Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054580.t1 | XP_013454579.1 | 98.8 | 243 | 3 | 0 | 1 | 243 | 1 | 243 | 7.50E-131 | 476.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054580.t1 | Q9LHP1 | 84.6 | 240 | 37 | 0 | 4 | 243 | 5 | 244 | 9.9e-116 | 417.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054580.t1 | A0A072URW1 | 98.8 | 243 | 3 | 0 | 1 | 243 | 1 | 243 | 5.4e-131 | 476.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene09845 | MS.gene054580 | PPI |
| MS.gene022752 | MS.gene054580 | PPI |
| MS.gene56166 | MS.gene054580 | PPI |
| MS.gene054580 | MS.gene24260 | PPI |
| MS.gene39294 | MS.gene054580 | PPI |
| MS.gene037074 | MS.gene054580 | PPI |
| MS.gene08488 | MS.gene054580 | PPI |
| MS.gene034156 | MS.gene054580 | PPI |
| MS.gene25010 | MS.gene054580 | PPI |
| MS.gene66047 | MS.gene054580 | PPI |
| MS.gene018553 | MS.gene054580 | PPI |
| MS.gene78232 | MS.gene054580 | PPI |
| MS.gene45646 | MS.gene054580 | PPI |
| MS.gene26979 | MS.gene054580 | PPI |
| MS.gene050985 | MS.gene054580 | PPI |
| MS.gene81068 | MS.gene054580 | PPI |
| MS.gene061905 | MS.gene054580 | PPI |
| MS.gene24260 | MS.gene054580 | PPI |
| MS.gene65129 | MS.gene054580 | PPI |
| MS.gene020215 | MS.gene054580 | PPI |
| MS.gene034157 | MS.gene054580 | PPI |
| MS.gene77207 | MS.gene054580 | PPI |
| MS.gene64512 | MS.gene054580 | PPI |
| MS.gene053148 | MS.gene054580 | PPI |
| MS.gene55098 | MS.gene054580 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054580.t1 | MTR_4g008160 | 98.765 | 243 | 3 | 0 | 1 | 243 | 1 | 243 | 4.57e-179 | 491 |
| MS.gene054580.t1 | MTR_1g022385 | 87.137 | 241 | 31 | 0 | 3 | 243 | 35 | 275 | 3.97e-159 | 442 |
| MS.gene054580.t1 | MTR_2g038250 | 86.307 | 241 | 33 | 0 | 3 | 243 | 4 | 244 | 6.09e-158 | 438 |
| MS.gene054580.t1 | MTR_7g059170 | 47.234 | 235 | 123 | 1 | 9 | 243 | 13 | 246 | 1.10e-74 | 227 |
| MS.gene054580.t1 | MTR_1g022375 | 62.745 | 102 | 38 | 0 | 132 | 233 | 55 | 156 | 5.32e-39 | 133 |
| MS.gene054580.t1 | MTR_1g108785 | 58.621 | 58 | 18 | 4 | 184 | 235 | 2 | 59 | 1.97e-12 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054580.t1 | AT3G13580 | 84.583 | 240 | 37 | 0 | 4 | 243 | 5 | 244 | 8.49e-155 | 430 |
| MS.gene054580.t1 | AT3G13580 | 84.583 | 240 | 37 | 0 | 4 | 243 | 5 | 244 | 8.49e-155 | 430 |
| MS.gene054580.t1 | AT3G13580 | 84.583 | 240 | 37 | 0 | 4 | 243 | 5 | 244 | 8.49e-155 | 430 |
| MS.gene054580.t1 | AT3G13580 | 84.583 | 240 | 37 | 0 | 4 | 243 | 5 | 244 | 8.49e-155 | 430 |
| MS.gene054580.t1 | AT3G13580 | 84.583 | 240 | 37 | 0 | 4 | 243 | 5 | 244 | 8.49e-155 | 430 |
| MS.gene054580.t1 | AT3G13580 | 84.583 | 240 | 37 | 0 | 4 | 243 | 5 | 244 | 8.49e-155 | 430 |
| MS.gene054580.t1 | AT3G13580 | 84.583 | 240 | 37 | 0 | 4 | 243 | 5 | 244 | 8.49e-155 | 430 |
| MS.gene054580.t1 | AT3G13580 | 84.583 | 240 | 37 | 0 | 4 | 243 | 5 | 244 | 8.49e-155 | 430 |
| MS.gene054580.t1 | AT3G13580 | 84.583 | 240 | 37 | 0 | 4 | 243 | 5 | 244 | 8.49e-155 | 430 |
| MS.gene054580.t1 | AT2G01250 | 85.417 | 240 | 35 | 0 | 4 | 243 | 3 | 242 | 5.51e-153 | 425 |
| MS.gene054580.t1 | AT2G44120 | 81.667 | 240 | 44 | 0 | 4 | 243 | 3 | 242 | 7.32e-148 | 412 |
| MS.gene054580.t1 | AT2G44120 | 81.667 | 240 | 44 | 0 | 4 | 243 | 8 | 247 | 1.07e-147 | 412 |
| MS.gene054580.t1 | AT2G01250 | 80.000 | 175 | 35 | 0 | 4 | 178 | 3 | 177 | 3.93e-97 | 281 |
| MS.gene054580.t1 | AT1G80750 | 42.623 | 244 | 137 | 2 | 3 | 243 | 4 | 247 | 1.21e-60 | 191 |
Find 57 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTTGCTTTGTTAACTTTA+AGG | 0.072962 | 4.1:-87253511 | None:intergenic |
| TCTCTTACACTCTTCAAATT+TGG | 0.100589 | 4.1:-87253661 | None:intergenic |
| GTTGAGCCTTATGTTACTTA+TGG | 0.229078 | 4.1:+87253551 | MS.gene054580:CDS |
| AAATAGTTGTAAGATCTTTC+TGG | 0.235790 | 4.1:-87253275 | None:intergenic |
| TGTAAGATCTTTCTGGTCTT+GGG | 0.274362 | 4.1:-87253268 | None:intergenic |
| CTCTTACACTCTTCAAATTT+GGG | 0.282218 | 4.1:-87253660 | None:intergenic |
| TTGTAAGATCTTTCTGGTCT+TGG | 0.295588 | 4.1:-87253269 | None:intergenic |
| TTGAGCCTTATGTTACTTAT+GGG | 0.355143 | 4.1:+87253552 | MS.gene054580:CDS |
| TTCTTCTTTAAGCCACCTAA+TGG | 0.361320 | 4.1:-87253963 | None:intergenic |
| CTGTGTTGAAGAAGCAGAAC+AGG | 0.363263 | 4.1:+87252094 | MS.gene054580:CDS |
| TTCTCAGGAGTACGAGAATA+AGG | 0.363769 | 4.1:+87252215 | MS.gene054580:CDS |
| AGGAAGCAAACAACTTCCTT+TGG | 0.396409 | 4.1:+87253922 | MS.gene054580:CDS |
| CTTTCTGGTCTTGGGGTCCA+TGG | 0.403447 | 4.1:-87253260 | None:intergenic |
| ATTACATCAATGAGCTCATC+AGG | 0.421060 | 4.1:+87254030 | MS.gene054580:CDS |
| TTTGATGACCCTCAGGGACT+TGG | 0.425158 | 4.1:+87253834 | MS.gene054580:intron |
| CTCATTTACAAACGTGGGTA+TGG | 0.433954 | 4.1:+87253685 | MS.gene054580:CDS |
| GACTGTTGGACCACATTTCA+AGG | 0.435400 | 4.1:+87253902 | MS.gene054580:CDS |
| AATGGAGCCTTGAGCTTGAA+TGG | 0.452879 | 4.1:-87253945 | None:intergenic |
| CAGGGCTAAGCAGTATTCTC+AGG | 0.463203 | 4.1:+87252200 | MS.gene054580:CDS |
| CAGGGAAGAACAATGGGCTT+TGG | 0.464957 | 4.1:+87252113 | MS.gene054580:CDS |
| TATGTTGAAGGTGGTGATGC+TGG | 0.471894 | 4.1:+87253996 | MS.gene054580:CDS |
| ACCGTAAGCTGATCTACAGC+AGG | 0.472356 | 4.1:+87252181 | MS.gene054580:CDS |
| ATAAACAAGAGCTTGGCCTC+TGG | 0.475047 | 4.1:-87252396 | None:intergenic |
| TTCAAGCTCAAGGCTCCATT+AGG | 0.488861 | 4.1:+87253948 | MS.gene054580:CDS |
| CCCTGCTGTAGATCAGCTTA+CGG | 0.489319 | 4.1:-87252182 | None:intergenic |
| GCAGAACAGGGAAGAACAAT+GGG | 0.492072 | 4.1:+87252107 | MS.gene054580:CDS |
| ACAACTATTTCGATTGAGAC+AGG | 0.493105 | 4.1:+87253288 | MS.gene054580:CDS |
| CCTTTGGCCATTCAAGCTCA+AGG | 0.494583 | 4.1:+87253938 | MS.gene054580:CDS |
| TGCTTCTTCAACACAGACTC+AGG | 0.496291 | 4.1:-87252087 | None:intergenic |
| GTAAGATCTTTCTGGTCTTG+GGG | 0.510930 | 4.1:-87253267 | None:intergenic |
| GCGAATAATAAACAAGAGCT+TGG | 0.515051 | 4.1:-87252403 | None:intergenic |
| CAACAATGAACATGTTGCAC+AGG | 0.520606 | 4.1:+87253528 | MS.gene054580:CDS |
| TTGTTTATTATTCGCATCCG+AGG | 0.520937 | 4.1:+87252411 | MS.gene054580:CDS |
| AAGAGGAACCACTATGTTGA+AGG | 0.525876 | 4.1:+87253984 | MS.gene054580:CDS |
| AAATTTCAGTATAAATGCCA+TGG | 0.529314 | 4.1:+87253243 | MS.gene054580:intron |
| ACATACCCATAAGTAACATA+AGG | 0.538872 | 4.1:-87253557 | None:intergenic |
| ATTGATTAGTTTAAAGCGTG+AGG | 0.551453 | 4.1:+87252344 | MS.gene054580:CDS |
| TGACAACTCAATTATTGAGC+AGG | 0.556335 | 4.1:+87253738 | MS.gene054580:CDS |
| AGCAGAACAGGGAAGAACAA+TGG | 0.564767 | 4.1:+87252106 | MS.gene054580:CDS |
| TGTTTATTATTCGCATCCGA+GGG | 0.566776 | 4.1:+87252412 | MS.gene054580:CDS |
| AAGCTCAAGGCTCCATTAGG+TGG | 0.567367 | 4.1:+87253951 | MS.gene054580:CDS |
| TTGTTTGCTTCCTTGAAATG+TGG | 0.570988 | 4.1:-87253912 | None:intergenic |
| CCTCAGGGACTTGGAAAGCA+TGG | 0.571914 | 4.1:+87253843 | MS.gene054580:intron |
| GGATAAGATCTTCAATGCAT+AGG | 0.579833 | 4.1:-87253869 | None:intergenic |
| TAGGTGGCTTAAAGAAGAAG+AGG | 0.590035 | 4.1:+87253967 | MS.gene054580:CDS |
| AAGCGTGAGGCTAAGCTGAA+AGG | 0.593383 | 4.1:+87252357 | MS.gene054580:CDS |
| GTCCAACAGTCAAAATCTCG+TGG | 0.605025 | 4.1:-87253890 | None:intergenic |
| CATCACCACCTTCAACATAG+TGG | 0.607000 | 4.1:-87253992 | None:intergenic |
| ATAATTGAGTTGTCAGTGAG+AGG | 0.608273 | 4.1:-87253730 | None:intergenic |
| CGTGAGGCTAAGCTGAAAGG+TGG | 0.626018 | 4.1:+87252360 | MS.gene054580:CDS |
| GAGAACTCATTTACAAACGT+GGG | 0.634711 | 4.1:+87253680 | MS.gene054580:CDS |
| TGTGTTGAAGAAGCAGAACA+GGG | 0.649087 | 4.1:+87252095 | MS.gene054580:CDS |
| CCTTGAGCTTGAATGGCCAA+AGG | 0.649985 | 4.1:-87253938 | None:intergenic |
| AGAGAACTCATTTACAAACG+TGG | 0.653419 | 4.1:+87253679 | MS.gene054580:CDS |
| AACAATGAACATGTTGCACA+GGG | 0.654102 | 4.1:+87253529 | MS.gene054580:CDS |
| AGGAACCACTATGTTGAAGG+TGG | 0.676309 | 4.1:+87253987 | MS.gene054580:CDS |
| CCGTAAGCTGATCTACAGCA+GGG | 0.696480 | 4.1:+87252182 | MS.gene054580:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACATTTTAAAACAACTATAT+AGG | + | chr4.1:87253415-87253434 | MS.gene054580:intron | 15.0% |
| !!! | ATTTTAAAACAACTATATAG+GGG | + | chr4.1:87253417-87253436 | MS.gene054580:intron | 15.0% |
| !!! | CATTTTAAAACAACTATATA+GGG | + | chr4.1:87253416-87253435 | MS.gene054580:intron | 15.0% |
| !! | AATCATTGTCTTTAAATCAA+TGG | - | chr4.1:87253594-87253613 | None:intergenic | 20.0% |
| !! | ACAGAACGTTATAAAAAAAA+CGG | - | chr4.1:87253097-87253116 | None:intergenic | 20.0% |
| !! | ATCATTGTCTTTAAATCAAT+GGG | - | chr4.1:87253593-87253612 | None:intergenic | 20.0% |
| !! | GTTCTTTACAAAAATTAACA+AGG | + | chr4.1:87252938-87252957 | MS.gene054580:intron | 20.0% |
| !!! | AATGAGTTTTTATCGAAATA+TGG | + | chr4.1:87252788-87252807 | MS.gene054580:intron | 20.0% |
| !!! | ATTATAAAGATATGAGCTTT+TGG | - | chr4.1:87253057-87253076 | None:intergenic | 20.0% |
| ! | AAAACAAATAAACATACCCT+CGG | - | chr4.1:87252431-87252450 | None:intergenic | 25.0% |
| ! | AAATAGTTGTAAGATCTTTC+TGG | - | chr4.1:87253278-87253297 | None:intergenic | 25.0% |
| ! | AAATTTCAGTATAAATGCCA+TGG | + | chr4.1:87253243-87253262 | MS.gene054580:intron | 25.0% |
| ! | AACACATTGTATTTCTTTGA+GGG | + | chr4.1:87253375-87253394 | MS.gene054580:intron | 25.0% |
| ! | AGTACATATAGTAGAAAACA+TGG | + | chr4.1:87252610-87252629 | MS.gene054580:intron | 25.0% |
| ! | ATCTGTTGAGCAAAAATATT+AGG | - | chr4.1:87253476-87253495 | None:intergenic | 25.0% |
| ! | TAACACATTGTATTTCTTTG+AGG | + | chr4.1:87253374-87253393 | MS.gene054580:intron | 25.0% |
| ! | TATAAAAAAAACGGAGTTGT+TGG | - | chr4.1:87253088-87253107 | None:intergenic | 25.0% |
| ! | TGGTATTTGATAGAAATGTA+TGG | + | chr4.1:87252808-87252827 | MS.gene054580:intron | 25.0% |
| !!! | CACTTCATTTTTAAGTTGTT+AGG | + | chr4.1:87253340-87253359 | MS.gene054580:intron | 25.0% |
| !!! | CTTCTTTGTTGTTAGTTTAA+TGG | + | chr4.1:87252962-87252981 | MS.gene054580:intron | 25.0% |
| !!! | TACCTATGGATTTTTTAGTA+AGG | + | chr4.1:87252672-87252691 | MS.gene054580:intron | 25.0% |
| !!! | TTGTTGCTTTGTTAACTTTA+AGG | - | chr4.1:87253514-87253533 | None:intergenic | 25.0% |
| !!! | TTTTGAAGTTAACAAGAGTT+AGG | - | chr4.1:87253226-87253245 | None:intergenic | 25.0% |
| AAACCACAACACAATTGATT+AGG | - | chr4.1:87252309-87252328 | None:intergenic | 30.0% | |
| ACATACCCATAAGTAACATA+AGG | - | chr4.1:87253560-87253579 | None:intergenic | 30.0% | |
| ACATATAGTAGAAAACATGG+TGG | + | chr4.1:87252613-87252632 | MS.gene054580:intron | 30.0% | |
| CTCCTTACTAAAAAATCCAT+AGG | - | chr4.1:87252677-87252696 | None:intergenic | 30.0% | |
| CTCTTACACTCTTCAAATTT+GGG | - | chr4.1:87253663-87253682 | None:intergenic | 30.0% | |
| TCTCTTACACTCTTCAAATT+TGG | - | chr4.1:87253664-87253683 | None:intergenic | 30.0% | |
| TTGTCTTTAAATCAATGGGA+AGG | - | chr4.1:87253589-87253608 | None:intergenic | 30.0% | |
| ! | GCTCATTGATGTAATTTTCA+CGG | - | chr4.1:87254025-87254044 | None:intergenic | 30.0% |
| ! | TATATAGGGGATATTTCTGT+TGG | + | chr4.1:87253430-87253449 | MS.gene054580:intron | 30.0% |
| ! | TGTTAGTTTAATGGTGTTTG+TGG | + | chr4.1:87252971-87252990 | MS.gene054580:intron | 30.0% |
| ! | TTGAGCCTTATGTTACTTAT+GGG | + | chr4.1:87253552-87253571 | MS.gene054580:CDS | 30.0% |
| ! | TTTGCTCAACAGATTTTCAA+TGG | + | chr4.1:87253482-87253501 | MS.gene054580:intron | 30.0% |
| !! | ATTGATTAGTTTAAAGCGTG+AGG | + | chr4.1:87252344-87252363 | MS.gene054580:CDS | 30.0% |
| !!! | ATTGTGTTGTGGTTTTGTAT+AGG | + | chr4.1:87252314-87252333 | MS.gene054580:intron | 30.0% |
| !!! | TGTTTTGTGTTGATTCAGAT+TGG | + | chr4.1:87252445-87252464 | MS.gene054580:intron | 30.0% |
| !!! | TTGTGGTTTTGTATAGGAAA+GGG | + | chr4.1:87252320-87252339 | MS.gene054580:intron | 30.0% |
| AACAATGAACATGTTGCACA+GGG | + | chr4.1:87253529-87253548 | MS.gene054580:CDS | 35.0% | |
| AAGGAGAGTAGATCATACAA+GGG | + | chr4.1:87252691-87252710 | MS.gene054580:intron | 35.0% | |
| ACAACTATTTCGATTGAGAC+AGG | + | chr4.1:87253288-87253307 | MS.gene054580:CDS | 35.0% | |
| AGAGAACTCATTTACAAACG+TGG | + | chr4.1:87253679-87253698 | MS.gene054580:CDS | 35.0% | |
| AGTCAAATCACTAGAGGTAA+GGG | + | chr4.1:87252716-87252735 | MS.gene054580:intron | 35.0% | |
| ATTACATCAATGAGCTCATC+AGG | + | chr4.1:87254030-87254049 | MS.gene054580:CDS | 35.0% | |
| CAATTGTTTCAAAAGCTTGC+TGG | - | chr4.1:87253014-87253033 | None:intergenic | 35.0% | |
| CGCTTCATTCAATTTCATGT+TGG | - | chr4.1:87252496-87252515 | None:intergenic | 35.0% | |
| CTGTTGGTATAAAAGCAGTT+TGG | + | chr4.1:87253446-87253465 | MS.gene054580:intron | 35.0% | |
| CTTATCTCACTAAGTGAAGT+CGG | - | chr4.1:87252853-87252872 | None:intergenic | 35.0% | |
| GAGAACTCATTTACAAACGT+GGG | + | chr4.1:87253680-87253699 | MS.gene054580:CDS | 35.0% | |
| GCGAATAATAAACAAGAGCT+TGG | - | chr4.1:87252406-87252425 | None:intergenic | 35.0% | |
| GGATAAGATCTTCAATGCAT+AGG | - | chr4.1:87253872-87253891 | None:intergenic | 35.0% | |
| GTGGTAAGATTGAATGAGAT+AGG | + | chr4.1:87252546-87252565 | MS.gene054580:intron | 35.0% | |
| GTTCCTAATCAATTGTGTTG+TGG | + | chr4.1:87252303-87252322 | MS.gene054580:intron | 35.0% | |
| TAAGGAGAGTAGATCATACA+AGG | + | chr4.1:87252690-87252709 | MS.gene054580:intron | 35.0% | |
| TCACTTAGTGAGATAAGGTT+TGG | + | chr4.1:87252856-87252875 | MS.gene054580:intron | 35.0% | |
| TGACAACTCAATTATTGAGC+AGG | + | chr4.1:87253738-87253757 | MS.gene054580:CDS | 35.0% | |
| TGTTTATTATTCGCATCCGA+GGG | + | chr4.1:87252412-87252431 | MS.gene054580:CDS | 35.0% | |
| TTCTACTATATGTACTACCC+TGG | - | chr4.1:87252606-87252625 | None:intergenic | 35.0% | |
| TTCTTCTTTAAGCCACCTAA+TGG | - | chr4.1:87253966-87253985 | None:intergenic | 35.0% | |
| TTGTTTATTATTCGCATCCG+AGG | + | chr4.1:87252411-87252430 | MS.gene054580:CDS | 35.0% | |
| TTGTTTGCTTCCTTGAAATG+TGG | - | chr4.1:87253915-87253934 | None:intergenic | 35.0% | |
| ! | AGAATTTTGCGTTGTATGTG+TGG | + | chr4.1:87252527-87252546 | MS.gene054580:intron | 35.0% |
| ! | ATAATTGAGTTGTCAGTGAG+AGG | - | chr4.1:87253733-87253752 | None:intergenic | 35.0% |
| ! | GTTGAGCCTTATGTTACTTA+TGG | + | chr4.1:87253551-87253570 | MS.gene054580:CDS | 35.0% |
| ! | TAGAAAACATGGTGGAAACT+GGG | + | chr4.1:87252621-87252640 | MS.gene054580:intron | 35.0% |
| ! | TCAGATTGGATTAGAGTGTT+AGG | + | chr4.1:87252459-87252478 | MS.gene054580:intron | 35.0% |
| ! | TGGATTTTATGTTGATCCAG+AGG | + | chr4.1:87252380-87252399 | MS.gene054580:CDS | 35.0% |
| ! | TGTAAGATCTTTCTGGTCTT+GGG | - | chr4.1:87253271-87253290 | None:intergenic | 35.0% |
| ! | TTGTAAGATCTTTCTGGTCT+TGG | - | chr4.1:87253272-87253291 | None:intergenic | 35.0% |
| !! | TTCAAAAGCTTGCTGGTAAT+TGG | - | chr4.1:87253007-87253026 | None:intergenic | 35.0% |
| !!! | GTTGTGGTTTTGTATAGGAA+AGG | + | chr4.1:87252319-87252338 | MS.gene054580:intron | 35.0% |
| AAGAGGAACCACTATGTTGA+AGG | + | chr4.1:87253984-87254003 | MS.gene054580:CDS | 40.0% | |
| ACTAAGTGAAGTCGGCTATA+TGG | - | chr4.1:87252845-87252864 | None:intergenic | 40.0% | |
| AGGAAGCAAACAACTTCCTT+TGG | + | chr4.1:87253922-87253941 | MS.gene054580:CDS | 40.0% | |
| AGGAGAGTAGATCATACAAG+GGG | + | chr4.1:87252692-87252711 | MS.gene054580:intron | 40.0% | |
| CAACAATGAACATGTTGCAC+AGG | + | chr4.1:87253528-87253547 | MS.gene054580:CDS | 40.0% | |
| CGACTTCACTTAGTGAGATA+AGG | + | chr4.1:87252851-87252870 | MS.gene054580:intron | 40.0% | |
| CTCATTTACAAACGTGGGTA+TGG | + | chr4.1:87253685-87253704 | MS.gene054580:CDS | 40.0% | |
| GAGTCAAATCACTAGAGGTA+AGG | + | chr4.1:87252715-87252734 | MS.gene054580:intron | 40.0% | |
| TAGGTGGCTTAAAGAAGAAG+AGG | + | chr4.1:87253967-87253986 | MS.gene054580:CDS | 40.0% | |
| TCAGAACAGCAAAACATCGA+AGG | - | chr4.1:87253199-87253218 | None:intergenic | 40.0% | |
| TGTGTTGAAGAAGCAGAACA+GGG | + | chr4.1:87252095-87252114 | MS.gene054580:CDS | 40.0% | |
| ! | GTAGAAAACATGGTGGAAAC+TGG | + | chr4.1:87252620-87252639 | MS.gene054580:intron | 40.0% |
| ! | TTCTCAGGAGTACGAGAATA+AGG | + | chr4.1:87252215-87252234 | MS.gene054580:CDS | 40.0% |
| !! | GTAAGATCTTTCTGGTCTTG+GGG | - | chr4.1:87253270-87253289 | None:intergenic | 40.0% |
| !!! | ATCCACGAGATTTTGACTGT+TGG | + | chr4.1:87253888-87253907 | MS.gene054580:CDS | 40.0% |
| AATGGAGCCTTGAGCTTGAA+TGG | - | chr4.1:87253948-87253967 | None:intergenic | 45.0% | |
| AGCAGAACAGGGAAGAACAA+TGG | + | chr4.1:87252106-87252125 | MS.gene054580:CDS | 45.0% | |
| AGGAACCACTATGTTGAAGG+TGG | + | chr4.1:87253987-87254006 | MS.gene054580:CDS | 45.0% | |
| ATAAACAAGAGCTTGGCCTC+TGG | - | chr4.1:87252399-87252418 | None:intergenic | 45.0% | |
| CATCACCACCTTCAACATAG+TGG | - | chr4.1:87253995-87254014 | None:intergenic | 45.0% | |
| CTGTGTTGAAGAAGCAGAAC+AGG | + | chr4.1:87252094-87252113 | MS.gene054580:CDS | 45.0% | |
| GACTGTTGGACCACATTTCA+AGG | + | chr4.1:87253902-87253921 | MS.gene054580:CDS | 45.0% | |
| GCAGAACAGGGAAGAACAAT+GGG | + | chr4.1:87252107-87252126 | MS.gene054580:CDS | 45.0% | |
| GGAGAGTAGATCATACAAGG+GGG | + | chr4.1:87252693-87252712 | MS.gene054580:intron | 45.0% | |
| GTCCAACAGTCAAAATCTCG+TGG | - | chr4.1:87253893-87253912 | None:intergenic | 45.0% | |
| TAGAGAGTTAGAGAGAGCCA+GGG | + | chr4.1:87252586-87252605 | MS.gene054580:intron | 45.0% | |
| TGCTTCTTCAACACAGACTC+AGG | - | chr4.1:87252090-87252109 | None:intergenic | 45.0% | |
| TTAGAGAGTTAGAGAGAGCC+AGG | + | chr4.1:87252585-87252604 | MS.gene054580:intron | 45.0% | |
| TTCAAGCTCAAGGCTCCATT+AGG | + | chr4.1:87253948-87253967 | MS.gene054580:CDS | 45.0% | |
| ! | ACTTGCTTTGATGACCCTCA+GGG | + | chr4.1:87253828-87253847 | MS.gene054580:intron | 45.0% |
| ! | TATGTTGAAGGTGGTGATGC+TGG | + | chr4.1:87253996-87254015 | MS.gene054580:CDS | 45.0% |
| !! | GCATGTAGAGAGAGTACCTA+TGG | + | chr4.1:87252658-87252677 | MS.gene054580:intron | 45.0% |
| AAGCGTGAGGCTAAGCTGAA+AGG | + | chr4.1:87252357-87252376 | MS.gene054580:CDS | 50.0% | |
| AAGCTCAAGGCTCCATTAGG+TGG | + | chr4.1:87253951-87253970 | MS.gene054580:CDS | 50.0% | |
| ACCGTAAGCTGATCTACAGC+AGG | + | chr4.1:87252181-87252200 | MS.gene054580:CDS | 50.0% | |
| AGGGGGAGTCAAATCACTAG+AGG | + | chr4.1:87252710-87252729 | MS.gene054580:intron | 50.0% | |
| CAGGGCTAAGCAGTATTCTC+AGG | + | chr4.1:87252200-87252219 | MS.gene054580:CDS | 50.0% | |
| CATGCTTTCCAAGTCCCTGA+GGG | - | chr4.1:87253845-87253864 | None:intergenic | 50.0% | |
| CCCTGCTGTAGATCAGCTTA+CGG | - | chr4.1:87252185-87252204 | None:intergenic | 50.0% | |
| CCGTAAGCTGATCTACAGCA+GGG | + | chr4.1:87252182-87252201 | MS.gene054580:CDS | 50.0% | |
| CCTTGAGCTTGAATGGCCAA+AGG | - | chr4.1:87253941-87253960 | None:intergenic | 50.0% | |
| CCTTTGGCCATTCAAGCTCA+AGG | + | chr4.1:87253938-87253957 | MS.gene054580:CDS | 50.0% | |
| TGGTGGAAACTGGGCTTAGA+TGG | + | chr4.1:87252630-87252649 | MS.gene054580:intron | 50.0% | |
| ! | CAGGGAAGAACAATGGGCTT+TGG | + | chr4.1:87252113-87252132 | MS.gene054580:CDS | 50.0% |
| ! | GACTTGCTTTGATGACCCTC+AGG | + | chr4.1:87253827-87253846 | MS.gene054580:intron | 50.0% |
| ! | TTTGATGACCCTCAGGGACT+TGG | + | chr4.1:87253834-87253853 | MS.gene054580:intron | 50.0% |
| CCATGCTTTCCAAGTCCCTG+AGG | - | chr4.1:87253846-87253865 | None:intergenic | 55.0% | |
| CCTCAGGGACTTGGAAAGCA+TGG | + | chr4.1:87253843-87253862 | MS.gene054580:intron | 55.0% | |
| CGTGAGGCTAAGCTGAAAGG+TGG | + | chr4.1:87252360-87252379 | MS.gene054580:CDS | 55.0% | |
| !! | CTTTCTGGTCTTGGGGTCCA+TGG | - | chr4.1:87253263-87253282 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 87252060 | 87254064 | 87252060 | ID=MS.gene054580 |
| chr4.1 | mRNA | 87252060 | 87254064 | 87252060 | ID=MS.gene054580.t1;Parent=MS.gene054580 |
| chr4.1 | exon | 87252060 | 87252236 | 87252060 | ID=MS.gene054580.t1.exon1;Parent=MS.gene054580.t1 |
| chr4.1 | CDS | 87252060 | 87252236 | 87252060 | ID=cds.MS.gene054580.t1;Parent=MS.gene054580.t1 |
| chr4.1 | exon | 87252336 | 87252433 | 87252336 | ID=MS.gene054580.t1.exon2;Parent=MS.gene054580.t1 |
| chr4.1 | CDS | 87252336 | 87252433 | 87252336 | ID=cds.MS.gene054580.t1;Parent=MS.gene054580.t1 |
| chr4.1 | exon | 87253252 | 87253309 | 87253252 | ID=MS.gene054580.t1.exon3;Parent=MS.gene054580.t1 |
| chr4.1 | CDS | 87253252 | 87253309 | 87253252 | ID=cds.MS.gene054580.t1;Parent=MS.gene054580.t1 |
| chr4.1 | exon | 87253494 | 87253573 | 87253494 | ID=MS.gene054580.t1.exon4;Parent=MS.gene054580.t1 |
| chr4.1 | CDS | 87253494 | 87253573 | 87253494 | ID=cds.MS.gene054580.t1;Parent=MS.gene054580.t1 |
| chr4.1 | exon | 87253657 | 87253759 | 87253657 | ID=MS.gene054580.t1.exon5;Parent=MS.gene054580.t1 |
| chr4.1 | CDS | 87253657 | 87253759 | 87253657 | ID=cds.MS.gene054580.t1;Parent=MS.gene054580.t1 |
| chr4.1 | exon | 87253849 | 87254064 | 87253849 | ID=MS.gene054580.t1.exon6;Parent=MS.gene054580.t1 |
| chr4.1 | CDS | 87253849 | 87254064 | 87253849 | ID=cds.MS.gene054580.t1;Parent=MS.gene054580.t1 |
| Gene Sequence |
| Protein sequence |
