Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65433.t1 | XP_024638330.1 | 91.3 | 312 | 24 | 2 | 1 | 311 | 1 | 310 | 1.10E-142 | 516.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65433.t1 | Q94AN4 | 64.9 | 291 | 85 | 4 | 29 | 311 | 46 | 327 | 2.0e-95 | 350.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65433.t1 | A0A396HYJ4 | 91.3 | 312 | 24 | 2 | 1 | 311 | 1 | 310 | 8.2e-143 | 516.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene65433.t1 | TF | AP2/ERF-AP2 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049807 | MS.gene65433 | 0.812729 | 3.66E-51 | -1.69E-46 |
MS.gene050838 | MS.gene65433 | 0.801829 | 7.48E-49 | -1.69E-46 |
MS.gene051885 | MS.gene65433 | 0.822813 | 1.94E-53 | -1.69E-46 |
MS.gene052335 | MS.gene65433 | 0.803118 | 4.06E-49 | -1.69E-46 |
MS.gene052732 | MS.gene65433 | 0.824876 | 6.36E-54 | -1.69E-46 |
MS.gene053143 | MS.gene65433 | 0.870023 | 2.00E-66 | -1.69E-46 |
MS.gene053144 | MS.gene65433 | 0.838415 | 2.92E-57 | -1.69E-46 |
MS.gene053171 | MS.gene65433 | 0.941606 | 3.11E-101 | -1.69E-46 |
MS.gene053581 | MS.gene65433 | 0.834591 | 2.74E-56 | -1.69E-46 |
MS.gene054554 | MS.gene65433 | 0.961564 | 7.54E-120 | -1.69E-46 |
MS.gene054584 | MS.gene65433 | 0.840192 | 1.01E-57 | -1.69E-46 |
MS.gene054585 | MS.gene65433 | 0.829381 | 5.31E-55 | -1.69E-46 |
MS.gene055331 | MS.gene65433 | 0.809551 | 1.79E-50 | -1.69E-46 |
MS.gene055469 | MS.gene65433 | 0.802541 | 5.34E-49 | -1.69E-46 |
MS.gene055537 | MS.gene65433 | 0.827141 | 1.84E-54 | -1.69E-46 |
MS.gene056797 | MS.gene65433 | 0.806858 | 6.71E-50 | -1.69E-46 |
MS.gene058492 | MS.gene65433 | 0.826083 | 3.29E-54 | -1.69E-46 |
MS.gene058649 | MS.gene65433 | 0.820116 | 8.13E-53 | -1.69E-46 |
MS.gene05870 | MS.gene65433 | 0.810022 | 1.42E-50 | -1.69E-46 |
MS.gene061100 | MS.gene65433 | 0.815733 | 7.95E-52 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65433.t1 | MTR_4g007770 | 94.025 | 318 | 13 | 3 | 1 | 317 | 1 | 313 | 0.0 | 606 |
MS.gene65433.t1 | MTR_4g130270 | 59.331 | 359 | 100 | 6 | 1 | 322 | 1 | 350 | 6.39e-137 | 392 |
MS.gene65433.t1 | MTR_2g460730 | 57.303 | 356 | 98 | 8 | 1 | 314 | 1 | 344 | 7.42e-120 | 349 |
MS.gene65433.t1 | MTR_8g044070 | 55.894 | 263 | 86 | 4 | 26 | 288 | 43 | 275 | 2.62e-95 | 289 |
MS.gene65433.t1 | MTR_7g009410 | 66.990 | 206 | 60 | 3 | 22 | 224 | 46 | 246 | 2.85e-94 | 285 |
MS.gene65433.t1 | MTR_6g011490 | 75.595 | 168 | 38 | 1 | 42 | 209 | 65 | 229 | 2.06e-91 | 277 |
MS.gene65433.t1 | MTR_4g127930 | 72.781 | 169 | 46 | 0 | 37 | 205 | 158 | 326 | 7.20e-90 | 278 |
MS.gene65433.t1 | MTR_8g044040 | 74.444 | 180 | 43 | 1 | 33 | 212 | 51 | 227 | 2.85e-89 | 272 |
MS.gene65433.t1 | MTR_8g468920 | 76.271 | 177 | 39 | 1 | 37 | 213 | 68 | 241 | 1.34e-88 | 271 |
MS.gene65433.t1 | MTR_4g065370 | 62.755 | 196 | 70 | 1 | 13 | 205 | 135 | 330 | 5.34e-86 | 269 |
MS.gene65433.t1 | MTR_2g098180 | 63.731 | 193 | 68 | 1 | 13 | 205 | 144 | 334 | 1.48e-85 | 267 |
MS.gene65433.t1 | MTR_7g080460 | 68.889 | 180 | 53 | 1 | 29 | 205 | 247 | 426 | 2.17e-85 | 271 |
MS.gene65433.t1 | MTR_5g015070 | 62.312 | 199 | 70 | 1 | 12 | 205 | 218 | 416 | 6.11e-84 | 263 |
MS.gene65433.t1 | MTR_1g017400 | 69.231 | 169 | 49 | 1 | 37 | 205 | 311 | 476 | 1.03e-79 | 255 |
MS.gene65433.t1 | MTR_8g020510 | 65.385 | 182 | 57 | 2 | 27 | 205 | 234 | 412 | 2.35e-79 | 252 |
MS.gene65433.t1 | MTR_4g097520 | 67.039 | 179 | 54 | 2 | 27 | 205 | 301 | 474 | 1.47e-78 | 252 |
MS.gene65433.t1 | MTR_8g068510 | 65.169 | 178 | 59 | 1 | 28 | 205 | 121 | 295 | 2.54e-78 | 244 |
MS.gene65433.t1 | MTR_3g103460 | 66.480 | 179 | 55 | 2 | 27 | 205 | 301 | 474 | 4.37e-78 | 251 |
MS.gene65433.t1 | MTR_5g031880 | 69.822 | 169 | 48 | 1 | 37 | 205 | 223 | 388 | 3.06e-70 | 227 |
MS.gene65433.t1 | MTR_7g100590 | 49.282 | 209 | 81 | 6 | 42 | 250 | 140 | 323 | 2.39e-46 | 163 |
MS.gene65433.t1 | MTR_7g091390 | 59.060 | 149 | 53 | 2 | 21 | 169 | 40 | 180 | 2.68e-46 | 162 |
MS.gene65433.t1 | MTR_4g094868 | 49.038 | 208 | 84 | 5 | 42 | 248 | 177 | 363 | 6.75e-46 | 163 |
MS.gene65433.t1 | MTR_4g094868 | 48.558 | 208 | 84 | 5 | 42 | 248 | 177 | 362 | 6.48e-45 | 160 |
MS.gene65433.t1 | MTR_2g093060 | 48.039 | 204 | 82 | 5 | 42 | 245 | 135 | 314 | 2.82e-44 | 157 |
MS.gene65433.t1 | MTR_2g093060 | 48.039 | 204 | 82 | 5 | 42 | 245 | 135 | 314 | 2.87e-44 | 157 |
MS.gene65433.t1 | MTR_5g016810 | 49.741 | 193 | 78 | 4 | 42 | 234 | 153 | 326 | 3.63e-44 | 158 |
MS.gene65433.t1 | MTR_4g061200 | 47.087 | 206 | 85 | 5 | 42 | 247 | 132 | 313 | 2.49e-43 | 154 |
MS.gene65433.t1 | MTR_4g061200 | 47.087 | 206 | 85 | 5 | 42 | 247 | 132 | 313 | 6.27e-43 | 154 |
MS.gene65433.t1 | MTR_5g016810 | 47.739 | 199 | 79 | 5 | 42 | 234 | 153 | 332 | 2.17e-41 | 150 |
MS.gene65433.t1 | MTR_4g094868 | 47.059 | 187 | 86 | 3 | 63 | 248 | 32 | 206 | 1.29e-37 | 137 |
MS.gene65433.t1 | MTR_2g093060 | 44.608 | 204 | 74 | 6 | 42 | 245 | 135 | 299 | 4.61e-35 | 132 |
MS.gene65433.t1 | MTR_4g061200 | 43.689 | 206 | 77 | 6 | 42 | 247 | 132 | 298 | 5.26e-34 | 128 |
MS.gene65433.t1 | MTR_7g061190 | 51.724 | 145 | 68 | 2 | 73 | 217 | 3 | 145 | 1.18e-33 | 121 |
MS.gene65433.t1 | MTR_4g061200 | 43.689 | 206 | 77 | 6 | 42 | 247 | 132 | 298 | 1.25e-33 | 129 |
MS.gene65433.t1 | MTR_7g091390 | 62.105 | 95 | 31 | 1 | 75 | 169 | 3 | 92 | 2.31e-24 | 101 |
MS.gene65433.t1 | MTR_1g049140 | 46.512 | 129 | 58 | 3 | 32 | 160 | 128 | 245 | 1.68e-19 | 86.7 |
MS.gene65433.t1 | MTR_1g049140 | 41.104 | 163 | 83 | 5 | 32 | 193 | 128 | 278 | 1.82e-19 | 88.6 |
MS.gene65433.t1 | MTR_1g049140 | 41.104 | 163 | 83 | 5 | 32 | 193 | 128 | 278 | 5.51e-19 | 86.7 |
MS.gene65433.t1 | MTR_3g090510 | 47.222 | 108 | 56 | 1 | 79 | 186 | 163 | 269 | 7.15e-19 | 87.0 |
MS.gene65433.t1 | MTR_7g060560 | 42.391 | 92 | 51 | 2 | 95 | 186 | 172 | 261 | 6.67e-16 | 78.2 |
MS.gene65433.t1 | MTR_1g070045 | 31.967 | 122 | 74 | 3 | 33 | 153 | 57 | 170 | 7.23e-11 | 60.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65433.t1 | AT1G16060 | 61.491 | 322 | 97 | 5 | 3 | 311 | 20 | 327 | 3.24e-113 | 332 |
MS.gene65433.t1 | AT1G79700 | 66.438 | 292 | 68 | 7 | 24 | 314 | 35 | 297 | 1.54e-110 | 324 |
MS.gene65433.t1 | AT1G79700 | 63.014 | 292 | 68 | 8 | 24 | 314 | 35 | 287 | 4.89e-99 | 294 |
MS.gene65433.t1 | AT3G54320 | 73.737 | 198 | 43 | 2 | 24 | 212 | 39 | 236 | 1.74e-91 | 279 |
MS.gene65433.t1 | AT3G54320 | 73.737 | 198 | 43 | 2 | 24 | 212 | 39 | 236 | 2.48e-91 | 279 |
MS.gene65433.t1 | AT5G57390 | 67.553 | 188 | 50 | 1 | 37 | 213 | 81 | 268 | 2.56e-89 | 274 |
MS.gene65433.t1 | AT5G57390 | 67.553 | 188 | 50 | 1 | 37 | 213 | 199 | 386 | 1.61e-88 | 276 |
MS.gene65433.t1 | AT1G51190 | 60.294 | 204 | 81 | 0 | 2 | 205 | 151 | 354 | 7.90e-86 | 269 |
MS.gene65433.t1 | AT1G72570 | 67.033 | 182 | 57 | 1 | 27 | 205 | 206 | 387 | 8.60e-86 | 264 |
MS.gene65433.t1 | AT5G17430 | 71.006 | 169 | 49 | 0 | 37 | 205 | 144 | 312 | 2.46e-84 | 264 |
MS.gene65433.t1 | AT5G17430 | 71.006 | 169 | 49 | 0 | 37 | 205 | 206 | 374 | 5.18e-84 | 265 |
MS.gene65433.t1 | AT3G20840 | 61.224 | 196 | 73 | 1 | 13 | 205 | 150 | 345 | 1.17e-83 | 263 |
MS.gene65433.t1 | AT4G37750 | 68.715 | 179 | 54 | 1 | 27 | 205 | 271 | 447 | 2.37e-82 | 259 |
MS.gene65433.t1 | AT5G65510 | 71.006 | 169 | 49 | 0 | 37 | 205 | 169 | 337 | 6.66e-76 | 239 |
MS.gene65433.t1 | AT5G65510 | 71.006 | 169 | 49 | 0 | 37 | 205 | 227 | 395 | 9.34e-76 | 241 |
MS.gene65433.t1 | AT5G65510 | 71.006 | 169 | 49 | 0 | 37 | 205 | 227 | 395 | 9.34e-76 | 241 |
MS.gene65433.t1 | AT1G16060 | 59.921 | 252 | 74 | 5 | 73 | 311 | 20 | 257 | 3.66e-75 | 232 |
MS.gene65433.t1 | AT1G79700 | 62.656 | 241 | 60 | 7 | 75 | 314 | 10 | 221 | 8.39e-75 | 230 |
MS.gene65433.t1 | AT5G10510 | 69.231 | 169 | 52 | 0 | 37 | 205 | 226 | 394 | 1.46e-73 | 236 |
MS.gene65433.t1 | AT5G10510 | 69.231 | 169 | 52 | 0 | 37 | 205 | 226 | 394 | 1.46e-73 | 236 |
MS.gene65433.t1 | AT5G10510 | 69.231 | 169 | 52 | 0 | 37 | 205 | 249 | 417 | 2.82e-73 | 236 |
MS.gene65433.t1 | AT5G10510 | 69.231 | 169 | 52 | 0 | 37 | 205 | 264 | 432 | 3.95e-73 | 236 |
MS.gene65433.t1 | AT5G10510 | 69.231 | 169 | 52 | 0 | 37 | 205 | 264 | 432 | 3.95e-73 | 236 |
MS.gene65433.t1 | AT1G79700 | 61.925 | 239 | 61 | 7 | 77 | 314 | 6 | 215 | 8.47e-73 | 225 |
MS.gene65433.t1 | AT5G10510 | 67.456 | 169 | 52 | 1 | 37 | 205 | 226 | 391 | 4.55e-69 | 225 |
MS.gene65433.t1 | AT5G65510 | 70.504 | 139 | 41 | 0 | 37 | 175 | 169 | 307 | 3.07e-68 | 216 |
MS.gene65433.t1 | AT5G10510 | 60.317 | 189 | 55 | 1 | 37 | 205 | 264 | 452 | 6.22e-66 | 218 |
MS.gene65433.t1 | AT3G54320 | 79.710 | 138 | 28 | 0 | 75 | 212 | 33 | 170 | 1.71e-65 | 211 |
MS.gene65433.t1 | AT3G54320 | 79.710 | 138 | 28 | 0 | 75 | 212 | 33 | 170 | 1.71e-65 | 211 |
MS.gene65433.t1 | AT1G16060 | 56.522 | 207 | 63 | 5 | 118 | 311 | 1 | 193 | 3.96e-57 | 184 |
MS.gene65433.t1 | AT1G16060 | 56.522 | 207 | 63 | 5 | 118 | 311 | 1 | 193 | 3.96e-57 | 184 |
MS.gene65433.t1 | AT1G16060 | 56.522 | 207 | 63 | 5 | 118 | 311 | 1 | 193 | 3.96e-57 | 184 |
MS.gene65433.t1 | AT1G16060 | 56.522 | 207 | 63 | 5 | 118 | 311 | 1 | 193 | 3.96e-57 | 184 |
MS.gene65433.t1 | AT2G41710 | 51.596 | 188 | 82 | 2 | 21 | 208 | 50 | 228 | 9.06e-51 | 174 |
MS.gene65433.t1 | AT2G41710 | 51.596 | 188 | 82 | 2 | 21 | 208 | 50 | 228 | 1.01e-50 | 174 |
MS.gene65433.t1 | AT2G41710 | 50.259 | 193 | 82 | 3 | 21 | 208 | 50 | 233 | 2.84e-48 | 167 |
MS.gene65433.t1 | AT2G28550 | 43.210 | 243 | 111 | 5 | 42 | 282 | 154 | 371 | 1.55e-46 | 164 |
MS.gene65433.t1 | AT4G36920 | 47.115 | 208 | 87 | 5 | 42 | 237 | 132 | 328 | 4.13e-44 | 156 |
MS.gene65433.t1 | AT4G36920 | 47.115 | 208 | 87 | 5 | 42 | 237 | 132 | 328 | 4.13e-44 | 156 |
MS.gene65433.t1 | AT2G41710 | 43.498 | 223 | 82 | 3 | 21 | 208 | 50 | 263 | 9.44e-44 | 156 |
MS.gene65433.t1 | AT3G54320 | 83.158 | 95 | 16 | 0 | 118 | 212 | 1 | 95 | 6.90e-43 | 150 |
MS.gene65433.t1 | AT5G67180 | 48.936 | 188 | 76 | 4 | 27 | 205 | 73 | 249 | 1.73e-42 | 149 |
MS.gene65433.t1 | AT5G67180 | 48.936 | 188 | 76 | 4 | 27 | 205 | 73 | 249 | 2.45e-42 | 148 |
MS.gene65433.t1 | AT5G67180 | 52.439 | 164 | 67 | 3 | 42 | 205 | 97 | 249 | 5.36e-42 | 149 |
MS.gene65433.t1 | AT2G28550 | 40.329 | 243 | 103 | 6 | 42 | 282 | 154 | 356 | 2.92e-37 | 139 |
MS.gene65433.t1 | AT2G28550 | 52.857 | 140 | 55 | 3 | 42 | 181 | 154 | 282 | 1.42e-35 | 132 |
MS.gene65433.t1 | AT1G16060 | 48.824 | 170 | 84 | 2 | 143 | 311 | 4 | 171 | 4.40e-35 | 126 |
MS.gene65433.t1 | AT5G67180 | 47.239 | 163 | 66 | 4 | 31 | 184 | 77 | 228 | 4.73e-33 | 123 |
MS.gene65433.t1 | AT2G28550 | 53.175 | 126 | 48 | 3 | 42 | 167 | 154 | 268 | 8.93e-30 | 114 |
MS.gene65433.t1 | AT2G28550 | 53.175 | 126 | 48 | 3 | 42 | 167 | 154 | 268 | 8.93e-30 | 114 |
MS.gene65433.t1 | AT2G28550 | 38.095 | 210 | 98 | 4 | 75 | 282 | 11 | 190 | 1.32e-27 | 109 |
MS.gene65433.t1 | AT5G60120 | 42.515 | 167 | 70 | 4 | 32 | 198 | 151 | 291 | 1.97e-25 | 106 |
MS.gene65433.t1 | AT5G60120 | 42.515 | 167 | 70 | 4 | 32 | 198 | 151 | 291 | 2.30e-25 | 106 |
MS.gene65433.t1 | AT5G60120 | 42.515 | 167 | 70 | 4 | 32 | 198 | 151 | 291 | 2.61e-25 | 105 |
MS.gene65433.t1 | AT5G60120 | 42.515 | 167 | 70 | 4 | 32 | 198 | 151 | 291 | 2.61e-25 | 105 |
MS.gene65433.t1 | AT5G60120 | 42.515 | 167 | 70 | 4 | 32 | 198 | 151 | 291 | 2.61e-25 | 105 |
MS.gene65433.t1 | AT5G60120 | 42.515 | 167 | 70 | 4 | 32 | 198 | 151 | 291 | 3.63e-25 | 105 |
MS.gene65433.t1 | AT2G39250 | 47.115 | 104 | 45 | 2 | 42 | 145 | 109 | 202 | 2.13e-24 | 99.8 |
MS.gene65433.t1 | AT2G39250 | 47.115 | 104 | 45 | 2 | 42 | 145 | 109 | 202 | 6.50e-24 | 100 |
MS.gene65433.t1 | AT3G54990 | 48.598 | 107 | 45 | 2 | 42 | 148 | 123 | 219 | 1.20e-19 | 87.0 |
MS.gene65433.t1 | AT3G54990 | 48.598 | 107 | 45 | 2 | 42 | 148 | 123 | 219 | 5.35e-19 | 86.7 |
Find 77 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTAACATGTCTTCGAATTT+TGG | 0.115041 | 4.3:+87719935 | None:intergenic |
CTTTGTGGAGGTGAGTTTCT+TGG | 0.219994 | 4.3:+87726114 | None:intergenic |
TATTTATACCTTGGAACTTA+TGG | 0.227175 | 4.3:-87722892 | MS.gene65433:intron |
CACAAAGAAGCTCAGTTTAT+AGG | 0.267290 | 4.3:-87726098 | MS.gene65433:CDS |
TCGTCGTTGTCTTGTGGTTT+AGG | 0.271322 | 4.3:+87720067 | None:intergenic |
AATGATGATGACAACATATT+TGG | 0.301779 | 4.3:-87719785 | MS.gene65433:intron |
AAAATTGTTTGAATATCTTC+TGG | 0.307325 | 4.3:+87719839 | None:intergenic |
ACAAAGAAGCTCAGTTTATA+GGG | 0.307352 | 4.3:-87726097 | MS.gene65433:CDS |
TTAATAACTAAACCTTCTTA+AGG | 0.317560 | 4.3:+87725102 | None:intergenic |
GCTCGAATTGGCAGGGTCTT+CGG | 0.404820 | 4.3:-87722922 | MS.gene65433:CDS |
ATTTGTGGGATAAGAATTGC+TGG | 0.413847 | 4.3:-87725944 | MS.gene65433:CDS |
GGCAACAAATATTTATACCT+TGG | 0.417814 | 4.3:-87722901 | MS.gene65433:CDS |
ACTTGGCAGCATTGAAGTAC+TGG | 0.425678 | 4.3:-87725390 | MS.gene65433:CDS |
CTTCAATGCTGCCAAGTCAT+AGG | 0.425738 | 4.3:+87725396 | None:intergenic |
CTATAAACTGAGCTTCTTTG+TGG | 0.430666 | 4.3:+87726099 | None:intergenic |
AATATATTGGATCCTTAAGA+AGG | 0.444800 | 4.3:-87725114 | MS.gene65433:intron |
GATGGGAAGCTCGAATTGGC+AGG | 0.455003 | 4.3:-87722930 | MS.gene65433:CDS |
CAGTCAAAAGAAGAATATAT+TGG | 0.457176 | 4.3:-87725127 | MS.gene65433:CDS |
GTCGATATGAAGCTCATTTG+TGG | 0.458701 | 4.3:-87725959 | MS.gene65433:CDS |
CTCGACCATGGTCAACGCTC+TGG | 0.467177 | 4.3:+87714749 | None:intergenic |
CGTGGAATGGTTGATTTGAC+AGG | 0.483312 | 4.3:+87719872 | None:intergenic |
AATGAATCACAAAGCAAGAA+AGG | 0.484111 | 4.3:-87725921 | MS.gene65433:CDS |
TTTCACCGCGGTGGTGGAAG+AGG | 0.486245 | 4.3:+87726155 | None:intergenic |
ATTATCAAGAGGAGCTCAAA+GGG | 0.490116 | 4.3:-87725159 | MS.gene65433:CDS |
TCGATATGAAGCTCATTTGT+GGG | 0.492355 | 4.3:-87725958 | MS.gene65433:CDS |
GGAAGATGGGAAGCTCGAAT+TGG | 0.493895 | 4.3:-87722934 | MS.gene65433:CDS |
GACACCACCACAATGGAAGA+TGG | 0.496318 | 4.3:-87722948 | MS.gene65433:CDS |
CTTGGCAGCATTGAAGTACT+GGG | 0.500070 | 4.3:-87725389 | MS.gene65433:CDS |
TGCTAGCAATAATCAAGAGC+TGG | 0.512163 | 4.3:-87720023 | MS.gene65433:CDS |
CTGGATCTTAATCAAGAACT+TGG | 0.515101 | 4.3:-87720004 | MS.gene65433:CDS |
TGCAGCACGTGCCTATGACT+TGG | 0.516501 | 4.3:-87725407 | MS.gene65433:CDS |
TTTACGTTTCACCGCGGTGG+TGG | 0.525503 | 4.3:+87726149 | None:intergenic |
ATGGCAGCAATAGAGTATAG+AGG | 0.527216 | 4.3:-87720142 | MS.gene65433:CDS |
GAAAATTGAGAATTGTGTCT+TGG | 0.528761 | 4.3:+87725365 | None:intergenic |
GTTAGAAAATTCATCGTCAT+CGG | 0.529129 | 4.3:-87719918 | MS.gene65433:CDS |
TTACTATCGTCGTTGTCTTG+TGG | 0.533843 | 4.3:+87720061 | None:intergenic |
AATATTGTTATAGACATCGT+TGG | 0.541172 | 4.3:-87725986 | MS.gene65433:intron |
ATAAGATCAGTCGAAGATGC+TGG | 0.558029 | 4.3:+87719968 | None:intergenic |
TGGAAATGTCCGACGTGGAA+TGG | 0.559065 | 4.3:+87719859 | None:intergenic |
TGACACAGAGCTTCTCTACA+AGG | 0.563155 | 4.3:-87714773 | MS.gene65433:intron |
ATGGTTGATTTGACAGGCGG+TGG | 0.564133 | 4.3:+87719878 | None:intergenic |
GATCTTAATCAAGAACTTGG+TGG | 0.566882 | 4.3:-87720001 | MS.gene65433:CDS |
TGTTATAGACATCGTTGGAC+CGG | 0.567027 | 4.3:-87725981 | MS.gene65433:intron |
CAAATGAGCTTCATATCGAC+CGG | 0.573235 | 4.3:+87725962 | None:intergenic |
TCAAGAGGAGCTCAAAGGGA+TGG | 0.574531 | 4.3:-87725155 | MS.gene65433:CDS |
GAGGAGCTCAAAGGGATGGA+AGG | 0.577439 | 4.3:-87725151 | MS.gene65433:CDS |
CTTCCCATCTTCCATTGTGG+TGG | 0.578979 | 4.3:+87722944 | None:intergenic |
ACACCACCACAATGGAAGAT+GGG | 0.584570 | 4.3:-87722947 | MS.gene65433:CDS |
AATTATCAAGAGGAGCTCAA+AGG | 0.585976 | 4.3:-87725160 | MS.gene65433:CDS |
TGCTGCCATGTCATAAGCTG+TGG | 0.586967 | 4.3:+87720156 | None:intergenic |
TTAGGTATCAAATTATCAAG+AGG | 0.587787 | 4.3:-87725170 | MS.gene65433:intron |
GAGCTTCCCATCTTCCATTG+TGG | 0.592861 | 4.3:+87722941 | None:intergenic |
CAGTTTATAGGGGTGTCACA+AGG | 0.604860 | 4.3:-87726086 | MS.gene65433:intron |
ACGTTTACGTTTCACCGCGG+TGG | 0.605690 | 4.3:+87726146 | None:intergenic |
TGGAAGTACCATAAGTTCCA+AGG | 0.606508 | 4.3:+87722884 | None:intergenic |
TGGCAGCAATAGAGTATAGA+GGG | 0.606682 | 4.3:-87720141 | MS.gene65433:CDS |
CAAAGCAAGAAAGGAAGACA+AGG | 0.607141 | 4.3:-87725912 | MS.gene65433:intron |
CTTAATCAAGAACTTGGTGG+TGG | 0.608278 | 4.3:-87719998 | MS.gene65433:CDS |
TAAACTGAGCTTCTTTGTGG+AGG | 0.608474 | 4.3:+87726102 | None:intergenic |
ATCAGTCGAAGATGCTGGTG+TGG | 0.611842 | 4.3:+87719973 | None:intergenic |
ACTAAGATCAAAGTTTGTAA+CGG | 0.614633 | 4.3:+87720111 | None:intergenic |
CAAAATACAGAGGTGTAGCA+AGG | 0.618939 | 4.3:-87724836 | MS.gene65433:intron |
ATTGGATATGCAGTATACCT+AGG | 0.620057 | 4.3:-87725745 | MS.gene65433:intron |
ATGGTCAATGCTCTCGACCA+TGG | 0.628729 | 4.3:+87714737 | None:intergenic |
CAAAGAAGCTCAGTTTATAG+GGG | 0.637455 | 4.3:-87726096 | MS.gene65433:CDS |
TTCTTCCTCTTCCACCACCG+CGG | 0.640893 | 4.3:-87726160 | MS.gene65433:CDS |
ATGGGAAGCTCGAATTGGCA+GGG | 0.643491 | 4.3:-87722929 | MS.gene65433:CDS |
AGCAGCCACAGCTTATGACA+TGG | 0.655956 | 4.3:-87720161 | MS.gene65433:CDS |
ATGTTTAGACACCACCACAA+TGG | 0.660446 | 4.3:-87722955 | MS.gene65433:intron |
AAGGTCCAGAGCGTTGACCA+TGG | 0.670531 | 4.3:-87714754 | MS.gene65433:CDS |
GGAATGGTTGATTTGACAGG+CGG | 0.690559 | 4.3:+87719875 | None:intergenic |
TCTTCTGGAAATGTCCGACG+TGG | 0.691543 | 4.3:+87719854 | None:intergenic |
AGAGGAGTCTCAAAATACAG+AGG | 0.710309 | 4.3:-87724846 | MS.gene65433:CDS |
TTGGCAGCATTGAAGTACTG+GGG | 0.726529 | 4.3:-87725388 | MS.gene65433:CDS |
TCAAATCAACCATTCCACGT+CGG | 0.751359 | 4.3:-87719868 | MS.gene65433:CDS |
AACGACGATAGTAACAACCG+TGG | 0.763572 | 4.3:-87720052 | MS.gene65433:CDS |
TTTACGTTTACGTTTCACCG+CGG | 0.779773 | 4.3:+87726143 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 87714741 | 87726226 | 87714741 | ID=MS.gene65433 |
chr4.3 | mRNA | 87714741 | 87726226 | 87714741 | ID=MS.gene65433.t1;Parent=MS.gene65433 |
chr4.3 | exon | 87726087 | 87726226 | 87726087 | ID=MS.gene65433.t1.exon1;Parent=MS.gene65433.t1 |
chr4.3 | CDS | 87726087 | 87726226 | 87726087 | ID=cds.MS.gene65433.t1;Parent=MS.gene65433.t1 |
chr4.3 | exon | 87725913 | 87725995 | 87725913 | ID=MS.gene65433.t1.exon2;Parent=MS.gene65433.t1 |
chr4.3 | CDS | 87725913 | 87725995 | 87725913 | ID=cds.MS.gene65433.t1;Parent=MS.gene65433.t1 |
chr4.3 | exon | 87725746 | 87725754 | 87725746 | ID=MS.gene65433.t1.exon3;Parent=MS.gene65433.t1 |
chr4.3 | CDS | 87725746 | 87725754 | 87725746 | ID=cds.MS.gene65433.t1;Parent=MS.gene65433.t1 |
chr4.3 | exon | 87725363 | 87725451 | 87725363 | ID=MS.gene65433.t1.exon4;Parent=MS.gene65433.t1 |
chr4.3 | CDS | 87725363 | 87725451 | 87725363 | ID=cds.MS.gene65433.t1;Parent=MS.gene65433.t1 |
chr4.3 | exon | 87725115 | 87725188 | 87725115 | ID=MS.gene65433.t1.exon5;Parent=MS.gene65433.t1 |
chr4.3 | CDS | 87725115 | 87725188 | 87725115 | ID=cds.MS.gene65433.t1;Parent=MS.gene65433.t1 |
chr4.3 | exon | 87724837 | 87724887 | 87724837 | ID=MS.gene65433.t1.exon6;Parent=MS.gene65433.t1 |
chr4.3 | CDS | 87724837 | 87724887 | 87724837 | ID=cds.MS.gene65433.t1;Parent=MS.gene65433.t1 |
chr4.3 | exon | 87722893 | 87722969 | 87722893 | ID=MS.gene65433.t1.exon7;Parent=MS.gene65433.t1 |
chr4.3 | CDS | 87722893 | 87722969 | 87722893 | ID=cds.MS.gene65433.t1;Parent=MS.gene65433.t1 |
chr4.3 | exon | 87719786 | 87720196 | 87719786 | ID=MS.gene65433.t1.exon8;Parent=MS.gene65433.t1 |
chr4.3 | CDS | 87719786 | 87720196 | 87719786 | ID=cds.MS.gene65433.t1;Parent=MS.gene65433.t1 |
chr4.3 | exon | 87714741 | 87714787 | 87714741 | ID=MS.gene65433.t1.exon9;Parent=MS.gene65433.t1 |
chr4.3 | CDS | 87714741 | 87714787 | 87714741 | ID=cds.MS.gene65433.t1;Parent=MS.gene65433.t1 |
Gene Sequence |
Protein sequence |