Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65946.t1 | XP_003590036.1 | 95 | 600 | 30 | 0 | 3 | 602 | 1 | 600 | 0.00E+00 | 1181.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65946.t1 | Q96524 | 61.7 | 600 | 203 | 6 | 5 | 598 | 6 | 584 | 4.8e-212 | 738.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65946.t1 | G7I4R1 | 95.0 | 600 | 30 | 0 | 3 | 602 | 1 | 600 | 0.0e+00 | 1181.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049580 | MS.gene65946 | 0.800236 | 1.58E-48 | -1.69E-46 |
| MS.gene050702 | MS.gene65946 | -0.819559 | 1.09E-52 | -1.69E-46 |
| MS.gene051678 | MS.gene65946 | 0.829438 | 5.15E-55 | -1.69E-46 |
| MS.gene052224 | MS.gene65946 | -0.897922 | 8.78E-77 | -1.69E-46 |
| MS.gene053217 | MS.gene65946 | 0.804728 | 1.88E-49 | -1.69E-46 |
| MS.gene053294 | MS.gene65946 | 0.854946 | 8.77E-62 | -1.69E-46 |
| MS.gene053401 | MS.gene65946 | 0.986255 | 3.52E-166 | -1.69E-46 |
| MS.gene05548 | MS.gene65946 | 0.839033 | 2.02E-57 | -1.69E-46 |
| MS.gene055555 | MS.gene65946 | 0.840385 | 8.98E-58 | -1.69E-46 |
| MS.gene055808 | MS.gene65946 | 0.801558 | 8.51E-49 | -1.69E-46 |
| MS.gene056091 | MS.gene65946 | 0.832782 | 7.77E-56 | -1.69E-46 |
| MS.gene058498 | MS.gene65946 | 0.800597 | 1.34E-48 | -1.69E-46 |
| MS.gene059856 | MS.gene65946 | 0.802032 | 6.80E-49 | -1.69E-46 |
| MS.gene059935 | MS.gene65946 | 0.802925 | 4.45E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65946.t1 | MTR_1g043190 | 95.000 | 600 | 30 | 0 | 3 | 602 | 1 | 600 | 0.0 | 1169 |
| MS.gene65946.t1 | MTR_1g076190 | 76.198 | 605 | 137 | 6 | 1 | 602 | 1 | 601 | 0.0 | 939 |
| MS.gene65946.t1 | MTR_1g076190 | 76.198 | 605 | 137 | 6 | 1 | 602 | 1 | 601 | 0.0 | 939 |
| MS.gene65946.t1 | MTR_5g063920 | 52.836 | 617 | 261 | 6 | 2 | 601 | 5 | 608 | 0.0 | 658 |
| MS.gene65946.t1 | MTR_5g063920 | 52.836 | 617 | 261 | 6 | 2 | 601 | 5 | 608 | 0.0 | 658 |
| MS.gene65946.t1 | MTR_5g063920 | 50.780 | 449 | 190 | 6 | 170 | 601 | 10 | 444 | 4.10e-152 | 448 |
| MS.gene65946.t1 | MTR_4g011370 | 28.376 | 511 | 324 | 15 | 6 | 493 | 15 | 506 | 4.20e-49 | 179 |
| MS.gene65946.t1 | MTR_4g011370 | 28.454 | 485 | 306 | 14 | 6 | 466 | 15 | 482 | 2.44e-46 | 171 |
| MS.gene65946.t1 | MTR_4g011370 | 27.059 | 510 | 308 | 16 | 6 | 493 | 15 | 482 | 8.81e-42 | 158 |
| MS.gene65946.t1 | MTR_3g108700 | 27.347 | 490 | 282 | 17 | 2 | 446 | 94 | 554 | 1.83e-29 | 123 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65946.t1 | AT1G04400 | 66.229 | 533 | 171 | 3 | 5 | 534 | 6 | 532 | 0.0 | 734 |
| MS.gene65946.t1 | AT1G04400 | 66.229 | 533 | 171 | 3 | 5 | 534 | 6 | 532 | 0.0 | 734 |
| MS.gene65946.t1 | AT4G08920 | 52.445 | 593 | 270 | 5 | 7 | 596 | 15 | 598 | 0.0 | 632 |
| MS.gene65946.t1 | AT3G15620 | 29.356 | 528 | 325 | 19 | 6 | 505 | 26 | 533 | 1.65e-53 | 192 |
| MS.gene65946.t1 | AT3G15620 | 28.910 | 422 | 256 | 18 | 6 | 399 | 26 | 431 | 7.91e-35 | 137 |
| MS.gene65946.t1 | AT5G24850 | 28.541 | 466 | 289 | 17 | 2 | 444 | 82 | 526 | 7.46e-33 | 133 |
Find 116 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTGATCCTTCAATGTTTA+AGG | 0.114298 | 1.1:+27018709 | MS.gene65946:CDS |
| CTATCTCCGTATATTCATTT+TGG | 0.143302 | 1.1:+27018482 | MS.gene65946:CDS |
| GTTGTGTTTAATCATCTTTA+TGG | 0.220247 | 1.1:+27017366 | MS.gene65946:CDS |
| TAAAACTGTCCTTCCTCTTT+AGG | 0.235821 | 1.1:-27017192 | None:intergenic |
| GAAGCAGTCTCTTTCTCATT+TGG | 0.269217 | 1.1:+27017242 | MS.gene65946:CDS |
| TTGTCCTTCAAGAAAACTTT+TGG | 0.273008 | 1.1:-27019409 | None:intergenic |
| TAGTACTCTTAAAGCACTTT+TGG | 0.293721 | 1.1:+27017314 | MS.gene65946:CDS |
| GTTGGAATTCTCGCCAATTC+AGG | 0.307627 | 1.1:-27019166 | None:intergenic |
| CTCTTTGGATTCTGAAGTAT+TGG | 0.315237 | 1.1:-27019475 | None:intergenic |
| TGCAAGCATCTATTCCAAAA+AGG | 0.318620 | 1.1:-27018090 | None:intergenic |
| TTAGGAGGATCATCACTCTT+TGG | 0.321111 | 1.1:-27019490 | None:intergenic |
| TCTATGTCGATGATTGGTTT+TGG | 0.322368 | 1.1:-27019265 | None:intergenic |
| CAGGATTGTCCTCAATTCTT+AGG | 0.325372 | 1.1:-27017116 | None:intergenic |
| ATAGGACCATAGTTTGGTTT+AGG | 0.327813 | 1.1:+27017088 | MS.gene65946:CDS |
| TGTTGCTTATACCTTGGAAA+TGG | 0.329641 | 1.1:+27018849 | MS.gene65946:CDS |
| CTCATTCCTGCATCAACTAA+TGG | 0.329714 | 1.1:-27018758 | None:intergenic |
| CAAAATGAATATACGGAGAT+AGG | 0.361934 | 1.1:-27018481 | None:intergenic |
| GTTGCTTATACCTTGGAAAT+GGG | 0.366312 | 1.1:+27018850 | MS.gene65946:CDS |
| AATTCTCCAAAATGAATATA+CGG | 0.366624 | 1.1:-27018488 | None:intergenic |
| ATTAATTGACAAGGAGGAAT+AGG | 0.377359 | 1.1:-27018135 | None:intergenic |
| ACCAATCATCGACATAGATT+TGG | 0.378217 | 1.1:+27019270 | MS.gene65946:CDS |
| TCGTCAATGGCTACCTGAAT+TGG | 0.379883 | 1.1:+27019153 | MS.gene65946:CDS |
| TGATCTTGAAAGTGATATCT+TGG | 0.390550 | 1.1:+27018907 | MS.gene65946:CDS |
| ATCCTTCAATGTTTAAGGCT+TGG | 0.397995 | 1.1:+27018714 | MS.gene65946:CDS |
| ATCAGAAAATGGGTATGAAT+AGG | 0.398859 | 1.1:+27017070 | None:intergenic |
| TGCAGGAATGAGAGAGCTTT+GGG | 0.404630 | 1.1:+27018769 | MS.gene65946:CDS |
| ATGCAGGAATGAGAGAGCTT+TGG | 0.404880 | 1.1:+27018768 | MS.gene65946:CDS |
| CGCTCAAGCTCGTGACCATC+AGG | 0.409441 | 1.1:-27018956 | None:intergenic |
| GCCAAATCTATGTCGATGAT+TGG | 0.412225 | 1.1:-27019271 | None:intergenic |
| GATCAGTCACTGAAATCTCT+TGG | 0.432839 | 1.1:+27017264 | MS.gene65946:CDS |
| CTCCAAGCCTTAAACATTGA+AGG | 0.434912 | 1.1:-27018716 | None:intergenic |
| CTTCAATGTTTAAGGCTTGG+AGG | 0.448036 | 1.1:+27018717 | MS.gene65946:CDS |
| AGAGCATCAGGTGTAGAGTT+AGG | 0.453032 | 1.1:+27019232 | MS.gene65946:CDS |
| GTATGAATAGGACCATAGTT+TGG | 0.457722 | 1.1:+27017082 | MS.gene65946:CDS |
| TTGGGTTGGCAGTATATCTC+CGG | 0.458839 | 1.1:+27018926 | MS.gene65946:CDS |
| ATGAGAGAGCTTTGGGCGAC+CGG | 0.460862 | 1.1:+27018776 | MS.gene65946:CDS |
| CTTAGCAAGCGGACTGATAC+CGG | 0.467453 | 1.1:+27019571 | MS.gene65946:CDS |
| ATGTTTAAGGCTTGGAGGCT+AGG | 0.469697 | 1.1:+27018722 | MS.gene65946:CDS |
| CGATAAAGAGGATCGAGAAC+AGG | 0.478530 | 1.1:+27019534 | MS.gene65946:CDS |
| GTCCCTCCTAAACCAAACTA+TGG | 0.481040 | 1.1:-27017094 | None:intergenic |
| TTTCTGTGCAAAGCTACAAT+GGG | 0.484165 | 1.1:+27018004 | MS.gene65946:CDS |
| CCTACTGTGCTAAGAGCATC+AGG | 0.485757 | 1.1:+27019220 | MS.gene65946:CDS |
| ACTGCTTGAACTCTGTCTCT+TGG | 0.489451 | 1.1:-27019641 | None:intergenic |
| TTAGCTAGAGCATGGTCTCC+AGG | 0.494738 | 1.1:+27018359 | MS.gene65946:CDS |
| CTTCTTCGTCAAATGATCAA+AGG | 0.495047 | 1.1:+27019449 | MS.gene65946:CDS |
| CTGCATTAGCTGCTGCTGCA+AGG | 0.495862 | 1.1:+27017136 | MS.gene65946:CDS |
| AAGGCGAATACGTTCGTCAA+TGG | 0.498860 | 1.1:+27019140 | MS.gene65946:CDS |
| TGCATTAGCTGCTGCTGCAA+GGG | 0.499127 | 1.1:+27017137 | MS.gene65946:CDS |
| GGACCATAGTTTGGTTTAGG+AGG | 0.499764 | 1.1:+27017091 | MS.gene65946:CDS |
| GATCTTGAAAGTGATATCTT+GGG | 0.500193 | 1.1:+27018908 | MS.gene65946:CDS |
| CTTTATTTGGTGTCCTAAAG+AGG | 0.502443 | 1.1:+27017179 | MS.gene65946:CDS |
| TTAGCTGCTGCTGCAAGGGA+TGG | 0.503348 | 1.1:+27017141 | MS.gene65946:CDS |
| CGGGTAGAGTGTCGAGGTGG+TGG | 0.504560 | 1.1:+27017217 | MS.gene65946:CDS |
| TTCTTCGTCAAATGATCAAA+GGG | 0.505200 | 1.1:+27019450 | MS.gene65946:CDS |
| GCTTGGAGGCTAGGTAGGAC+TGG | 0.519332 | 1.1:+27018731 | MS.gene65946:CDS |
| CACCACCTCGACACTCTACC+CGG | 0.521428 | 1.1:-27017216 | None:intergenic |
| TCACTGAAATCTCTTGGAGC+TGG | 0.521850 | 1.1:+27017270 | MS.gene65946:CDS |
| CTCAAGCTATATTCAAGATG+TGG | 0.523430 | 1.1:+27019308 | MS.gene65946:CDS |
| TTAAGGCTTGGAGGCTAGGT+AGG | 0.523693 | 1.1:+27018726 | MS.gene65946:CDS |
| CGGTATCAGTCCGCTTGCTA+AGG | 0.524783 | 1.1:-27019570 | None:intergenic |
| CTTGCAGCAGCAGCTAATGC+AGG | 0.525751 | 1.1:-27017135 | None:intergenic |
| GGATATCCATTAGTTGATGC+AGG | 0.527111 | 1.1:+27018752 | MS.gene65946:CDS |
| ATTTCTGTGCAAAGCTACAA+TGG | 0.528775 | 1.1:+27018003 | MS.gene65946:CDS |
| GACCATAGTTTGGTTTAGGA+GGG | 0.533212 | 1.1:+27017092 | MS.gene65946:CDS |
| TATTTCATTCCCCATTTCCA+AGG | 0.533939 | 1.1:-27018860 | None:intergenic |
| ACCGTCGAGAGGCCATTGCT+AGG | 0.534149 | 1.1:+27018662 | MS.gene65946:CDS |
| TAGGAGGGACCTAAGAATTG+AGG | 0.537254 | 1.1:+27017107 | MS.gene65946:CDS |
| ATTTGGTGTCCTAAAGAGGA+AGG | 0.543297 | 1.1:+27017183 | MS.gene65946:CDS |
| CCGTCGAGAGGCCATTGCTA+GGG | 0.543369 | 1.1:+27018663 | MS.gene65946:CDS |
| AATGGCCTCTCGACGGTGAA+CGG | 0.543863 | 1.1:-27018656 | None:intergenic |
| CTAGAGCATGGTCTCCAGGT+TGG | 0.544636 | 1.1:+27018363 | MS.gene65946:CDS |
| CTGAGTGGATCCATCATCCA+TGG | 0.545436 | 1.1:+27019188 | MS.gene65946:CDS |
| TGATCACGAACAAGTGAGAC+TGG | 0.549488 | 1.1:-27017949 | None:intergenic |
| GAGAGCTTTGGGCGACCGGA+TGG | 0.551139 | 1.1:+27018780 | MS.gene65946:CDS |
| GGATGATGGATCCACTCAGT+TGG | 0.557800 | 1.1:-27019184 | None:intergenic |
| ATTCAAGATGTGGGAAGATG+AGG | 0.561877 | 1.1:+27019318 | MS.gene65946:CDS |
| ACAGTAGGTGGTGCATTCCA+TGG | 0.562035 | 1.1:-27019205 | None:intergenic |
| TTGCTTATACCTTGGAAATG+GGG | 0.565679 | 1.1:+27018851 | MS.gene65946:CDS |
| AATTTCAAGTTCCCTAGCAA+TGG | 0.567410 | 1.1:-27018674 | None:intergenic |
| TTGATCAATGCATGACACTC+CGG | 0.568405 | 1.1:-27019590 | None:intergenic |
| GTGGTGCATTCCATGGATGA+TGG | 0.569550 | 1.1:-27019198 | None:intergenic |
| TGGTCACGAGCTTGAGCGGT+TGG | 0.573358 | 1.1:+27018961 | MS.gene65946:CDS |
| CCTGATGCTCTTAGCACAGT+AGG | 0.576112 | 1.1:-27019220 | None:intergenic |
| TTAGGACACCAAATAAAGAC+AGG | 0.576690 | 1.1:-27017174 | None:intergenic |
| TGGGTTGGCAGTATATCTCC+GGG | 0.580136 | 1.1:+27018927 | MS.gene65946:CDS |
| CTGATGGTCACGAGCTTGAG+CGG | 0.582318 | 1.1:+27018957 | MS.gene65946:CDS |
| TCAAGCTATATTCAAGATGT+GGG | 0.585612 | 1.1:+27019309 | MS.gene65946:CDS |
| TTGAAAGTGATATCTTGGGT+TGG | 0.587182 | 1.1:+27018912 | MS.gene65946:CDS |
| ATTTAAGTAACCTTAGCAAG+CGG | 0.591683 | 1.1:+27019560 | MS.gene65946:CDS |
| TGTGAGGAAAGTATTTCAGT+TGG | 0.593409 | 1.1:+27018514 | MS.gene65946:CDS |
| TGGCATATATATGACGAAAG+TGG | 0.593822 | 1.1:+27018045 | MS.gene65946:CDS |
| ATGGATACACAACAAAATGC+GGG | 0.597128 | 1.1:+27018799 | MS.gene65946:CDS |
| CCCTAGCAATGGCCTCTCGA+CGG | 0.600478 | 1.1:-27018663 | None:intergenic |
| GTGACCATCAGGTAAGCTCC+CGG | 0.601745 | 1.1:-27018945 | None:intergenic |
| ATTGAAGGATCAGTATTCCA+AGG | 0.605723 | 1.1:-27018701 | None:intergenic |
| AAACATTCAATTGAGCAACT+AGG | 0.612068 | 1.1:+27018299 | MS.gene65946:CDS |
| CTTTCGTCATATATATGCCA+CGG | 0.614882 | 1.1:-27018042 | None:intergenic |
| ATGCATTATTAGCTAGAGCA+TGG | 0.623271 | 1.1:+27018351 | MS.gene65946:CDS |
| TGAGTACTCTCGAAATCCAA+TGG | 0.628966 | 1.1:-27018612 | None:intergenic |
| GATGGATACACAACAAAATG+CGG | 0.629254 | 1.1:+27018798 | MS.gene65946:CDS |
| GGGACAAAATACGATTCAGA+AGG | 0.630951 | 1.1:+27019121 | MS.gene65946:CDS |
| TTTATCCGGGTAGAGTGTCG+AGG | 0.638088 | 1.1:+27017211 | MS.gene65946:CDS |
| GCTAGAATTAATTGACAAGG+AGG | 0.644384 | 1.1:-27018141 | None:intergenic |
| TGAGCGGTTGGACGATCCAG+AGG | 0.648762 | 1.1:+27018973 | MS.gene65946:CDS |
| TGGCGAGAATTCCAACTGAG+TGG | 0.655146 | 1.1:+27019173 | MS.gene65946:CDS |
| ATCTCCGGGAGCTTACCTGA+TGG | 0.656477 | 1.1:+27018941 | MS.gene65946:CDS |
| AGGTTGGAGCAAAAGTGACA+AGG | 0.665168 | 1.1:+27018379 | MS.gene65946:CDS |
| GACGAAGAAGTAGCGCCGCG+TGG | 0.670480 | 1.1:-27019436 | None:intergenic |
| AATATACGGAGATAGGAGTG+AGG | 0.680107 | 1.1:-27018474 | None:intergenic |
| TGTCAATTAATTCTAGCACA+AGG | 0.682737 | 1.1:+27018147 | MS.gene65946:CDS |
| TGTGCTAGAATTAATTGACA+AGG | 0.684750 | 1.1:-27018144 | None:intergenic |
| GATGCTCTTAGCACAGTAGG+TGG | 0.688179 | 1.1:-27019217 | None:intergenic |
| ATCCGGGTAGAGTGTCGAGG+TGG | 0.688806 | 1.1:+27017214 | MS.gene65946:CDS |
| TTGAAGGACAAGGCTCCACG+CGG | 0.705632 | 1.1:+27019421 | MS.gene65946:CDS |
| GGGACTTGTTACATGAACCG+TGG | 0.709661 | 1.1:+27018025 | MS.gene65946:CDS |
| TTCTGTGCAAAGCTACAATG+GGG | 0.718476 | 1.1:+27018005 | MS.gene65946:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTCTCCAAAATGAATATA+CGG | - | chr1.1:27018491-27018510 | None:intergenic | 20.0% |
| !! | ACAAAAAGTAGATTAAATCT+TGG | + | chr1.1:27018440-27018459 | MS.gene65946:CDS | 20.0% |
| !!! | AAACTTGTTTACAATTGATA+TGG | + | chr1.1:27017512-27017531 | MS.gene65946:intron | 20.0% |
| ! | AAAGAAAAATTAGTGGAACT+TGG | + | chr1.1:27017979-27017998 | MS.gene65946:CDS | 25.0% |
| ! | AGATATCATACAAGTATTTG+TGG | + | chr1.1:27017699-27017718 | MS.gene65946:intron | 25.0% |
| ! | CAACATCAAAGAAAAATTAG+TGG | + | chr1.1:27017972-27017991 | MS.gene65946:CDS | 25.0% |
| ! | GTTGTGTTTAATCATCTTTA+TGG | + | chr1.1:27017366-27017385 | MS.gene65946:CDS | 25.0% |
| ! | TCAAAAAAAACTAGTGTAGT+TGG | + | chr1.1:27017645-27017664 | MS.gene65946:intron | 25.0% |
| ! | TGTAACAAAACTAGTATAGT+TGG | + | chr1.1:27017612-27017631 | MS.gene65946:intron | 25.0% |
| !! | AAAGAAATCCATCTTTTCAA+TGG | - | chr1.1:27017401-27017420 | None:intergenic | 25.0% |
| !! | AATGGGGAATGAAATATTTT+TGG | + | chr1.1:27018867-27018886 | MS.gene65946:CDS | 25.0% |
| !! | ACAAAAATGTATCGATAAAG+AGG | + | chr1.1:27019522-27019541 | MS.gene65946:CDS | 25.0% |
| !! | ATGGGGAATGAAATATTTTT+GGG | + | chr1.1:27018868-27018887 | MS.gene65946:CDS | 25.0% |
| !! | TAAAAATGTTGCTTATACCT+TGG | + | chr1.1:27018843-27018862 | MS.gene65946:CDS | 25.0% |
| !!! | AACTTCATGTTTATTTTCTG+AGG | - | chr1.1:27019362-27019381 | None:intergenic | 25.0% |
| !!! | ACTACACTAGTTTTTTTTGA+AGG | - | chr1.1:27017645-27017664 | None:intergenic | 25.0% |
| !!! | CATTTTTGTTTCTTCGTATT+AGG | - | chr1.1:27019511-27019530 | None:intergenic | 25.0% |
| !!! | GTTTGTTTCTTTTGTTGTTT+TGG | + | chr1.1:27018259-27018278 | MS.gene65946:intron | 25.0% |
| !!! | TACTTTTTGTGTAGTGAATT+AGG | - | chr1.1:27018430-27018449 | None:intergenic | 25.0% |
| AAACATTCAATTGAGCAACT+AGG | + | chr1.1:27018299-27018318 | MS.gene65946:CDS | 30.0% | |
| AAGTGATTCCATTGAAAAGA+TGG | + | chr1.1:27017390-27017409 | MS.gene65946:intron | 30.0% | |
| ATTAATTGACAAGGAGGAAT+AGG | - | chr1.1:27018138-27018157 | None:intergenic | 30.0% | |
| ATTTAAGTAACCTTAGCAAG+CGG | + | chr1.1:27019560-27019579 | MS.gene65946:CDS | 30.0% | |
| CAAAATGAATATACGGAGAT+AGG | - | chr1.1:27018484-27018503 | None:intergenic | 30.0% | |
| CAGATAACCAAATAGAAAGA+CGG | - | chr1.1:27017803-27017822 | None:intergenic | 30.0% | |
| GAATGAGTGTGATAAATTCA+TGG | - | chr1.1:27017762-27017781 | None:intergenic | 30.0% | |
| GATCTTGAAAGTGATATCTT+GGG | + | chr1.1:27018908-27018927 | MS.gene65946:CDS | 30.0% | |
| TACCTCGAGAGTTAATAAAT+CGG | + | chr1.1:27017479-27017498 | MS.gene65946:intron | 30.0% | |
| TACTGATCCTTCAATGTTTA+AGG | + | chr1.1:27018709-27018728 | MS.gene65946:CDS | 30.0% | |
| TCAAGCTATATTCAAGATGT+GGG | + | chr1.1:27019309-27019328 | MS.gene65946:CDS | 30.0% | |
| TCTATTCCAAAAAGGATCAA+AGG | - | chr1.1:27018085-27018104 | None:intergenic | 30.0% | |
| TGAATTTATCACACTCATTC+CGG | + | chr1.1:27017762-27017781 | MS.gene65946:intron | 30.0% | |
| TGATCTTGAAAGTGATATCT+TGG | + | chr1.1:27018907-27018926 | MS.gene65946:CDS | 30.0% | |
| TGTCAATTAATTCTAGCACA+AGG | + | chr1.1:27018147-27018166 | MS.gene65946:CDS | 30.0% | |
| TGTGCTAGAATTAATTGACA+AGG | - | chr1.1:27018147-27018166 | None:intergenic | 30.0% | |
| TTCTTCGTCAAATGATCAAA+GGG | + | chr1.1:27019450-27019469 | MS.gene65946:CDS | 30.0% | |
| ! | AAAAGTTTTCTTGAAGGACA+AGG | + | chr1.1:27019411-27019430 | MS.gene65946:CDS | 30.0% |
| ! | AACTTTTGTGAACAGATTCA+AGG | + | chr1.1:27019100-27019119 | MS.gene65946:intron | 30.0% |
| ! | ACTTTTGTGAACAGATTCAA+GGG | + | chr1.1:27019101-27019120 | MS.gene65946:intron | 30.0% |
| ! | CAGATTTTATGGAAAAACGA+AGG | + | chr1.1:27018548-27018567 | MS.gene65946:CDS | 30.0% |
| ! | CTATCTCCGTATATTCATTT+TGG | + | chr1.1:27018482-27018501 | MS.gene65946:CDS | 30.0% |
| ! | GATTCCAAAAGTTTTCTTGA+AGG | + | chr1.1:27019405-27019424 | MS.gene65946:CDS | 30.0% |
| ! | TTACAACCTTTGATCCTTTT+TGG | + | chr1.1:27018076-27018095 | MS.gene65946:CDS | 30.0% |
| ! | TTGTCCTTCAAGAAAACTTT+TGG | - | chr1.1:27019412-27019431 | None:intergenic | 30.0% |
| ! | TTGTGTTTTCTTGTATTGCA+CGG | + | chr1.1:27019000-27019019 | MS.gene65946:intron | 30.0% |
| !! | CTGTTTTTCCTGTCTTTATT+TGG | + | chr1.1:27017166-27017185 | MS.gene65946:CDS | 30.0% |
| !! | TAGGTTGTTTTCGACAAATT+CGG | - | chr1.1:27018411-27018430 | None:intergenic | 30.0% |
| !! | TAGTACTCTTAAAGCACTTT+TGG | + | chr1.1:27017314-27017333 | MS.gene65946:CDS | 30.0% |
| !! | TTCATGTTTATTTTCTGAGG+TGG | - | chr1.1:27019359-27019378 | None:intergenic | 30.0% |
| !! | TTTTGTTTCTTCGTATTAGG+AGG | - | chr1.1:27019508-27019527 | None:intergenic | 30.0% |
| !!! | GGAACTTGAAATTTTTTCCT+TGG | + | chr1.1:27018684-27018703 | MS.gene65946:CDS | 30.0% |
| AAAAACGAAGGAAACATCGT+CGG | + | chr1.1:27018560-27018579 | MS.gene65946:CDS | 35.0% | |
| AAGAAAACACAACTTACCTC+TGG | - | chr1.1:27018992-27019011 | None:intergenic | 35.0% | |
| ACCAATCATCGACATAGATT+TGG | + | chr1.1:27019270-27019289 | MS.gene65946:CDS | 35.0% | |
| ACTGGATCTGTTAAAAGAAG+TGG | - | chr1.1:27017934-27017953 | None:intergenic | 35.0% | |
| ATGCATTATTAGCTAGAGCA+TGG | + | chr1.1:27018351-27018370 | MS.gene65946:CDS | 35.0% | |
| ATGGATACACAACAAAATGC+GGG | + | chr1.1:27018799-27018818 | MS.gene65946:CDS | 35.0% | |
| ATTGAAGGATCAGTATTCCA+AGG | - | chr1.1:27018704-27018723 | None:intergenic | 35.0% | |
| ATTTCTGTGCAAAGCTACAA+TGG | + | chr1.1:27018003-27018022 | MS.gene65946:CDS | 35.0% | |
| CTATTTGGTTATCTGACATG+CGG | + | chr1.1:27017808-27017827 | MS.gene65946:intron | 35.0% | |
| CTCAAGCTATATTCAAGATG+TGG | + | chr1.1:27019308-27019327 | MS.gene65946:CDS | 35.0% | |
| CTTCTTCGTCAAATGATCAA+AGG | + | chr1.1:27019449-27019468 | MS.gene65946:CDS | 35.0% | |
| CTTTCGTCATATATATGCCA+CGG | - | chr1.1:27018045-27018064 | None:intergenic | 35.0% | |
| GATATGAAACAGATCAGTGA+AGG | - | chr1.1:27017884-27017903 | None:intergenic | 35.0% | |
| GATGGATACACAACAAAATG+CGG | + | chr1.1:27018798-27018817 | MS.gene65946:CDS | 35.0% | |
| GCTAGAATTAATTGACAAGG+AGG | - | chr1.1:27018144-27018163 | None:intergenic | 35.0% | |
| GTATGAATAGGACCATAGTT+TGG | + | chr1.1:27017082-27017101 | MS.gene65946:CDS | 35.0% | |
| GTTGCTTATACCTTGGAAAT+GGG | + | chr1.1:27018850-27018869 | MS.gene65946:CDS | 35.0% | |
| TAAAACTGTCCTTCCTCTTT+AGG | - | chr1.1:27017195-27017214 | None:intergenic | 35.0% | |
| TAAAAGAAGTGGAGATCATC+AGG | - | chr1.1:27017923-27017942 | None:intergenic | 35.0% | |
| TATTTCATTCCCCATTTCCA+AGG | - | chr1.1:27018863-27018882 | None:intergenic | 35.0% | |
| TGCAAGCATCTATTCCAAAA+AGG | - | chr1.1:27018093-27018112 | None:intergenic | 35.0% | |
| TGGCATATATATGACGAAAG+TGG | + | chr1.1:27018045-27018064 | MS.gene65946:CDS | 35.0% | |
| TGTTTCACCGTCTTTCTATT+TGG | + | chr1.1:27017793-27017812 | MS.gene65946:intron | 35.0% | |
| TTAGGACACCAAATAAAGAC+AGG | - | chr1.1:27017177-27017196 | None:intergenic | 35.0% | |
| TTATTAACTCTCGAGGTAAC+AGG | - | chr1.1:27017477-27017496 | None:intergenic | 35.0% | |
| TTGAAAGTGATATCTTGGGT+TGG | + | chr1.1:27018912-27018931 | MS.gene65946:CDS | 35.0% | |
| TTGCTTATACCTTGGAAATG+GGG | + | chr1.1:27018851-27018870 | MS.gene65946:CDS | 35.0% | |
| TTTCTGTGCAAAGCTACAAT+GGG | + | chr1.1:27018004-27018023 | MS.gene65946:CDS | 35.0% | |
| ! | ACATAAACTGATTCTCACTC+TGG | - | chr1.1:27017556-27017575 | None:intergenic | 35.0% |
| ! | ATAGGACCATAGTTTGGTTT+AGG | + | chr1.1:27017088-27017107 | MS.gene65946:CDS | 35.0% |
| ! | ATCCTTCAATGTTTAAGGCT+TGG | + | chr1.1:27018714-27018733 | MS.gene65946:CDS | 35.0% |
| ! | CACGAACGAAACAGATTTTA+TGG | + | chr1.1:27018537-27018556 | MS.gene65946:CDS | 35.0% |
| ! | TGTTGCTTATACCTTGGAAA+TGG | + | chr1.1:27018849-27018868 | MS.gene65946:CDS | 35.0% |
| !! | AATTTCAAGTTCCCTAGCAA+TGG | - | chr1.1:27018677-27018696 | None:intergenic | 35.0% |
| !! | ATTTTGGAGAATTGAGTGTG+AGG | + | chr1.1:27018498-27018517 | MS.gene65946:CDS | 35.0% |
| !! | CATTTTGTTGTGTATCCATC+CGG | - | chr1.1:27018798-27018817 | None:intergenic | 35.0% |
| !! | CTCTTTGGATTCTGAAGTAT+TGG | - | chr1.1:27019478-27019497 | None:intergenic | 35.0% |
| !! | CTTTATTTGGTGTCCTAAAG+AGG | + | chr1.1:27017179-27017198 | MS.gene65946:CDS | 35.0% |
| !! | TACCGATTTATTAACTCTCG+AGG | - | chr1.1:27017484-27017503 | None:intergenic | 35.0% |
| !! | TGTGAGGAAAGTATTTCAGT+TGG | + | chr1.1:27018514-27018533 | MS.gene65946:CDS | 35.0% |
| !!! | ACGTTTTTTCTCAAAGCCAT+TGG | + | chr1.1:27018596-27018615 | MS.gene65946:CDS | 35.0% |
| !!! | TCTATGTCGATGATTGGTTT+TGG | - | chr1.1:27019268-27019287 | None:intergenic | 35.0% |
| !!! | TCTTTTGTTGTTTTGGTGAC+AGG | + | chr1.1:27018266-27018285 | MS.gene65946:intron | 35.0% |
| AATATACGGAGATAGGAGTG+AGG | - | chr1.1:27018477-27018496 | None:intergenic | 40.0% | |
| ATTCAAGATGTGGGAAGATG+AGG | + | chr1.1:27019318-27019337 | MS.gene65946:CDS | 40.0% | |
| CAGGATTGTCCTCAATTCTT+AGG | - | chr1.1:27017119-27017138 | None:intergenic | 40.0% | |
| CTCATTCCTGCATCAACTAA+TGG | - | chr1.1:27018761-27018780 | None:intergenic | 40.0% | |
| CTCCAAGCCTTAAACATTGA+AGG | - | chr1.1:27018719-27018738 | None:intergenic | 40.0% | |
| GAAGCAGTCTCTTTCTCATT+TGG | + | chr1.1:27017242-27017261 | MS.gene65946:CDS | 40.0% | |
| GATCAGTCACTGAAATCTCT+TGG | + | chr1.1:27017264-27017283 | MS.gene65946:CDS | 40.0% | |
| GCCAAATCTATGTCGATGAT+TGG | - | chr1.1:27019274-27019293 | None:intergenic | 40.0% | |
| GGGACAAAATACGATTCAGA+AGG | + | chr1.1:27019121-27019140 | MS.gene65946:CDS | 40.0% | |
| TGAGTACTCTCGAAATCCAA+TGG | - | chr1.1:27018615-27018634 | None:intergenic | 40.0% | |
| TTAGGAGGATCATCACTCTT+TGG | - | chr1.1:27019493-27019512 | None:intergenic | 40.0% | |
| TTCTGTGCAAAGCTACAATG+GGG | + | chr1.1:27018005-27018024 | MS.gene65946:CDS | 40.0% | |
| TTGATCAATGCATGACACTC+CGG | - | chr1.1:27019593-27019612 | None:intergenic | 40.0% | |
| ! | CTTCAATGTTTAAGGCTTGG+AGG | + | chr1.1:27018717-27018736 | MS.gene65946:CDS | 40.0% |
| ! | GACCATAGTTTGGTTTAGGA+GGG | + | chr1.1:27017092-27017111 | MS.gene65946:CDS | 40.0% |
| ! | GGATATCCATTAGTTGATGC+AGG | + | chr1.1:27018752-27018771 | MS.gene65946:CDS | 40.0% |
| !! | AGAGGAAGGACAGTTTTATC+CGG | + | chr1.1:27017197-27017216 | MS.gene65946:CDS | 40.0% |
| !! | ATTTGGTGTCCTAAAGAGGA+AGG | + | chr1.1:27017183-27017202 | MS.gene65946:CDS | 40.0% |
| AAGGCGAATACGTTCGTCAA+TGG | + | chr1.1:27019140-27019159 | MS.gene65946:CDS | 45.0% | |
| ACGGTGAAACATTCAGACAC+CGG | - | chr1.1:27017784-27017803 | None:intergenic | 45.0% | |
| ACTGCTTGAACTCTGTCTCT+TGG | - | chr1.1:27019644-27019663 | None:intergenic | 45.0% | |
| AGGTTGGAGCAAAAGTGACA+AGG | + | chr1.1:27018379-27018398 | MS.gene65946:CDS | 45.0% | |
| ATGCAGGAATGAGAGAGCTT+TGG | + | chr1.1:27018768-27018787 | MS.gene65946:CDS | 45.0% | |
| CGATAAAGAGGATCGAGAAC+AGG | + | chr1.1:27019534-27019553 | MS.gene65946:CDS | 45.0% | |
| GTCCCTCCTAAACCAAACTA+TGG | - | chr1.1:27017097-27017116 | None:intergenic | 45.0% | |
| GTTGGAATTCTCGCCAATTC+AGG | - | chr1.1:27019169-27019188 | None:intergenic | 45.0% | |
| TAGGAGGGACCTAAGAATTG+AGG | + | chr1.1:27017107-27017126 | MS.gene65946:CDS | 45.0% | |
| TCACTGAAATCTCTTGGAGC+TGG | + | chr1.1:27017270-27017289 | MS.gene65946:CDS | 45.0% | |
| TCGTCAATGGCTACCTGAAT+TGG | + | chr1.1:27019153-27019172 | MS.gene65946:CDS | 45.0% | |
| TGATCACGAACAAGTGAGAC+TGG | - | chr1.1:27017952-27017971 | None:intergenic | 45.0% | |
| TGCAGGAATGAGAGAGCTTT+GGG | + | chr1.1:27018769-27018788 | MS.gene65946:CDS | 45.0% | |
| ! | AGAGCATCAGGTGTAGAGTT+AGG | + | chr1.1:27019232-27019251 | MS.gene65946:CDS | 45.0% |
| ! | ATGTTTAAGGCTTGGAGGCT+AGG | + | chr1.1:27018722-27018741 | MS.gene65946:CDS | 45.0% |
| ! | GGACCATAGTTTGGTTTAGG+AGG | + | chr1.1:27017091-27017110 | MS.gene65946:CDS | 45.0% |
| !! | GAGGAAGGACAGTTTTATCC+GGG | + | chr1.1:27017198-27017217 | MS.gene65946:CDS | 45.0% |
| !! | TTGGGTTGGCAGTATATCTC+CGG | + | chr1.1:27018926-27018945 | MS.gene65946:CDS | 45.0% |
| !!! | TTGTCACTTTTGCTCCAACC+TGG | - | chr1.1:27018380-27018399 | None:intergenic | 45.0% |
| ACAGTAGGTGGTGCATTCCA+TGG | - | chr1.1:27019208-27019227 | None:intergenic | 50.0% | |
| CCTGATGCTCTTAGCACAGT+AGG | - | chr1.1:27019223-27019242 | None:intergenic | 50.0% | |
| CTGAGTGGATCCATCATCCA+TGG | + | chr1.1:27019188-27019207 | MS.gene65946:CDS | 50.0% | |
| GATGCTCTTAGCACAGTAGG+TGG | - | chr1.1:27019220-27019239 | None:intergenic | 50.0% | |
| GTGGTGCATTCCATGGATGA+TGG | - | chr1.1:27019201-27019220 | None:intergenic | 50.0% | |
| TGCATTAGCTGCTGCTGCAA+GGG | + | chr1.1:27017137-27017156 | MS.gene65946:CDS | 50.0% | |
| TGGCGAGAATTCCAACTGAG+TGG | + | chr1.1:27019173-27019192 | MS.gene65946:CDS | 50.0% | |
| TTAAGGCTTGGAGGCTAGGT+AGG | + | chr1.1:27018726-27018745 | MS.gene65946:CDS | 50.0% | |
| TTAGCTAGAGCATGGTCTCC+AGG | + | chr1.1:27018359-27018378 | MS.gene65946:CDS | 50.0% | |
| !! | CCTACTGTGCTAAGAGCATC+AGG | + | chr1.1:27019220-27019239 | MS.gene65946:CDS | 50.0% |
| !! | CTTAGCAAGCGGACTGATAC+CGG | + | chr1.1:27019571-27019590 | MS.gene65946:CDS | 50.0% |
| !! | GGATGATGGATCCACTCAGT+TGG | - | chr1.1:27019187-27019206 | None:intergenic | 50.0% |
| !! | GGGACTTGTTACATGAACCG+TGG | + | chr1.1:27018025-27018044 | MS.gene65946:CDS | 50.0% |
| !! | TGGGTTGGCAGTATATCTCC+GGG | + | chr1.1:27018927-27018946 | MS.gene65946:CDS | 50.0% |
| !! | TTTATCCGGGTAGAGTGTCG+AGG | + | chr1.1:27017211-27017230 | MS.gene65946:CDS | 50.0% |
| AATGGCCTCTCGACGGTGAA+CGG | - | chr1.1:27018659-27018678 | None:intergenic | 55.0% | |
| ATCTCCGGGAGCTTACCTGA+TGG | + | chr1.1:27018941-27018960 | MS.gene65946:CDS | 55.0% | |
| CTAGAGCATGGTCTCCAGGT+TGG | + | chr1.1:27018363-27018382 | MS.gene65946:CDS | 55.0% | |
| CTGATGGTCACGAGCTTGAG+CGG | + | chr1.1:27018957-27018976 | MS.gene65946:CDS | 55.0% | |
| CTGCATTAGCTGCTGCTGCA+AGG | + | chr1.1:27017136-27017155 | MS.gene65946:CDS | 55.0% | |
| CTTGCAGCAGCAGCTAATGC+AGG | - | chr1.1:27017138-27017157 | None:intergenic | 55.0% | |
| GTGACCATCAGGTAAGCTCC+CGG | - | chr1.1:27018948-27018967 | None:intergenic | 55.0% | |
| TTAGCTGCTGCTGCAAGGGA+TGG | + | chr1.1:27017141-27017160 | MS.gene65946:CDS | 55.0% | |
| TTGAAGGACAAGGCTCCACG+CGG | + | chr1.1:27019421-27019440 | MS.gene65946:CDS | 55.0% | |
| ! | CGGTATCAGTCCGCTTGCTA+AGG | - | chr1.1:27019573-27019592 | None:intergenic | 55.0% |
| ! | GTTTTCCGTTCACCGTCGAG+AGG | + | chr1.1:27018651-27018670 | MS.gene65946:CDS | 55.0% |
| !! | ATGAGAGAGCTTTGGGCGAC+CGG | + | chr1.1:27018776-27018795 | MS.gene65946:CDS | 55.0% |
| ACCGTCGAGAGGCCATTGCT+AGG | + | chr1.1:27018662-27018681 | MS.gene65946:CDS | 60.0% | |
| CACCACCTCGACACTCTACC+CGG | - | chr1.1:27017219-27017238 | None:intergenic | 60.0% | |
| CCCTAGCAATGGCCTCTCGA+CGG | - | chr1.1:27018666-27018685 | None:intergenic | 60.0% | |
| CCGTCGAGAGGCCATTGCTA+GGG | + | chr1.1:27018663-27018682 | MS.gene65946:CDS | 60.0% | |
| CGCTCAAGCTCGTGACCATC+AGG | - | chr1.1:27018959-27018978 | None:intergenic | 60.0% | |
| GCTTGGAGGCTAGGTAGGAC+TGG | + | chr1.1:27018731-27018750 | MS.gene65946:CDS | 60.0% | |
| TGAGCGGTTGGACGATCCAG+AGG | + | chr1.1:27018973-27018992 | MS.gene65946:CDS | 60.0% | |
| TGGTCACGAGCTTGAGCGGT+TGG | + | chr1.1:27018961-27018980 | MS.gene65946:CDS | 60.0% | |
| !! | ATCCGGGTAGAGTGTCGAGG+TGG | + | chr1.1:27017214-27017233 | MS.gene65946:CDS | 60.0% |
| GACGAAGAAGTAGCGCCGCG+TGG | - | chr1.1:27019439-27019458 | None:intergenic | 65.0% | |
| !! | CGGGTAGAGTGTCGAGGTGG+TGG | + | chr1.1:27017217-27017236 | MS.gene65946:CDS | 65.0% |
| !! | GAGAGCTTTGGGCGACCGGA+TGG | + | chr1.1:27018780-27018799 | MS.gene65946:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 27017078 | 27019684 | 27017078 | ID=MS.gene65946 |
| chr1.1 | mRNA | 27017078 | 27019684 | 27017078 | ID=MS.gene65946.t1;Parent=MS.gene65946 |
| chr1.1 | exon | 27017078 | 27017387 | 27017078 | ID=MS.gene65946.t1.exon1;Parent=MS.gene65946.t1 |
| chr1.1 | CDS | 27017078 | 27017387 | 27017078 | ID=cds.MS.gene65946.t1;Parent=MS.gene65946.t1 |
| chr1.1 | exon | 27017947 | 27018168 | 27017947 | ID=MS.gene65946.t1.exon2;Parent=MS.gene65946.t1 |
| chr1.1 | CDS | 27017947 | 27018168 | 27017947 | ID=cds.MS.gene65946.t1;Parent=MS.gene65946.t1 |
| chr1.1 | exon | 27018288 | 27018994 | 27018288 | ID=MS.gene65946.t1.exon3;Parent=MS.gene65946.t1 |
| chr1.1 | CDS | 27018288 | 27018994 | 27018288 | ID=cds.MS.gene65946.t1;Parent=MS.gene65946.t1 |
| chr1.1 | exon | 27019115 | 27019684 | 27019115 | ID=MS.gene65946.t1.exon4;Parent=MS.gene65946.t1 |
| chr1.1 | CDS | 27019115 | 27019684 | 27019115 | ID=cds.MS.gene65946.t1;Parent=MS.gene65946.t1 |
| Gene Sequence |
| Protein sequence |
