AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene55098

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55098.t1 MTR_2g038250 98.361 244 4 0 1 244 1 244 3.80e-178 489
MS.gene55098.t1 MTR_1g022385 97.951 244 5 0 1 244 32 275 1.50e-177 489
MS.gene55098.t1 MTR_4g008160 86.722 241 32 0 4 244 3 243 8.50e-159 440
MS.gene55098.t1 MTR_7g059170 45.749 247 130 2 1 244 1 246 2.47e-73 223
MS.gene55098.t1 MTR_1g022375 66.667 102 34 0 133 234 55 156 6.95e-43 143
MS.gene55098.t1 MTR_1g108785 40.179 112 13 3 126 236 1 59 1.76e-15 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55098.t1 AT3G13580 82.377 244 43 0 1 244 1 244 2.51e-153 426
MS.gene55098.t1 AT3G13580 82.377 244 43 0 1 244 1 244 2.51e-153 426
MS.gene55098.t1 AT3G13580 82.377 244 43 0 1 244 1 244 2.51e-153 426
MS.gene55098.t1 AT3G13580 82.377 244 43 0 1 244 1 244 2.51e-153 426
MS.gene55098.t1 AT3G13580 82.377 244 43 0 1 244 1 244 2.51e-153 426
MS.gene55098.t1 AT3G13580 82.377 244 43 0 1 244 1 244 2.51e-153 426
MS.gene55098.t1 AT3G13580 82.377 244 43 0 1 244 1 244 2.51e-153 426
MS.gene55098.t1 AT3G13580 82.377 244 43 0 1 244 1 244 2.51e-153 426
MS.gene55098.t1 AT3G13580 82.377 244 43 0 1 244 1 244 2.51e-153 426
MS.gene55098.t1 AT2G01250 84.583 240 37 0 5 244 3 242 6.61e-152 422
MS.gene55098.t1 AT2G44120 83.333 240 40 0 5 244 8 247 2.37e-150 419
MS.gene55098.t1 AT2G44120 83.333 240 40 0 5 244 3 242 2.75e-150 418
MS.gene55098.t1 AT2G01250 80.000 175 35 0 5 179 3 177 5.20e-97 281
MS.gene55098.t1 AT1G80750 43.320 247 137 2 1 244 1 247 1.88e-63 198

Find 60 sgRNAs with CRISPR-Local

Find 132 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAAAATCTTCCTTGATTT+TGG 0.006132 2.2:-49287896 None:intergenic
TTCTCTGACACTCTTCAAAT+TGG 0.182246 2.2:-49288931 None:intergenic
AATATTCAATTGCAGGTTCT+TGG 0.263781 2.2:+49289308 MS.gene55098:intron
TGTTTCTTCAAAACAGATTC+AGG 0.264633 2.2:-49287232 None:intergenic
ACTCATTAGAAGGATGAATT+AGG 0.270598 2.2:+49289517 MS.gene55098:CDS
CTGAAACCAGGAAGCTTATC+TGG 0.274950 2.2:+49287320 MS.gene55098:CDS
TTTCAAGCTCAAAGCTCCTT+TGG 0.284641 2.2:+49289421 MS.gene55098:CDS
TTCAAGCTCAAAGCTCCTTT+GGG 0.329811 2.2:+49289422 MS.gene55098:CDS
TTGATCTACAAGCGTGGTTA+TGG 0.334090 2.2:+49288954 MS.gene55098:CDS
TTCAGCAAAAGGAGTTGATT+AGG 0.371855 2.2:+49287473 MS.gene55098:intron
TCTACTCCAGATAAGCTTCC+TGG 0.375959 2.2:-49287326 None:intergenic
AAGGTGGTGATGCTGGTAAC+AGG 0.401808 2.2:+49289477 MS.gene55098:CDS
ATATTCAATTGCAGGTTCTT+GGG 0.423006 2.2:+49289309 MS.gene55098:intron
GTACTCCTTAGCGTACTGTT+TGG 0.434466 2.2:-49287350 None:intergenic
ATGGGCATTGGTGAAGAAAC+AGG 0.439903 2.2:+49287270 MS.gene55098:CDS
ACATCAATGAACTCATTAGA+AGG 0.442744 2.2:+49289507 MS.gene55098:CDS
TAATTTCAGTATCAATGCTA+TGG 0.445420 2.2:+49287871 MS.gene55098:intron
AACAGAAAAGGAACGAGGAA+TGG 0.452197 2.2:+49287251 MS.gene55098:CDS
GCAGCTTCTGCGATTGAGAC+AGG 0.461345 2.2:+49287916 MS.gene55098:CDS
GTTGAGCCATATGTTACCTA+TGG 0.461514 2.2:+49288813 MS.gene55098:CDS
TCTCTGACACTCTTCAAATT+GGG 0.464078 2.2:-49288930 None:intergenic
GAAGCGTGAAGCTAAGCTTA+AGG 0.464202 2.2:+49287498 MS.gene55098:CDS
AAGCGTGAAGCTAAGCTTAA+GGG 0.467088 2.2:+49287499 MS.gene55098:CDS
ATGAACAAAAGCTTAGCTTC+AGG 0.472114 2.2:-49287538 None:intergenic
GCATACCCATAGGTAACATA+TGG 0.476296 2.2:-49288819 None:intergenic
AGATAACTCTATCATCGAAC+AGG 0.483740 2.2:+49289007 MS.gene55098:CDS
AAAAGAAATCACTATGTTGA+AGG 0.489111 2.2:+49289458 MS.gene55098:CDS
CAACAGTGAATATGCTCCAC+AGG 0.489617 2.2:+49288790 MS.gene55098:CDS
ACAGAAAAGGAACGAGGAAT+GGG 0.491527 2.2:+49287252 MS.gene55098:CDS
AGAAGAAGAGAGCTGAAACC+AGG 0.494410 2.2:+49287308 MS.gene55098:CDS
AAAGGAGCTTTGAGCTTGAA+AGG 0.504831 2.2:-49289419 None:intergenic
GAGAGGCAAACAACTTCCTA+TGG 0.504947 2.2:+49289396 MS.gene55098:CDS
TGAAGTGAGGTCCAACAGTA+AGG 0.528046 2.2:-49289373 None:intergenic
ATGCTATGGACCCAAAATCA+AGG 0.531480 2.2:+49287885 MS.gene55098:CDS
TATGTTGAAGGTGGTGATGC+TGG 0.533299 2.2:+49289470 MS.gene55098:CDS
ATTCATGAGATCCTTACTGT+TGG 0.542331 2.2:+49289362 MS.gene55098:CDS
TTCTTCTTCATGCCACCCAA+AGG 0.545612 2.2:-49289437 None:intergenic
GTGGTTATGGAAAGGTTGAT+AGG 0.547437 2.2:+49288967 MS.gene55098:CDS
TTGCAGGTTCTTGGGAAACA+TGG 0.547799 2.2:+49289317 MS.gene55098:intron
CGCTAAGGAGTACGATGACT+CGG 0.560110 2.2:+49287360 MS.gene55098:CDS
CTTTGAGCTTGAAAGGCCAT+AGG 0.568033 2.2:-49289412 None:intergenic
TTGTTCATTATCAGGATCAG+AGG 0.568101 2.2:+49287553 MS.gene55098:CDS
AAGCTCAAAGCTCCTTTGGG+TGG 0.570830 2.2:+49289425 MS.gene55098:CDS
TTGTTTGCCTCTCTGAAGTG+AGG 0.573961 2.2:-49289386 None:intergenic
TAGAGCCAAACAGTACGCTA+AGG 0.574389 2.2:+49287345 MS.gene55098:CDS
AAGGAACGAGGAATGGGCAT+TGG 0.574615 2.2:+49287258 MS.gene55098:CDS
CAAAACAGATTCAGGAACAA+CGG 0.575093 2.2:-49287224 None:intergenic
TGTTCATTATCAGGATCAGA+GGG 0.584717 2.2:+49287554 MS.gene55098:CDS
TTGAGCCATATGTTACCTAT+GGG 0.589704 2.2:+49288814 MS.gene55098:CDS
ATTCACTGAAATGGCCAAAG+AGG 0.608425 2.2:+49287192 None:intergenic
CTACAAGCGTGGTTATGGAA+AGG 0.617075 2.2:+49288959 MS.gene55098:CDS
AGAAATCACTATGTTGAAGG+TGG 0.631178 2.2:+49289461 MS.gene55098:CDS
CGTGAAGCTAAGCTTAAGGG+TGG 0.634387 2.2:+49287502 MS.gene55098:CDS
AGGTGGTGATGCTGGTAACA+GGG 0.651466 2.2:+49289478 MS.gene55098:CDS
TAACATATGGCTCAACCCTG+TGG 0.667309 2.2:-49288806 None:intergenic
AACAGTGAATATGCTCCACA+GGG 0.679027 2.2:+49288791 MS.gene55098:CDS
GAAGAAACAGAAAAGGAACG+AGG 0.696542 2.2:+49287246 MS.gene55098:CDS
AGAGAATTGATCTACAAGCG+TGG 0.711706 2.2:+49288948 MS.gene55098:CDS
TGTTGGACCTCACTTCAGAG+AGG 0.727556 2.2:+49289379 MS.gene55098:CDS
TGGTGATGCTGGTAACAGGG+AGG 0.759776 2.2:+49289481 MS.gene55098:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTATTATTATTTATTAAT+GGG + chr2.2:49287829-49287848 MS.gene55098:intron 0.0%
!! TTATTATTATTATTTATTAA+TGG + chr2.2:49287828-49287847 MS.gene55098:intron 0.0%
!! AAAAATTAAAGAGAAATACT+AGG - chr2.2:49288636-49288655 None:intergenic 15.0%
!! AAATTGAATACAATTTATGT+AGG + chr2.2:49287740-49287759 MS.gene55098:intron 15.0%
!! TCATCTATATAATATAAGAA+TGG + chr2.2:49288365-49288384 MS.gene55098:intron 15.0%
!!! TAATTCAGTTTTTTTTGAAT+TGG + chr2.2:49287939-49287958 MS.gene55098:intron 15.0%
!!! TAGTATTTCTCTTTAATTTT+TGG + chr2.2:49288635-49288654 MS.gene55098:intron 15.0%
!!! TTTTACAACATGTTTTATTT+CGG - chr2.2:49287645-49287664 None:intergenic 15.0%
!!! TTTTTTTTAGCTTAGATATA+AGG + chr2.2:49288589-49288608 MS.gene55098:intron 15.0%
!! AAAATCATAGAGGAAAAAAA+TGG + chr2.2:49287702-49287721 MS.gene55098:intron 20.0%
!! ATACACAACACAATTATAAT+AGG - chr2.2:49287784-49287803 None:intergenic 20.0%
!! GCAAAATAGAAAAAAATAAC+TGG - chr2.2:49289279-49289298 None:intergenic 20.0%
!! TAAAATACAAAGTCAAAATG+AGG - chr2.2:49289118-49289137 None:intergenic 20.0%
!! TACACAACACAATTATAATA+GGG - chr2.2:49287783-49287802 None:intergenic 20.0%
!! TGTATTAAACATTTAGATAG+AGG - chr2.2:49288275-49288294 None:intergenic 20.0%
!!! AGATTCTAACTTTGAAAATT+TGG - chr2.2:49289142-49289161 None:intergenic 20.0%
!!! ATAAGCAAAAACAAGTTTTT+TGG - chr2.2:49288327-49288346 None:intergenic 20.0%
!!! GATTCTAACTTTGAAAATTT+GGG - chr2.2:49289141-49289160 None:intergenic 20.0%
!!! TAAGCAAAAACAAGTTTTTT+GGG - chr2.2:49288326-49288345 None:intergenic 20.0%
! AAAAAACTTACTAAACCAGT+TGG - chr2.2:49288575-49288594 None:intergenic 25.0%
! AAAAAATTGCAAAGTGCATT+CGG - chr2.2:49288099-49288118 None:intergenic 25.0%
! AAAAGAAATCACTATGTTGA+AGG + chr2.2:49289458-49289477 MS.gene55098:CDS 25.0%
! AACTCATTATAACTCTGTAT+GGG + chr2.2:49288873-49288892 MS.gene55098:intron 25.0%
! AGCTTCAATAGTTAAGTAAA+AGG - chr2.2:49288528-49288547 None:intergenic 25.0%
! CAAGTGAGTATAACTTTAAA+TGG - chr2.2:49288013-49288032 None:intergenic 25.0%
! CTAATTATTTGATACTGAGT+AGG + chr2.2:49288485-49288504 MS.gene55098:intron 25.0%
! TAACTCATTATAACTCTGTA+TGG + chr2.2:49288872-49288891 MS.gene55098:intron 25.0%
! TAAGTAAAAGGTTATCATAC+AGG - chr2.2:49288516-49288535 None:intergenic 25.0%
! TAATTTCAGTATCAATGCTA+TGG + chr2.2:49287871-49287890 MS.gene55098:intron 25.0%
! TTAAAGTTATACTCACTTGT+TGG + chr2.2:49288014-49288033 MS.gene55098:intron 25.0%
AATATTCAATTGCAGGTTCT+TGG + chr2.2:49289308-49289327 MS.gene55098:intron 30.0%
AATTTGTGTGTTTCAGCAAA+AGG + chr2.2:49287462-49287481 MS.gene55098:intron 30.0%
ACATCAATGAACTCATTAGA+AGG + chr2.2:49289507-49289526 MS.gene55098:CDS 30.0%
ACTAAACCAGTTGGTTATAA+TGG - chr2.2:49288566-49288585 None:intergenic 30.0%
ATACTCTTATCTTCTAGACT+CGG + chr2.2:49288686-49288705 MS.gene55098:intron 30.0%
ATATTCAATTGCAGGTTCTT+GGG + chr2.2:49289309-49289328 MS.gene55098:intron 30.0%
ATGTGTGAAGTGAAGTAAAA+AGG - chr2.2:49288668-49288687 None:intergenic 30.0%
CTAAACCAGTTGGTTATAAT+GGG - chr2.2:49288565-49288584 None:intergenic 30.0%
CTGACATAATATTCAATTGC+AGG + chr2.2:49289301-49289320 MS.gene55098:intron 30.0%
TGTTTCTTCAAAACAGATTC+AGG - chr2.2:49287235-49287254 None:intergenic 30.0%
! CTAAGCTTTTGTTCATTATC+AGG + chr2.2:49287545-49287564 MS.gene55098:CDS 30.0%
! GCAAAATCTTCCTTGATTTT+GGG - chr2.2:49287898-49287917 None:intergenic 30.0%
! TAATTTTGCAGTGCTTATGT+TGG - chr2.2:49288250-49288269 None:intergenic 30.0%
! TGCAAAATCTTCCTTGATTT+TGG - chr2.2:49287899-49287918 None:intergenic 30.0%
! TTTAGCTTAGATATAAGGTG+TGG + chr2.2:49288594-49288613 MS.gene55098:intron 30.0%
!! GGTGCTATTATTATTGTTGA+AGG + chr2.2:49289245-49289264 MS.gene55098:intron 30.0%
!!! CTGTTTTGAAGAAACAGAAA+AGG + chr2.2:49287239-49287258 MS.gene55098:CDS 30.0%
!!! CTGTTTTGGAAAAATCATAG+AGG + chr2.2:49287692-49287711 MS.gene55098:intron 30.0%
!!! TCTCTTTAATTTTTGGCTTC+TGG + chr2.2:49288642-49288661 MS.gene55098:intron 30.0%
AATAATAGCACCACCATACA+CGG - chr2.2:49289237-49289256 None:intergenic 35.0%
AGAAATCACTATGTTGAAGG+TGG + chr2.2:49289461-49289480 MS.gene55098:CDS 35.0%
AGATAACTCTATCATCGAAC+AGG + chr2.2:49289007-49289026 MS.gene55098:CDS 35.0%
ATGAACAAAAGCTTAGCTTC+AGG - chr2.2:49287541-49287560 None:intergenic 35.0%
ATGCAATGCACCTTCAATTA+AGG + chr2.2:49288162-49288181 MS.gene55098:intron 35.0%
ATTCACCCATTATAACCAAC+TGG + chr2.2:49288557-49288576 MS.gene55098:intron 35.0%
ATTCATGAGATCCTTACTGT+TGG + chr2.2:49289362-49289381 MS.gene55098:CDS 35.0%
CAAAACAGATTCAGGAACAA+CGG - chr2.2:49287227-49287246 None:intergenic 35.0%
CAATAACAATTAACCCACAC+AGG - chr2.2:49287807-49287826 None:intergenic 35.0%
TCTCTGACACTCTTCAAATT+GGG - chr2.2:49288933-49288952 None:intergenic 35.0%
TGAATTGCTCCCTTAATTGA+AGG - chr2.2:49288175-49288194 None:intergenic 35.0%
TGCAATGCACCTTCAATTAA+GGG + chr2.2:49288163-49288182 MS.gene55098:intron 35.0%
TGTGTAATCGAATGAAAGCA+GGG - chr2.2:49289056-49289075 None:intergenic 35.0%
TGTTCATTATCAGGATCAGA+GGG + chr2.2:49287554-49287573 MS.gene55098:CDS 35.0%
TTCTCTGACACTCTTCAAAT+TGG - chr2.2:49288934-49288953 None:intergenic 35.0%
TTGAGCCATATGTTACCTAT+GGG + chr2.2:49288814-49288833 MS.gene55098:CDS 35.0%
TTGTTCATTATCAGGATCAG+AGG + chr2.2:49287553-49287572 MS.gene55098:CDS 35.0%
! TTCAGCAAAAGGAGTTGATT+AGG + chr2.2:49287473-49287492 MS.gene55098:intron 35.0%
!! TACAAGCTTGTTCTCTGTTT+TGG + chr2.2:49287678-49287697 MS.gene55098:intron 35.0%
AACAGAAAAGGAACGAGGAA+TGG + chr2.2:49287251-49287270 MS.gene55098:CDS 40.0%
AACAGTGAATATGCTCCACA+GGG + chr2.2:49288791-49288810 MS.gene55098:CDS 40.0%
AAGCGTGAAGCTAAGCTTAA+GGG + chr2.2:49287499-49287518 MS.gene55098:CDS 40.0%
AATGAGGAGAGATCCTATCT+AGG - chr2.2:49289102-49289121 None:intergenic 40.0%
ACAGAAAAGGAACGAGGAAT+GGG + chr2.2:49287252-49287271 MS.gene55098:CDS 40.0%
AGAGAATTGATCTACAAGCG+TGG + chr2.2:49288948-49288967 MS.gene55098:CDS 40.0%
ATAATAGCACCACCATACAC+GGG - chr2.2:49289236-49289255 None:intergenic 40.0%
ATGCTATGGACCCAAAATCA+AGG + chr2.2:49287885-49287904 MS.gene55098:CDS 40.0%
ATTGTGTTGTGTATCCTGTG+TGG + chr2.2:49287790-49287809 MS.gene55098:intron 40.0%
CTGTGTAATCGAATGAAAGC+AGG - chr2.2:49289057-49289076 None:intergenic 40.0%
GAAGAAACAGAAAAGGAACG+AGG + chr2.2:49287246-49287265 MS.gene55098:CDS 40.0%
GCATACCCATAGGTAACATA+TGG - chr2.2:49288822-49288841 None:intergenic 40.0%
GTTGAGCCATATGTTACCTA+TGG + chr2.2:49288813-49288832 MS.gene55098:CDS 40.0%
TAAGGGAGCAATTCATCTAC+TGG + chr2.2:49288180-49288199 MS.gene55098:intron 40.0%
TTAGACAAAGTCACGCAATC+TGG - chr2.2:49289191-49289210 None:intergenic 40.0%
TTCAAGCTCAAAGCTCCTTT+GGG + chr2.2:49289422-49289441 MS.gene55098:CDS 40.0%
TTGAGATTCTGCATACCCAT+AGG - chr2.2:49288832-49288851 None:intergenic 40.0%
TTGATCTACAAGCGTGGTTA+TGG + chr2.2:49288954-49288973 MS.gene55098:CDS 40.0%
TTGTGTTGTGTATCCTGTGT+GGG + chr2.2:49287791-49287810 MS.gene55098:intron 40.0%
TTTCAAGCTCAAAGCTCCTT+TGG + chr2.2:49289421-49289440 MS.gene55098:CDS 40.0%
! AACGGTTTTCACTTCCTCTT+TGG - chr2.2:49287209-49287228 None:intergenic 40.0%
! GTGGTTATGGAAAGGTTGAT+AGG + chr2.2:49288967-49288986 MS.gene55098:CDS 40.0%
! TTTTGCCTGCAGATCTTCAA+TGG + chr2.2:49288744-49288763 MS.gene55098:intron 40.0%
!! AAAGGAGCTTTGAGCTTGAA+AGG - chr2.2:49289422-49289441 None:intergenic 40.0%
!! CTAGACTCGGTGCAATTTAT+CGG + chr2.2:49288699-49288718 MS.gene55098:intron 40.0%
AGAAGAAGAGAGCTGAAACC+AGG + chr2.2:49287308-49287327 MS.gene55098:CDS 45.0%
AGACACCATTGAAGATCTGC+AGG - chr2.2:49288752-49288771 None:intergenic 45.0%
AGGAGAGATCCTATCTAGGT+TGG - chr2.2:49289098-49289117 None:intergenic 45.0%
CAACAGTGAATATGCTCCAC+AGG + chr2.2:49288790-49288809 MS.gene55098:CDS 45.0%
CTACAAGCGTGGTTATGGAA+AGG + chr2.2:49288959-49288978 MS.gene55098:CDS 45.0%
CTGAAACCAGGAAGCTTATC+TGG + chr2.2:49287320-49287339 MS.gene55098:CDS 45.0%
CTTTGAGCTTGAAAGGCCAT+AGG - chr2.2:49289415-49289434 None:intergenic 45.0%
GAAGCGTGAAGCTAAGCTTA+AGG + chr2.2:49287498-49287517 MS.gene55098:CDS 45.0%
GAGAGGCAAACAACTTCCTA+TGG + chr2.2:49289396-49289415 MS.gene55098:CDS 45.0%
GGAGAGATCCTATCTAGGTT+GGG - chr2.2:49289097-49289116 None:intergenic 45.0%
GGCTAAGTGTCTTCTACACT+TGG + chr2.2:49288201-49288220 MS.gene55098:intron 45.0%
GTACTCCTTAGCGTACTGTT+TGG - chr2.2:49287353-49287372 None:intergenic 45.0%
TAACATATGGCTCAACCCTG+TGG - chr2.2:49288809-49288828 None:intergenic 45.0%
TAGAGCCAAACAGTACGCTA+AGG + chr2.2:49287345-49287364 MS.gene55098:CDS 45.0%
TCGGTGCAATTTATCGGTGT+AGG + chr2.2:49288705-49288724 MS.gene55098:intron 45.0%
TCTACTCCAGATAAGCTTCC+TGG - chr2.2:49287329-49287348 None:intergenic 45.0%
TCTGGACTGTCTCATCAAGT+TGG - chr2.2:49289173-49289192 None:intergenic 45.0%
TGAACTGTCCCAACCTAGAT+AGG + chr2.2:49289086-49289105 MS.gene55098:intron 45.0%
TGAAGTGAGGTCCAACAGTA+AGG - chr2.2:49289376-49289395 None:intergenic 45.0%
TTCTTCTTCATGCCACCCAA+AGG - chr2.2:49289440-49289459 None:intergenic 45.0%
TTGCAGGTTCTTGGGAAACA+TGG + chr2.2:49289317-49289336 MS.gene55098:intron 45.0%
TTTGCAGTGCTTATGTTGGC+AGG - chr2.2:49288246-49288265 None:intergenic 45.0%
! TATGTTGAAGGTGGTGATGC+TGG + chr2.2:49289470-49289489 MS.gene55098:CDS 45.0%
!! ATGGGCATTGGTGAAGAAAC+AGG + chr2.2:49287270-49287289 MS.gene55098:CDS 45.0%
!! TTGTTTGCCTCTCTGAAGTG+AGG - chr2.2:49289389-49289408 None:intergenic 45.0%
!!! ATAAAATATTTTAATACAAT+GGG + chr2.2:49288409-49288428 MS.gene55098:intron 5.0%
!!! TATAAAATATTTTAATACAA+TGG + chr2.2:49288408-49288427 MS.gene55098:intron 5.0%
AAGCTCAAAGCTCCTTTGGG+TGG + chr2.2:49289425-49289444 MS.gene55098:CDS 50.0%
AAGGAACGAGGAATGGGCAT+TGG + chr2.2:49287258-49287277 MS.gene55098:CDS 50.0%
CGTGAAGCTAAGCTTAAGGG+TGG + chr2.2:49287502-49287521 MS.gene55098:CDS 50.0%
CTTGACCTATGTCCCGTGTA+TGG + chr2.2:49289221-49289240 MS.gene55098:intron 50.0%
TGTTGGACCTCACTTCAGAG+AGG + chr2.2:49289379-49289398 MS.gene55098:CDS 50.0%
! AAGGTGGTGATGCTGGTAAC+AGG + chr2.2:49289477-49289496 MS.gene55098:CDS 50.0%
! AGGTGGTGATGCTGGTAACA+GGG + chr2.2:49289478-49289497 MS.gene55098:CDS 50.0%
! CGCTAAGGAGTACGATGACT+CGG + chr2.2:49287360-49287379 MS.gene55098:CDS 50.0%
CACCACCATACACGGGACAT+AGG - chr2.2:49289229-49289248 None:intergenic 55.0%
GACCTATGTCCCGTGTATGG+TGG + chr2.2:49289224-49289243 MS.gene55098:intron 55.0%
GCAGCTTCTGCGATTGAGAC+AGG + chr2.2:49287916-49287935 MS.gene55098:CDS 55.0%
! TGGTGATGCTGGTAACAGGG+AGG + chr2.2:49289481-49289500 MS.gene55098:CDS 55.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 49287202 49289538 49287202 ID=MS.gene55098
chr2.2 mRNA 49287202 49289538 49287202 ID=MS.gene55098.t1;Parent=MS.gene55098
chr2.2 exon 49287202 49287381 49287202 ID=MS.gene55098.t1.exon1;Parent=MS.gene55098.t1
chr2.2 CDS 49287202 49287381 49287202 ID=cds.MS.gene55098.t1;Parent=MS.gene55098.t1
chr2.2 exon 49287478 49287575 49287478 ID=MS.gene55098.t1.exon2;Parent=MS.gene55098.t1
chr2.2 CDS 49287478 49287575 49287478 ID=cds.MS.gene55098.t1;Parent=MS.gene55098.t1
chr2.2 exon 49287880 49287937 49287880 ID=MS.gene55098.t1.exon3;Parent=MS.gene55098.t1
chr2.2 CDS 49287880 49287937 49287880 ID=cds.MS.gene55098.t1;Parent=MS.gene55098.t1
chr2.2 exon 49288756 49288835 49288756 ID=MS.gene55098.t1.exon4;Parent=MS.gene55098.t1
chr2.2 CDS 49288756 49288835 49288756 ID=cds.MS.gene55098.t1;Parent=MS.gene55098.t1
chr2.2 exon 49288926 49289028 49288926 ID=MS.gene55098.t1.exon5;Parent=MS.gene55098.t1
chr2.2 CDS 49288926 49289028 49288926 ID=cds.MS.gene55098.t1;Parent=MS.gene55098.t1
chr2.2 exon 49289323 49289538 49289323 ID=MS.gene55098.t1.exon6;Parent=MS.gene55098.t1
chr2.2 CDS 49289323 49289538 49289323 ID=cds.MS.gene55098.t1;Parent=MS.gene55098.t1
Gene Sequence

>MS.gene55098

ATGGCCAAAGAGGAAGTGAAAACCGTTGTTCCTGAATCTGTTTTGAAGAAACAGAAAAGGAACGAGGAATGGGCATTGGTGAAGAAACAGGATCAAGAATCAGCGAAGAAGAAGAGAGCTGAAACCAGGAAGCTTATCTGGAGTAGAGCCAAACAGTACGCTAAGGAGTACGATGACTCGGTAATCATTATCATTATAATGATTAAGTTAATCTAATTCGATTTAATCATTCATTTATTTATTGATTTGTTTGTTTGTTTAATTTGTGTGTTTCAGCAAAAGGAGTTGATTAGGTTGAAGCGTGAAGCTAAGCTTAAGGGTGGATTTTATGTTGATCCTGAAGCTAAGCTTTTGTTCATTATCAGGATCAGAGGGTATGTCATTATCTCTATTTTGTTTTACTTTTTTTTATACTAGATTAATTATGTTTTTAGTTTTCACCGAAATAAAACATGTTGTAAAATTATGTTTTTTTATACAAGCTTGTTCTCTGTTTTGGAAAAATCATAGAGGAAAAAAATGGATGCATTTAGATTATAAATTGAATACAATTTATGTAGGACTAAAAAGATATTTAACCCTATTATAATTGTGTTGTGTATCCTGTGTGGGTTAATTGTTATTGTTTATTATTATTATTTATTAATGGGAACTTTATAAATTTGTTTATAATTTCAGTATCAATGCTATGGACCCAAAATCAAGGAAGATTTTGCAGCTTCTGCGATTGAGACAGGTAATTCAGTTTTTTTTGAATTGGTTAGTAACTTTGTTTTAGTTGATGTATTTGTCGATGTCTGTATGTGTACCATTTAAAGTTATACTCACTTGTTGGTTTGTAGAAAAACTTGTATATTTGTTTTGTTACTTAATAAAATTGAATGCGATGCAATTCCGAATGCACTTTGCAATTTTTTTTTTGTGCTTCGTTAAGTTTTTGAAAGTGCTGCTTTTGATATCATGCAATGCACCTTCAATTAAGGGAGCAATTCATCTACTGGCTAAGTGTCTTCTACACTTGGTTATTTTTCATGTGATAAGCCTGCCAACATAAGCACTGCAAAATTACTCCTCTATCTAAATGTTTAATACATTAGAGTTTAAAGTTATTTTGCTTTTCACCCAAAAAACTTGTTTTTGCTTATTTGTAATGTTTAAGCTGTTCATCTATATAATATAAGAATGGTAGTTACTGAAATGAATGAATATAAAATATTTTAATACAATGGGTAATATCTTATGCATTGACTTTAGATATCTTGTTTGTATGTATATACTAAATACTAATTATTTGATACTGAGTAGGATTTGCCTGTATGATAACCTTTTACTTAACTATTGAAGCTTTTCATAGAATTCACCCATTATAACCAACTGGTTTAGTAAGTTTTTTTTAGCTTAGATATAAGGTGTGGTGTGCTGACTTTTTGACCTAGTATTTCTCTTTAATTTTTGGCTTCTGGCCTTTTTACTTCACTTCACACATACTCTTATCTTCTAGACTCGGTGCAATTTATCGGTGTAGGCTTATTCTTTTATTTGTTTTGCCTGCAGATCTTCAATGGTGTCTTTCTCAAAGTGAACAAAGCAACAGTGAATATGCTCCACAGGGTTGAGCCATATGTTACCTATGGGTATGCAGAATCTCAAATTATATGAAGTCTAGATTATAACTCATTATAACTCTGTATGGGTTCTTAATGCATGCTATTTTTTTTTATTAGTTATCCCAATTTGAAGAGTGTCAGAGAATTGATCTACAAGCGTGGTTATGGAAAGGTTGATAGGCAGAGAATTGCTTTGACAGATAACTCTATCATCGAACAGGTCTGTCTTTGATTAGTACACTTTCCCTGCTTTCATTCGATTACACAGTTGTCAATCTGAACTGTCCCAACCTAGATAGGATCTCTCCTCATTTTGACTTTGTATTTTACCCAAATTTTCAAAGTTAGAATCTGAGCTGTTCCAACTTGATGAGACAGTCCAGATTGCGTGACTTTGTCTAATGTGTGATTTCTTGACCTATGTCCCGTGTATGGTGGTGCTATTATTATTGTTGAAGGTTATGTTGCCAGTTATTTTTTTCTATTTTGCGTCTGACATAATATTCAATTGCAGGTTCTTGGGAAACATGGTATCATTTGCATTGAAGATCTCATTCATGAGATCCTTACTGTTGGACCTCACTTCAGAGAGGCAAACAACTTCCTATGGCCTTTCAAGCTCAAAGCTCCTTTGGGTGGCATGAAGAAGAAAAGAAATCACTATGTTGAAGGTGGTGATGCTGGTAACAGGGAGGACTACATCAATGAACTCATTAGAAGGATGAATTAG
Protein sequence

>MS.gene55098.t1

MAKEEVKTVVPESVLKKQKRNEEWALVKKQDQESAKKKRAETRKLIWSRAKQYAKEYDDSQKELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAMDPKSRKILQLLRLRQIFNGVFLKVNKATVNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKVDRQRIALTDNSIIEQVLGKHGIICIEDLIHEILTVGPHFREANNFLWPFKLKAPLGGMKKKRNHYVEGGDAGNREDYINELIRRMN