Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053148.t1 | XP_013454579.1 | 98.4 | 243 | 4 | 0 | 1 | 243 | 1 | 243 | 5.70E-131 | 476.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053148.t1 | Q9LHP1 | 85.0 | 240 | 36 | 0 | 4 | 243 | 5 | 244 | 3.1e-117 | 422.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053148.t1 | A0A072URW1 | 98.4 | 243 | 4 | 0 | 1 | 243 | 1 | 243 | 4.1e-131 | 476.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051274 | MS.gene053148 | 0.807197 | 5.68E-50 | -1.69E-46 |
| MS.gene053148 | MS.gene056257 | 0.812345 | 4.44E-51 | -1.69E-46 |
| MS.gene053148 | MS.gene073092 | 0.803981 | 2.69E-49 | -1.69E-46 |
| MS.gene053148 | MS.gene07810 | 0.817166 | 3.80E-52 | -1.69E-46 |
| MS.gene053148 | MS.gene31177 | 0.806069 | 9.84E-50 | -1.69E-46 |
| MS.gene053148 | MS.gene45470 | 0.802551 | 5.32E-49 | -1.69E-46 |
| MS.gene053148 | MS.gene58448 | 0.801709 | 7.92E-49 | -1.69E-46 |
| MS.gene053148 | MS.gene77207 | 0.800638 | 1.31E-48 | -1.69E-46 |
| MS.gene053148 | MS.gene99744 | 0.815395 | 9.45E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene053148 | MS.gene022752 | PPI |
| MS.gene053148 | MS.gene81068 | PPI |
| MS.gene053148 | MS.gene08488 | PPI |
| MS.gene053148 | MS.gene55098 | PPI |
| MS.gene66047 | MS.gene053148 | PPI |
| MS.gene018553 | MS.gene053148 | PPI |
| MS.gene053148 | MS.gene037074 | PPI |
| MS.gene053148 | MS.gene77207 | PPI |
| MS.gene053148 | MS.gene034157 | PPI |
| MS.gene053148 | MS.gene64512 | PPI |
| MS.gene053148 | MS.gene020215 | PPI |
| MS.gene053148 | MS.gene26979 | PPI |
| MS.gene053148 | MS.gene78232 | PPI |
| MS.gene053148 | MS.gene24260 | PPI |
| MS.gene053148 | MS.gene56166 | PPI |
| MS.gene053148 | MS.gene061905 | PPI |
| MS.gene053148 | MS.gene65129 | PPI |
| MS.gene050985 | MS.gene053148 | PPI |
| MS.gene053148 | MS.gene39294 | PPI |
| MS.gene053148 | MS.gene054580 | PPI |
| MS.gene053148 | MS.gene45646 | PPI |
| MS.gene053148 | MS.gene034156 | PPI |
| MS.gene053148 | MS.gene25010 | PPI |
| MS.gene053148 | MS.gene09845 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053148.t1 | MTR_4g008160 | 98.354 | 243 | 4 | 0 | 1 | 243 | 1 | 243 | 1.05e-177 | 488 |
| MS.gene053148.t1 | MTR_1g022385 | 87.552 | 241 | 30 | 0 | 3 | 243 | 35 | 275 | 7.84e-159 | 441 |
| MS.gene053148.t1 | MTR_2g038250 | 86.722 | 241 | 32 | 0 | 3 | 243 | 4 | 244 | 8.85e-158 | 437 |
| MS.gene053148.t1 | MTR_7g059170 | 46.809 | 235 | 124 | 1 | 9 | 243 | 13 | 246 | 6.03e-74 | 225 |
| MS.gene053148.t1 | MTR_1g022375 | 62.745 | 102 | 38 | 0 | 132 | 233 | 55 | 156 | 7.04e-39 | 132 |
| MS.gene053148.t1 | MTR_1g108785 | 58.621 | 58 | 18 | 4 | 184 | 235 | 2 | 59 | 1.99e-12 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053148.t1 | AT3G13580 | 85.000 | 240 | 36 | 0 | 4 | 243 | 5 | 244 | 1.36e-155 | 432 |
| MS.gene053148.t1 | AT3G13580 | 85.000 | 240 | 36 | 0 | 4 | 243 | 5 | 244 | 1.36e-155 | 432 |
| MS.gene053148.t1 | AT3G13580 | 85.000 | 240 | 36 | 0 | 4 | 243 | 5 | 244 | 1.36e-155 | 432 |
| MS.gene053148.t1 | AT3G13580 | 85.000 | 240 | 36 | 0 | 4 | 243 | 5 | 244 | 1.36e-155 | 432 |
| MS.gene053148.t1 | AT3G13580 | 85.000 | 240 | 36 | 0 | 4 | 243 | 5 | 244 | 1.36e-155 | 432 |
| MS.gene053148.t1 | AT3G13580 | 85.000 | 240 | 36 | 0 | 4 | 243 | 5 | 244 | 1.36e-155 | 432 |
| MS.gene053148.t1 | AT3G13580 | 85.000 | 240 | 36 | 0 | 4 | 243 | 5 | 244 | 1.36e-155 | 432 |
| MS.gene053148.t1 | AT3G13580 | 85.000 | 240 | 36 | 0 | 4 | 243 | 5 | 244 | 1.36e-155 | 432 |
| MS.gene053148.t1 | AT3G13580 | 85.000 | 240 | 36 | 0 | 4 | 243 | 5 | 244 | 1.36e-155 | 432 |
| MS.gene053148.t1 | AT2G01250 | 85.833 | 240 | 34 | 0 | 4 | 243 | 3 | 242 | 1.09e-153 | 427 |
| MS.gene053148.t1 | AT2G44120 | 82.083 | 240 | 43 | 0 | 4 | 243 | 3 | 242 | 1.02e-147 | 412 |
| MS.gene053148.t1 | AT2G44120 | 82.083 | 240 | 43 | 0 | 4 | 243 | 8 | 247 | 1.37e-147 | 412 |
| MS.gene053148.t1 | AT2G01250 | 80.571 | 175 | 34 | 0 | 4 | 178 | 3 | 177 | 4.51e-98 | 284 |
| MS.gene053148.t1 | AT1G80750 | 42.623 | 244 | 137 | 2 | 3 | 243 | 4 | 247 | 4.52e-61 | 192 |
Find 59 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTTGCTTTGTTAACTTTA+AGG | 0.072962 | 4.2:-91695625 | None:intergenic |
| TCCCTTACACTCTTCAAATT+TGG | 0.097727 | 4.2:-91695779 | None:intergenic |
| GTTGAGCCTTATGTGACTTA+TGG | 0.277993 | 4.2:+91695665 | MS.gene053148:CDS |
| CCCTTACACTCTTCAAATTT+GGG | 0.292487 | 4.2:-91695778 | None:intergenic |
| TTGAGCCTTATGTGACTTAT+GGG | 0.362158 | 4.2:+91695666 | MS.gene053148:CDS |
| CTGTGTTGAAGAAGCAGAAC+AGG | 0.363263 | 4.2:+91694122 | MS.gene053148:CDS |
| CCTTTGGCCGTTCAAGCTTA+AGG | 0.366667 | 4.2:+91696056 | MS.gene053148:CDS |
| AGGAAGCAAACAACTTCCTT+TGG | 0.396409 | 4.2:+91696040 | MS.gene053148:CDS |
| GACTGTTGGACCACATTTCA+AGG | 0.408463 | 4.2:+91696020 | MS.gene053148:CDS |
| ACCCAAATTTGAAGAGTGTA+AGG | 0.411117 | 4.2:+91695777 | MS.gene053148:CDS |
| ATTACATCAATGAGCTCATC+AGG | 0.421060 | 4.2:+91696148 | MS.gene053148:CDS |
| CTCATCTACAAACGTGGGTA+TGG | 0.426956 | 4.2:+91695803 | MS.gene053148:CDS |
| TTTCCTTGTCTTGGGGTCCA+TGG | 0.427816 | 4.2:-91695336 | None:intergenic |
| GAGAACCGTAAGCTGATCTA+TGG | 0.446007 | 4.2:+91694205 | MS.gene053148:CDS |
| GTTCAAGCTTAAGGCTCCAT+TGG | 0.447908 | 4.2:+91696065 | MS.gene053148:CDS |
| TTCTCAAGAGTATGAGGATA+AGG | 0.453623 | 4.2:+91694243 | MS.gene053148:CDS |
| TATGTTGAAGGCGGTGATGC+TGG | 0.455644 | 4.2:+91696114 | MS.gene053148:CDS |
| CAGGGAAGAACAATGGGCTT+TGG | 0.464957 | 4.2:+91694141 | MS.gene053148:CDS |
| ACCGTAAGCTGATCTATGGC+AGG | 0.465539 | 4.2:+91694209 | MS.gene053148:CDS |
| GTGGGTATGGAAAGCTAGAC+AGG | 0.468462 | 4.2:+91695816 | MS.gene053148:CDS |
| TTCAAGCTTAAGGCTCCATT+GGG | 0.471133 | 4.2:+91696066 | MS.gene053148:CDS |
| GCAACTGTTTCGATTGAGAC+AGG | 0.474956 | 4.2:+91695364 | MS.gene053148:CDS |
| ATAAACAAGAGCTTGGCCTC+TGG | 0.475047 | 4.2:-91694457 | None:intergenic |
| GCAGAACAGGGAAGAACAAT+GGG | 0.492072 | 4.2:+91694135 | MS.gene053148:CDS |
| TGCTTCTTCAACACAGACTC+AGG | 0.496291 | 4.2:-91694115 | None:intergenic |
| GCGAATAATAAACAAGAGCT+TGG | 0.498068 | 4.2:-91694464 | None:intergenic |
| TTTGATGACCCTCAGGGACT+GGG | 0.500172 | 4.2:+91695952 | MS.gene053148:intron |
| GCAGTATTCTCAAGAGTATG+AGG | 0.504039 | 4.2:+91694237 | MS.gene053148:CDS |
| CCCTGCCATAGATCAGCTTA+CGG | 0.515436 | 4.2:-91694210 | None:intergenic |
| CAACAATGAACATGTTGCAC+AGG | 0.520606 | 4.2:+91695642 | MS.gene053148:CDS |
| AAGAGGAACCACTATGTTGA+AGG | 0.523907 | 4.2:+91696102 | MS.gene053148:CDS |
| AAGCTTAAGGCTCCATTGGG+TGG | 0.532905 | 4.2:+91696069 | MS.gene053148:CDS |
| ACATACCCATAAGTCACATA+AGG | 0.533172 | 4.2:-91695671 | None:intergenic |
| ATCCACGAGATCTTGACTGT+TGG | 0.544552 | 4.2:+91696006 | MS.gene053148:CDS |
| TTCTTCTTTAAGCCACCCAA+TGG | 0.546850 | 4.2:-91696081 | None:intergenic |
| TGACAACTCAATTATTGAGC+AGG | 0.556335 | 4.2:+91695856 | MS.gene053148:CDS |
| CCTCAGGGACTGGGAAAGCA+TGG | 0.559473 | 4.2:+91695961 | MS.gene053148:intron |
| TTGTTTATTATTCGCATACG+AGG | 0.561538 | 4.2:+91694472 | MS.gene053148:CDS |
| AGCAGAACAGGGAAGAACAA+TGG | 0.564767 | 4.2:+91694134 | MS.gene053148:CDS |
| TTGTTTGCTTCCTTGAAATG+TGG | 0.570988 | 4.2:-91696030 | None:intergenic |
| CGCGAGGCTAAGCTGAAAGG+TGG | 0.576946 | 4.2:+91694421 | MS.gene053148:CDS |
| GGATAAGATCTTCAATGCAT+AGG | 0.579833 | 4.2:-91695987 | None:intergenic |
| CCTTAAGCTTGAACGGCCAA+AGG | 0.585766 | 4.2:-91696056 | None:intergenic |
| AATGGAGCCTTAAGCTTGAA+CGG | 0.593439 | 4.2:-91696063 | None:intergenic |
| AAGCGCGAGGCTAAGCTGAA+AGG | 0.593449 | 4.2:+91694418 | MS.gene053148:CDS |
| GTCCAACAGTCAAGATCTCG+TGG | 0.596847 | 4.2:-91696008 | None:intergenic |
| CATCACCGCCTTCAACATAG+TGG | 0.607669 | 4.2:-91696110 | None:intergenic |
| ATAATTGAGTTGTCAGTGAG+AGG | 0.608273 | 4.2:-91695848 | None:intergenic |
| TGGGTGGCTTAAAGAAGAAG+AGG | 0.609725 | 4.2:+91696085 | MS.gene053148:CDS |
| CCCAAATTTGAAGAGTGTAA+GGG | 0.616996 | 4.2:+91695778 | MS.gene053148:CDS |
| GTTGATTAGTTTGAAGCGCG+AGG | 0.628393 | 4.2:+91694405 | MS.gene053148:CDS |
| ATGCCATGGACCCCAAGACA+AGG | 0.632973 | 4.2:+91695333 | MS.gene053148:CDS |
| TGTTTATTATTCGCATACGA+GGG | 0.637697 | 4.2:+91694473 | MS.gene053148:CDS |
| TGTGTTGAAGAAGCAGAACA+GGG | 0.649087 | 4.2:+91694123 | MS.gene053148:CDS |
| AACAATGAACATGTTGCACA+GGG | 0.654102 | 4.2:+91695643 | MS.gene053148:CDS |
| CCGTAAGCTGATCTATGGCA+GGG | 0.654899 | 4.2:+91694210 | MS.gene053148:CDS |
| AGGGAACTCATCTACAAACG+TGG | 0.682905 | 4.2:+91695797 | MS.gene053148:CDS |
| GGGAACTCATCTACAAACGT+GGG | 0.687591 | 4.2:+91695798 | MS.gene053148:CDS |
| AGGAACCACTATGTTGAAGG+CGG | 0.698307 | 4.2:+91696105 | MS.gene053148:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTCTTTACAAAATTTAATA+AGG | + | chr4.2:91694993-91695012 | MS.gene053148:intron | 15.0% |
| !! | TAACGAGTTTAATAGAAATA+TGG | + | chr4.2:91694834-91694853 | MS.gene053148:intron | 20.0% |
| !! | TGAAAAATCAATCAATAGTA+AGG | - | chr4.2:91695307-91695326 | None:intergenic | 20.0% |
| !!! | GGTTTTGTTTTTTATTTTGT+AGG | + | chr4.2:91694375-91694394 | MS.gene053148:intron | 20.0% |
| ! | AAGCCTAACAAATTTAAATG+AGG | - | chr4.2:91695421-91695440 | None:intergenic | 25.0% |
| ! | AGTACTTATAGTAGAAAAGA+CGG | + | chr4.2:91694657-91694676 | MS.gene053148:intron | 25.0% |
| ! | ATCTCTTGATCTTTCTTAAT+AGG | - | chr4.2:91694814-91694833 | None:intergenic | 25.0% |
| ! | CACTTAATTCAATTTCATGT+TGG | - | chr4.2:91694559-91694578 | None:intergenic | 25.0% |
| ! | TGGTATTTGATAGAATAGTA+TGG | + | chr4.2:91694854-91694873 | MS.gene053148:intron | 25.0% |
| ! | TTCTAAACAATAAGAGAAAC+TGG | - | chr4.2:91695144-91695163 | None:intergenic | 25.0% |
| !! | TCACCTCATTTAAATTTGTT+AGG | + | chr4.2:91695415-91695434 | MS.gene053148:intron | 25.0% |
| !! | TTCTTCTTCTATAAGTGTTT+TGG | + | chr4.2:91695234-91695253 | MS.gene053148:intron | 25.0% |
| !!! | ATTTTTCAGTATTAATGCCA+TGG | + | chr4.2:91695319-91695338 | MS.gene053148:intron | 25.0% |
| !!! | CTTTCTTCGTATTGATTTAA+AGG | + | chr4.2:91695701-91695720 | MS.gene053148:intron | 25.0% |
| !!! | GTTTGGTTTTTTTAGTTGTT+CGG | + | chr4.2:91694293-91694312 | MS.gene053148:intron | 25.0% |
| !!! | TTGTTGCTTTGTTAACTTTA+AGG | - | chr4.2:91695628-91695647 | None:intergenic | 25.0% |
| AAAACATCTAAGAAGACAAC+TGG | - | chr4.2:91695271-91695290 | None:intergenic | 30.0% | |
| AAACATCTAAGAAGACAACT+GGG | - | chr4.2:91695270-91695289 | None:intergenic | 30.0% | |
| AATTAAGTGTAGTAGAGATG+AGG | + | chr4.2:91694570-91694589 | MS.gene053148:intron | 30.0% | |
| ATGAATCATAGACTTCTCAA+AGG | - | chr4.2:91695503-91695522 | None:intergenic | 30.0% | |
| GAAACTAGACTTATGTGATT+TGG | + | chr4.2:91694682-91694701 | MS.gene053148:intron | 30.0% | |
| TGAAACAATTGAGACGTAAA+TGG | + | chr4.2:91695064-91695083 | MS.gene053148:intron | 30.0% | |
| TGTTTATTATTCGCATACGA+GGG | + | chr4.2:91694473-91694492 | MS.gene053148:CDS | 30.0% | |
| TTGTTTATTATTCGCATACG+AGG | + | chr4.2:91694472-91694491 | MS.gene053148:CDS | 30.0% | |
| TTGTTTGTATAAGAGCAGTT+TGG | + | chr4.2:91695560-91695579 | MS.gene053148:intron | 30.0% | |
| ! | AGTTGTCTTCTTAGATGTTT+TGG | + | chr4.2:91695270-91695289 | MS.gene053148:intron | 30.0% |
| ! | ATTTTCCTTCAACACTCAAA+AGG | + | chr4.2:91695734-91695753 | MS.gene053148:intron | 30.0% |
| ! | GCTCATTGATGTAATTTTCA+CGG | - | chr4.2:91696143-91696162 | None:intergenic | 30.0% |
| ! | GTTTTTGATGAAGTTATACG+AGG | + | chr4.2:91695034-91695053 | MS.gene053148:intron | 30.0% |
| ! | TGCAAAATTTTCCTTGTCTT+GGG | - | chr4.2:91695347-91695366 | None:intergenic | 30.0% |
| ! | TTGCAAAATTTTCCTTGTCT+TGG | - | chr4.2:91695348-91695367 | None:intergenic | 30.0% |
| ! | TTTGCTCAACAGATTTTCAA+TGG | + | chr4.2:91695596-91695615 | MS.gene053148:intron | 30.0% |
| !!! | ATTTTAGAGCAACTGTATAC+TGG | + | chr4.2:91695531-91695550 | MS.gene053148:intron | 30.0% |
| !!! | TGTTTTGTGTTGATTCAGAT+TGG | + | chr4.2:91694508-91694527 | MS.gene053148:intron | 30.0% |
| AACAATGAACATGTTGCACA+GGG | + | chr4.2:91695643-91695662 | MS.gene053148:CDS | 35.0% | |
| AACATTAGACTAGAGAGAGT+TGG | + | chr4.2:91694630-91694649 | MS.gene053148:intron | 35.0% | |
| ACATACCCATAAGTCACATA+AGG | - | chr4.2:91695674-91695693 | None:intergenic | 35.0% | |
| ACATTAGACTAGAGAGAGTT+GGG | + | chr4.2:91694631-91694650 | MS.gene053148:intron | 35.0% | |
| ACTTATAGTAGAAAAGACGG+TGG | + | chr4.2:91694660-91694679 | MS.gene053148:intron | 35.0% | |
| AGTCAAATCACTAGATGTAG+AGG | + | chr4.2:91694763-91694782 | MS.gene053148:intron | 35.0% | |
| ATCTGTTGAGCAAACACATA+AGG | - | chr4.2:91695590-91695609 | None:intergenic | 35.0% | |
| ATTACATCAATGAGCTCATC+AGG | + | chr4.2:91696148-91696167 | MS.gene053148:CDS | 35.0% | |
| CCCTTACACTCTTCAAATTT+GGG | - | chr4.2:91695781-91695800 | None:intergenic | 35.0% | |
| CGGATTTATAGTGATAGTTC+TGG | + | chr4.2:91694313-91694332 | MS.gene053148:intron | 35.0% | |
| GCGAATAATAAACAAGAGCT+TGG | - | chr4.2:91694467-91694486 | None:intergenic | 35.0% | |
| GGATAAGATCTTCAATGCAT+AGG | - | chr4.2:91695990-91696009 | None:intergenic | 35.0% | |
| TCCCTTACACTCTTCAAATT+TGG | - | chr4.2:91695782-91695801 | None:intergenic | 35.0% | |
| TCTAATCCAATCTGAATCGA+CGG | - | chr4.2:91694944-91694963 | None:intergenic | 35.0% | |
| TGACAACTCAATTATTGAGC+AGG | + | chr4.2:91695856-91695875 | MS.gene053148:CDS | 35.0% | |
| TTGTTTGCTTCCTTGAAATG+TGG | - | chr4.2:91696033-91696052 | None:intergenic | 35.0% | |
| ! | ACCCAAATTTGAAGAGTGTA+AGG | + | chr4.2:91695777-91695796 | MS.gene053148:CDS | 35.0% |
| ! | ATAATTGAGTTGTCAGTGAG+AGG | - | chr4.2:91695851-91695870 | None:intergenic | 35.0% |
| ! | CCCAAATTTGAAGAGTGTAA+GGG | + | chr4.2:91695778-91695797 | MS.gene053148:CDS | 35.0% |
| ! | GCAAAATTTTCCTTGTCTTG+GGG | - | chr4.2:91695346-91695365 | None:intergenic | 35.0% |
| ! | TCAGATTGGATTAGAGTGTT+AGG | + | chr4.2:91694522-91694541 | MS.gene053148:intron | 35.0% |
| ! | TGGATTTTATGTTGATCCAG+AGG | + | chr4.2:91694441-91694460 | MS.gene053148:CDS | 35.0% |
| ! | TTCTCAAGAGTATGAGGATA+AGG | + | chr4.2:91694243-91694262 | MS.gene053148:CDS | 35.0% |
| ! | TTGAGCCTTATGTGACTTAT+GGG | + | chr4.2:91695666-91695685 | MS.gene053148:CDS | 35.0% |
| AAGAGGAACCACTATGTTGA+AGG | + | chr4.2:91696102-91696121 | MS.gene053148:CDS | 40.0% | |
| AATGGAGCCTTAAGCTTGAA+CGG | - | chr4.2:91696066-91696085 | None:intergenic | 40.0% | |
| AGGAAGCAAACAACTTCCTT+TGG | + | chr4.2:91696040-91696059 | MS.gene053148:CDS | 40.0% | |
| AGGAGAGTAGATTAGACAAC+AGG | + | chr4.2:91694739-91694758 | MS.gene053148:intron | 40.0% | |
| ATTAGACTAGAGAGAGTTGG+GGG | + | chr4.2:91694633-91694652 | MS.gene053148:intron | 40.0% | |
| CAACAATGAACATGTTGCAC+AGG | + | chr4.2:91695642-91695661 | MS.gene053148:CDS | 40.0% | |
| CATTAGACTAGAGAGAGTTG+GGG | + | chr4.2:91694632-91694651 | MS.gene053148:intron | 40.0% | |
| CTCACTAATCAGTTGTGTTG+TGG | + | chr4.2:91694354-91694373 | MS.gene053148:intron | 40.0% | |
| CTTATCCCACTAAGTGAGAT+CGG | - | chr4.2:91694899-91694918 | None:intergenic | 40.0% | |
| GGAGAGTAGATTAGACAACA+GGG | + | chr4.2:91694740-91694759 | MS.gene053148:intron | 40.0% | |
| TCACTTAGTGGGATAAGGTT+TGG | + | chr4.2:91694902-91694921 | MS.gene053148:intron | 40.0% | |
| TGTGTTGAAGAAGCAGAACA+GGG | + | chr4.2:91694123-91694142 | MS.gene053148:CDS | 40.0% | |
| TTCAAGCTTAAGGCTCCATT+GGG | + | chr4.2:91696066-91696085 | MS.gene053148:CDS | 40.0% | |
| TTCTTCTTTAAGCCACCCAA+TGG | - | chr4.2:91696084-91696103 | None:intergenic | 40.0% | |
| ! | GCAGTATTCTCAAGAGTATG+AGG | + | chr4.2:91694237-91694256 | MS.gene053148:CDS | 40.0% |
| ! | GTTGAGCCTTATGTGACTTA+TGG | + | chr4.2:91695665-91695684 | MS.gene053148:CDS | 40.0% |
| !! | ATAAGGCGTTGTTAGCTTAG+CGG | + | chr4.2:91695010-91695029 | MS.gene053148:intron | 40.0% |
| !!! | GAAAGCCTTTTGAGTGTTGA+AGG | - | chr4.2:91695742-91695761 | None:intergenic | 40.0% |
| ACATGTAGAGAGAAGACCTG+TGG | + | chr4.2:91694705-91694724 | MS.gene053148:intron | 45.0% | |
| ACCCAACTAGAAACACGACA+AGG | - | chr4.2:91695455-91695474 | None:intergenic | 45.0% | |
| ACTAAGTGAGATCGGCTACA+TGG | - | chr4.2:91694891-91694910 | None:intergenic | 45.0% | |
| AGCAGAACAGGGAAGAACAA+TGG | + | chr4.2:91694134-91694153 | MS.gene053148:CDS | 45.0% | |
| AGGAACCACTATGTTGAAGG+CGG | + | chr4.2:91696105-91696124 | MS.gene053148:CDS | 45.0% | |
| AGGGAACTCATCTACAAACG+TGG | + | chr4.2:91695797-91695816 | MS.gene053148:CDS | 45.0% | |
| ATAAACAAGAGCTTGGCCTC+TGG | - | chr4.2:91694460-91694479 | None:intergenic | 45.0% | |
| ATCCACGAGATCTTGACTGT+TGG | + | chr4.2:91696006-91696025 | MS.gene053148:CDS | 45.0% | |
| ATGTAGCCGATCTCACTTAG+TGG | + | chr4.2:91694890-91694909 | MS.gene053148:intron | 45.0% | |
| CGATCTCACTTAGTGGGATA+AGG | + | chr4.2:91694897-91694916 | MS.gene053148:intron | 45.0% | |
| CTCATCTACAAACGTGGGTA+TGG | + | chr4.2:91695803-91695822 | MS.gene053148:CDS | 45.0% | |
| CTCCTTGCTACAAAATCCAC+AGG | - | chr4.2:91694724-91694743 | None:intergenic | 45.0% | |
| CTGTGTTGAAGAAGCAGAAC+AGG | + | chr4.2:91694122-91694141 | MS.gene053148:CDS | 45.0% | |
| GACTGTTGGACCACATTTCA+AGG | + | chr4.2:91696020-91696039 | MS.gene053148:CDS | 45.0% | |
| GAGAACCGTAAGCTGATCTA+TGG | + | chr4.2:91694205-91694224 | MS.gene053148:CDS | 45.0% | |
| GCAACTGTTTCGATTGAGAC+AGG | + | chr4.2:91695364-91695383 | MS.gene053148:CDS | 45.0% | |
| GCAGAACAGGGAAGAACAAT+GGG | + | chr4.2:91694135-91694154 | MS.gene053148:CDS | 45.0% | |
| GGGAACTCATCTACAAACGT+GGG | + | chr4.2:91695798-91695817 | MS.gene053148:CDS | 45.0% | |
| GTTCAAGCTTAAGGCTCCAT+TGG | + | chr4.2:91696065-91696084 | MS.gene053148:CDS | 45.0% | |
| TGCTTCTTCAACACAGACTC+AGG | - | chr4.2:91694118-91694137 | None:intergenic | 45.0% | |
| TGGGTGGCTTAAAGAAGAAG+AGG | + | chr4.2:91696085-91696104 | MS.gene053148:CDS | 45.0% | |
| TGTAGCCGATCTCACTTAGT+GGG | + | chr4.2:91694891-91694910 | MS.gene053148:intron | 45.0% | |
| ! | GACCTGTGGATTTTGTAGCA+AGG | + | chr4.2:91694719-91694738 | MS.gene053148:intron | 45.0% |
| !! | GCCTTGTCGTGTTTCTAGTT+GGG | + | chr4.2:91695451-91695470 | MS.gene053148:intron | 45.0% |
| !! | GTTGATTAGTTTGAAGCGCG+AGG | + | chr4.2:91694405-91694424 | MS.gene053148:CDS | 45.0% |
| !! | TGCCTTGTCGTGTTTCTAGT+TGG | + | chr4.2:91695450-91695469 | MS.gene053148:intron | 45.0% |
| !! | TGTTGTCCGTCGATTCAGAT+TGG | + | chr4.2:91694935-91694954 | MS.gene053148:intron | 45.0% |
| AAGCTTAAGGCTCCATTGGG+TGG | + | chr4.2:91696069-91696088 | MS.gene053148:CDS | 50.0% | |
| ACCGTAAGCTGATCTATGGC+AGG | + | chr4.2:91694209-91694228 | MS.gene053148:CDS | 50.0% | |
| CATCACCGCCTTCAACATAG+TGG | - | chr4.2:91696113-91696132 | None:intergenic | 50.0% | |
| CCCTGCCATAGATCAGCTTA+CGG | - | chr4.2:91694213-91694232 | None:intergenic | 50.0% | |
| CCGTAAGCTGATCTATGGCA+GGG | + | chr4.2:91694210-91694229 | MS.gene053148:CDS | 50.0% | |
| CCTTAAGCTTGAACGGCCAA+AGG | - | chr4.2:91696059-91696078 | None:intergenic | 50.0% | |
| CCTTTGGCCGTTCAAGCTTA+AGG | + | chr4.2:91696056-91696075 | MS.gene053148:CDS | 50.0% | |
| GTCACTGCAGTGCTCTTGTT+TGG | + | chr4.2:91694276-91694295 | MS.gene053148:intron | 50.0% | |
| GTCCAACAGTCAAGATCTCG+TGG | - | chr4.2:91696011-91696030 | None:intergenic | 50.0% | |
| GTGGGTATGGAAAGCTAGAC+AGG | + | chr4.2:91695816-91695835 | MS.gene053148:CDS | 50.0% | |
| TATGTTGAAGGCGGTGATGC+TGG | + | chr4.2:91696114-91696133 | MS.gene053148:CDS | 50.0% | |
| TTTCCTTGTCTTGGGGTCCA+TGG | - | chr4.2:91695339-91695358 | None:intergenic | 50.0% | |
| ! | ACGTGCTTTGATGACCCTCA+GGG | + | chr4.2:91695946-91695965 | MS.gene053148:intron | 50.0% |
| ! | CAGGGAAGAACAATGGGCTT+TGG | + | chr4.2:91694141-91694160 | MS.gene053148:CDS | 50.0% |
| ! | TTTGATGACCCTCAGGGACT+GGG | + | chr4.2:91695952-91695971 | MS.gene053148:intron | 50.0% |
| AAGCGCGAGGCTAAGCTGAA+AGG | + | chr4.2:91694418-91694437 | MS.gene053148:CDS | 55.0% | |
| ATGCCATGGACCCCAAGACA+AGG | + | chr4.2:91695333-91695352 | MS.gene053148:CDS | 55.0% | |
| CATGCTTTCCCAGTCCCTGA+GGG | - | chr4.2:91695963-91695982 | None:intergenic | 55.0% | |
| ! | CTTTGATGACCCTCAGGGAC+TGG | + | chr4.2:91695951-91695970 | MS.gene053148:intron | 55.0% |
| ! | GACGTGCTTTGATGACCCTC+AGG | + | chr4.2:91695945-91695964 | MS.gene053148:intron | 55.0% |
| CCATGCTTTCCCAGTCCCTG+AGG | - | chr4.2:91695964-91695983 | None:intergenic | 60.0% | |
| CCTCAGGGACTGGGAAAGCA+TGG | + | chr4.2:91695961-91695980 | MS.gene053148:intron | 60.0% | |
| CGCGAGGCTAAGCTGAAAGG+TGG | + | chr4.2:91694421-91694440 | MS.gene053148:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 91694088 | 91696182 | 91694088 | ID=MS.gene053148 |
| chr4.2 | mRNA | 91694088 | 91696182 | 91694088 | ID=MS.gene053148.t1;Parent=MS.gene053148 |
| chr4.2 | exon | 91694088 | 91694264 | 91694088 | ID=MS.gene053148.t1.exon1;Parent=MS.gene053148.t1 |
| chr4.2 | CDS | 91694088 | 91694264 | 91694088 | ID=cds.MS.gene053148.t1;Parent=MS.gene053148.t1 |
| chr4.2 | exon | 91694397 | 91694494 | 91694397 | ID=MS.gene053148.t1.exon2;Parent=MS.gene053148.t1 |
| chr4.2 | CDS | 91694397 | 91694494 | 91694397 | ID=cds.MS.gene053148.t1;Parent=MS.gene053148.t1 |
| chr4.2 | exon | 91695328 | 91695385 | 91695328 | ID=MS.gene053148.t1.exon3;Parent=MS.gene053148.t1 |
| chr4.2 | CDS | 91695328 | 91695385 | 91695328 | ID=cds.MS.gene053148.t1;Parent=MS.gene053148.t1 |
| chr4.2 | exon | 91695608 | 91695687 | 91695608 | ID=MS.gene053148.t1.exon4;Parent=MS.gene053148.t1 |
| chr4.2 | CDS | 91695608 | 91695687 | 91695608 | ID=cds.MS.gene053148.t1;Parent=MS.gene053148.t1 |
| chr4.2 | exon | 91695775 | 91695877 | 91695775 | ID=MS.gene053148.t1.exon5;Parent=MS.gene053148.t1 |
| chr4.2 | CDS | 91695775 | 91695877 | 91695775 | ID=cds.MS.gene053148.t1;Parent=MS.gene053148.t1 |
| chr4.2 | exon | 91695967 | 91696182 | 91695967 | ID=MS.gene053148.t1.exon6;Parent=MS.gene053148.t1 |
| chr4.2 | CDS | 91695967 | 91696182 | 91695967 | ID=cds.MS.gene053148.t1;Parent=MS.gene053148.t1 |
| Gene Sequence |
| Protein sequence |
