Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64768.t1 | XP_003612174.1 | 97.1 | 522 | 15 | 0 | 31 | 552 | 26 | 547 | 8.10E-290 | 1005.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64768.t1 | O04472 | 63.9 | 529 | 181 | 3 | 31 | 551 | 14 | 540 | 4.9e-203 | 708.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64768.t1 | G7JW84 | 97.1 | 522 | 15 | 0 | 31 | 552 | 26 | 547 | 5.8e-290 | 1005.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene56947 | MS.gene64768 | PPI |
| MS.gene70604 | MS.gene64768 | PPI |
| MS.gene022275 | MS.gene64768 | PPI |
| MS.gene64768 | MS.gene60344 | PPI |
| MS.gene64768 | MS.gene96701 | PPI |
| MS.gene64768 | MS.gene91317 | PPI |
| MS.gene86930 | MS.gene64768 | PPI |
| MS.gene033221 | MS.gene64768 | PPI |
| MS.gene074377 | MS.gene64768 | PPI |
| MS.gene64768 | MS.gene43290 | PPI |
| MS.gene25932 | MS.gene64768 | PPI |
| MS.gene64768 | MS.gene71606 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64768.t1 | MTR_5g022110 | 95.652 | 552 | 19 | 1 | 1 | 552 | 1 | 547 | 0.0 | 1035 |
| MS.gene64768.t1 | MTR_3g103230 | 76.560 | 529 | 124 | 0 | 24 | 552 | 26 | 554 | 0.0 | 861 |
| MS.gene64768.t1 | MTR_8g063220 | 59.176 | 534 | 209 | 3 | 26 | 552 | 2 | 533 | 0.0 | 664 |
| MS.gene64768.t1 | MTR_3g078270 | 58.071 | 539 | 214 | 2 | 17 | 552 | 3 | 532 | 0.0 | 657 |
| MS.gene64768.t1 | MTR_4g106750 | 57.062 | 531 | 224 | 2 | 26 | 552 | 2 | 532 | 0.0 | 639 |
| MS.gene64768.t1 | MTR_5g035180 | 56.564 | 518 | 221 | 2 | 39 | 552 | 21 | 538 | 0.0 | 624 |
| MS.gene64768.t1 | MTR_1g106085 | 55.766 | 529 | 226 | 4 | 26 | 551 | 3 | 526 | 0.0 | 591 |
| MS.gene64768.t1 | MTR_4g106750 | 57.261 | 482 | 203 | 1 | 74 | 552 | 2 | 483 | 0.0 | 577 |
| MS.gene64768.t1 | MTR_2g016460 | 52.863 | 524 | 237 | 4 | 31 | 550 | 5 | 522 | 0.0 | 566 |
| MS.gene64768.t1 | MTR_8g086520 | 52.390 | 523 | 241 | 4 | 31 | 550 | 5 | 522 | 0.0 | 565 |
| MS.gene64768.t1 | MTR_3g080390 | 52.132 | 516 | 239 | 4 | 40 | 550 | 6 | 518 | 0.0 | 548 |
| MS.gene64768.t1 | MTR_8g086520 | 54.566 | 438 | 196 | 1 | 31 | 468 | 5 | 439 | 1.21e-175 | 504 |
| MS.gene64768.t1 | MTR_1g021120 | 51.262 | 515 | 238 | 5 | 44 | 551 | 38 | 546 | 8.28e-175 | 505 |
| MS.gene64768.t1 | MTR_8g086520 | 54.386 | 399 | 179 | 1 | 31 | 429 | 5 | 400 | 3.39e-158 | 457 |
| MS.gene64768.t1 | MTR_4g106750 | 57.297 | 370 | 155 | 1 | 186 | 552 | 11 | 380 | 5.95e-152 | 441 |
| MS.gene64768.t1 | MTR_8g086520 | 52.854 | 403 | 185 | 3 | 151 | 550 | 6 | 406 | 8.41e-149 | 434 |
| MS.gene64768.t1 | MTR_8g068550 | 34.641 | 459 | 277 | 3 | 31 | 468 | 205 | 661 | 3.03e-89 | 291 |
| MS.gene64768.t1 | MTR_5g032020 | 34.423 | 520 | 290 | 5 | 66 | 545 | 185 | 693 | 1.31e-88 | 288 |
| MS.gene64768.t1 | MTR_2g084895 | 32.500 | 560 | 329 | 7 | 33 | 549 | 125 | 678 | 5.16e-88 | 286 |
| MS.gene64768.t1 | MTR_2g103510 | 29.965 | 574 | 338 | 10 | 7 | 549 | 51 | 591 | 2.72e-83 | 271 |
| MS.gene64768.t1 | MTR_4g055290 | 32.143 | 532 | 295 | 9 | 64 | 549 | 169 | 680 | 2.11e-80 | 266 |
| MS.gene64768.t1 | MTR_8g086535 | 56.897 | 116 | 49 | 1 | 315 | 429 | 1 | 116 | 5.91e-34 | 125 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64768.t1 | AT1G65550 | 63.962 | 530 | 179 | 4 | 31 | 551 | 14 | 540 | 0.0 | 737 |
| MS.gene64768.t1 | AT5G62890 | 58.569 | 531 | 216 | 2 | 26 | 552 | 2 | 532 | 0.0 | 648 |
| MS.gene64768.t1 | AT5G62890 | 58.569 | 531 | 216 | 2 | 26 | 552 | 2 | 532 | 0.0 | 648 |
| MS.gene64768.t1 | AT5G62890 | 58.569 | 531 | 216 | 2 | 26 | 552 | 2 | 532 | 0.0 | 648 |
| MS.gene64768.t1 | AT1G60030 | 58.221 | 517 | 213 | 1 | 39 | 552 | 22 | 538 | 0.0 | 644 |
| MS.gene64768.t1 | AT1G10540 | 55.659 | 539 | 231 | 4 | 19 | 551 | 2 | 538 | 0.0 | 614 |
| MS.gene64768.t1 | AT5G49990 | 57.115 | 520 | 220 | 1 | 36 | 552 | 9 | 528 | 0.0 | 598 |
| MS.gene64768.t1 | AT5G49990 | 57.115 | 520 | 220 | 1 | 36 | 552 | 9 | 528 | 0.0 | 598 |
| MS.gene64768.t1 | AT5G49990 | 57.115 | 520 | 220 | 1 | 36 | 552 | 9 | 528 | 0.0 | 598 |
| MS.gene64768.t1 | AT5G49990 | 57.115 | 520 | 220 | 1 | 36 | 552 | 9 | 528 | 0.0 | 598 |
| MS.gene64768.t1 | AT1G49960 | 55.682 | 528 | 225 | 3 | 29 | 551 | 2 | 525 | 0.0 | 588 |
| MS.gene64768.t1 | AT5G62890 | 61.830 | 448 | 170 | 1 | 26 | 472 | 2 | 449 | 0.0 | 580 |
| MS.gene64768.t1 | AT2G34190 | 51.527 | 524 | 246 | 4 | 30 | 550 | 4 | 522 | 0.0 | 557 |
| MS.gene64768.t1 | AT2G05760 | 51.163 | 516 | 244 | 4 | 40 | 550 | 6 | 518 | 0.0 | 543 |
| MS.gene64768.t1 | AT2G26510 | 48.837 | 516 | 254 | 3 | 41 | 550 | 36 | 547 | 5.05e-170 | 493 |
| MS.gene64768.t1 | AT5G25420 | 55.909 | 440 | 124 | 4 | 31 | 470 | 26 | 395 | 5.88e-170 | 488 |
| MS.gene64768.t1 | AT1G10540 | 57.069 | 389 | 162 | 3 | 19 | 404 | 2 | 388 | 4.84e-157 | 454 |
| MS.gene64768.t1 | AT2G26510 | 49.451 | 364 | 184 | 0 | 41 | 404 | 36 | 399 | 5.85e-120 | 360 |
| MS.gene64768.t1 | AT2G26510 | 48.718 | 351 | 180 | 0 | 41 | 391 | 36 | 386 | 8.89e-113 | 342 |
| MS.gene64768.t1 | AT2G27810 | 29.623 | 584 | 373 | 5 | 3 | 549 | 119 | 701 | 6.00e-79 | 262 |
| MS.gene64768.t1 | AT4G38050 | 31.541 | 558 | 312 | 8 | 39 | 549 | 170 | 704 | 2.61e-77 | 258 |
| MS.gene64768.t1 | AT2G27810 | 32.582 | 488 | 306 | 3 | 3 | 468 | 119 | 605 | 3.49e-77 | 258 |
| MS.gene64768.t1 | AT2G27810 | 31.992 | 472 | 298 | 3 | 3 | 452 | 119 | 589 | 3.05e-71 | 239 |
| MS.gene64768.t1 | AT2G27810 | 32.235 | 425 | 265 | 3 | 3 | 405 | 119 | 542 | 3.43e-61 | 211 |
Find 117 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCCTTGAAACAGGAAAATT+TGG | 0.146283 | 5.2:+13230989 | MS.gene64768:intron |
| TGCATTGGTTGCATTAATTT+TGG | 0.216559 | 5.2:+13231489 | MS.gene64768:CDS |
| ATTTCCTGCATTAATTATTA+TGG | 0.218388 | 5.2:+13229654 | MS.gene64768:CDS |
| CTTGCGAAATGTGTTGAAAT+TGG | 0.228642 | 5.2:+13229631 | MS.gene64768:CDS |
| CTAGGCTTCTCATTCTTCTT+AGG | 0.228918 | 5.2:+13231247 | MS.gene64768:CDS |
| TGAGAAGCCTAGCACAAATT+TGG | 0.262002 | 5.2:-13231236 | None:intergenic |
| ACCACCTTCATTGGCAGCTT+TGG | 0.293558 | 5.2:-13228417 | None:intergenic |
| AAGTCCTACTTTCAATGTTT+TGG | 0.295517 | 5.2:+13230194 | MS.gene64768:CDS |
| ACCTATAATTTCTATTGTTC+AGG | 0.295647 | 5.2:+13229152 | MS.gene64768:CDS |
| TCAAGTTTCCAAATGGCTAT+TGG | 0.296920 | 5.2:+13229333 | MS.gene64768:CDS |
| GGCATGTTTGGTTGTGTAAC+TGG | 0.299241 | 5.2:+13230569 | MS.gene64768:CDS |
| AACTATAATTGTTCCTCAAA+TGG | 0.310349 | 5.2:+13228906 | MS.gene64768:CDS |
| TGCAGGTCAAGCAGTGATAT+TGG | 0.311608 | 5.2:+13228837 | MS.gene64768:intron |
| ATAGTTTCATTTACCTCATA+AGG | 0.311803 | 5.2:-13229201 | None:intergenic |
| GCATTATATTGTGTATTATT+CGG | 0.323236 | 5.2:+13231049 | MS.gene64768:CDS |
| GAGAAGTTTACTTTGTATAA+TGG | 0.334254 | 5.2:+13231571 | MS.gene64768:CDS |
| TCCTATGCTGCTGCAAGATA+TGG | 0.340951 | 5.2:+13230364 | MS.gene64768:CDS |
| AAAATGACAGTGGTTTAAAA+TGG | 0.346990 | 5.2:+13231545 | MS.gene64768:CDS |
| GCCTGAACAATAGAAATTAT+AGG | 0.356271 | 5.2:-13229153 | None:intergenic |
| TCTTTCACTGGCTGTGGTGC+TGG | 0.357369 | 5.2:-13228497 | None:intergenic |
| GGAGTAGGTGCTTTGTTTAG+TGG | 0.360576 | 5.2:+13230548 | MS.gene64768:CDS |
| TTAATGCAATATTGAATTCC+AGG | 0.362670 | 5.2:-13228527 | None:intergenic |
| TATGTAGCTTCTGCTGGTCT+TGG | 0.364528 | 5.2:+13231178 | MS.gene64768:intron |
| CTTTGTATAATGGAGATGTT+AGG | 0.371185 | 5.2:+13231581 | MS.gene64768:CDS |
| CGATTGCCAATTGTAGTTGT+TGG | 0.376597 | 5.2:+13229111 | MS.gene64768:CDS |
| TCGGTCATTTATTGACTTAA+CGG | 0.385212 | 5.2:-13229860 | None:intergenic |
| GCCTCCACCACCACCTTCAT+TGG | 0.391683 | 5.2:-13228426 | None:intergenic |
| TGACAAAACATGGCTCAAAA+TGG | 0.404370 | 5.2:+13228380 | None:intergenic |
| TATGAACCAACAACTACAAT+TGG | 0.405084 | 5.2:-13229117 | None:intergenic |
| CAGCATTACCTTCTAACTCT+TGG | 0.411328 | 5.2:+13228865 | MS.gene64768:CDS |
| TATCAGCCGCGGAGCTGGTT+GGG | 0.413972 | 5.2:+13230414 | MS.gene64768:CDS |
| GCTTTGTTTAGTGGCATGTT+TGG | 0.416996 | 5.2:+13230557 | MS.gene64768:CDS |
| ATGAACAAGAAAGTCCTAGA+TGG | 0.420567 | 5.2:+13231314 | MS.gene64768:CDS |
| CAATATAATGCTGCTATGAT+TGG | 0.421128 | 5.2:-13231037 | None:intergenic |
| TCTATTATCAGCCGCGGAGC+TGG | 0.422496 | 5.2:+13230409 | MS.gene64768:CDS |
| ATTTGAGGAACAATTATAGT+TGG | 0.426537 | 5.2:-13228904 | None:intergenic |
| GAAGGTGGTGGTGGAGGCGG+CGG | 0.426596 | 5.2:+13228431 | MS.gene64768:CDS |
| ACATTTCTTCAATCTTTGTT+CGG | 0.429936 | 5.2:+13229084 | MS.gene64768:CDS |
| GCAGGTCAAGCAGTGATATT+GGG | 0.430172 | 5.2:+13228838 | MS.gene64768:intron |
| CAGACACTTCTGTTTGTGTC+TGG | 0.433279 | 5.2:+13229054 | MS.gene64768:CDS |
| CAATGTAGGCTGAGAAGACT+AGG | 0.435755 | 5.2:+13229025 | MS.gene64768:intron |
| TTACTAGCATTAACAAAAGT+AGG | 0.438242 | 5.2:+13230725 | MS.gene64768:CDS |
| AATGAAGGTGGTGGTGGAGG+CGG | 0.442126 | 5.2:+13228428 | MS.gene64768:CDS |
| AGGTGTTATGATCTCTTAAA+GGG | 0.444067 | 5.2:-13231653 | None:intergenic |
| ACATCTCCTCCACCCATTTG+AGG | 0.445664 | 5.2:-13228919 | None:intergenic |
| CCAGGTAATTGCTCTTTCAC+TGG | 0.449256 | 5.2:-13228509 | None:intergenic |
| ACTATAATTGTTCCTCAAAT+GGG | 0.450386 | 5.2:+13228907 | MS.gene64768:CDS |
| TTATCAGCCGCGGAGCTGGT+TGG | 0.454021 | 5.2:+13230413 | MS.gene64768:CDS |
| CTGTAATGCCAAGAGTTAGA+AGG | 0.457456 | 5.2:-13228873 | None:intergenic |
| GCTCCGCGGCTGATAATAGA+AGG | 0.458220 | 5.2:-13230406 | None:intergenic |
| TATTTACTGTCACAATTACA+TGG | 0.459016 | 5.2:+13229893 | MS.gene64768:CDS |
| GCCAATGAAGGTGGTGGTGG+AGG | 0.466316 | 5.2:+13228425 | MS.gene64768:CDS |
| GTTCCATATGTAACTTTCGC+TGG | 0.467362 | 5.2:+13229491 | MS.gene64768:CDS |
| AGAGTAATTCAAATTTCAGC+TGG | 0.468569 | 5.2:+13230755 | MS.gene64768:CDS |
| TGGAACTATGTAGCTTCTGC+TGG | 0.469454 | 5.2:+13231172 | MS.gene64768:intron |
| TATAGCTTAATTACCCATCT+AGG | 0.470859 | 5.2:-13231328 | None:intergenic |
| ACATATAACGGTTGCTGCAT+TGG | 0.478580 | 5.2:+13231474 | MS.gene64768:CDS |
| CATAAGTTCAAGTTTCCAAA+TGG | 0.478916 | 5.2:+13229326 | MS.gene64768:CDS |
| TTATGATCTCTTAAAGGGCT+GGG | 0.481196 | 5.2:-13231648 | None:intergenic |
| GTTATGATCTCTTAAAGGGC+TGG | 0.486418 | 5.2:-13231649 | None:intergenic |
| TATGTAACTTTCGCTGGACT+CGG | 0.490704 | 5.2:+13229497 | MS.gene64768:CDS |
| ATGACAGTGGTTTAAAATGG+TGG | 0.494146 | 5.2:+13231548 | MS.gene64768:CDS |
| CCAGTGAAAGAGCAATTACC+TGG | 0.496122 | 5.2:+13228509 | MS.gene64768:CDS |
| AATTGCTCTTTCACTGGCTG+TGG | 0.501886 | 5.2:-13228503 | None:intergenic |
| TGACTTGTTGTTATATGCTG+TGG | 0.506820 | 5.2:-13229941 | None:intergenic |
| AGTCCAGCGAAAGTTACATA+TGG | 0.513298 | 5.2:-13229494 | None:intergenic |
| CTTACCATGGAGCGGTGGTA+AGG | 0.514053 | 5.2:-13230005 | None:intergenic |
| GGATTCCAGCGCGATCAGTT+CGG | 0.515737 | 5.2:-13229984 | None:intergenic |
| AATGCTGCTATGATTGGTAA+AGG | 0.516664 | 5.2:-13231031 | None:intergenic |
| CTGATAATAGAAGGCGGCAC+CGG | 0.517220 | 5.2:-13230397 | None:intergenic |
| GATCTTCATGTCACATATAA+CGG | 0.519170 | 5.2:+13231462 | MS.gene64768:CDS |
| ATGACAATGAGAGGGATTCA+AGG | 0.519356 | 5.2:+13229294 | MS.gene64768:CDS |
| GTGTACTAACGCCATGGAGG+TGG | 0.522538 | 5.2:-13228554 | None:intergenic |
| CAGTAAATAGCACTGCAAAT+CGG | 0.524244 | 5.2:-13229879 | None:intergenic |
| TAGGACTTCCCCATTGGAAA+GGG | 0.527990 | 5.2:-13230179 | None:intergenic |
| ACATATGGAACTACAGAAAG+TGG | 0.532513 | 5.2:-13229479 | None:intergenic |
| CTTCCCCATTGGAAAGGGTA+AGG | 0.533419 | 5.2:-13230174 | None:intergenic |
| TGAAAGTAGGACTTCCCCAT+TGG | 0.535521 | 5.2:-13230185 | None:intergenic |
| TGAATATACAGATCCTTATG+AGG | 0.535943 | 5.2:+13229188 | MS.gene64768:CDS |
| GCTGCCAATGAAGGTGGTGG+TGG | 0.538131 | 5.2:+13228422 | MS.gene64768:CDS |
| TCTTCCTGCAGTATCTTCAT+CGG | 0.544295 | 5.2:+13229827 | MS.gene64768:intron |
| TGACAGTGGTTTAAAATGGT+GGG | 0.549048 | 5.2:+13231549 | MS.gene64768:CDS |
| GCTTCCAAAACATTGAAAGT+AGG | 0.550456 | 5.2:-13230198 | None:intergenic |
| TTCAGAACCAAATTTGTGCT+AGG | 0.556517 | 5.2:+13231229 | MS.gene64768:CDS |
| ATTTGGTTCTGAAACTGTTG+AGG | 0.556795 | 5.2:-13231219 | None:intergenic |
| TGAACAAGAAAGTCCTAGAT+GGG | 0.558213 | 5.2:+13231315 | MS.gene64768:CDS |
| TCCATATCTTGCAGCAGCAT+AGG | 0.561582 | 5.2:-13230365 | None:intergenic |
| AAAACCATAATAATTAATGC+AGG | 0.562434 | 5.2:-13229658 | None:intergenic |
| GAACTACAGAAAGTGGACTA+AGG | 0.565655 | 5.2:-13229472 | None:intergenic |
| GACACCAAAGCTGCCAATGA+AGG | 0.570835 | 5.2:+13228413 | MS.gene64768:CDS |
| GGACTCGGTCTCTATCAACT+TGG | 0.572049 | 5.2:+13229512 | MS.gene64768:CDS |
| TTGTGAGAAATATTGTGGTA+TGG | 0.582535 | 5.2:-13231275 | None:intergenic |
| GTAGGACTTCCCCATTGGAA+AGG | 0.582640 | 5.2:-13230180 | None:intergenic |
| ATTGTTCCTCAAATGGGTGG+AGG | 0.596097 | 5.2:+13228913 | MS.gene64768:CDS |
| GAATCCTTACCACCGCTCCA+TGG | 0.596795 | 5.2:+13230001 | MS.gene64768:CDS |
| GCATTAACAGTCCACCTCCA+TGG | 0.596854 | 5.2:+13228543 | MS.gene64768:CDS |
| AACATGGCTCAAAATGGAGG+TGG | 0.597871 | 5.2:+13228386 | None:intergenic |
| AGGTTTACTATGACAATGAG+AGG | 0.600380 | 5.2:+13229285 | MS.gene64768:CDS |
| AAAAGCTCATTGAGTCTGCA+AGG | 0.601036 | 5.2:-13231625 | None:intergenic |
| AGTTGCCGAACTGATCGCGC+TGG | 0.601369 | 5.2:+13229979 | MS.gene64768:CDS |
| GGTTTACTATGACAATGAGA+GGG | 0.606294 | 5.2:+13229286 | MS.gene64768:CDS |
| AAATATTGTGAGAAATATTG+TGG | 0.606956 | 5.2:-13231280 | None:intergenic |
| ATAATTGTTCCTCAAATGGG+TGG | 0.610258 | 5.2:+13228910 | MS.gene64768:CDS |
| CAGCCGCGGAGCTGGTTGGG+TGG | 0.617485 | 5.2:+13230417 | MS.gene64768:CDS |
| CCGCCTTCTATTATCAGCCG+CGG | 0.618383 | 5.2:+13230403 | MS.gene64768:CDS |
| CAAAACATGGCTCAAAATGG+AGG | 0.619091 | 5.2:+13228383 | None:intergenic |
| AATAGAAGGCGGCACCGGCG+TGG | 0.625499 | 5.2:-13230392 | None:intergenic |
| AATGTAGGCTGAGAAGACTA+GGG | 0.641878 | 5.2:+13229026 | MS.gene64768:intron |
| AACTTAATCTTACCATGGAG+CGG | 0.649594 | 5.2:-13230013 | None:intergenic |
| TTAATCTTACCATGGAGCGG+TGG | 0.654527 | 5.2:-13230010 | None:intergenic |
| AAGATATGGAAGTGCCACGC+CGG | 0.655847 | 5.2:+13230378 | MS.gene64768:CDS |
| TTTCCTTACCCTTTCCAATG+GGG | 0.665262 | 5.2:+13230171 | MS.gene64768:CDS |
| AAAGCTGCCAATGAAGGTGG+TGG | 0.665648 | 5.2:+13228419 | MS.gene64768:CDS |
| CCGCGGCTGATAATAGAAGG+CGG | 0.690209 | 5.2:-13230403 | None:intergenic |
| ACCAAAGCTGCCAATGAAGG+TGG | 0.697056 | 5.2:+13228416 | MS.gene64768:CDS |
| ATACCACCCAACCAGCTCCG+CGG | 0.707287 | 5.2:-13230420 | None:intergenic |
| TAGGTGTACTAACGCCATGG+AGG | 0.753213 | 5.2:-13228557 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTGTAAAACAAAATAAT+GGG | + | chr5.2:13229748-13229767 | MS.gene64768:intron | 10.0% |
| !! | TAAATTGTAAAACAAAATAA+TGG | + | chr5.2:13229747-13229766 | MS.gene64768:intron | 10.0% |
| !! | GAAATTAGTACAAATAATAT+TGG | - | chr5.2:13230819-13230838 | None:intergenic | 15.0% |
| !!! | CTTAACAATATTTGTTAATT+TGG | + | chr5.2:13231152-13231171 | MS.gene64768:intron | 15.0% |
| !! | AAAACCATAATAATTAATGC+AGG | - | chr5.2:13229661-13229680 | None:intergenic | 20.0% |
| !! | AAAATGATTTGATTCAATGT+AGG | + | chr5.2:13229011-13229030 | MS.gene64768:intron | 20.0% |
| !! | AAATATTGTGAGAAATATTG+TGG | - | chr5.2:13231283-13231302 | None:intergenic | 20.0% |
| !! | ATTTCCTGCATTAATTATTA+TGG | + | chr5.2:13229654-13229673 | MS.gene64768:CDS | 20.0% |
| !! | GCATTATATTGTGTATTATT+CGG | + | chr5.2:13231049-13231068 | MS.gene64768:CDS | 20.0% |
| !! | TAGTAACTATAAGTTAAGAT+AGG | - | chr5.2:13228579-13228598 | None:intergenic | 20.0% |
| !! | TGAGTAATATAATGACTAAA+AGG | - | chr5.2:13230306-13230325 | None:intergenic | 20.0% |
| !! | TTAAGAAACAAGAAATCAAA+AGG | - | chr5.2:13229577-13229596 | None:intergenic | 20.0% |
| !!! | AACTCTAATTAATTTTGCTA+AGG | - | chr5.2:13230278-13230297 | None:intergenic | 20.0% |
| !!! | TAATTTTGCTAAGGATTTAA+GGG | - | chr5.2:13230269-13230288 | None:intergenic | 20.0% |
| !!! | TCATTCTTGTTTTGATTTTA+GGG | + | chr5.2:13230527-13230546 | MS.gene64768:intron | 20.0% |
| !!! | TTAATTTTGCTAAGGATTTA+AGG | - | chr5.2:13230270-13230289 | None:intergenic | 20.0% |
| !!! | TTTTAGTCATTATATTACTC+AGG | + | chr5.2:13230305-13230324 | MS.gene64768:intron | 20.0% |
| ! | AAAAAAAGAGTAAAGCAGAA+AGG | - | chr5.2:13230688-13230707 | None:intergenic | 25.0% |
| ! | AAAATGACAGTGGTTTAAAA+TGG | + | chr5.2:13231545-13231564 | MS.gene64768:CDS | 25.0% |
| ! | AACTATAATTGTTCCTCAAA+TGG | + | chr5.2:13228906-13228925 | MS.gene64768:CDS | 25.0% |
| ! | ACATTTCTTCAATCTTTGTT+CGG | + | chr5.2:13229084-13229103 | MS.gene64768:CDS | 25.0% |
| ! | ACCTATAATTTCTATTGTTC+AGG | + | chr5.2:13229152-13229171 | MS.gene64768:CDS | 25.0% |
| ! | ACTATAATTGTTCCTCAAAT+GGG | + | chr5.2:13228907-13228926 | MS.gene64768:CDS | 25.0% |
| ! | ATAGTTTCATTTACCTCATA+AGG | - | chr5.2:13229204-13229223 | None:intergenic | 25.0% |
| ! | ATTTCATAATTTCAGCATCT+TGG | + | chr5.2:13230834-13230853 | MS.gene64768:intron | 25.0% |
| ! | ATTTGAGGAACAATTATAGT+TGG | - | chr5.2:13228907-13228926 | None:intergenic | 25.0% |
| ! | CATACTAGTTAAACAGATTT+GGG | - | chr5.2:13229776-13229795 | None:intergenic | 25.0% |
| ! | GAGAAGTTTACTTTGTATAA+TGG | + | chr5.2:13231571-13231590 | MS.gene64768:CDS | 25.0% |
| ! | TATGAAACTTAATCTTACCA+TGG | - | chr5.2:13230021-13230040 | None:intergenic | 25.0% |
| ! | TATTTACTGTCACAATTACA+TGG | + | chr5.2:13229893-13229912 | MS.gene64768:CDS | 25.0% |
| ! | TTAATGCAATATTGAATTCC+AGG | - | chr5.2:13228530-13228549 | None:intergenic | 25.0% |
| ! | TTACAAGTTCCAACAAATTA+AGG | - | chr5.2:13228616-13228635 | None:intergenic | 25.0% |
| ! | TTACTAGCATTAACAAAAGT+AGG | + | chr5.2:13230725-13230744 | MS.gene64768:CDS | 25.0% |
| !! | ATGATTTTCTTCTCTGTATT+TGG | + | chr5.2:13230782-13230801 | MS.gene64768:CDS | 25.0% |
| !! | ATTTTTGCTTAAGATAGTAC+TGG | + | chr5.2:13228784-13228803 | MS.gene64768:intron | 25.0% |
| !!! | CTATTGGATTTTTTGGTTTT+TGG | + | chr5.2:13229349-13229368 | MS.gene64768:CDS | 25.0% |
| !!! | GTCATTCTTGTTTTGATTTT+AGG | + | chr5.2:13230526-13230545 | MS.gene64768:intron | 25.0% |
| !!! | TGCTTTACTCTTTTTTTTCA+GGG | + | chr5.2:13230691-13230710 | MS.gene64768:intron | 25.0% |
| !!! | TTCACTTTTCCTTAATTTGT+TGG | + | chr5.2:13228604-13228623 | MS.gene64768:intron | 25.0% |
| !!! | TTCTTTAGTTTCTCTTTTTG+AGG | + | chr5.2:13230239-13230258 | MS.gene64768:CDS | 25.0% |
| AAAAACACACACAAGGAATT+AGG | - | chr5.2:13230620-13230639 | None:intergenic | 30.0% | |
| AAAACACACACAAGGAATTA+GGG | - | chr5.2:13230619-13230638 | None:intergenic | 30.0% | |
| AGAGTAATTCAAATTTCAGC+TGG | + | chr5.2:13230755-13230774 | MS.gene64768:CDS | 30.0% | |
| AGTAACTAGTATGTTGCAAA+AGG | + | chr5.2:13229714-13229733 | MS.gene64768:intron | 30.0% | |
| CAAAAAATCCAATAGCCATT+TGG | - | chr5.2:13229344-13229363 | None:intergenic | 30.0% | |
| CAATATAATGCTGCTATGAT+TGG | - | chr5.2:13231040-13231059 | None:intergenic | 30.0% | |
| CCAAATCTGTTTAACTAGTA+TGG | + | chr5.2:13229774-13229793 | MS.gene64768:intron | 30.0% | |
| CCATACTAGTTAAACAGATT+TGG | - | chr5.2:13229777-13229796 | None:intergenic | 30.0% | |
| GACTTATAGCCAATAAAACA+CGG | + | chr5.2:13230891-13230910 | MS.gene64768:intron | 30.0% | |
| GATCTTCATGTCACATATAA+CGG | + | chr5.2:13231462-13231481 | MS.gene64768:CDS | 30.0% | |
| GCCTGAACAATAGAAATTAT+AGG | - | chr5.2:13229156-13229175 | None:intergenic | 30.0% | |
| TATAGCTTAATTACCCATCT+AGG | - | chr5.2:13231331-13231350 | None:intergenic | 30.0% | |
| TATGAACCAACAACTACAAT+TGG | - | chr5.2:13229120-13229139 | None:intergenic | 30.0% | |
| TCAATCTTTGATCATAATGC+AGG | + | chr5.2:13228820-13228839 | MS.gene64768:intron | 30.0% | |
| TGAATATACAGATCCTTATG+AGG | + | chr5.2:13229188-13229207 | MS.gene64768:CDS | 30.0% | |
| TGTTTGTTTGAATTTCCTAG+AGG | + | chr5.2:13229265-13229284 | MS.gene64768:intron | 30.0% | |
| TTCAAGAAAAAACACACACA+AGG | - | chr5.2:13230627-13230646 | None:intergenic | 30.0% | |
| TTGTGAGAAATATTGTGGTA+TGG | - | chr5.2:13231278-13231297 | None:intergenic | 30.0% | |
| ! | AAAGTGTTTCCATTTATGCA+GGG | + | chr5.2:13230143-13230162 | MS.gene64768:intron | 30.0% |
| ! | AAGTCCTACTTTCAATGTTT+TGG | + | chr5.2:13230194-13230213 | MS.gene64768:CDS | 30.0% |
| ! | ATGACTTGTGATCTGTTAAA+GGG | + | chr5.2:13230650-13230669 | MS.gene64768:intron | 30.0% |
| ! | ATTGGTAGTTTACTAGTTTG+TGG | + | chr5.2:13230858-13230877 | MS.gene64768:intron | 30.0% |
| ! | CATAAGTTCAAGTTTCCAAA+TGG | + | chr5.2:13229326-13229345 | MS.gene64768:CDS | 30.0% |
| ! | CTTTGTATAATGGAGATGTT+AGG | + | chr5.2:13231581-13231600 | MS.gene64768:CDS | 30.0% |
| ! | TATTATGGTTTTCATCTCAC+AGG | + | chr5.2:13229669-13229688 | MS.gene64768:CDS | 30.0% |
| ! | TCCAAATTTTCCTGTTTCAA+GGG | - | chr5.2:13230993-13231012 | None:intergenic | 30.0% |
| ! | TGATAATCTTTGTGCTGTTA+TGG | + | chr5.2:13231106-13231125 | MS.gene64768:intron | 30.0% |
| !! | AAAAGTGTTTCCATTTATGC+AGG | + | chr5.2:13230142-13230161 | MS.gene64768:intron | 30.0% |
| !! | TCGGTCATTTATTGACTTAA+CGG | - | chr5.2:13229863-13229882 | None:intergenic | 30.0% |
| !! | TTGTTATTTACCCTTGAAAC+AGG | + | chr5.2:13230980-13230999 | MS.gene64768:intron | 30.0% |
| !!! | CAAATGGCTATTGGATTTTT+TGG | + | chr5.2:13229342-13229361 | MS.gene64768:CDS | 30.0% |
| !!! | CTGCTTTACTCTTTTTTTTC+AGG | + | chr5.2:13230690-13230709 | MS.gene64768:intron | 30.0% |
| !!! | TGCATTGGTTGCATTAATTT+TGG | + | chr5.2:13231489-13231508 | MS.gene64768:CDS | 30.0% |
| !!! | TTGTTTTGATTTTAGGGAGT+AGG | + | chr5.2:13230533-13230552 | MS.gene64768:intron | 30.0% |
| !!! | TTTTTTTTCAGGGAAAATGC+TGG | + | chr5.2:13230701-13230720 | MS.gene64768:intron | 30.0% |
| AAAACCATCAAACATGCACT+AGG | - | chr5.2:13229800-13229819 | None:intergenic | 35.0% | |
| AACTTAATCTTACCATGGAG+CGG | - | chr5.2:13230016-13230035 | None:intergenic | 35.0% | |
| AATCCTCAATTCATCACCAT+TGG | - | chr5.2:13229542-13229561 | None:intergenic | 35.0% | |
| AATGCTGCTATGATTGGTAA+AGG | - | chr5.2:13231034-13231053 | None:intergenic | 35.0% | |
| ACATATGGAACTACAGAAAG+TGG | - | chr5.2:13229482-13229501 | None:intergenic | 35.0% | |
| ACCCTTGAAACAGGAAAATT+TGG | + | chr5.2:13230989-13231008 | MS.gene64768:intron | 35.0% | |
| AGGTTTACTATGACAATGAG+AGG | + | chr5.2:13229285-13229304 | MS.gene64768:CDS | 35.0% | |
| ATAATTGTTCCTCAAATGGG+TGG | + | chr5.2:13228910-13228929 | MS.gene64768:CDS | 35.0% | |
| ATGAACAAGAAAGTCCTAGA+TGG | + | chr5.2:13231314-13231333 | MS.gene64768:CDS | 35.0% | |
| ATGTTTACTGCTTCATTCAC+AGG | + | chr5.2:13229447-13229466 | MS.gene64768:intron | 35.0% | |
| CAGTAAATAGCACTGCAAAT+CGG | - | chr5.2:13229882-13229901 | None:intergenic | 35.0% | |
| CATTGTCATAGTAAACCTCT+AGG | - | chr5.2:13229283-13229302 | None:intergenic | 35.0% | |
| CTTGCGAAATGTGTTGAAAT+TGG | + | chr5.2:13229631-13229650 | MS.gene64768:CDS | 35.0% | |
| GAAAATACACCCTGCATAAA+TGG | - | chr5.2:13230155-13230174 | None:intergenic | 35.0% | |
| GCTTCCAAAACATTGAAAGT+AGG | - | chr5.2:13230201-13230220 | None:intergenic | 35.0% | |
| GGTTTACTATGACAATGAGA+GGG | + | chr5.2:13229286-13229305 | MS.gene64768:CDS | 35.0% | |
| TAATTTCAGCATCTTGGCAT+TGG | + | chr5.2:13230840-13230859 | MS.gene64768:intron | 35.0% | |
| TCAAGTTTCCAAATGGCTAT+TGG | + | chr5.2:13229333-13229352 | MS.gene64768:CDS | 35.0% | |
| TGAACAAGAAAGTCCTAGAT+GGG | + | chr5.2:13231315-13231334 | MS.gene64768:CDS | 35.0% | |
| TTCAGAACCAAATTTGTGCT+AGG | + | chr5.2:13231229-13231248 | MS.gene64768:CDS | 35.0% | |
| ! | ACTAGTTTGTGGTTGTCTAT+AGG | + | chr5.2:13230869-13230888 | MS.gene64768:intron | 35.0% |
| ! | ATGACAGTGGTTTAAAATGG+TGG | + | chr5.2:13231548-13231567 | MS.gene64768:CDS | 35.0% |
| ! | ATTTTCCTTACCCTTTCCAA+TGG | + | chr5.2:13230169-13230188 | MS.gene64768:CDS | 35.0% |
| ! | CATGACTTGTGATCTGTTAA+AGG | + | chr5.2:13230649-13230668 | MS.gene64768:intron | 35.0% |
| ! | CTCCAAATTTTCCTGTTTCA+AGG | - | chr5.2:13230994-13231013 | None:intergenic | 35.0% |
| ! | TGACAGTGGTTTAAAATGGT+GGG | + | chr5.2:13231549-13231568 | MS.gene64768:CDS | 35.0% |
| ! | TGTTTGTGTCCGTGTTTTAT+TGG | - | chr5.2:13230903-13230922 | None:intergenic | 35.0% |
| ! | TTTCCAATGGTGATGAATTG+AGG | + | chr5.2:13229536-13229555 | MS.gene64768:intron | 35.0% |
| ! | TTTTCCTTACCCTTTCCAAT+GGG | + | chr5.2:13230170-13230189 | MS.gene64768:CDS | 35.0% |
| !! | ATTTGGTTCTGAAACTGTTG+AGG | - | chr5.2:13231222-13231241 | None:intergenic | 35.0% |
| !! | CTATCAACTTGGTTTTCCAA+TGG | + | chr5.2:13229523-13229542 | MS.gene64768:CDS | 35.0% |
| !! | TGACTTGTTGTTATATGCTG+TGG | - | chr5.2:13229944-13229963 | None:intergenic | 35.0% |
| !! | TTGTTTTACTTGCAGTACAC+TGG | + | chr5.2:13230337-13230356 | MS.gene64768:intron | 35.0% |
| !! | TTTGGAAGCTTTTGCTATGA+TGG | + | chr5.2:13230212-13230231 | MS.gene64768:CDS | 35.0% |
| AAAAGCTCATTGAGTCTGCA+AGG | - | chr5.2:13231628-13231647 | None:intergenic | 40.0% | |
| AATGTAGGCTGAGAAGACTA+GGG | + | chr5.2:13229026-13229045 | MS.gene64768:intron | 40.0% | |
| ACATATAACGGTTGCTGCAT+TGG | + | chr5.2:13231474-13231493 | MS.gene64768:CDS | 40.0% | |
| AGTCCAGCGAAAGTTACATA+TGG | - | chr5.2:13229497-13229516 | None:intergenic | 40.0% | |
| ATGACAATGAGAGGGATTCA+AGG | + | chr5.2:13229294-13229313 | MS.gene64768:CDS | 40.0% | |
| CAGCATTACCTTCTAACTCT+TGG | + | chr5.2:13228865-13228884 | MS.gene64768:CDS | 40.0% | |
| CGATTGCCAATTGTAGTTGT+TGG | + | chr5.2:13229111-13229130 | MS.gene64768:CDS | 40.0% | |
| CTAGGCTTCTCATTCTTCTT+AGG | + | chr5.2:13231247-13231266 | MS.gene64768:CDS | 40.0% | |
| CTGTAATGCCAAGAGTTAGA+AGG | - | chr5.2:13228876-13228895 | None:intergenic | 40.0% | |
| GACATAGCGTTAGTTATTCC+TGG | - | chr5.2:13230949-13230968 | None:intergenic | 40.0% | |
| GATGCAGCTAAAAATGACAG+TGG | + | chr5.2:13231535-13231554 | MS.gene64768:CDS | 40.0% | |
| GTTCCATATGTAACTTTCGC+TGG | + | chr5.2:13229491-13229510 | MS.gene64768:CDS | 40.0% | |
| TATACCGATGAAGATACTGC+AGG | - | chr5.2:13229834-13229853 | None:intergenic | 40.0% | |
| TATGTAACTTTCGCTGGACT+CGG | + | chr5.2:13229497-13229516 | MS.gene64768:CDS | 40.0% | |
| TCTTCCTGCAGTATCTTCAT+CGG | + | chr5.2:13229827-13229846 | MS.gene64768:intron | 40.0% | |
| TGAGAAGCCTAGCACAAATT+TGG | - | chr5.2:13231239-13231258 | None:intergenic | 40.0% | |
| TTTCCTTACCCTTTCCAATG+GGG | + | chr5.2:13230171-13230190 | MS.gene64768:CDS | 40.0% | |
| !! | GAACTACAGAAAGTGGACTA+AGG | - | chr5.2:13229475-13229494 | None:intergenic | 40.0% |
| !! | GCTTTGTTTAGTGGCATGTT+TGG | + | chr5.2:13230557-13230576 | MS.gene64768:CDS | 40.0% |
| !! | GTTTTTGGAGAAATGCTGTC+AGG | + | chr5.2:13229364-13229383 | MS.gene64768:CDS | 40.0% |
| AGATAGGTGTACTAACGCCA+TGG | - | chr5.2:13228563-13228582 | None:intergenic | 45.0% | |
| ATGGCCTAGTGCATGTTTGA+TGG | + | chr5.2:13229793-13229812 | MS.gene64768:intron | 45.0% | |
| ATTGTTCCTCAAATGGGTGG+AGG | + | chr5.2:13228913-13228932 | MS.gene64768:CDS | 45.0% | |
| CAATGTAGGCTGAGAAGACT+AGG | + | chr5.2:13229025-13229044 | MS.gene64768:intron | 45.0% | |
| CAGACACTTCTGTTTGTGTC+TGG | + | chr5.2:13229054-13229073 | MS.gene64768:CDS | 45.0% | |
| CCAGGTAATTGCTCTTTCAC+TGG | - | chr5.2:13228512-13228531 | None:intergenic | 45.0% | |
| CCAGTGAAAGAGCAATTACC+TGG | + | chr5.2:13228509-13228528 | MS.gene64768:CDS | 45.0% | |
| GCAGGTCAAGCAGTGATATT+GGG | + | chr5.2:13228838-13228857 | MS.gene64768:intron | 45.0% | |
| GCGTTAGTTATTCCTGGTGT+CGG | - | chr5.2:13230943-13230962 | None:intergenic | 45.0% | |
| GGCATGTTTGGTTGTGTAAC+TGG | + | chr5.2:13230569-13230588 | MS.gene64768:CDS | 45.0% | |
| TAGGACTTCCCCATTGGAAA+GGG | - | chr5.2:13230182-13230201 | None:intergenic | 45.0% | |
| TCCATATCTTGCAGCAGCAT+AGG | - | chr5.2:13230368-13230387 | None:intergenic | 45.0% | |
| TCCTATGCTGCTGCAAGATA+TGG | + | chr5.2:13230364-13230383 | MS.gene64768:CDS | 45.0% | |
| TGAAAGTAGGACTTCCCCAT+TGG | - | chr5.2:13230188-13230207 | None:intergenic | 45.0% | |
| TGCAGGTCAAGCAGTGATAT+TGG | + | chr5.2:13228837-13228856 | MS.gene64768:intron | 45.0% | |
| TGGAACTATGTAGCTTCTGC+TGG | + | chr5.2:13231172-13231191 | MS.gene64768:intron | 45.0% | |
| TTAATCTTACCATGGAGCGG+TGG | - | chr5.2:13230013-13230032 | None:intergenic | 45.0% | |
| ! | AATTGCTCTTTCACTGGCTG+TGG | - | chr5.2:13228506-13228525 | None:intergenic | 45.0% |
| ! | TATGTAGCTTCTGCTGGTCT+TGG | + | chr5.2:13231178-13231197 | MS.gene64768:intron | 45.0% |
| !! | GGAGTAGGTGCTTTGTTTAG+TGG | + | chr5.2:13230548-13230567 | MS.gene64768:CDS | 45.0% |
| AAAGCTGCCAATGAAGGTGG+TGG | + | chr5.2:13228419-13228438 | MS.gene64768:CDS | 50.0% | |
| ACATCTCCTCCACCCATTTG+AGG | - | chr5.2:13228922-13228941 | None:intergenic | 50.0% | |
| ACCAAAGCTGCCAATGAAGG+TGG | + | chr5.2:13228416-13228435 | MS.gene64768:CDS | 50.0% | |
| ACCACCTTCATTGGCAGCTT+TGG | - | chr5.2:13228420-13228439 | None:intergenic | 50.0% | |
| CTGATAATAGAAGGCGGCAC+CGG | - | chr5.2:13230400-13230419 | None:intergenic | 50.0% | |
| CTTCCCCATTGGAAAGGGTA+AGG | - | chr5.2:13230177-13230196 | None:intergenic | 50.0% | |
| GACACCAAAGCTGCCAATGA+AGG | + | chr5.2:13228413-13228432 | MS.gene64768:CDS | 50.0% | |
| GCATTAACAGTCCACCTCCA+TGG | + | chr5.2:13228543-13228562 | MS.gene64768:CDS | 50.0% | |
| GGTGCTAAAAATGCAGGTGG+TGG | + | chr5.2:13228452-13228471 | MS.gene64768:CDS | 50.0% | |
| GTAGGACTTCCCCATTGGAA+AGG | - | chr5.2:13230183-13230202 | None:intergenic | 50.0% | |
| TAGGTGTACTAACGCCATGG+AGG | - | chr5.2:13228560-13228579 | None:intergenic | 50.0% | |
| ! | GGACTCGGTCTCTATCAACT+TGG | + | chr5.2:13229512-13229531 | MS.gene64768:CDS | 50.0% |
| !! | AAGATATGGAAGTGCCACGC+CGG | + | chr5.2:13230378-13230397 | MS.gene64768:CDS | 50.0% |
| ACAGGATACACACCGACACC+AGG | + | chr5.2:13230928-13230947 | MS.gene64768:intron | 55.0% | |
| ACGGACACAAACACGCACAC+AGG | + | chr5.2:13230910-13230929 | MS.gene64768:intron | 55.0% | |
| CCGCCTTCTATTATCAGCCG+CGG | + | chr5.2:13230403-13230422 | MS.gene64768:CDS | 55.0% | |
| CCGCGGCTGATAATAGAAGG+CGG | - | chr5.2:13230406-13230425 | None:intergenic | 55.0% | |
| CTTACCATGGAGCGGTGGTA+AGG | - | chr5.2:13230008-13230027 | None:intergenic | 55.0% | |
| GAATCCTTACCACCGCTCCA+TGG | + | chr5.2:13230001-13230020 | MS.gene64768:CDS | 55.0% | |
| GCTCCGCGGCTGATAATAGA+AGG | - | chr5.2:13230409-13230428 | None:intergenic | 55.0% | |
| GGATTCCAGCGCGATCAGTT+CGG | - | chr5.2:13229987-13230006 | None:intergenic | 55.0% | |
| GTGTACTAACGCCATGGAGG+TGG | - | chr5.2:13228557-13228576 | None:intergenic | 55.0% | |
| TCTATTATCAGCCGCGGAGC+TGG | + | chr5.2:13230409-13230428 | MS.gene64768:CDS | 55.0% | |
| ! | GGCGGTGCTAAAAATGCAGG+TGG | + | chr5.2:13228449-13228468 | MS.gene64768:CDS | 55.0% |
| ! | TCTTTCACTGGCTGTGGTGC+TGG | - | chr5.2:13228500-13228519 | None:intergenic | 55.0% |
| !! | AATGAAGGTGGTGGTGGAGG+CGG | + | chr5.2:13228428-13228447 | MS.gene64768:CDS | 55.0% |
| AGTTGCCGAACTGATCGCGC+TGG | + | chr5.2:13229979-13229998 | MS.gene64768:CDS | 60.0% | |
| ATACCACCCAACCAGCTCCG+CGG | - | chr5.2:13230423-13230442 | None:intergenic | 60.0% | |
| GCCTCCACCACCACCTTCAT+TGG | - | chr5.2:13228429-13228448 | None:intergenic | 60.0% | |
| TATCAGCCGCGGAGCTGGTT+GGG | + | chr5.2:13230414-13230433 | MS.gene64768:CDS | 60.0% | |
| TTATCAGCCGCGGAGCTGGT+TGG | + | chr5.2:13230413-13230432 | MS.gene64768:CDS | 60.0% | |
| ! | GCTGCCAATGAAGGTGGTGG+TGG | + | chr5.2:13228422-13228441 | MS.gene64768:CDS | 60.0% |
| ! | GGCGGCGGTGCTAAAAATGC+AGG | + | chr5.2:13228446-13228465 | MS.gene64768:CDS | 60.0% |
| !! | GCCAATGAAGGTGGTGGTGG+AGG | + | chr5.2:13228425-13228444 | MS.gene64768:CDS | 60.0% |
| !! | AATAGAAGGCGGCACCGGCG+TGG | - | chr5.2:13230395-13230414 | None:intergenic | 65.0% |
| !! | GAAGGTGGTGGTGGAGGCGG+CGG | + | chr5.2:13228431-13228450 | MS.gene64768:CDS | 70.0% |
| CAGCCGCGGAGCTGGTTGGG+TGG | + | chr5.2:13230417-13230436 | MS.gene64768:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 13228389 | 13231660 | 13228389 | ID=MS.gene64768 |
| chr5.2 | mRNA | 13228389 | 13231660 | 13228389 | ID=MS.gene64768.t1;Parent=MS.gene64768 |
| chr5.2 | exon | 13228389 | 13228566 | 13228389 | ID=MS.gene64768.t1.exon1;Parent=MS.gene64768.t1 |
| chr5.2 | CDS | 13228389 | 13228566 | 13228389 | ID=cds.MS.gene64768.t1;Parent=MS.gene64768.t1 |
| chr5.2 | exon | 13228842 | 13228939 | 13228842 | ID=MS.gene64768.t1.exon2;Parent=MS.gene64768.t1 |
| chr5.2 | CDS | 13228842 | 13228939 | 13228842 | ID=cds.MS.gene64768.t1;Parent=MS.gene64768.t1 |
| chr5.2 | exon | 13229033 | 13229209 | 13229033 | ID=MS.gene64768.t1.exon3;Parent=MS.gene64768.t1 |
| chr5.2 | CDS | 13229033 | 13229209 | 13229033 | ID=cds.MS.gene64768.t1;Parent=MS.gene64768.t1 |
| chr5.2 | exon | 13229285 | 13229385 | 13229285 | ID=MS.gene64768.t1.exon4;Parent=MS.gene64768.t1 |
| chr5.2 | CDS | 13229285 | 13229385 | 13229285 | ID=cds.MS.gene64768.t1;Parent=MS.gene64768.t1 |
| chr5.2 | exon | 13229469 | 13229544 | 13229469 | ID=MS.gene64768.t1.exon5;Parent=MS.gene64768.t1 |
| chr5.2 | CDS | 13229469 | 13229544 | 13229469 | ID=cds.MS.gene64768.t1;Parent=MS.gene64768.t1 |
| chr5.2 | exon | 13229631 | 13229690 | 13229631 | ID=MS.gene64768.t1.exon6;Parent=MS.gene64768.t1 |
| chr5.2 | CDS | 13229631 | 13229690 | 13229631 | ID=cds.MS.gene64768.t1;Parent=MS.gene64768.t1 |
| chr5.2 | exon | 13229838 | 13230022 | 13229838 | ID=MS.gene64768.t1.exon7;Parent=MS.gene64768.t1 |
| chr5.2 | CDS | 13229838 | 13230022 | 13229838 | ID=cds.MS.gene64768.t1;Parent=MS.gene64768.t1 |
| chr5.2 | exon | 13230164 | 13230260 | 13230164 | ID=MS.gene64768.t1.exon8;Parent=MS.gene64768.t1 |
| chr5.2 | CDS | 13230164 | 13230260 | 13230164 | ID=cds.MS.gene64768.t1;Parent=MS.gene64768.t1 |
| chr5.2 | exon | 13230352 | 13230438 | 13230352 | ID=MS.gene64768.t1.exon9;Parent=MS.gene64768.t1 |
| chr5.2 | CDS | 13230352 | 13230438 | 13230352 | ID=cds.MS.gene64768.t1;Parent=MS.gene64768.t1 |
| chr5.2 | exon | 13230548 | 13230606 | 13230548 | ID=MS.gene64768.t1.exon10;Parent=MS.gene64768.t1 |
| chr5.2 | CDS | 13230548 | 13230606 | 13230548 | ID=cds.MS.gene64768.t1;Parent=MS.gene64768.t1 |
| chr5.2 | exon | 13230712 | 13230803 | 13230712 | ID=MS.gene64768.t1.exon11;Parent=MS.gene64768.t1 |
| chr5.2 | CDS | 13230712 | 13230803 | 13230712 | ID=cds.MS.gene64768.t1;Parent=MS.gene64768.t1 |
| chr5.2 | exon | 13231002 | 13231079 | 13231002 | ID=MS.gene64768.t1.exon12;Parent=MS.gene64768.t1 |
| chr5.2 | CDS | 13231002 | 13231079 | 13231002 | ID=cds.MS.gene64768.t1;Parent=MS.gene64768.t1 |
| chr5.2 | exon | 13231185 | 13231336 | 13231185 | ID=MS.gene64768.t1.exon13;Parent=MS.gene64768.t1 |
| chr5.2 | CDS | 13231185 | 13231336 | 13231185 | ID=cds.MS.gene64768.t1;Parent=MS.gene64768.t1 |
| chr5.2 | exon | 13231442 | 13231660 | 13231442 | ID=MS.gene64768.t1.exon14;Parent=MS.gene64768.t1 |
| chr5.2 | CDS | 13231442 | 13231660 | 13231442 | ID=cds.MS.gene64768.t1;Parent=MS.gene64768.t1 |
| Gene Sequence |
| Protein sequence |
