Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59409.t1 | XP_003612071.2 | 99 | 497 | 5 | 0 | 1 | 497 | 7 | 503 | 1.40E-256 | 895.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59409.t1 | Q9FN75 | 55.1 | 459 | 186 | 6 | 1 | 445 | 7 | 459 | 1.2e-139 | 498.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59409.t1 | G7KF09 | 99.0 | 497 | 5 | 0 | 1 | 497 | 7 | 503 | 1.0e-256 | 895.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049181 | MS.gene59409 | 0.810557 | 1.09E-50 | -1.69E-46 |
| MS.gene049182 | MS.gene59409 | 0.826016 | 3.42E-54 | -1.69E-46 |
| MS.gene050945 | MS.gene59409 | 0.831112 | 2.01E-55 | -1.69E-46 |
| MS.gene051959 | MS.gene59409 | 0.837184 | 6.04E-57 | -1.69E-46 |
| MS.gene051960 | MS.gene59409 | 0.843092 | 1.73E-58 | -1.69E-46 |
| MS.gene052040 | MS.gene59409 | 0.802451 | 5.58E-49 | -1.69E-46 |
| MS.gene052533 | MS.gene59409 | 0.824217 | 9.10E-54 | -1.69E-46 |
| MS.gene054413 | MS.gene59409 | 0.837566 | 4.82E-57 | -1.69E-46 |
| MS.gene055150 | MS.gene59409 | 0.83804 | 3.64E-57 | -1.69E-46 |
| MS.gene056185 | MS.gene59409 | 0.800932 | 1.14E-48 | -1.69E-46 |
| MS.gene057001 | MS.gene59409 | 0.810925 | 9.05E-51 | -1.69E-46 |
| MS.gene057148 | MS.gene59409 | -0.846632 | 1.92E-59 | -1.69E-46 |
| MS.gene057174 | MS.gene59409 | 0.825107 | 5.61E-54 | -1.69E-46 |
| MS.gene058095 | MS.gene59409 | 0.811754 | 5.98E-51 | -1.69E-46 |
| MS.gene059778 | MS.gene59409 | 0.808436 | 3.10E-50 | -1.69E-46 |
| MS.gene05985 | MS.gene59409 | -0.801476 | 8.84E-49 | -1.69E-46 |
| MS.gene060522 | MS.gene59409 | 0.813415 | 2.59E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene006416 | MS.gene59409 | PPI |
| MS.gene02418 | MS.gene59409 | PPI |
| MS.gene59409 | MS.gene006415 | PPI |
| MS.gene010555 | MS.gene59409 | PPI |
| MS.gene59409 | MS.gene02418 | PPI |
| MS.gene64700 | MS.gene59409 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59409.t1 | MTR_5g020980 | 98.994 | 497 | 5 | 0 | 1 | 497 | 7 | 503 | 0.0 | 1021 |
| MS.gene59409.t1 | MTR_8g076920 | 48.069 | 466 | 230 | 5 | 1 | 463 | 17 | 473 | 1.51e-159 | 462 |
| MS.gene59409.t1 | MTR_2g076970 | 44.540 | 467 | 246 | 6 | 13 | 479 | 9 | 462 | 2.77e-144 | 422 |
| MS.gene59409.t1 | MTR_2g076690 | 44.924 | 463 | 242 | 5 | 1 | 459 | 1 | 454 | 6.58e-144 | 421 |
| MS.gene59409.t1 | MTR_2g076920 | 45.905 | 464 | 235 | 6 | 1 | 462 | 1 | 450 | 5.70e-143 | 419 |
| MS.gene59409.t1 | MTR_2g076710 | 46.429 | 448 | 224 | 9 | 5 | 444 | 3 | 442 | 5.41e-139 | 408 |
| MS.gene59409.t1 | MTR_2g076840 | 45.497 | 433 | 226 | 4 | 12 | 444 | 8 | 430 | 8.40e-137 | 412 |
| MS.gene59409.t1 | MTR_2g076840 | 50.735 | 272 | 126 | 4 | 171 | 440 | 438 | 703 | 4.53e-88 | 285 |
| MS.gene59409.t1 | MTR_2g076900 | 42.921 | 445 | 247 | 3 | 12 | 454 | 8 | 447 | 8.08e-135 | 398 |
| MS.gene59409.t1 | MTR_2g076990 | 46.633 | 401 | 202 | 6 | 62 | 459 | 1 | 392 | 3.06e-126 | 375 |
| MS.gene59409.t1 | MTR_5g020990 | 40.217 | 460 | 251 | 6 | 3 | 444 | 21 | 474 | 8.17e-124 | 370 |
| MS.gene59409.t1 | MTR_2g030420 | 41.387 | 476 | 238 | 9 | 5 | 456 | 7 | 465 | 1.53e-121 | 364 |
| MS.gene59409.t1 | MTR_1g022250 | 41.826 | 471 | 228 | 9 | 7 | 448 | 6 | 459 | 5.20e-120 | 360 |
| MS.gene59409.t1 | MTR_6g009540 | 39.570 | 465 | 239 | 9 | 7 | 440 | 6 | 459 | 1.37e-113 | 345 |
| MS.gene59409.t1 | MTR_4g128260 | 39.752 | 483 | 245 | 8 | 8 | 454 | 5 | 477 | 2.03e-113 | 345 |
| MS.gene59409.t1 | MTR_4g107370 | 38.413 | 479 | 248 | 8 | 5 | 445 | 7 | 476 | 2.61e-112 | 342 |
| MS.gene59409.t1 | MTR_7g008040 | 39.278 | 471 | 241 | 9 | 5 | 441 | 2 | 461 | 4.05e-112 | 343 |
| MS.gene59409.t1 | MTR_6g009520 | 39.655 | 464 | 240 | 8 | 7 | 440 | 8 | 461 | 4.90e-111 | 339 |
| MS.gene59409.t1 | MTR_6g009720 | 37.712 | 472 | 244 | 7 | 7 | 439 | 8 | 468 | 6.10e-108 | 331 |
| MS.gene59409.t1 | MTR_1g022245 | 38.641 | 471 | 239 | 8 | 7 | 440 | 4 | 461 | 2.03e-106 | 326 |
| MS.gene59409.t1 | MTR_6g009553 | 37.473 | 459 | 234 | 7 | 24 | 440 | 1 | 448 | 5.79e-104 | 319 |
| MS.gene59409.t1 | MTR_6g042290 | 39.640 | 444 | 237 | 6 | 13 | 440 | 23 | 451 | 1.84e-103 | 319 |
| MS.gene59409.t1 | MTR_6g009770 | 38.584 | 438 | 220 | 6 | 41 | 440 | 21 | 447 | 4.42e-102 | 315 |
| MS.gene59409.t1 | MTR_3g103150 | 47.931 | 290 | 140 | 3 | 162 | 447 | 1 | 283 | 1.58e-99 | 301 |
| MS.gene59409.t1 | MTR_2g061820 | 36.807 | 451 | 243 | 8 | 17 | 440 | 9 | 444 | 1.76e-96 | 301 |
| MS.gene59409.t1 | MTR_6g009510 | 37.300 | 437 | 212 | 7 | 13 | 440 | 23 | 406 | 4.66e-92 | 288 |
| MS.gene59409.t1 | MTR_6g009660 | 35.874 | 446 | 223 | 13 | 12 | 440 | 12 | 411 | 3.78e-80 | 257 |
| MS.gene59409.t1 | MTR_5g021020 | 33.333 | 459 | 227 | 13 | 3 | 447 | 19 | 412 | 2.92e-78 | 251 |
| MS.gene59409.t1 | MTR_7g117950 | 32.658 | 395 | 221 | 10 | 57 | 447 | 56 | 409 | 3.31e-65 | 218 |
| MS.gene59409.t1 | MTR_3g092060 | 33.424 | 368 | 209 | 9 | 65 | 428 | 66 | 401 | 1.59e-63 | 214 |
| MS.gene59409.t1 | MTR_8g027200 | 34.884 | 301 | 157 | 5 | 149 | 447 | 129 | 392 | 5.45e-48 | 172 |
| MS.gene59409.t1 | MTR_5g021000 | 59.048 | 105 | 42 | 1 | 337 | 440 | 1 | 105 | 8.36e-41 | 144 |
| MS.gene59409.t1 | MTR_5g020720 | 41.304 | 184 | 88 | 5 | 268 | 447 | 25 | 192 | 3.66e-37 | 135 |
| MS.gene59409.t1 | MTR_1g011680 | 48.246 | 114 | 58 | 1 | 327 | 440 | 19 | 131 | 4.35e-29 | 113 |
| MS.gene59409.t1 | MTR_5g021010 | 55.056 | 89 | 39 | 1 | 354 | 441 | 34 | 122 | 1.75e-28 | 109 |
| MS.gene59409.t1 | MTR_3g117230 | 39.216 | 153 | 74 | 7 | 235 | 376 | 166 | 310 | 1.66e-15 | 79.0 |
| MS.gene59409.t1 | MTR_3g112260 | 38.562 | 153 | 75 | 7 | 235 | 376 | 163 | 307 | 2.28e-15 | 78.2 |
| MS.gene59409.t1 | MTR_7g010800 | 36.612 | 183 | 102 | 6 | 209 | 383 | 207 | 383 | 4.68e-15 | 78.2 |
| MS.gene59409.t1 | MTR_3g062510 | 34.731 | 167 | 88 | 6 | 220 | 374 | 171 | 328 | 8.51e-15 | 76.6 |
| MS.gene59409.t1 | MTR_3g062510 | 34.731 | 167 | 88 | 6 | 220 | 374 | 171 | 328 | 1.23e-14 | 75.9 |
| MS.gene59409.t1 | MTR_7g099640 | 34.783 | 161 | 92 | 5 | 223 | 375 | 202 | 357 | 8.54e-14 | 73.9 |
| MS.gene59409.t1 | MTR_7g099640 | 34.783 | 161 | 92 | 5 | 223 | 375 | 202 | 357 | 1.09e-13 | 73.2 |
| MS.gene59409.t1 | MTR_1g069105 | 33.951 | 162 | 94 | 5 | 223 | 376 | 203 | 359 | 1.38e-13 | 72.8 |
| MS.gene59409.t1 | MTR_1g069105 | 34.161 | 161 | 93 | 5 | 223 | 375 | 203 | 358 | 1.78e-13 | 72.8 |
| MS.gene59409.t1 | MTR_4g094270 | 31.429 | 175 | 108 | 5 | 208 | 374 | 156 | 326 | 3.21e-13 | 72.0 |
| MS.gene59409.t1 | MTR_1g083330 | 31.792 | 173 | 97 | 7 | 223 | 383 | 182 | 345 | 3.67e-13 | 71.6 |
| MS.gene59409.t1 | MTR_4g033235 | 31.792 | 173 | 97 | 7 | 223 | 383 | 183 | 346 | 4.90e-13 | 71.2 |
| MS.gene59409.t1 | MTR_1g113750 | 39.623 | 106 | 52 | 5 | 370 | 465 | 16 | 119 | 1.23e-12 | 65.5 |
| MS.gene59409.t1 | MTR_2g076820 | 46.875 | 64 | 33 | 1 | 370 | 433 | 1 | 63 | 2.23e-12 | 62.8 |
| MS.gene59409.t1 | MTR_7g096060 | 34.659 | 176 | 96 | 8 | 210 | 374 | 242 | 409 | 5.25e-12 | 68.9 |
| MS.gene59409.t1 | MTR_6g059690 | 33.333 | 183 | 103 | 8 | 203 | 374 | 192 | 366 | 5.63e-12 | 68.6 |
| MS.gene59409.t1 | MTR_7g078570 | 28.800 | 250 | 154 | 10 | 210 | 441 | 194 | 437 | 1.59e-11 | 67.0 |
| MS.gene59409.t1 | MTR_3g104480 | 28.814 | 177 | 110 | 5 | 224 | 392 | 237 | 405 | 1.98e-11 | 67.0 |
| MS.gene59409.t1 | MTR_7g089040 | 31.765 | 170 | 94 | 7 | 219 | 380 | 401 | 556 | 3.76e-11 | 66.2 |
| MS.gene59409.t1 | MTR_4g064350 | 31.841 | 201 | 118 | 8 | 203 | 392 | 315 | 507 | 3.84e-11 | 66.2 |
| MS.gene59409.t1 | MTR_7g088850 | 29.375 | 160 | 99 | 5 | 237 | 387 | 311 | 465 | 4.07e-11 | 65.9 |
| MS.gene59409.t1 | MTR_8g099605 | 27.919 | 197 | 112 | 7 | 224 | 395 | 419 | 610 | 7.36e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59409.t1 | AT5G17760 | 54.412 | 476 | 195 | 7 | 1 | 462 | 7 | 474 | 3.15e-178 | 510 |
| MS.gene59409.t1 | AT5G17740 | 52.463 | 467 | 198 | 8 | 1 | 453 | 7 | 463 | 5.56e-173 | 498 |
| MS.gene59409.t1 | AT3G50930 | 49.790 | 476 | 228 | 4 | 1 | 468 | 55 | 527 | 1.42e-164 | 478 |
| MS.gene59409.t1 | AT5G17730 | 51.770 | 452 | 201 | 7 | 1 | 445 | 7 | 448 | 1.51e-164 | 474 |
| MS.gene59409.t1 | AT2G18190 | 47.862 | 491 | 220 | 6 | 3 | 484 | 11 | 474 | 1.06e-162 | 470 |
| MS.gene59409.t1 | AT2G18193 | 50.679 | 442 | 198 | 4 | 10 | 445 | 17 | 444 | 3.03e-162 | 469 |
| MS.gene59409.t1 | AT3G50940 | 50.000 | 422 | 204 | 4 | 22 | 443 | 30 | 444 | 2.75e-156 | 452 |
| MS.gene59409.t1 | AT5G17750 | 47.880 | 401 | 175 | 4 | 1 | 398 | 7 | 376 | 2.04e-139 | 407 |
| MS.gene59409.t1 | AT5G40000 | 39.095 | 486 | 239 | 11 | 8 | 464 | 8 | 465 | 2.91e-116 | 350 |
| MS.gene59409.t1 | AT5G17760 | 52.795 | 322 | 138 | 3 | 1 | 314 | 7 | 322 | 9.06e-116 | 345 |
| MS.gene59409.t1 | AT1G43910 | 40.812 | 468 | 231 | 8 | 1 | 445 | 8 | 452 | 1.79e-115 | 349 |
| MS.gene59409.t1 | AT4G05380 | 42.516 | 461 | 230 | 12 | 1 | 444 | 9 | 451 | 1.85e-115 | 348 |
| MS.gene59409.t1 | AT3G28600 | 40.000 | 470 | 229 | 10 | 9 | 446 | 5 | 453 | 1.04e-113 | 344 |
| MS.gene59409.t1 | AT4G25835 | 40.498 | 442 | 229 | 5 | 8 | 425 | 5 | 436 | 1.18e-113 | 345 |
| MS.gene59409.t1 | AT3G28610 | 40.000 | 465 | 226 | 9 | 11 | 443 | 6 | 449 | 3.04e-113 | 343 |
| MS.gene59409.t1 | AT3G28540 | 39.744 | 468 | 237 | 8 | 1 | 437 | 1 | 454 | 3.23e-113 | 344 |
| MS.gene59409.t1 | AT3G28540 | 39.744 | 468 | 237 | 8 | 1 | 437 | 1 | 454 | 3.58e-113 | 344 |
| MS.gene59409.t1 | AT5G57480 | 39.278 | 471 | 238 | 8 | 8 | 442 | 5 | 463 | 8.51e-111 | 338 |
| MS.gene59409.t1 | AT3G28510 | 38.723 | 470 | 252 | 7 | 1 | 443 | 1 | 461 | 3.28e-109 | 335 |
| MS.gene59409.t1 | AT4G30250 | 40.127 | 471 | 238 | 8 | 5 | 442 | 2 | 461 | 3.05e-107 | 329 |
| MS.gene59409.t1 | AT4G30250 | 40.127 | 471 | 238 | 8 | 5 | 442 | 4 | 463 | 4.33e-107 | 329 |
| MS.gene59409.t1 | AT5G40010 | 38.022 | 455 | 241 | 8 | 7 | 430 | 7 | 451 | 2.42e-106 | 327 |
| MS.gene59409.t1 | AT3G28570 | 38.723 | 470 | 233 | 11 | 12 | 459 | 10 | 446 | 4.69e-103 | 316 |
| MS.gene59409.t1 | AT3G28570 | 38.723 | 470 | 233 | 11 | 12 | 459 | 17 | 453 | 6.88e-103 | 316 |
| MS.gene59409.t1 | AT3G28580 | 37.527 | 461 | 242 | 11 | 1 | 430 | 1 | 446 | 6.97e-101 | 312 |
| MS.gene59409.t1 | AT3G28520 | 37.449 | 486 | 246 | 11 | 16 | 457 | 2 | 473 | 1.43e-98 | 305 |
| MS.gene59409.t1 | AT3G28600 | 50.853 | 293 | 125 | 5 | 172 | 446 | 123 | 414 | 4.01e-97 | 300 |
| MS.gene59409.t1 | AT3G29800 | 36.853 | 464 | 226 | 14 | 20 | 473 | 5 | 411 | 2.37e-89 | 280 |
| MS.gene59409.t1 | AT3G28580 | 35.892 | 443 | 252 | 11 | 1 | 430 | 1 | 424 | 4.29e-89 | 281 |
| MS.gene59409.t1 | AT2G46620 | 35.864 | 382 | 202 | 10 | 57 | 428 | 55 | 403 | 1.71e-72 | 238 |
| MS.gene59409.t1 | AT4G05340 | 63.636 | 77 | 28 | 0 | 318 | 394 | 17 | 93 | 2.77e-28 | 108 |
| MS.gene59409.t1 | AT3G28560 | 27.679 | 224 | 143 | 5 | 1 | 218 | 1 | 211 | 7.17e-23 | 98.2 |
| MS.gene59409.t1 | AT5G43010 | 38.562 | 153 | 75 | 7 | 235 | 376 | 163 | 307 | 3.43e-15 | 77.8 |
| MS.gene59409.t1 | AT1G45000 | 38.562 | 153 | 75 | 7 | 235 | 376 | 163 | 307 | 5.85e-15 | 77.0 |
| MS.gene59409.t1 | AT5G58290 | 34.731 | 167 | 88 | 6 | 220 | 374 | 164 | 321 | 8.21e-15 | 76.6 |
| MS.gene59409.t1 | AT2G20140 | 34.783 | 161 | 92 | 5 | 223 | 375 | 200 | 355 | 3.64e-14 | 75.1 |
| MS.gene59409.t1 | AT4G29040 | 34.783 | 161 | 92 | 5 | 223 | 375 | 200 | 355 | 5.84e-14 | 74.3 |
| MS.gene59409.t1 | AT1G09100 | 32.370 | 173 | 96 | 7 | 223 | 383 | 182 | 345 | 7.83e-14 | 73.9 |
| MS.gene59409.t1 | AT5G20000 | 31.217 | 189 | 117 | 6 | 208 | 387 | 158 | 342 | 3.71e-13 | 71.6 |
| MS.gene59409.t1 | AT5G19990 | 31.217 | 189 | 117 | 6 | 208 | 387 | 158 | 342 | 3.78e-13 | 71.6 |
| MS.gene59409.t1 | AT5G19990 | 31.217 | 189 | 117 | 6 | 208 | 387 | 158 | 342 | 3.78e-13 | 71.6 |
| MS.gene59409.t1 | AT5G19990 | 31.429 | 175 | 108 | 5 | 208 | 374 | 100 | 270 | 5.93e-13 | 70.9 |
| MS.gene59409.t1 | AT3G02450 | 32.995 | 197 | 108 | 8 | 237 | 422 | 359 | 542 | 1.78e-12 | 70.1 |
| MS.gene59409.t1 | AT3G53230 | 31.288 | 163 | 96 | 4 | 223 | 377 | 220 | 374 | 3.11e-11 | 66.6 |
Find 75 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAATAACATTCTTCATTTC+TGG | 0.121975 | 5.4:-12824146 | None:intergenic |
| TACTGCTAATAGGTCTATTT+TGG | 0.170805 | 5.4:+12824376 | MS.gene59409:CDS |
| TCCCATGATAATCCTTTCTT+TGG | 0.247677 | 5.4:+12826684 | MS.gene59409:CDS |
| CTCACTATTCGGTTAGAAAA+AGG | 0.294914 | 5.4:+12823786 | MS.gene59409:CDS |
| TTAACTTTATAGATGGATTA+TGG | 0.296200 | 5.4:+12826502 | MS.gene59409:CDS |
| AAAGTATAAGGAAGTTGTTT+TGG | 0.306485 | 5.4:+12823962 | MS.gene59409:CDS |
| TGGATGCAGTTGACGCTATC+TGG | 0.331920 | 5.4:+12826474 | MS.gene59409:intron |
| TTGTATGGTCCTCCAGGAAC+TGG | 0.332354 | 5.4:+12824245 | MS.gene59409:CDS |
| AAACTAGATTTCCCAGTTCC+TGG | 0.339978 | 5.4:-12824257 | None:intergenic |
| GGATTACTTAACTTTATAGA+TGG | 0.342287 | 5.4:+12826495 | MS.gene59409:CDS |
| GTTGTTGAAGAGGAAGAAAA+TGG | 0.344152 | 5.4:+12826812 | MS.gene59409:CDS |
| AACACTGCTTATTGTTATAG+TGG | 0.352047 | 5.4:+12824062 | MS.gene59409:CDS |
| ATAAGAAAGTTGGTAGGGCT+TGG | 0.373964 | 5.4:+12824207 | MS.gene59409:CDS |
| ATGTGCATGTCCATTCTTCC+TGG | 0.376522 | 5.4:-12826600 | None:intergenic |
| CATCATGCTGCTTCGTTCCA+TGG | 0.388268 | 5.4:+12823548 | MS.gene59409:CDS |
| TGCTTCTTGCTACTGCTAAT+AGG | 0.398837 | 5.4:+12824366 | MS.gene59409:CDS |
| CCTTTCTTTGGAGAGATTGA+AGG | 0.403654 | 5.4:+12826696 | MS.gene59409:CDS |
| ATGTCTTATTGTTCTTATGA+AGG | 0.415116 | 5.4:+12826627 | MS.gene59409:CDS |
| CTGGATCTAATCTTTCTTTG+TGG | 0.418635 | 5.4:-12826566 | None:intergenic |
| ATCTAGTTTGATTGCTGCTA+TGG | 0.422293 | 5.4:+12824271 | MS.gene59409:CDS |
| AACATTTGAAACACTTGCAA+TGG | 0.424026 | 5.4:+12824121 | MS.gene59409:CDS |
| ATTGTTATAGTGGTGTGAAA+TGG | 0.427762 | 5.4:+12824072 | MS.gene59409:CDS |
| AAACGTGGTTATTTGTTGTA+TGG | 0.444569 | 5.4:+12824230 | MS.gene59409:CDS |
| CTTCCTGGCCTTAAAAGTGC+TGG | 0.444730 | 5.4:-12826585 | None:intergenic |
| TTGTTATAGTGGTGTGAAAT+GGG | 0.444869 | 5.4:+12824073 | MS.gene59409:CDS |
| CTCCAAAGAAAGGATTATCA+TGG | 0.452994 | 5.4:-12826686 | None:intergenic |
| AATTAACCGATATGTATAAC+GGG | 0.453542 | 5.4:+12823814 | MS.gene59409:CDS |
| TTCGTTCTTCATCAATTCCT+CGG | 0.463547 | 5.4:-12826757 | None:intergenic |
| CCTTCTCCATGCCTCCTCTC+AGG | 0.464945 | 5.4:-12824431 | None:intergenic |
| ATAACGGGTTTCCTCTCAAA+TGG | 0.468393 | 5.4:+12823829 | MS.gene59409:CDS |
| AATTCCTCGGCAACTTGTGC+AGG | 0.473590 | 5.4:-12826744 | None:intergenic |
| TATTTGTTGTATGGTCCTCC+AGG | 0.478870 | 5.4:+12824239 | MS.gene59409:CDS |
| TAAACAGCAAAATGATATAC+AGG | 0.483102 | 5.4:+12824457 | MS.gene59409:CDS |
| CTATGATGAGTGTGAGTGTA+GGG | 0.494050 | 5.4:-12823644 | None:intergenic |
| CCTTCAATCTCTCCAAAGAA+AGG | 0.498070 | 5.4:-12826696 | None:intergenic |
| AGGAAACCCGTTATACATAT+CGG | 0.498891 | 5.4:-12823820 | None:intergenic |
| GATATATTTGATCTTCAACT+TGG | 0.500692 | 5.4:+12824311 | MS.gene59409:CDS |
| CTCATCATAGAAGAATCAAC+AGG | 0.511570 | 5.4:+12823657 | MS.gene59409:CDS |
| AAATTAACCGATATGTATAA+CGG | 0.515674 | 5.4:+12823813 | MS.gene59409:CDS |
| CAGCATGATGGAAGCTGTCA+TGG | 0.517798 | 5.4:-12823535 | None:intergenic |
| AGGTAGCCACGGATTGGTTG+AGG | 0.525058 | 5.4:-12823585 | None:intergenic |
| ATGTTGTTGTTACTCAAAGA+AGG | 0.525296 | 5.4:+12826940 | MS.gene59409:CDS |
| TAAGCTGAGAAAATTGTAGA+TGG | 0.528567 | 5.4:-12823507 | None:intergenic |
| GACGCGGAGGCGACGCTCGA+AGG | 0.532422 | 5.4:+12826780 | MS.gene59409:CDS |
| TTAGCTTTATCAAGAATGAA+AGG | 0.540681 | 5.4:-12823996 | None:intergenic |
| GCAAGTGTTTCAAATGTTGA+AGG | 0.550183 | 5.4:-12824116 | None:intergenic |
| TTGTAAAGGTAGCCACGGAT+TGG | 0.558453 | 5.4:-12823591 | None:intergenic |
| GGTAGCGGAAGGTGTTGTAA+AGG | 0.559219 | 5.4:-12823605 | None:intergenic |
| GAGAAAATTGTAGATGGTGA+AGG | 0.561688 | 5.4:-12823501 | None:intergenic |
| GATTTGTCAAGTTGTTGAAG+AGG | 0.562772 | 5.4:+12826802 | MS.gene59409:CDS |
| AGGAATGAGTTCTTGTGCCA+TGG | 0.564959 | 5.4:-12823565 | None:intergenic |
| CCTGAGAGGAGGCATGGAGA+AGG | 0.567782 | 5.4:+12824431 | MS.gene59409:CDS |
| TCCAAAGAAAGGATTATCAT+GGG | 0.577137 | 5.4:-12826685 | None:intergenic |
| GATATTCCTGAGAGGAGGCA+TGG | 0.578540 | 5.4:+12824425 | MS.gene59409:CDS |
| GATGGATTATGGTCAAGTTG+TGG | 0.580818 | 5.4:+12826513 | MS.gene59409:CDS |
| CAAGTGTTTCAAATGTTGAA+GGG | 0.590645 | 5.4:-12824115 | None:intergenic |
| CATGGAACGAAGCAGCATGA+TGG | 0.591190 | 5.4:-12823547 | None:intergenic |
| CAAATAAATCTCCATTTGAG+AGG | 0.594499 | 5.4:-12823840 | None:intergenic |
| TGTATGGTCCTCCAGGAACT+GGG | 0.595574 | 5.4:+12824246 | MS.gene59409:CDS |
| GTTGGTAGGGCTTGGAAACG+TGG | 0.595739 | 5.4:+12824215 | MS.gene59409:CDS |
| ACTCAGCTGCATCATAGACT+TGG | 0.603542 | 5.4:-12823692 | None:intergenic |
| TTGAAGAGGAAGAAAATGGA+AGG | 0.607954 | 5.4:+12826816 | MS.gene59409:CDS |
| AGTGTGAGTGTAGGGGAACG+TGG | 0.609142 | 5.4:-12823636 | None:intergenic |
| AGGACAAGAGGTTATAAGAG+AGG | 0.609200 | 5.4:+12826960 | MS.gene59409:CDS |
| TCTATGATGAGTGTGAGTGT+AGG | 0.612777 | 5.4:-12823645 | None:intergenic |
| GTTACTCAAAGAAGGACAAG+AGG | 0.617295 | 5.4:+12826948 | MS.gene59409:CDS |
| AGGTGTTGTAAAGGTAGCCA+CGG | 0.626883 | 5.4:-12823596 | None:intergenic |
| CTCATTCCTCAACCAATCCG+TGG | 0.640131 | 5.4:+12823579 | MS.gene59409:CDS |
| GATGAAGAACGAAGACGCGG+AGG | 0.643880 | 5.4:+12826767 | MS.gene59409:CDS |
| AACACCTGCACAAGTTGCCG+AGG | 0.645385 | 5.4:+12826740 | MS.gene59409:CDS |
| GTATTGATATTCCTGAGAGG+AGG | 0.657296 | 5.4:+12824420 | MS.gene59409:CDS |
| CTAGATTTCCCAGTTCCTGG+AGG | 0.685154 | 5.4:-12824254 | None:intergenic |
| TATGATGAGTGTGAGTGTAG+GGG | 0.700365 | 5.4:-12823643 | None:intergenic |
| GCAGTATTGATATTCCTGAG+AGG | 0.713312 | 5.4:+12824417 | MS.gene59409:CDS |
| ATTGATGAAGAACGAAGACG+CGG | 0.719308 | 5.4:+12826764 | MS.gene59409:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGAAATTTCTATTTAATT+TGG | + | chr5.4:12825120-12825139 | MS.gene59409:intron | 10.0% |
| !! | ATAAATTATGACATGAAATT+AGG | + | chr5.4:12825048-12825067 | MS.gene59409:intron | 15.0% |
| !! | GTATCAAAAAATATATGTAT+AGG | - | chr5.4:12824707-12824726 | None:intergenic | 15.0% |
| !! | TTAAATTGTATAAATATCCA+CGG | - | chr5.4:12826045-12826064 | None:intergenic | 15.0% |
| !! | TTTAATTAACAAACATAAAC+AGG | - | chr5.4:12824598-12824617 | None:intergenic | 15.0% |
| !!! | AAATTGATTTCATTTTAGAT+AGG | + | chr5.4:12826320-12826339 | MS.gene59409:intron | 15.0% |
| !!! | TAATTGATTTCATTTTAGAT+GGG | + | chr5.4:12826293-12826312 | MS.gene59409:intron | 15.0% |
| !!! | TTAATTGATTTCATTTTAGA+TGG | + | chr5.4:12826292-12826311 | MS.gene59409:intron | 15.0% |
| !!! | TTTTTCAACATATTAGAAAA+TGG | + | chr5.4:12824906-12824925 | MS.gene59409:intron | 15.0% |
| !! | AAATTAACCGATATGTATAA+CGG | + | chr5.4:12823813-12823832 | MS.gene59409:CDS | 20.0% |
| !! | AATAAGAAGTGAGAAAAATA+AGG | - | chr5.4:12825409-12825428 | None:intergenic | 20.0% |
| !! | ATAATAACATTCTTCATTTC+TGG | - | chr5.4:12824149-12824168 | None:intergenic | 20.0% |
| !! | CAATAATTGGTTAAGAAATT+TGG | + | chr5.4:12825684-12825703 | MS.gene59409:intron | 20.0% |
| !!! | AAGTTTTGACAAAAAGTATA+AGG | + | chr5.4:12823950-12823969 | MS.gene59409:CDS | 20.0% |
| !!! | AATTTTTTTATCAGTAGCAA+TGG | + | chr5.4:12824960-12824979 | MS.gene59409:intron | 20.0% |
| !!! | CTAAAAAAATATGCCATTTT+AGG | - | chr5.4:12825231-12825250 | None:intergenic | 20.0% |
| !!! | CTTTTATAAATGCATTGATA+TGG | - | chr5.4:12824729-12824748 | None:intergenic | 20.0% |
| !!! | TAGAGTCATTTTCTTATTAT+TGG | + | chr5.4:12825552-12825571 | MS.gene59409:intron | 20.0% |
| !!! | TTAACTTTATAGATGGATTA+TGG | + | chr5.4:12826502-12826521 | MS.gene59409:CDS | 20.0% |
| !!! | TTATTTTTCTCACTTCTTAT+TGG | + | chr5.4:12825408-12825427 | MS.gene59409:intron | 20.0% |
| ! | AAGAAAAAGAATTCCAATTG+TGG | + | chr5.4:12825165-12825184 | MS.gene59409:intron | 25.0% |
| ! | AAGAGAAAAAACTCACTATT+CGG | + | chr5.4:12823775-12823794 | MS.gene59409:CDS | 25.0% |
| ! | AATTAACCGATATGTATAAC+GGG | + | chr5.4:12823814-12823833 | MS.gene59409:CDS | 25.0% |
| ! | AGCATATTACTAGAATTTCT+AGG | - | chr5.4:12824554-12824573 | None:intergenic | 25.0% |
| ! | CTATGTATGTAAAACAGAAA+GGG | - | chr5.4:12825900-12825919 | None:intergenic | 25.0% |
| ! | GATATATTTGATCTTCAACT+TGG | + | chr5.4:12824311-12824330 | MS.gene59409:CDS | 25.0% |
| ! | GGATTACTTAACTTTATAGA+TGG | + | chr5.4:12826495-12826514 | MS.gene59409:CDS | 25.0% |
| ! | TAAACAGCAAAATGATATAC+AGG | + | chr5.4:12824457-12824476 | MS.gene59409:CDS | 25.0% |
| ! | TACAGTTACTCAAAAAGAAT+TGG | - | chr5.4:12826270-12826289 | None:intergenic | 25.0% |
| ! | TGTCCTTGAAATTATAATGT+TGG | + | chr5.4:12826381-12826400 | MS.gene59409:intron | 25.0% |
| ! | TTCGTGTAAAACTTCTATTA+TGG | + | chr5.4:12825994-12826013 | MS.gene59409:intron | 25.0% |
| ! | TTCTTATTGGTCAAAAACAA+TGG | + | chr5.4:12825421-12825440 | MS.gene59409:intron | 25.0% |
| !! | AAAGTATAAGGAAGTTGTTT+TGG | + | chr5.4:12823962-12823981 | MS.gene59409:CDS | 25.0% |
| !! | ATAATAGAAGTTTTACACGA+AGG | - | chr5.4:12825995-12826014 | None:intergenic | 25.0% |
| !! | ATGTCTTATTGTTCTTATGA+AGG | + | chr5.4:12826627-12826646 | MS.gene59409:CDS | 25.0% |
| !! | ATTTCTCATCTTGATTTTGA+TGG | + | chr5.4:12826450-12826469 | MS.gene59409:intron | 25.0% |
| !!! | AACCACTTTTTGATAACTTT+TGG | - | chr5.4:12825506-12825525 | None:intergenic | 25.0% |
| !!! | AATTTTAGCTTCAAACTACT+TGG | + | chr5.4:12826656-12826675 | MS.gene59409:CDS | 25.0% |
| !!! | AGAGAGTTTTATAAGAAAGT+TGG | + | chr5.4:12824197-12824216 | MS.gene59409:CDS | 25.0% |
| !!! | AGTTTTATAAGAAAGTTGGT+AGG | + | chr5.4:12824201-12824220 | MS.gene59409:CDS | 25.0% |
| !!! | ATAGTGAGTTTTTTCTCTTT+TGG | - | chr5.4:12823774-12823793 | None:intergenic | 25.0% |
| !!! | ATTTTGAGTCTTTCATTTTC+AGG | - | chr5.4:12823741-12823760 | None:intergenic | 25.0% |
| !!! | ATTTTTTTCTAGATCCACTA+AGG | - | chr5.4:12825019-12825038 | None:intergenic | 25.0% |
| !!! | CTAATTTTTTCACAACCAAT+TGG | + | chr5.4:12824678-12824697 | MS.gene59409:intron | 25.0% |
| !!! | GTTTTAGTTCTTGTTGATTT+TGG | + | chr5.4:12825076-12825095 | MS.gene59409:intron | 25.0% |
| !!! | GTTTTATAAGAAAGTTGGTA+GGG | + | chr5.4:12824202-12824221 | MS.gene59409:CDS | 25.0% |
| !!! | TAGTGAGTTTTTTCTCTTTT+GGG | - | chr5.4:12823773-12823792 | None:intergenic | 25.0% |
| !!! | TTAGCTTTATCAAGAATGAA+AGG | - | chr5.4:12823999-12824018 | None:intergenic | 25.0% |
| !!! | TTTTGAGTCTTTCATTTTCA+GGG | - | chr5.4:12823740-12823759 | None:intergenic | 25.0% |
| AAAACAATGGAGAGAGAAAA+AGG | + | chr5.4:12825434-12825453 | MS.gene59409:intron | 30.0% | |
| AACACTGCTTATTGTTATAG+TGG | + | chr5.4:12824062-12824081 | MS.gene59409:CDS | 30.0% | |
| AATAGCAAAGTGTGAGTTAT+TGG | + | chr5.4:12825205-12825224 | MS.gene59409:intron | 30.0% | |
| AGCAATGGAATTCAATATTC+CGG | + | chr5.4:12824975-12824994 | MS.gene59409:intron | 30.0% | |
| ATTGTTATAGTGGTGTGAAA+TGG | + | chr5.4:12824072-12824091 | MS.gene59409:CDS | 30.0% | |
| CAAATAAATCTCCATTTGAG+AGG | - | chr5.4:12823843-12823862 | None:intergenic | 30.0% | |
| CAAGTGTTTCAAATGTTGAA+GGG | - | chr5.4:12824118-12824137 | None:intergenic | 30.0% | |
| CGACCAACATTATAATTTCA+AGG | - | chr5.4:12826387-12826406 | None:intergenic | 30.0% | |
| CTAACGTGTAGTTCAATAAT+TGG | + | chr5.4:12825671-12825690 | MS.gene59409:intron | 30.0% | |
| GCTATGTATGTAAAACAGAA+AGG | - | chr5.4:12825901-12825920 | None:intergenic | 30.0% | |
| GTCCAAAAGTTATCAAAAAG+TGG | + | chr5.4:12825501-12825520 | MS.gene59409:intron | 30.0% | |
| TAAGCTGAGAAAATTGTAGA+TGG | - | chr5.4:12823510-12823529 | None:intergenic | 30.0% | |
| TATATGTATAGGTCTCCAAT+TGG | - | chr5.4:12824696-12824715 | None:intergenic | 30.0% | |
| TCAACAAAGTTGTCATCAAA+TGG | - | chr5.4:12825383-12825402 | None:intergenic | 30.0% | |
| TCCAAAGAAAGGATTATCAT+GGG | - | chr5.4:12826688-12826707 | None:intergenic | 30.0% | |
| TCTTAGTGTAATAGTATGCT+TGG | - | chr5.4:12824848-12824867 | None:intergenic | 30.0% | |
| TGTGTGCAAGAGAAAATTAA+AGG | - | chr5.4:12825591-12825610 | None:intergenic | 30.0% | |
| TTGTTATAGTGGTGTGAAAT+GGG | + | chr5.4:12824073-12824092 | MS.gene59409:CDS | 30.0% | |
| ! | AACATTTGAAACACTTGCAA+TGG | + | chr5.4:12824121-12824140 | MS.gene59409:CDS | 30.0% |
| ! | ATGTTGTTGTTACTCAAAGA+AGG | + | chr5.4:12826940-12826959 | MS.gene59409:CDS | 30.0% |
| ! | TACTGCTAATAGGTCTATTT+TGG | + | chr5.4:12824376-12824395 | MS.gene59409:CDS | 30.0% |
| ! | TGATGATGATATATGCCATA+GGG | - | chr5.4:12825782-12825801 | None:intergenic | 30.0% |
| ! | TGTTTTACATACATAGCAAG+AGG | + | chr5.4:12825904-12825923 | MS.gene59409:intron | 30.0% |
| ! | TTTGAGTCTTTCATTTTCAG+GGG | - | chr5.4:12823739-12823758 | None:intergenic | 30.0% |
| ! | TTTTCATCAAAGATATTCCG+TGG | + | chr5.4:12826025-12826044 | MS.gene59409:intron | 30.0% |
| !! | AAACGTGGTTATTTGTTGTA+TGG | + | chr5.4:12824230-12824249 | MS.gene59409:CDS | 30.0% |
| !! | CAAAGGTCTTTGTTATTGAA+TGG | + | chr5.4:12825949-12825968 | MS.gene59409:intron | 30.0% |
| !! | TTGATGATGATATATGCCAT+AGG | - | chr5.4:12825783-12825802 | None:intergenic | 30.0% |
| !!! | GGCATATTTTTTTAGTAGCT+AGG | + | chr5.4:12825236-12825255 | MS.gene59409:intron | 30.0% |
| !!! | TTGATAGTGAAATGGCATTT+TGG | - | chr5.4:12825824-12825843 | None:intergenic | 30.0% |
| ACACAGTCATATTCCACAAT+TGG | - | chr5.4:12825181-12825200 | None:intergenic | 35.0% | |
| AGGAAACCCGTTATACATAT+CGG | - | chr5.4:12823823-12823842 | None:intergenic | 35.0% | |
| CAGCAAAATGATATACAGGT+TGG | + | chr5.4:12824461-12824480 | MS.gene59409:intron | 35.0% | |
| CTCACTATTCGGTTAGAAAA+AGG | + | chr5.4:12823786-12823805 | MS.gene59409:CDS | 35.0% | |
| CTCATCATAGAAGAATCAAC+AGG | + | chr5.4:12823657-12823676 | MS.gene59409:CDS | 35.0% | |
| CTCCAAAGAAAGGATTATCA+TGG | - | chr5.4:12826689-12826708 | None:intergenic | 35.0% | |
| CTGGATCTAATCTTTCTTTG+TGG | - | chr5.4:12826569-12826588 | None:intergenic | 35.0% | |
| GAGAAAATTGTAGATGGTGA+AGG | - | chr5.4:12823504-12823523 | None:intergenic | 35.0% | |
| GCAAGTGTTTCAAATGTTGA+AGG | - | chr5.4:12824119-12824138 | None:intergenic | 35.0% | |
| GTTGTTGAAGAGGAAGAAAA+TGG | + | chr5.4:12826812-12826831 | MS.gene59409:CDS | 35.0% | |
| TCCCATGATAATCCTTTCTT+TGG | + | chr5.4:12826684-12826703 | MS.gene59409:CDS | 35.0% | |
| TGAACTACACGTTAGTTCAA+TGG | - | chr5.4:12825666-12825685 | None:intergenic | 35.0% | |
| TTCACTTGATTAGACCTTAG+TGG | + | chr5.4:12825002-12825021 | MS.gene59409:intron | 35.0% | |
| TTCGTTCTTCATCAATTCCT+CGG | - | chr5.4:12826760-12826779 | None:intergenic | 35.0% | |
| TTGAAGAGGAAGAAAATGGA+AGG | + | chr5.4:12826816-12826835 | MS.gene59409:CDS | 35.0% | |
| ! | AATTTTCTCTTGCACACAAG+TGG | + | chr5.4:12825593-12825612 | MS.gene59409:intron | 35.0% |
| ! | ACAACAATCTAAAAAGCGCA+AGG | + | chr5.4:12826872-12826891 | MS.gene59409:CDS | 35.0% |
| ! | ATCTAGTTTGATTGCTGCTA+TGG | + | chr5.4:12824271-12824290 | MS.gene59409:CDS | 35.0% |
| ! | GATTAGATCCAGCACTTTTA+AGG | + | chr5.4:12826577-12826596 | MS.gene59409:CDS | 35.0% |
| ! | GATTTGTCAAGTTGTTGAAG+AGG | + | chr5.4:12826802-12826821 | MS.gene59409:CDS | 35.0% |
| ! | TATTGTCTAAAGCAATTGCG+TGG | - | chr5.4:12825848-12825867 | None:intergenic | 35.0% |
| ! | TGTGAGTTATTGGCCTAAAA+TGG | + | chr5.4:12825215-12825234 | MS.gene59409:intron | 35.0% |
| !! | AGGTCTTTGTTATTGAATGG+TGG | + | chr5.4:12825952-12825971 | MS.gene59409:intron | 35.0% |
| !! | CTCATCTTGATTTTGATGGA+TGG | + | chr5.4:12826454-12826473 | MS.gene59409:intron | 35.0% |
| !! | TTCTCAAAAGCATTACCCTA+TGG | + | chr5.4:12825764-12825783 | MS.gene59409:intron | 35.0% |
| !! | TTGACAATACTTGCTGTCAA+AGG | + | chr5.4:12825932-12825951 | MS.gene59409:intron | 35.0% |
| AAACTAGATTTCCCAGTTCC+TGG | - | chr5.4:12824260-12824279 | None:intergenic | 40.0% | |
| ACACCCTGAATAGGTACATT+GGG | + | chr5.4:12825639-12825658 | MS.gene59409:intron | 40.0% | |
| AGGACAAGAGGTTATAAGAG+AGG | + | chr5.4:12826960-12826979 | MS.gene59409:CDS | 40.0% | |
| ATTGATGAAGAACGAAGACG+CGG | + | chr5.4:12826764-12826783 | MS.gene59409:CDS | 40.0% | |
| CCTTCAATCTCTCCAAAGAA+AGG | - | chr5.4:12826699-12826718 | None:intergenic | 40.0% | |
| CTATGATGAGTGTGAGTGTA+GGG | - | chr5.4:12823647-12823666 | None:intergenic | 40.0% | |
| GCTGAAACTGAGAAAAACAG+TGG | + | chr5.4:12823864-12823883 | MS.gene59409:CDS | 40.0% | |
| GTCTAATCAAGTGAACTTGC+CGG | - | chr5.4:12824997-12825016 | None:intergenic | 40.0% | |
| GTGTCAAGGTCTCAAACAAA+AGG | - | chr5.4:12825308-12825327 | None:intergenic | 40.0% | |
| GTTACTCAAAGAAGGACAAG+AGG | + | chr5.4:12826948-12826967 | MS.gene59409:CDS | 40.0% | |
| TATGATGAGTGTGAGTGTAG+GGG | - | chr5.4:12823646-12823665 | None:intergenic | 40.0% | |
| TCTATGATGAGTGTGAGTGT+AGG | - | chr5.4:12823648-12823667 | None:intergenic | 40.0% | |
| TGCTTCTTGCTACTGCTAAT+AGG | + | chr5.4:12824366-12824385 | MS.gene59409:CDS | 40.0% | |
| ! | ACAATCTAAAAAGCGCAAGG+TGG | + | chr5.4:12826875-12826894 | MS.gene59409:CDS | 40.0% |
| ! | ATTGAATGGTGGAAACCTCA+TGG | + | chr5.4:12825963-12825982 | MS.gene59409:intron | 40.0% |
| ! | CCTTTCTTTGGAGAGATTGA+AGG | + | chr5.4:12826696-12826715 | MS.gene59409:CDS | 40.0% |
| ! | GTATTGATATTCCTGAGAGG+AGG | + | chr5.4:12824420-12824439 | MS.gene59409:CDS | 40.0% |
| ! | TTGAATGGTGGAAACCTCAT+GGG | + | chr5.4:12825964-12825983 | MS.gene59409:intron | 40.0% |
| !! | ATAACGGGTTTCCTCTCAAA+TGG | + | chr5.4:12823829-12823848 | MS.gene59409:CDS | 40.0% |
| !! | ATAAGAAAGTTGGTAGGGCT+TGG | + | chr5.4:12824207-12824226 | MS.gene59409:CDS | 40.0% |
| !! | GATGGATTATGGTCAAGTTG+TGG | + | chr5.4:12826513-12826532 | MS.gene59409:CDS | 40.0% |
| !! | GCAGTATTGATATTCCTGAG+AGG | + | chr5.4:12824417-12824436 | MS.gene59409:CDS | 40.0% |
| !! | TATTTGTTGTATGGTCCTCC+AGG | + | chr5.4:12824239-12824258 | MS.gene59409:CDS | 40.0% |
| !! | TGCGTGGATTGATAGTGAAA+TGG | - | chr5.4:12825832-12825851 | None:intergenic | 40.0% |
| !!! | AACGTGGTTTTATGAGGTAG+CGG | - | chr5.4:12823623-12823642 | None:intergenic | 40.0% |
| !!! | ACTTTTAAGGCCAGGAAGAA+TGG | + | chr5.4:12826590-12826609 | MS.gene59409:CDS | 40.0% |
| ACTCAGCTGCATCATAGACT+TGG | - | chr5.4:12823695-12823714 | None:intergenic | 45.0% | |
| AGGAATGAGTTCTTGTGCCA+TGG | - | chr5.4:12823568-12823587 | None:intergenic | 45.0% | |
| AGTGAACCTGTCAAGTGTCA+AGG | - | chr5.4:12825322-12825341 | None:intergenic | 45.0% | |
| ATGTGCATGTCCATTCTTCC+TGG | - | chr5.4:12826603-12826622 | None:intergenic | 45.0% | |
| CACACCCTGAATAGGTACAT+TGG | + | chr5.4:12825638-12825657 | MS.gene59409:intron | 45.0% | |
| GGTCCCAATGTACCTATTCA+GGG | - | chr5.4:12825645-12825664 | None:intergenic | 45.0% | |
| GTTGGTTGCAAGCAAAAACG+AGG | + | chr5.4:12826897-12826916 | MS.gene59409:CDS | 45.0% | |
| TGAATCAGAACCCACATGCT+AGG | - | chr5.4:12825267-12825286 | None:intergenic | 45.0% | |
| TGGTCCCAATGTACCTATTC+AGG | - | chr5.4:12825646-12825665 | None:intergenic | 45.0% | |
| TTGAGACCTTGACACTTGAC+AGG | + | chr5.4:12825313-12825332 | MS.gene59409:intron | 45.0% | |
| TTGTAAAGGTAGCCACGGAT+TGG | - | chr5.4:12823594-12823613 | None:intergenic | 45.0% | |
| ! | AGGTGTTGTAAAGGTAGCCA+CGG | - | chr5.4:12823599-12823618 | None:intergenic | 45.0% |
| ! | TCTAAAAAGCGCAAGGTGGT+TGG | + | chr5.4:12826879-12826898 | MS.gene59409:CDS | 45.0% |
| !! | ACACTAGCTTGCTCTTGAAG+GGG | - | chr5.4:12826215-12826234 | None:intergenic | 45.0% |
| !! | CACACTAGCTTGCTCTTGAA+GGG | - | chr5.4:12826216-12826235 | None:intergenic | 45.0% |
| !! | TCACACTAGCTTGCTCTTGA+AGG | - | chr5.4:12826217-12826236 | None:intergenic | 45.0% |
| !!! | TAGGGGAACGTGGTTTTATG+AGG | - | chr5.4:12823629-12823648 | None:intergenic | 45.0% |
| !!! | TGGTTTTATGAGGTAGCGGA+AGG | - | chr5.4:12823619-12823638 | None:intergenic | 45.0% |
| AATTCCTCGGCAACTTGTGC+AGG | - | chr5.4:12826747-12826766 | None:intergenic | 50.0% | |
| ACACGAAGGATCATCCCATG+AGG | - | chr5.4:12825981-12826000 | None:intergenic | 50.0% | |
| CATGGAACGAAGCAGCATGA+TGG | - | chr5.4:12823550-12823569 | None:intergenic | 50.0% | |
| CCATAGCACACACCCTGAAT+AGG | + | chr5.4:12825630-12825649 | MS.gene59409:intron | 50.0% | |
| CCTATTCAGGGTGTGTGCTA+TGG | - | chr5.4:12825633-12825652 | None:intergenic | 50.0% | |
| CTAGATTTCCCAGTTCCTGG+AGG | - | chr5.4:12824257-12824276 | None:intergenic | 50.0% | |
| CTCATTCCTCAACCAATCCG+TGG | + | chr5.4:12823579-12823598 | MS.gene59409:CDS | 50.0% | |
| GATATTCCTGAGAGGAGGCA+TGG | + | chr5.4:12824425-12824444 | MS.gene59409:CDS | 50.0% | |
| GCAAGCAAAAACGAGGTGGT+GGG | + | chr5.4:12826904-12826923 | MS.gene59409:CDS | 50.0% | |
| GGTTGCAAGCAAAAACGAGG+TGG | + | chr5.4:12826900-12826919 | MS.gene59409:CDS | 50.0% | |
| TGCAAGCAAAAACGAGGTGG+TGG | + | chr5.4:12826903-12826922 | MS.gene59409:CDS | 50.0% | |
| TGGATGCAGTTGACGCTATC+TGG | + | chr5.4:12826474-12826493 | MS.gene59409:intron | 50.0% | |
| TGTATGGTCCTCCAGGAACT+GGG | + | chr5.4:12824246-12824265 | MS.gene59409:CDS | 50.0% | |
| TTGTATGGTCCTCCAGGAAC+TGG | + | chr5.4:12824245-12824264 | MS.gene59409:CDS | 50.0% | |
| ! | CAGCATGATGGAAGCTGTCA+TGG | - | chr5.4:12823538-12823557 | None:intergenic | 50.0% |
| ! | CATCATGCTGCTTCGTTCCA+TGG | + | chr5.4:12823548-12823567 | MS.gene59409:CDS | 50.0% |
| !! | CTTCCTGGCCTTAAAAGTGC+TGG | - | chr5.4:12826588-12826607 | None:intergenic | 50.0% |
| !! | GGTAGCGGAAGGTGTTGTAA+AGG | - | chr5.4:12823608-12823627 | None:intergenic | 50.0% |
| !!! | GATCCAGCACTTTTAAGGCC+AGG | + | chr5.4:12826582-12826601 | MS.gene59409:CDS | 50.0% |
| AACACCTGCACAAGTTGCCG+AGG | + | chr5.4:12826740-12826759 | MS.gene59409:CDS | 55.0% | |
| AGTGTGAGTGTAGGGGAACG+TGG | - | chr5.4:12823639-12823658 | None:intergenic | 55.0% | |
| CAGAACCCACATGCTAGGCT+AGG | - | chr5.4:12825262-12825281 | None:intergenic | 55.0% | |
| CTAGGCCTAGCCTAGCATGT+GGG | + | chr5.4:12825254-12825273 | MS.gene59409:intron | 55.0% | |
| GATGAAGAACGAAGACGCGG+AGG | + | chr5.4:12826767-12826786 | MS.gene59409:CDS | 55.0% | |
| ! | GTTGGTAGGGCTTGGAAACG+TGG | + | chr5.4:12824215-12824234 | MS.gene59409:CDS | 55.0% |
| !! | AGGTAGCCACGGATTGGTTG+AGG | - | chr5.4:12823588-12823607 | None:intergenic | 55.0% |
| CCTTCTCCATGCCTCCTCTC+AGG | - | chr5.4:12824434-12824453 | None:intergenic | 60.0% | |
| GCTAGGCCTAGCCTAGCATG+TGG | + | chr5.4:12825253-12825272 | MS.gene59409:intron | 60.0% | |
| ! | CCTGAGAGGAGGCATGGAGA+AGG | + | chr5.4:12824431-12824450 | MS.gene59409:CDS | 60.0% |
| GACGCGGAGGCGACGCTCGA+AGG | + | chr5.4:12826780-12826799 | MS.gene59409:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 12823498 | 12826995 | 12823498 | ID=MS.gene59409 |
| chr5.4 | mRNA | 12823498 | 12826995 | 12823498 | ID=MS.gene59409.t1;Parent=MS.gene59409 |
| chr5.4 | exon | 12823498 | 12824478 | 12823498 | ID=MS.gene59409.t1.exon1;Parent=MS.gene59409.t1 |
| chr5.4 | CDS | 12823498 | 12824478 | 12823498 | ID=cds.MS.gene59409.t1;Parent=MS.gene59409.t1 |
| chr5.4 | exon | 12826483 | 12826995 | 12826483 | ID=MS.gene59409.t1.exon2;Parent=MS.gene59409.t1 |
| chr5.4 | CDS | 12826483 | 12826995 | 12826483 | ID=cds.MS.gene59409.t1;Parent=MS.gene59409.t1 |
| Gene Sequence |
| Protein sequence |
