Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66047.t1 | XP_003622990.1 | 98.8 | 246 | 3 | 0 | 1 | 246 | 1 | 246 | 7.10E-121 | 443.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66047.t1 | Q9SAI5 | 47.8 | 245 | 126 | 2 | 4 | 246 | 3 | 247 | 3.1e-56 | 219.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66047.t1 | G7L2C7 | 98.8 | 246 | 3 | 0 | 1 | 246 | 1 | 246 | 5.1e-121 | 443.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04918 | MS.gene66047 | 0.813059 | 3.10E-51 | -1.69E-46 |
| MS.gene04920 | MS.gene66047 | 0.80137 | 9.30E-49 | -1.69E-46 |
| MS.gene05689 | MS.gene66047 | 0.802182 | 6.33E-49 | -1.69E-46 |
| MS.gene06094 | MS.gene66047 | 0.809448 | 1.88E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene66047 | MS.gene24260 | PPI |
| MS.gene66047 | MS.gene56166 | PPI |
| MS.gene66047 | MS.gene053148 | PPI |
| MS.gene66047 | MS.gene034157 | PPI |
| MS.gene66047 | MS.gene054580 | PPI |
| MS.gene66047 | MS.gene034156 | PPI |
| MS.gene66047 | MS.gene55098 | PPI |
| MS.gene66047 | MS.gene037074 | PPI |
| MS.gene66047 | MS.gene26979 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66047.t1 | MTR_7g059170 | 98.780 | 246 | 3 | 0 | 1 | 246 | 1 | 246 | 0.0 | 496 |
| MS.gene66047.t1 | MTR_4g008160 | 47.234 | 235 | 123 | 1 | 13 | 246 | 9 | 243 | 8.74e-74 | 224 |
| MS.gene66047.t1 | MTR_1g022385 | 46.383 | 235 | 125 | 1 | 13 | 246 | 41 | 275 | 3.08e-72 | 222 |
| MS.gene66047.t1 | MTR_2g038250 | 45.344 | 247 | 131 | 2 | 1 | 246 | 1 | 244 | 1.34e-71 | 219 |
| MS.gene66047.t1 | MTR_3g029930 | 83.784 | 74 | 11 | 1 | 1 | 74 | 1 | 73 | 4.56e-34 | 117 |
| MS.gene66047.t1 | MTR_1g022375 | 48.684 | 76 | 39 | 0 | 161 | 236 | 81 | 156 | 7.79e-20 | 83.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66047.t1 | AT1G80750 | 51.613 | 248 | 117 | 3 | 1 | 246 | 1 | 247 | 2.23e-79 | 239 |
| MS.gene66047.t1 | AT2G01250 | 48.101 | 237 | 118 | 2 | 13 | 246 | 8 | 242 | 1.61e-73 | 224 |
| MS.gene66047.t1 | AT3G13580 | 46.383 | 235 | 125 | 1 | 13 | 246 | 10 | 244 | 1.78e-73 | 224 |
| MS.gene66047.t1 | AT3G13580 | 46.383 | 235 | 125 | 1 | 13 | 246 | 10 | 244 | 1.78e-73 | 224 |
| MS.gene66047.t1 | AT3G13580 | 46.383 | 235 | 125 | 1 | 13 | 246 | 10 | 244 | 1.78e-73 | 224 |
| MS.gene66047.t1 | AT3G13580 | 46.383 | 235 | 125 | 1 | 13 | 246 | 10 | 244 | 1.78e-73 | 224 |
| MS.gene66047.t1 | AT3G13580 | 46.383 | 235 | 125 | 1 | 13 | 246 | 10 | 244 | 1.78e-73 | 224 |
| MS.gene66047.t1 | AT3G13580 | 46.383 | 235 | 125 | 1 | 13 | 246 | 10 | 244 | 1.78e-73 | 224 |
| MS.gene66047.t1 | AT3G13580 | 46.383 | 235 | 125 | 1 | 13 | 246 | 10 | 244 | 1.78e-73 | 224 |
| MS.gene66047.t1 | AT3G13580 | 46.383 | 235 | 125 | 1 | 13 | 246 | 10 | 244 | 1.78e-73 | 224 |
| MS.gene66047.t1 | AT3G13580 | 46.383 | 235 | 125 | 1 | 13 | 246 | 10 | 244 | 1.78e-73 | 224 |
| MS.gene66047.t1 | AT2G44120 | 47.257 | 237 | 120 | 2 | 13 | 246 | 13 | 247 | 2.43e-73 | 224 |
| MS.gene66047.t1 | AT2G44120 | 47.257 | 237 | 120 | 2 | 13 | 246 | 8 | 242 | 2.50e-73 | 223 |
| MS.gene66047.t1 | AT2G01250 | 43.605 | 172 | 92 | 2 | 13 | 181 | 8 | 177 | 2.44e-38 | 132 |
Find 57 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAACTGAACAAGTGCTTTC+TGG | 0.154170 | 7.3:-45737159 | None:intergenic |
| CTGAATACGAATGACTATTA+TGG | 0.199323 | 7.3:-45737025 | None:intergenic |
| CTTGTAAATCAGCTCCTTTA+TGG | 0.209662 | 7.3:-45738205 | None:intergenic |
| TACAAGGATGGTGGAGATTC+AGG | 0.234481 | 7.3:+45738529 | MS.gene66047:CDS |
| CATAATAGTCATTCGTATTC+AGG | 0.240399 | 7.3:+45737026 | MS.gene66047:CDS |
| CAGAAAGCACTTGTTCAGTT+TGG | 0.268658 | 7.3:+45737160 | MS.gene66047:CDS |
| ACTATTATGGGCTTGTTCTT+TGG | 0.268791 | 7.3:-45737012 | None:intergenic |
| AAGCCAGCAGATGGATTAAA+AGG | 0.288400 | 7.3:+45738493 | MS.gene66047:CDS |
| CCCTTCGTTTCATTCTAATA+AGG | 0.310268 | 7.3:-45736960 | None:intergenic |
| TTGTAGGAATTGGGAAAGTT+TGG | 0.312133 | 7.3:+45738376 | MS.gene66047:intron |
| GGAATATAGTTGAGATCCTT+TGG | 0.341292 | 7.3:-45736642 | None:intergenic |
| AGAAAGCACTTGTTCAGTTT+GGG | 0.353399 | 7.3:+45737161 | MS.gene66047:CDS |
| TGCTGGCTTGTTCAGTTCAA+AGG | 0.380601 | 7.3:-45738479 | None:intergenic |
| TGAATACGAATGACTATTAT+GGG | 0.384437 | 7.3:-45737024 | None:intergenic |
| CTCTTCTTCAATATAACCTC+AGG | 0.413339 | 7.3:-45736663 | None:intergenic |
| TGCAAATCTTAAAACCATAA+AGG | 0.425498 | 7.3:+45738191 | MS.gene66047:CDS |
| GTTCAAAGGGCCACATAAAT+CGG | 0.432282 | 7.3:-45738465 | None:intergenic |
| AGCATGGGCCTTGAGTAAAA+AGG | 0.451851 | 7.3:+45736698 | MS.gene66047:CDS |
| GTTGAACCATATGTCACCTA+TGG | 0.470090 | 7.3:+45737251 | MS.gene66047:CDS |
| CAATGTTGGTCCACACTTCA+AGG | 0.470139 | 7.3:+45738435 | MS.gene66047:CDS |
| GCTGGCTTGTTCAGTTCAAA+GGG | 0.484099 | 7.3:-45738478 | None:intergenic |
| ATAATAGTCATTCGTATTCA+GGG | 0.488242 | 7.3:+45737027 | MS.gene66047:CDS |
| GCTTACCCATAGGTGACATA+TGG | 0.491527 | 7.3:-45737257 | None:intergenic |
| ACGAAGGGTCAAGTGGAGAC+GGG | 0.493528 | 7.3:+45736975 | MS.gene66047:CDS |
| TTGGCCATCACTCCATCAGT+TGG | 0.498511 | 7.3:-45737218 | None:intergenic |
| GTCTTTGTGAAGCCAACTGA+TGG | 0.503340 | 7.3:+45737206 | MS.gene66047:CDS |
| AGAGGAAACACAGCGAAGCA+TGG | 0.507603 | 7.3:+45736682 | MS.gene66047:CDS |
| ACAAGGATGGTGGAGATTCA+GGG | 0.513757 | 7.3:+45738530 | MS.gene66047:CDS |
| AGACAATAATCTTATTGAGC+AGG | 0.517657 | 7.3:+45738269 | MS.gene66047:CDS |
| CTGAGGTTATATTGAAGAAG+AGG | 0.519905 | 7.3:+45736664 | MS.gene66047:CDS |
| AGGAAGTTGTCCGATTTATG+TGG | 0.520802 | 7.3:+45738455 | MS.gene66047:CDS |
| AAAGGAGCTGATTTACAAGA+AGG | 0.528892 | 7.3:+45738209 | MS.gene66047:CDS |
| ACTTGAAAAGATGGCTGAAG+AGG | 0.529766 | 7.3:+45736614 | None:intergenic |
| AACGAAGGGTCAAGTGGAGA+CGG | 0.529927 | 7.3:+45736974 | MS.gene66047:CDS |
| AATCTCCACCATCCTTGTAT+CGG | 0.534716 | 7.3:-45738525 | None:intergenic |
| TGATGGAGTGATGGCCAAGC+TGG | 0.538270 | 7.3:+45737223 | MS.gene66047:CDS |
| AGTCCTTGGACTTCCTGAGC+TGG | 0.543154 | 7.3:-45736743 | None:intergenic |
| GAGGAAACACAGCGAAGCAT+GGG | 0.549509 | 7.3:+45736683 | MS.gene66047:CDS |
| ATAAGATTATTGTCTGTCAA+AGG | 0.552916 | 7.3:-45738261 | None:intergenic |
| GAACTGAACAAGCCAGCAGA+TGG | 0.558045 | 7.3:+45738484 | MS.gene66047:CDS |
| GTGCATCAAATTGACAATGT+TGG | 0.571611 | 7.3:+45738421 | MS.gene66047:CDS |
| CGAAGGGTCAAGTGGAGACG+GGG | 0.582255 | 7.3:+45736976 | MS.gene66047:CDS |
| TGGTTCAACTCTCGCCAGCT+TGG | 0.586026 | 7.3:-45737237 | None:intergenic |
| GGCTGAAGAGGAACAACCAA+AGG | 0.590481 | 7.3:+45736626 | MS.gene66047:CDS |
| TTGAACCATATGTCACCTAT+GGG | 0.596680 | 7.3:+45737252 | MS.gene66047:CDS |
| AAGGAGCTGATTTACAAGAA+GGG | 0.608163 | 7.3:+45738210 | MS.gene66047:CDS |
| GAATGAAACGAAGGGTCAAG+TGG | 0.608473 | 7.3:+45736968 | MS.gene66047:CDS |
| CGGACAACTTCCTTGAAGTG+TGG | 0.624573 | 7.3:-45738445 | None:intergenic |
| ACCTTATTAGAATGAAACGA+AGG | 0.629621 | 7.3:+45736959 | MS.gene66047:CDS |
| TTTCCAGCTCAGGAAGTCCA+AGG | 0.632786 | 7.3:+45736740 | MS.gene66047:CDS |
| CAAGGATGGTGGAGATTCAG+GGG | 0.643297 | 7.3:+45738531 | MS.gene66047:CDS |
| CCTTATTAGAATGAAACGAA+GGG | 0.647440 | 7.3:+45736960 | MS.gene66047:CDS |
| GAAGCCAACTGATGGAGTGA+TGG | 0.656585 | 7.3:+45737214 | MS.gene66047:CDS |
| TAATAGTCATTCGTATTCAG+GGG | 0.663363 | 7.3:+45737028 | MS.gene66047:CDS |
| GGATCTCAACTATATTCCTG+AGG | 0.677649 | 7.3:+45736647 | MS.gene66047:CDS |
| GCTCATTGATGAGATCCTCA+CGG | 0.701499 | 7.3:-45738555 | None:intergenic |
| TGGAGATTCAGGGGACCGTG+AGG | 0.708623 | 7.3:+45738540 | MS.gene66047:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATAACAAAATAAAAGGA+GGG | - | chr7.3:45736835-45736854 | None:intergenic | 15.0% |
| !! | AGTGAATATAACAAAATAAA+AGG | - | chr7.3:45736839-45736858 | None:intergenic | 15.0% |
| !!! | AACCAATTTTTATAATAAAG+TGG | - | chr7.3:45738063-45738082 | None:intergenic | 15.0% |
| !!! | TACTATCTATAAATACTTTT+TGG | + | chr7.3:45737785-45737804 | MS.gene66047:intron | 15.0% |
| !!! | TTTATGAAGTTTTTTTGAAA+AGG | - | chr7.3:45737742-45737761 | None:intergenic | 15.0% |
| !! | AAAACTTCATAAATTGTTTG+TGG | + | chr7.3:45737749-45737768 | MS.gene66047:intron | 20.0% |
| !! | AATTTATGAAGTTAACTTTC+TGG | - | chr7.3:45737716-45737735 | None:intergenic | 20.0% |
| !! | ATATTCAAAAATGAAATCCT+CGG | - | chr7.3:45736781-45736800 | None:intergenic | 20.0% |
| !! | ATTGGAATAAATTTAGTTAC+AGG | - | chr7.3:45737662-45737681 | None:intergenic | 20.0% |
| !! | CACCACTTTATTATAAAAAT+TGG | + | chr7.3:45738058-45738077 | MS.gene66047:intron | 20.0% |
| !! | GAATATAACAAAATAAAAGG+AGG | - | chr7.3:45736836-45736855 | None:intergenic | 20.0% |
| !!! | AAACACTATTTTTAGGTTAA+AGG | + | chr7.3:45737589-45737608 | MS.gene66047:intron | 20.0% |
| !!! | AAACAGATTTTCACAAAATT+AGG | - | chr7.3:45738159-45738178 | None:intergenic | 20.0% |
| !!! | AACACTATTTTTAGGTTAAA+GGG | + | chr7.3:45737590-45737609 | MS.gene66047:intron | 20.0% |
| !!! | TTGAACTTTCATATAGTTTT+AGG | + | chr7.3:45737401-45737420 | MS.gene66047:intron | 20.0% |
| !!! | TTTTTGGTTTAGAATATTCA+CGG | + | chr7.3:45737801-45737820 | MS.gene66047:intron | 20.0% |
| ! | AAATATGTTATGACTGTACA+GGG | - | chr7.3:45737094-45737113 | None:intergenic | 25.0% |
| ! | ATAAGATTATTGTCTGTCAA+AGG | - | chr7.3:45738264-45738283 | None:intergenic | 25.0% |
| ! | ATAATAGTCATTCGTATTCA+GGG | + | chr7.3:45737027-45737046 | MS.gene66047:CDS | 25.0% |
| ! | GAACTTTCATATAGTTAGAA+GGG | + | chr7.3:45737337-45737356 | MS.gene66047:intron | 25.0% |
| ! | GACAAAAAATCAAAACATCA+AGG | - | chr7.3:45737072-45737091 | None:intergenic | 25.0% |
| ! | TATTCAAAAATGAAATCCTC+GGG | - | chr7.3:45736780-45736799 | None:intergenic | 25.0% |
| ! | TGAACTTTCATATAGTTAGA+AGG | + | chr7.3:45737336-45737355 | MS.gene66047:intron | 25.0% |
| ! | TGAATACGAATGACTATTAT+GGG | - | chr7.3:45737027-45737046 | None:intergenic | 25.0% |
| ! | TGCAAATCTTAAAACCATAA+AGG | + | chr7.3:45738191-45738210 | MS.gene66047:CDS | 25.0% |
| ! | TTGTTGAACTTTCATATAGT+TGG | + | chr7.3:45737365-45737384 | MS.gene66047:intron | 25.0% |
| AAACCGATATATTTCTCGAT+TGG | + | chr7.3:45737565-45737584 | MS.gene66047:intron | 30.0% | |
| ACAAAAACAATTCAGTGAGT+GGG | - | chr7.3:45738337-45738356 | None:intergenic | 30.0% | |
| ACACTATTTAGTACAGATAG+AGG | + | chr7.3:45737510-45737529 | MS.gene66047:intron | 30.0% | |
| ACCTTATTAGAATGAAACGA+AGG | + | chr7.3:45736959-45736978 | MS.gene66047:CDS | 30.0% | |
| AGACAATAATCTTATTGAGC+AGG | + | chr7.3:45738269-45738288 | MS.gene66047:CDS | 30.0% | |
| CACTACTATTAGTACACATA+AGG | - | chr7.3:45737906-45737925 | None:intergenic | 30.0% | |
| CATAATAGTCATTCGTATTC+AGG | + | chr7.3:45737026-45737045 | MS.gene66047:CDS | 30.0% | |
| CCTTATTAGAATGAAACGAA+GGG | + | chr7.3:45736960-45736979 | MS.gene66047:CDS | 30.0% | |
| CTCTACTATTAGTACACATA+AGG | - | chr7.3:45737972-45737991 | None:intergenic | 30.0% | |
| CTGAATACGAATGACTATTA+TGG | - | chr7.3:45737028-45737047 | None:intergenic | 30.0% | |
| GAAATATGTTATGACTGTAC+AGG | - | chr7.3:45737095-45737114 | None:intergenic | 30.0% | |
| GAACTTTCATATAGTTGGAA+GGG | + | chr7.3:45737370-45737389 | MS.gene66047:intron | 30.0% | |
| TAATAGTCATTCGTATTCAG+GGG | + | chr7.3:45737028-45737047 | MS.gene66047:CDS | 30.0% | |
| TACAAAAACAATTCAGTGAG+TGG | - | chr7.3:45738338-45738357 | None:intergenic | 30.0% | |
| TATGTAAAGTAGTGCACATA+TGG | + | chr7.3:45738028-45738047 | MS.gene66047:intron | 30.0% | |
| TGAACTTTCATATAGTTGGA+AGG | + | chr7.3:45737369-45737388 | MS.gene66047:intron | 30.0% | |
| TTAGAATATTCACGGAAGAT+TGG | + | chr7.3:45737809-45737828 | MS.gene66047:intron | 30.0% | |
| TTGCCAATCGAGAAATATAT+CGG | - | chr7.3:45737571-45737590 | None:intergenic | 30.0% | |
| ! | CATTTTTGAATATCGCAACA+GGG | + | chr7.3:45736788-45736807 | MS.gene66047:CDS | 30.0% |
| !! | CTTTTGCTCTATTTGCTTTT+AGG | + | chr7.3:45737114-45737133 | MS.gene66047:intron | 30.0% |
| !! | GATTGGCAAACACTATTTTT+AGG | + | chr7.3:45737582-45737601 | MS.gene66047:intron | 30.0% |
| !! | TCATTTTTGAATATCGCAAC+AGG | + | chr7.3:45736787-45736806 | MS.gene66047:CDS | 30.0% |
| !!! | ACTTTTTGACTTGTAGGAAT+TGG | + | chr7.3:45738366-45738385 | MS.gene66047:intron | 30.0% |
| !!! | CTTTTTGACTTGTAGGAATT+GGG | + | chr7.3:45738367-45738386 | MS.gene66047:intron | 30.0% |
| !!! | TGTTTCACTTTTTGACTTGT+AGG | + | chr7.3:45738360-45738379 | MS.gene66047:intron | 30.0% |
| AGAAAAAAAGTTTCCAGCTC+AGG | + | chr7.3:45736730-45736749 | MS.gene66047:CDS | 35.0% | |
| AGGATTGAAAAACCGATACA+AGG | + | chr7.3:45738513-45738532 | MS.gene66047:CDS | 35.0% | |
| ATCCTCAGCAAACTGAAATT+TGG | - | chr7.3:45738132-45738151 | None:intergenic | 35.0% | |
| CAAAGGAAAACTAGGAATCT+AGG | - | chr7.3:45738313-45738332 | None:intergenic | 35.0% | |
| CCCTTCGTTTCATTCTAATA+AGG | - | chr7.3:45736963-45736982 | None:intergenic | 35.0% | |
| CTCTTCTTCAATATAACCTC+AGG | - | chr7.3:45736666-45736685 | None:intergenic | 35.0% | |
| CTGAGGTTATATTGAAGAAG+AGG | + | chr7.3:45736664-45736683 | MS.gene66047:CDS | 35.0% | |
| CTTGTAAATCAGCTCCTTTA+TGG | - | chr7.3:45738208-45738227 | None:intergenic | 35.0% | |
| GGAATATAGTTGAGATCCTT+TGG | - | chr7.3:45736645-45736664 | None:intergenic | 35.0% | |
| GTGCATCAAATTGACAATGT+TGG | + | chr7.3:45738421-45738440 | MS.gene66047:CDS | 35.0% | |
| TCCTCAGCAAACTGAAATTT+GGG | - | chr7.3:45738131-45738150 | None:intergenic | 35.0% | |
| TTAACTTTCTGGACAGAAGA+AGG | - | chr7.3:45737705-45737724 | None:intergenic | 35.0% | |
| TTGAAAAACCGATACAAGGA+TGG | + | chr7.3:45738517-45738536 | MS.gene66047:CDS | 35.0% | |
| TTGAACCATATGTCACCTAT+GGG | + | chr7.3:45737252-45737271 | MS.gene66047:CDS | 35.0% | |
| TTGAGCAGGTAATACATACA+TGG | + | chr7.3:45738283-45738302 | MS.gene66047:intron | 35.0% | |
| TTGTAGGAATTGGGAAAGTT+TGG | + | chr7.3:45738376-45738395 | MS.gene66047:intron | 35.0% | |
| ! | AAAGGAGCTGATTTACAAGA+AGG | + | chr7.3:45738209-45738228 | MS.gene66047:CDS | 35.0% |
| ! | AAGGAGCTGATTTACAAGAA+GGG | + | chr7.3:45738210-45738229 | MS.gene66047:CDS | 35.0% |
| ! | AATCCTTTTAATCCATCTGC+TGG | - | chr7.3:45738499-45738518 | None:intergenic | 35.0% |
| ! | ACTATTATGGGCTTGTTCTT+TGG | - | chr7.3:45737015-45737034 | None:intergenic | 35.0% |
| !! | AGAAAGCACTTGTTCAGTTT+GGG | + | chr7.3:45737161-45737180 | MS.gene66047:CDS | 35.0% |
| !!! | TGAGCTGGAAACTTTTTTTC+TGG | - | chr7.3:45736731-45736750 | None:intergenic | 35.0% |
| AAAAACCGATACAAGGATGG+TGG | + | chr7.3:45738520-45738539 | MS.gene66047:CDS | 40.0% | |
| AATCTCCACCATCCTTGTAT+CGG | - | chr7.3:45738528-45738547 | None:intergenic | 40.0% | |
| ACTATTGTGCTATAGCGTAG+AGG | + | chr7.3:45737457-45737476 | MS.gene66047:intron | 40.0% | |
| AGGAAGTTGTCCGATTTATG+TGG | + | chr7.3:45738455-45738474 | MS.gene66047:CDS | 40.0% | |
| ATAGTTGCTGATGCATCATG+TGG | - | chr7.3:45737943-45737962 | None:intergenic | 40.0% | |
| ATGACTTCTATCACTTGTGC+AGG | + | chr7.3:45736930-45736949 | MS.gene66047:intron | 40.0% | |
| CAAACTGAACAAGTGCTTTC+TGG | - | chr7.3:45737162-45737181 | None:intergenic | 40.0% | |
| CACAGGAAAGTAAAGATGCA+AGG | - | chr7.3:45738095-45738114 | None:intergenic | 40.0% | |
| CAGATGCTTGCAACTATGTT+AGG | + | chr7.3:45737864-45737883 | MS.gene66047:intron | 40.0% | |
| CCTCAGCAAACTGAAATTTG+GGG | - | chr7.3:45738130-45738149 | None:intergenic | 40.0% | |
| GCTTGCAACTATGTTAGGAA+AGG | + | chr7.3:45737869-45737888 | MS.gene66047:intron | 40.0% | |
| GGATCTCAACTATATTCCTG+AGG | + | chr7.3:45736647-45736666 | MS.gene66047:CDS | 40.0% | |
| GTTCAAAGGGCCACATAAAT+CGG | - | chr7.3:45738468-45738487 | None:intergenic | 40.0% | |
| GTTGAACCATATGTCACCTA+TGG | + | chr7.3:45737251-45737270 | MS.gene66047:CDS | 40.0% | |
| TAGTTGCTGATGCATCATGT+GGG | - | chr7.3:45737942-45737961 | None:intergenic | 40.0% | |
| TCAATCTATCGCTTACCCAT+AGG | - | chr7.3:45737270-45737289 | None:intergenic | 40.0% | |
| TGGGGATAATGCATATACAC+AGG | - | chr7.3:45738112-45738131 | None:intergenic | 40.0% | |
| ! | GATTGGTTACTTGGAGATCA+AGG | + | chr7.3:45737826-45737845 | MS.gene66047:intron | 40.0% |
| ! | TTCACGGAAGATTGGTTACT+TGG | + | chr7.3:45737817-45737836 | MS.gene66047:intron | 40.0% |
| !! | AAGCCAGCAGATGGATTAAA+AGG | + | chr7.3:45738493-45738512 | MS.gene66047:CDS | 40.0% |
| !! | CAGAAAGCACTTGTTCAGTT+TGG | + | chr7.3:45737160-45737179 | MS.gene66047:CDS | 40.0% |
| !!! | GGGCTTTTTTATGAAGTCCT+TGG | - | chr7.3:45736760-45736779 | None:intergenic | 40.0% |
| AGCATGGGCCTTGAGTAAAA+AGG | + | chr7.3:45736698-45736717 | MS.gene66047:CDS | 45.0% | |
| CAATGTTGGTCCACACTTCA+AGG | + | chr7.3:45738435-45738454 | MS.gene66047:CDS | 45.0% | |
| CAATTCAGTGAGTGGGTCAA+AGG | - | chr7.3:45738330-45738349 | None:intergenic | 45.0% | |
| GAATGAAACGAAGGGTCAAG+TGG | + | chr7.3:45736968-45736987 | MS.gene66047:CDS | 45.0% | |
| GAGTGGGTCAAAGGAAAACT+AGG | - | chr7.3:45738321-45738340 | None:intergenic | 45.0% | |
| GCATCATGTGTGACATGCAT+AGG | - | chr7.3:45737931-45737950 | None:intergenic | 45.0% | |
| GCTCATTGATGAGATCCTCA+CGG | - | chr7.3:45738558-45738577 | None:intergenic | 45.0% | |
| GCTTACCCATAGGTGACATA+TGG | - | chr7.3:45737260-45737279 | None:intergenic | 45.0% | |
| GGACAGAAGAAGGATATGAG+AGG | - | chr7.3:45737695-45737714 | None:intergenic | 45.0% | |
| GGACTTCATAAAAAAGCCCG+AGG | + | chr7.3:45736761-45736780 | MS.gene66047:CDS | 45.0% | |
| GTCTTTGTGAAGCCAACTGA+TGG | + | chr7.3:45737206-45737225 | MS.gene66047:CDS | 45.0% | |
| ! | ATGAGAGGCAGCTAGTCTAT+TGG | - | chr7.3:45737680-45737699 | None:intergenic | 45.0% |
| ! | GAGTTGCGCCTTTTTACTCA+AGG | - | chr7.3:45736709-45736728 | None:intergenic | 45.0% |
| !! | ACAAGGATGGTGGAGATTCA+GGG | + | chr7.3:45738530-45738549 | MS.gene66047:CDS | 45.0% |
| !! | ATAGAGGCACTATAGCTGTG+TGG | + | chr7.3:45737526-45737545 | MS.gene66047:intron | 45.0% |
| !! | CCCCAAATTTCAGTTTGCTG+AGG | + | chr7.3:45738127-45738146 | MS.gene66047:intron | 45.0% |
| !! | GCTGGCTTGTTCAGTTCAAA+GGG | - | chr7.3:45738481-45738500 | None:intergenic | 45.0% |
| !! | TACAAGGATGGTGGAGATTC+AGG | + | chr7.3:45738529-45738548 | MS.gene66047:CDS | 45.0% |
| !! | TAGAGGCACTATAGCTGTGT+GGG | + | chr7.3:45737527-45737546 | MS.gene66047:intron | 45.0% |
| !! | TGCTGGCTTGTTCAGTTCAA+AGG | - | chr7.3:45738482-45738501 | None:intergenic | 45.0% |
| AACGAAGGGTCAAGTGGAGA+CGG | + | chr7.3:45736974-45736993 | MS.gene66047:CDS | 50.0% | |
| AGAGGAAACACAGCGAAGCA+TGG | + | chr7.3:45736682-45736701 | MS.gene66047:CDS | 50.0% | |
| CGGACAACTTCCTTGAAGTG+TGG | - | chr7.3:45738448-45738467 | None:intergenic | 50.0% | |
| GAACTGAACAAGCCAGCAGA+TGG | + | chr7.3:45738484-45738503 | MS.gene66047:CDS | 50.0% | |
| GAAGCCAACTGATGGAGTGA+TGG | + | chr7.3:45737214-45737233 | MS.gene66047:CDS | 50.0% | |
| GAGGAAACACAGCGAAGCAT+GGG | + | chr7.3:45736683-45736702 | MS.gene66047:CDS | 50.0% | |
| GCATCATGTGGGACATGCAT+AGG | - | chr7.3:45737999-45738018 | None:intergenic | 50.0% | |
| GGCTGAAGAGGAACAACCAA+AGG | + | chr7.3:45736626-45736645 | MS.gene66047:CDS | 50.0% | |
| TTGGCCATCACTCCATCAGT+TGG | - | chr7.3:45737221-45737240 | None:intergenic | 50.0% | |
| TTTCCAGCTCAGGAAGTCCA+AGG | + | chr7.3:45736740-45736759 | MS.gene66047:CDS | 50.0% | |
| !! | CAAGGATGGTGGAGATTCAG+GGG | + | chr7.3:45738531-45738550 | MS.gene66047:CDS | 50.0% |
| ACGAAGGGTCAAGTGGAGAC+GGG | + | chr7.3:45736975-45736994 | MS.gene66047:CDS | 55.0% | |
| AGTCCTTGGACTTCCTGAGC+TGG | - | chr7.3:45736746-45736765 | None:intergenic | 55.0% | |
| TGATGGAGTGATGGCCAAGC+TGG | + | chr7.3:45737223-45737242 | MS.gene66047:CDS | 55.0% | |
| TGGTTCAACTCTCGCCAGCT+TGG | - | chr7.3:45737240-45737259 | None:intergenic | 55.0% | |
| CGAAGGGTCAAGTGGAGACG+GGG | + | chr7.3:45736976-45736995 | MS.gene66047:CDS | 60.0% | |
| TGGAGATTCAGGGGACCGTG+AGG | + | chr7.3:45738540-45738559 | MS.gene66047:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 45736624 | 45738597 | 45736624 | ID=MS.gene66047 |
| chr7.3 | mRNA | 45736624 | 45738597 | 45736624 | ID=MS.gene66047.t1;Parent=MS.gene66047 |
| chr7.3 | exon | 45736624 | 45736809 | 45736624 | ID=MS.gene66047.t1.exon1;Parent=MS.gene66047.t1 |
| chr7.3 | CDS | 45736624 | 45736809 | 45736624 | ID=cds.MS.gene66047.t1;Parent=MS.gene66047.t1 |
| chr7.3 | exon | 45736952 | 45737049 | 45736952 | ID=MS.gene66047.t1.exon2;Parent=MS.gene66047.t1 |
| chr7.3 | CDS | 45736952 | 45737049 | 45736952 | ID=cds.MS.gene66047.t1;Parent=MS.gene66047.t1 |
| chr7.3 | exon | 45737136 | 45737273 | 45737136 | ID=MS.gene66047.t1.exon3;Parent=MS.gene66047.t1 |
| chr7.3 | CDS | 45737136 | 45737273 | 45737136 | ID=cds.MS.gene66047.t1;Parent=MS.gene66047.t1 |
| chr7.3 | exon | 45738188 | 45738290 | 45738188 | ID=MS.gene66047.t1.exon4;Parent=MS.gene66047.t1 |
| chr7.3 | CDS | 45738188 | 45738290 | 45738188 | ID=cds.MS.gene66047.t1;Parent=MS.gene66047.t1 |
| chr7.3 | exon | 45738382 | 45738597 | 45738382 | ID=MS.gene66047.t1.exon5;Parent=MS.gene66047.t1 |
| chr7.3 | CDS | 45738382 | 45738597 | 45738382 | ID=cds.MS.gene66047.t1;Parent=MS.gene66047.t1 |
| Gene Sequence |
| Protein sequence |
