:-12203571 | None:intergenic |
GCAAGTGTTTCAAATGTTGA+AGG | 0.550183 | 5.2:-12203691 | None:intergenic |
TTGTAAAGGTAGCCACGGAT+TGG | 0.558453 | 5.2:-12203166 | None:intergenic |
GAGAAAATTGTAGATGGTGA+AGG | 0.561688 | 5.2:-12203076 | None:intergenic |
GATTTGTCAAGTTGTTGAAG+AGG | 0.562772 | 5.2:+12206205 | MS.gene64700:CDS |
AGGAATGAGTTCTTGTGCCA+TGG | 0.564959 | 5.2:-12203140 | None:intergenic |
CCTGAGAGGAGGCATGGAGA+AGG | 0.567782 | 5.2:+12204006 | MS.gene64700:CDS |
TCCAAAGAAAGGATTATCAT+GGG | 0.577137 | 5.2:-12206088 | None:intergenic |
GATATTCCTGAGAGGAGGCA+TGG | 0.578540 | 5.2:+12204000 | MS.gene64700:CDS |
GATGGATTATGGTCAAGTTG+TGG | 0.580818 | 5.2:+12205916 | MS.gene64700:CDS |
CAAGTGTTTCAAATGTTGAA+GGG | 0.590645 | 5.2:-12203690 | None:intergenic |
CATGGAACGAAGCAGCATGA+TGG | 0.591190 | 5.2:-12203122 | None:intergenic |
TGTATGGTCCTCCAGGAACT+GGG | 0.595574 | 5.2:+12203821 | MS.gene64700:CDS |
GTTGGTAGGGCTTGGAAACG+TGG | 0.595739 | 5.2:+12203790 | MS.gene64700:CDS |
ACTCAGCTGCATCATAGACT+TGG | 0.603542 | 5.2:-12203267 | None:intergenic |
CAAATGAATCTCCATTTGAG+AGG | 0.606336 | 5.2:-12203415 | None:intergenic |
TTGAAGAGGAAGAAAATGGA+AGG | 0.607954 | 5.2:+12206219 | MS.gene64700:CDS |
AGTGTGAGTGTAGGGGAACG+TGG | 0.609142 | 5.2:-12203211 | None:intergenic |
AGGACAAGAGGTTATAAGAG+AGG | 0.609200 | 5.2:+12206363 | MS.gene64700:CDS |
AGGTGTTGTAAAGGTAGCCA+CGG | 0.610393 | 5.2:-12203171 | None:intergenic |
TCTATGATGAGTGTGAGTGT+AGG | 0.612777 | 5.2:-12203220 | None:intergenic |
GTTACTCAAAGAAGGACAAG+AGG | 0.617295 | 5.2:+12206351 | MS.gene64700:CDS |
CTCATTCCTCAACCAATCCG+TGG | 0.640131 | 5.2:+12203154 | MS.gene64700:CDS |
GATGAAGAACGAAGACGCGG+AGG | 0.643880 | 5.2:+12206170 | MS.gene64700:CDS |
AACACCTGCACAAGTTGCCG+AGG | 0.645385 | 5.2:+12206143 | MS.gene64700:CDS |
GTATTGATATTCCTGAGAGG+AGG | 0.657296 | 5.2:+12203995 | MS.gene64700:CDS |
AAATTAACCGATATGTACAA+CGG | 0.665907 | 5.2:+12203388 | MS.gene64700:CDS |
CTAGATTTCCCAGTTCCTGG+AGG | 0.685154 | 5.2:-12203829 | None:intergenic |
TATGATGAGTGTGAGTGTAG+GGG | 0.700365 | 5.2:-12203218 | None:intergenic |
GCAGTATTGATATTCCTGAG+AGG | 0.713312 | 5.2:+12203992 | MS.gene64700:CDS |
ATTGATGAAGAACGAAGACG+CGG | 0.719308 | 5.2:+12206167 | MS.gene64700:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAAATTATGACATGAAATT+AGG | + | chr5.2:12204650-12204669 | MS.gene64700:intron | 15.0% |
!! | TATGGTATGAAAAAATAAAT+AGG | - | chr5.2:12204282-12204301 | None:intergenic | 15.0% |
!! | TTAAATTGTATAAATATCCA+CGG | - | chr5.2:12205464-12205483 | None:intergenic | 15.0% |
!! | TTTAATTAACAAACATAAAC+AGG | - | chr5.2:12204173-12204192 | None:intergenic | 15.0% |
!!! | ATTTTATAAATGCATTGATA+TGG | - | chr5.2:12204300-12204319 | None:intergenic | 15.0% |
!!! | TAATTGATTTCATTTTAGAT+GGG | + | chr5.2:12205714-12205733 | MS.gene64700:intron | 15.0% |
!!! | TTAATTGATTTCATTTTAGA+TGG | + | chr5.2:12205713-12205732 | MS.gene64700:intron | 15.0% |
!! | ATTGAAAGTTCTCTTTAATT+TGG | + | chr5.2:12204723-12204742 | MS.gene64700:intron | 20.0% |
!! | CAATAATTGGTTAAGAAATT+TGG | + | chr5.2:12205095-12205114 | MS.gene64700:intron | 20.0% |
!! | TTTATAAAATTGAAGTGAAG+TGG | + | chr5.2:12204310-12204329 | MS.gene64700:intron | 20.0% |
!!! | AATTTTTTTATCAGTAGCAA+TGG | + | chr5.2:12204531-12204550 | MS.gene64700:intron | 20.0% |
!!! | CTAAAAAAATATGCCATTTT+AGG | - | chr5.2:12204834-12204853 | None:intergenic | 20.0% |
!!! | TAGAGTCATTTTCTTATTAT+TGG | + | chr5.2:12204963-12204982 | MS.gene64700:intron | 20.0% |
!!! | TTAACTTTATAGATGGATTA+TGG | + | chr5.2:12205905-12205924 | MS.gene64700:CDS | 20.0% |
! | AAAATAAATAGGTCTCCAAT+TGG | - | chr5.2:12204271-12204290 | None:intergenic | 25.0% |
! | AAATTAACCGATATGTACAA+CGG | + | chr5.2:12203388-12203407 | MS.gene64700:CDS | 25.0% |
! | AAGAAAAAGAATTCCAATTG+TGG | + | chr5.2:12204768-12204787 | MS.gene64700:intron | 25.0% |
! | AGCATATTACTAGAATTTCT+AGG | - | chr5.2:12204129-12204148 | None:intergenic | 25.0% |
! | ATGATAAGATTCTTCATTTC+TGG | - | chr5.2:12203724-12203743 | None:intergenic | 25.0% |
! | CTATGTATGTAAAACAGAAA+GGG | - | chr5.2:12205319-12205338 | None:intergenic | 25.0% |
! | GATATATTTGATCTTCAACT+TGG | + | chr5.2:12203886-12203905 | MS.gene64700:CDS | 25.0% |
! | GGATTACTTAACTTTATAGA+TGG | + | chr5.2:12205898-12205917 | MS.gene64700:CDS | 25.0% |
! | TAAACAGCAAAATGATATAC+AGG | + | chr5.2:12204032-12204051 | MS.gene64700:CDS | 25.0% |
! | TACAGTTACTCAAAAAGAAT+TGG | - | chr5.2:12205691-12205710 | None:intergenic | 25.0% |
! | TGTCCTTGAAATTATAATGT+TGG | + | chr5.2:12205784-12205803 | MS.gene64700:intron | 25.0% |
! | TTCGTGTAAAACTTCTATTA+TGG | + | chr5.2:12205413-12205432 | MS.gene64700:intron | 25.0% |
!! | ATAATAGAAGTTTTACACGA+AGG | - | chr5.2:12205414-12205433 | None:intergenic | 25.0% |
!! | ATGTCTTATTGTTCTTATGA+AGG | + | chr5.2:12206030-12206049 | MS.gene64700:CDS | 25.0% |
!! | ATTTCTCATCTTGATTTTGA+TGG | + | chr5.2:12205853-12205872 | MS.gene64700:intron | 25.0% |
!! | TGATGATGATATATACCATA+GGG | - | chr5.2:12205193-12205212 | None:intergenic | 25.0% |
!!! | AAGTTTTGACAAAAAGTACA+AGG | + | chr5.2:12203525-12203544 | MS.gene64700:CDS | 25.0% |
!!! | AATTTTAGCTTCAAACTACT+TGG | + | chr5.2:12206059-12206078 | MS.gene64700:CDS | 25.0% |
!!! | AGAGAGTTTTATAAGAAAGT+TGG | + | chr5.2:12203772-12203791 | MS.gene64700:CDS | 25.0% |
!!! | AGTTTTATAAGAAAGTTGGT+AGG | + | chr5.2:12203776-12203795 | MS.gene64700:CDS | 25.0% |
!!! | ATTGTGAGTTTTTTCTCTTT+TGG | - | chr5.2:12203349-12203368 | None:intergenic | 25.0% |
!!! | ATTTTGAGTCTTTCATTTTC+AGG | - | chr5.2:12203316-12203335 | None:intergenic | 25.0% |
!!! | ATTTTTTTCTAGATCCACTA+AGG | - | chr5.2:12204621-12204640 | None:intergenic | 25.0% |
!!! | CTAATTTTTTCACAACCAAT+TGG | + | chr5.2:12204253-12204272 | MS.gene64700:intron | 25.0% |
!!! | GTTTTAGTTCTTGTTGATTT+TGG | + | chr5.2:12204678-12204697 | MS.gene64700:intron | 25.0% |
!!! | GTTTTATAAGAAAGTTGGTA+GGG | + | chr5.2:12203777-12203796 | MS.gene64700:CDS | 25.0% |
!!! | TTAGCTTTATCAAGAATGAA+AGG | - | chr5.2:12203574-12203593 | None:intergenic | 25.0% |
!!! | TTGATGATGATATATACCAT+AGG | - | chr5.2:12205194-12205213 | None:intergenic | 25.0% |
!!! | TTGTGAGTTTTTTCTCTTTT+GGG | - | chr5.2:12203348-12203367 | None:intergenic | 25.0% |
!!! | TTTTGAGTCTTTCATTTTCA+GGG | - | chr5.2:12203315-12203334 | None:intergenic | 25.0% |
AACACTGCTTATTGTTATAG+TGG | + | chr5.2:12203637-12203656 | MS.gene64700:CDS | 30.0% | |
AAGAGAAAAAACTCACAATC+CGG | + | chr5.2:12203350-12203369 | MS.gene64700:CDS | 30.0% | |
AATAGCAAAGTGTGAGTTAT+TGG | + | chr5.2:12204808-12204827 | MS.gene64700:intron | 30.0% | |
AGCAATGGAATTCAATATTC+CGG | + | chr5.2:12204546-12204565 | MS.gene64700:intron | 30.0% | |
ATTGTTATAGTGGTGTGAAA+TGG | + | chr5.2:12203647-12203666 | MS.gene64700:CDS | 30.0% | |
CAAGTGTTTCAAATGTTGAA+GGG | - | chr5.2:12203693-12203712 | None:intergenic | 30.0% | |
CGACCAACATTATAATTTCA+AGG | - | chr5.2:12205790-12205809 | None:intergenic | 30.0% | |
CTAACGTGTAGTTCAATAAT+TGG | + | chr5.2:12205082-12205101 | MS.gene64700:intron | 30.0% | |
GCTATGTATGTAAAACAGAA+AGG | - | chr5.2:12205320-12205339 | None:intergenic | 30.0% | |
TAAGCTGAGAAAATTGTAGA+TGG | - | chr5.2:12203085-12203104 | None:intergenic | 30.0% | |
TCCAAAGAAAGGATTATCAT+GGG | - | chr5.2:12206091-12206110 | None:intergenic | 30.0% | |
TGTGTGCAAGAGAAAATTAA+AGG | - | chr5.2:12205002-12205021 | None:intergenic | 30.0% | |
TTGTTATAGTGGTGTGAAAT+GGG | + | chr5.2:12203648-12203667 | MS.gene64700:CDS | 30.0% | |
! | AAAGTACAAGGAAGTTGTTT+TGG | + | chr5.2:12203537-12203556 | MS.gene64700:CDS | 30.0% |
! | AACATTTGAAACACTTGCAA+TGG | + | chr5.2:12203696-12203715 | MS.gene64700:CDS | 30.0% |
! | ATGTTGTTGTTACTCAAAGA+AGG | + | chr5.2:12206343-12206362 | MS.gene64700:CDS | 30.0% |
! | ATTTTTCGCCTTTTTCTAAC+CGG | - | chr5.2:12203372-12203391 | None:intergenic | 30.0% |
! | TACTGCTAATAGGTCTATTT+TGG | + | chr5.2:12203951-12203970 | MS.gene64700:CDS | 30.0% |
! | TGTTTTACATACATAGCAAG+AGG | + | chr5.2:12205323-12205342 | MS.gene64700:intron | 30.0% |
! | TTTGAGTCTTTCATTTTCAG+GGG | - | chr5.2:12203314-12203333 | None:intergenic | 30.0% |
! | TTTTCATCAAAGATATTCCG+TGG | + | chr5.2:12205444-12205463 | MS.gene64700:intron | 30.0% |
!! | AAACGTGGTTATTTGTTGTA+TGG | + | chr5.2:12203805-12203824 | MS.gene64700:CDS | 30.0% |
!! | CAAAGGTCTTTGTTATTGAA+TGG | + | chr5.2:12205368-12205387 | MS.gene64700:intron | 30.0% |
!!! | GGCATATTTTTTTAGTAGCT+AGG | + | chr5.2:12204839-12204858 | MS.gene64700:intron | 30.0% |
!!! | TTGATAGTGAAATGGCATTT+TGG | - | chr5.2:12205245-12205264 | None:intergenic | 30.0% |
ACACAGTCATATTCCACAAT+TGG | - | chr5.2:12204784-12204803 | None:intergenic | 35.0% | |
AGGAAAACCGTTGTACATAT+CGG | - | chr5.2:12203398-12203417 | None:intergenic | 35.0% | |
CAAATGAATCTCCATTTGAG+AGG | - | chr5.2:12203418-12203437 | None:intergenic | 35.0% | |
CAGCAAAATGATATACAGGT+TGG | + | chr5.2:12204036-12204055 | MS.gene64700:intron | 35.0% | |
CTCATCATAGAAGAATCAAC+AGG | + | chr5.2:12203232-12203251 | MS.gene64700:CDS | 35.0% | |
CTCCAAAGAAAGGATTATCA+TGG | - | chr5.2:12206092-12206111 | None:intergenic | 35.0% | |
CTGGATCTAATCTTTCTTTG+TGG | - | chr5.2:12205972-12205991 | None:intergenic | 35.0% | |
GAGAAAATTGTAGATGGTGA+AGG | - | chr5.2:12203079-12203098 | None:intergenic | 35.0% | |
GCAAGTGTTTCAAATGTTGA+AGG | - | chr5.2:12203694-12203713 | None:intergenic | 35.0% | |
GCAATGGAATTCAATATTCC+GGG | + | chr5.2:12204547-12204566 | MS.gene64700:intron | 35.0% | |
GTAAGTGAACTTGTAAATCC+CGG | - | chr5.2:12204568-12204587 | None:intergenic | 35.0% | |
GTTGTTGAAGAGGAAGAAAA+TGG | + | chr5.2:12206215-12206234 | MS.gene64700:CDS | 35.0% | |
TATTGTCTAATGCAATTGCG+TGG | - | chr5.2:12205269-12205288 | None:intergenic | 35.0% | |
TCCCATGATAATCCTTTCTT+TGG | + | chr5.2:12206087-12206106 | MS.gene64700:CDS | 35.0% | |
TCTTAGTGTAATAGTAAGCC+TGG | - | chr5.2:12204420-12204439 | None:intergenic | 35.0% | |
TGAACTACACGTTAGTTCAA+TGG | - | chr5.2:12205077-12205096 | None:intergenic | 35.0% | |
TTCGTTCTTCATCAATTCCT+CGG | - | chr5.2:12206163-12206182 | None:intergenic | 35.0% | |
TTGAAGAGGAAGAAAATGGA+AGG | + | chr5.2:12206219-12206238 | MS.gene64700:CDS | 35.0% | |
! | AATTTTCTCTTGCACACAAG+TGG | + | chr5.2:12205004-12205023 | MS.gene64700:intron | 35.0% |
! | ACAATCTAAAAAGCGTAAGG+TGG | + | chr5.2:12206278-12206297 | MS.gene64700:CDS | 35.0% |
! | ATCTAGTTTGATTGCTGCTA+TGG | + | chr5.2:12203846-12203865 | MS.gene64700:CDS | 35.0% |
! | GATTAGATCCAGCACTTTTA+AGG | + | chr5.2:12205980-12205999 | MS.gene64700:CDS | 35.0% |
! | GATTTGTCAAGTTGTTGAAG+AGG | + | chr5.2:12206205-12206224 | MS.gene64700:CDS | 35.0% |
! | GCAACAATCTAAAAAGCGTA+AGG | + | chr5.2:12206275-12206294 | MS.gene64700:CDS | 35.0% |
! | TGTGAGTTATTGGCCTAAAA+TGG | + | chr5.2:12204818-12204837 | MS.gene64700:intron | 35.0% |
!! | AGGTCTTTGTTATTGAATGG+TGG | + | chr5.2:12205371-12205390 | MS.gene64700:intron | 35.0% |
!! | CTCATCTTGATTTTGATGGA+TGG | + | chr5.2:12205857-12205876 | MS.gene64700:intron | 35.0% |
!! | TTCTCAAAAGCATTACCCTA+TGG | + | chr5.2:12205175-12205194 | MS.gene64700:intron | 35.0% |
!! | TTGACAATACTTGCTGTCAA+AGG | + | chr5.2:12205351-12205370 | MS.gene64700:intron | 35.0% |
AAACTAGATTTCCCAGTTCC+TGG | - | chr5.2:12203835-12203854 | None:intergenic | 40.0% | |
ACACCCTGAATAGGTACATT+GGG | + | chr5.2:12205050-12205069 | MS.gene64700:intron | 40.0% | |
AGGACAAGAGGTTATAAGAG+AGG | + | chr5.2:12206363-12206382 | MS.gene64700:CDS | 40.0% | |
ATTGATGAAGAACGAAGACG+CGG | + | chr5.2:12206167-12206186 | MS.gene64700:CDS | 40.0% | |
CCTTCAATCTCTCCAAAGAA+AGG | - | chr5.2:12206102-12206121 | None:intergenic | 40.0% | |
CTATGATGAGTGTGAGTGTA+GGG | - | chr5.2:12203222-12203241 | None:intergenic | 40.0% | |
CTCACAATCCGGTTAGAAAA+AGG | + | chr5.2:12203361-12203380 | MS.gene64700:CDS | 40.0% | |
GTGTCAAGGTCTCAAACAAA+AGG | - | chr5.2:12204911-12204930 | None:intergenic | 40.0% | |
GTTACTCAAAGAAGGACAAG+AGG | + | chr5.2:12206351-12206370 | MS.gene64700:CDS | 40.0% | |
TAAGGTCTAGTCAAGTCAAG+TGG | - | chr5.2:12204603-12204622 | None:intergenic | 40.0% | |
TATGATGAGTGTGAGTGTAG+GGG | - | chr5.2:12203221-12203240 | None:intergenic | 40.0% | |
TCTATGATGAGTGTGAGTGT+AGG | - | chr5.2:12203223-12203242 | None:intergenic | 40.0% | |
TGCTTCTTGCTACTGCTAAT+AGG | + | chr5.2:12203941-12203960 | MS.gene64700:CDS | 40.0% | |
! | ACAACGGTTTTCCTCTCAAA+TGG | + | chr5.2:12203404-12203423 | MS.gene64700:CDS | 40.0% |
! | ATTGAATGGTGGAAACCTCA+TGG | + | chr5.2:12205382-12205401 | MS.gene64700:intron | 40.0% |
! | CCTTTCTTTGGAGAGATTGA+AGG | + | chr5.2:12206099-12206118 | MS.gene64700:CDS | 40.0% |
! | GTATTGATATTCCTGAGAGG+AGG | + | chr5.2:12203995-12204014 | MS.gene64700:CDS | 40.0% |
! | TCTAAAAAGCGTAAGGTGGT+TGG | + | chr5.2:12206282-12206301 | MS.gene64700:CDS | 40.0% |
! | TTGAATGGTGGAAACCTCAT+GGG | + | chr5.2:12205383-12205402 | MS.gene64700:intron | 40.0% |
! | TTGACTTGACTAGACCTTAG+TGG | + | chr5.2:12204604-12204623 | MS.gene64700:intron | 40.0% |
!! | ATAAGAAAGTTGGTAGGGCT+TGG | + | chr5.2:12203782-12203801 | MS.gene64700:CDS | 40.0% |
!! | GATGGATTATGGTCAAGTTG+TGG | + | chr5.2:12205916-12205935 | MS.gene64700:CDS | 40.0% |
!! | GCAGTATTGATATTCCTGAG+AGG | + | chr5.2:12203992-12204011 | MS.gene64700:CDS | 40.0% |
!! | TATTTGTTGTATGGTCCTCC+AGG | + | chr5.2:12203814-12203833 | MS.gene64700:CDS | 40.0% |
!! | TGCGTGGATTGATAGTGAAA+TGG | - | chr5.2:12205253-12205272 | None:intergenic | 40.0% |
!!! | ACTTTTAAGGCCAGGAAGAA+TGG | + | chr5.2:12205993-12206012 | MS.gene64700:CDS | 40.0% |
!!! | TGGTTTTATGAGGTAGCGAA+AGG | - | chr5.2:12203194-12203213 | None:intergenic | 40.0% |
ACTCAGCTGCATCATAGACT+TGG | - | chr5.2:12203270-12203289 | None:intergenic | 45.0% | |
AGGAATGAGTTCTTGTGCCA+TGG | - | chr5.2:12203143-12203162 | None:intergenic | 45.0% | |
AGTGAACCTGTCAAGTGTCA+AGG | - | chr5.2:12204925-12204944 | None:intergenic | 45.0% | |
ATGTGCATGTCCATTCTTCC+TGG | - | chr5.2:12206006-12206025 | None:intergenic | 45.0% | |
CACACCCTGAATAGGTACAT+TGG | + | chr5.2:12205049-12205068 | MS.gene64700:intron | 45.0% | |
GGTCCCAATGTACCTATTCA+GGG | - | chr5.2:12205056-12205075 | None:intergenic | 45.0% | |
GTTGGTTGCAAGCAAAAACG+AGG | + | chr5.2:12206300-12206319 | MS.gene64700:CDS | 45.0% | |
TGAATCAGAACCCACATGCT+AGG | - | chr5.2:12204870-12204889 | None:intergenic | 45.0% | |
TGGTCCCAATGTACCTATTC+AGG | - | chr5.2:12205057-12205076 | None:intergenic | 45.0% | |
TTGAGACCTTGACACTTGAC+AGG | + | chr5.2:12204916-12204935 | MS.gene64700:intron | 45.0% | |
TTGTAAAGGTAGCCACGGAT+TGG | - | chr5.2:12203169-12203188 | None:intergenic | 45.0% | |
! | AGGTGTTGTAAAGGTAGCCA+CGG | - | chr5.2:12203174-12203193 | None:intergenic | 45.0% |
!! | ACACTAGCTTGCTCTTGAAG+GGG | - | chr5.2:12205636-12205655 | None:intergenic | 45.0% |
!! | CACACTAGCTTGCTCTTGAA+GGG | - | chr5.2:12205637-12205656 | None:intergenic | 45.0% |
!! | GGTAGCGAAAGGTGTTGTAA+AGG | - | chr5.2:12203183-12203202 | None:intergenic | 45.0% |
!! | TCACACTAGCTTGCTCTTGA+AGG | - | chr5.2:12205638-12205657 | None:intergenic | 45.0% |
!!! | GTGCTACATTTTCTAGCTCC+AGG | + | chr5.2:12204399-12204418 | MS.gene64700:intron | 45.0% |
!!! | TAGGGGAACGTGGTTTTATG+AGG | - | chr5.2:12203204-12203223 | None:intergenic | 45.0% |
AATTCCTCGGCAACTTGTGC+AGG | - | chr5.2:12206150-12206169 | None:intergenic | 50.0% | |
ACACGAAGGATCATCCCATG+AGG | - | chr5.2:12205400-12205419 | None:intergenic | 50.0% | |
CATGGAACGAAGCAGCATGA+TGG | - | chr5.2:12203125-12203144 | None:intergenic | 50.0% | |
CCATAGCACACACCCTGAAT+AGG | + | chr5.2:12205041-12205060 | MS.gene64700:intron | 50.0% | |
CCTATTCAGGGTGTGTGCTA+TGG | - | chr5.2:12205044-12205063 | None:intergenic | 50.0% | |
CTAGATTTCCCAGTTCCTGG+AGG | - | chr5.2:12203832-12203851 | None:intergenic | 50.0% | |
CTCATTCCTCAACCAATCCG+TGG | + | chr5.2:12203154-12203173 | MS.gene64700:CDS | 50.0% | |
GATATTCCTGAGAGGAGGCA+TGG | + | chr5.2:12204000-12204019 | MS.gene64700:CDS | 50.0% | |
GCAAGCAAAAACGAGGTGGT+GGG | + | chr5.2:12206307-12206326 | MS.gene64700:CDS | 50.0% | |
GGTTGCAAGCAAAAACGAGG+TGG | + | chr5.2:12206303-12206322 | MS.gene64700:CDS | 50.0% | |
TGCAAGCAAAAACGAGGTGG+TGG | + | chr5.2:12206306-12206325 | MS.gene64700:CDS | 50.0% | |
TGGATGCAGTTGACGCTATC+TGG | + | chr5.2:12205877-12205896 | MS.gene64700:intron | 50.0% | |
TGTATGGTCCTCCAGGAACT+GGG | + | chr5.2:12203821-12203840 | MS.gene64700:CDS | 50.0% | |
TTGTATGGTCCTCCAGGAAC+TGG | + | chr5.2:12203820-12203839 | MS.gene64700:CDS | 50.0% | |
! | CAGCATGATGGAAGCTGTCA+TGG | - | chr5.2:12203113-12203132 | None:intergenic | 50.0% |
! | CATCATGCTGCTTCGTTCCA+TGG | + | chr5.2:12203123-12203142 | MS.gene64700:CDS | 50.0% |
!! | CTTCCTGGCCTTAAAAGTGC+TGG | - | chr5.2:12205991-12206010 | None:intergenic | 50.0% |
!!! | GATCCAGCACTTTTAAGGCC+AGG | + | chr5.2:12205985-12206004 | MS.gene64700:CDS | 50.0% |
AACACCTGCACAAGTTGCCG+AGG | + | chr5.2:12206143-12206162 | MS.gene64700:CDS | 55.0% | |
AGTGTGAGTGTAGGGGAACG+TGG | - | chr5.2:12203214-12203233 | None:intergenic | 55.0% | |
CAGAACCCACATGCTAGGCT+AGG | - | chr5.2:12204865-12204884 | None:intergenic | 55.0% | |
CTAGGCCTAGCCTAGCATGT+GGG | + | chr5.2:12204857-12204876 | MS.gene64700:intron | 55.0% | |
GATGAAGAACGAAGACGCGG+AGG | + | chr5.2:12206170-12206189 | MS.gene64700:CDS | 55.0% | |
! | GTTGGTAGGGCTTGGAAACG+TGG | + | chr5.2:12203790-12203809 | MS.gene64700:CDS | 55.0% |
!! | AGGTAGCCACGGATTGGTTG+AGG | - | chr5.2:12203163-12203182 | None:intergenic | 55.0% |
CCTTCTCCATGCCTCCTCTC+AGG | - | chr5.2:12204009-12204028 | None:intergenic | 60.0% | |
GCTAGGCCTAGCCTAGCATG+TGG | + | chr5.2:12204856-12204875 | MS.gene64700:intron | 60.0% | |
! | CCTGAGAGGAGGCATGGAGA+AGG | + | chr5.2:12204006-12204025 | MS.gene64700:CDS | 60.0% |
GACGCGGAGGCGACGCTCGA+AGG | + | chr5.2:12206183-12206202 | MS.gene64700:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 12203073 | 12206398 | 12203073 | ID=MS.gene64700 |
chr5.2 | mRNA | 12203073 | 12206398 | 12203073 | ID=MS.gene64700.t1;Parent=MS.gene64700 |
chr5.2 | exon | 12203073 | 12204053 | 12203073 | ID=MS.gene64700.t1.exon1;Parent=MS.gene64700.t1 |
chr5.2 | CDS | 12203073 | 12204053 | 12203073 | ID=cds.MS.gene64700.t1;Parent=MS.gene64700.t1 |
chr5.2 | exon | 12205886 | 12206398 | 12205886 | ID=MS.gene64700.t1.exon2;Parent=MS.gene64700.t1 |
chr5.2 | CDS | 12205886 | 12206398 | 12205886 | ID=cds.MS.gene64700.t1;Parent=MS.gene64700.t1 |
Gene Sequence |
Protein sequence |