AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene034157

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene034157.t1 MTR_4g008160 97.942 243 5 0 1 243 1 243 8.86e-177 485
MS.gene034157.t1 MTR_1g022385 87.552 241 30 0 3 243 35 275 3.56e-158 439
MS.gene034157.t1 MTR_2g038250 86.722 241 32 0 3 243 4 244 3.56e-157 436
MS.gene034157.t1 MTR_7g059170 46.809 235 124 1 9 243 13 246 1.36e-73 224
MS.gene034157.t1 MTR_1g022375 62.745 102 38 0 132 233 55 156 7.12e-39 132
MS.gene034157.t1 MTR_1g108785 58.621 58 18 4 184 235 2 59 2.09e-12 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene034157.t1 AT3G13580 85.000 240 36 0 4 243 5 244 4.45e-155 431
MS.gene034157.t1 AT3G13580 85.000 240 36 0 4 243 5 244 4.45e-155 431
MS.gene034157.t1 AT3G13580 85.000 240 36 0 4 243 5 244 4.45e-155 431
MS.gene034157.t1 AT3G13580 85.000 240 36 0 4 243 5 244 4.45e-155 431
MS.gene034157.t1 AT3G13580 85.000 240 36 0 4 243 5 244 4.45e-155 431
MS.gene034157.t1 AT3G13580 85.000 240 36 0 4 243 5 244 4.45e-155 431
MS.gene034157.t1 AT3G13580 85.000 240 36 0 4 243 5 244 4.45e-155 431
MS.gene034157.t1 AT3G13580 85.000 240 36 0 4 243 5 244 4.45e-155 431
MS.gene034157.t1 AT3G13580 85.000 240 36 0 4 243 5 244 4.45e-155 431
MS.gene034157.t1 AT2G01250 85.833 240 34 0 4 243 3 242 1.05e-153 427
MS.gene034157.t1 AT2G44120 82.083 240 43 0 4 243 3 242 8.08e-148 412
MS.gene034157.t1 AT2G44120 82.083 240 43 0 4 243 8 247 1.14e-147 412
MS.gene034157.t1 AT2G01250 80.571 175 34 0 4 178 3 177 2.69e-98 285
MS.gene034157.t1 AT1G80750 42.623 244 137 2 3 243 4 247 1.13e-60 191

Find 59 sgRNAs with CRISPR-Local

Find 130 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTTGCTTTGTTAACTTTA+AGG 0.072962 4.3:+87244682 None:intergenic
TCCCTTACACTCTTCAAATT+TGG 0.097727 4.3:+87244528 None:intergenic
GTTGAGCCTTATGTGACTTA+TGG 0.277993 4.3:-87244642 MS.gene034157:CDS
CCCTTACACTCTTCAAATTT+GGG 0.292487 4.3:+87244529 None:intergenic
TTGAGCCTTATGTGACTTAT+GGG 0.362158 4.3:-87244641 MS.gene034157:intron
CTGTGTTGAAGAAGCAGAAC+AGG 0.363263 4.3:-87246196 MS.gene034157:CDS
CCTTTGGCCGTTCAAGCTTA+AGG 0.366667 4.3:-87244251 MS.gene034157:CDS
AGGAAGCAAACAACTTCCTT+TGG 0.396409 4.3:-87244267 MS.gene034157:CDS
GACTGTTGGACCACATTTCA+AGG 0.408463 4.3:-87244287 MS.gene034157:CDS
ACCCAAATTTGAAGAGTGTA+AGG 0.411117 4.3:-87244530 MS.gene034157:CDS
ATTACATCAATGAGCTCATC+AGG 0.421060 4.3:-87244159 MS.gene034157:CDS
CTCATCTACAAACGTGGGTA+TGG 0.426956 4.3:-87244504 MS.gene034157:CDS
TTTCCTTGTCTTGGGGTCCA+TGG 0.427816 4.3:+87244971 None:intergenic
GAGAACCGTAAGCTGATCTA+TGG 0.446007 4.3:-87246113 MS.gene034157:CDS
GTTCAAGCTTAAGGCTCCAT+TGG 0.447908 4.3:-87244242 MS.gene034157:CDS
TTCTCAAGAGTATGTGGATA+AGG 0.453623 4.3:-87246075 MS.gene034157:intron
TATGTTGAAGGCGGTGATGC+TGG 0.455644 4.3:-87244193 MS.gene034157:CDS
CAGGGAAGAACAATGGGCTT+TGG 0.464957 4.3:-87246177 MS.gene034157:CDS
ACCGTAAGCTGATCTATGGC+AGG 0.465539 4.3:-87246109 MS.gene034157:CDS
GTGGGTATGGAAAGCTAGAC+AGG 0.468462 4.3:-87244491 MS.gene034157:CDS
TTTGATGACCCTCAGGGACT+GGG 0.469200 4.3:-87244355 MS.gene034157:intron
TTCAAGCTTAAGGCTCCATT+GGG 0.471133 4.3:-87244241 MS.gene034157:CDS
GCAACTGTTTCGATTGAGAC+AGG 0.474956 4.3:-87244943 MS.gene034157:intron
ATAAACAAGAGCTTGGCCTC+TGG 0.475047 4.3:+87245860 None:intergenic
GCAGAACAGGGAAGAACAAT+GGG 0.492072 4.3:-87246183 MS.gene034157:CDS
TGCTTCTTCAACACAGACTC+AGG 0.496291 4.3:+87246203 None:intergenic
GCGAATAATAAACAAGAGCT+TGG 0.498068 4.3:+87245853 None:intergenic
CCCTGCCATAGATCAGCTTA+CGG 0.515436 4.3:+87246108 None:intergenic
CAACAATGAACATGTTGCAC+AGG 0.520606 4.3:-87244665 MS.gene034157:CDS
AAGAGGAACCACTATGTTGA+AGG 0.523907 4.3:-87244205 MS.gene034157:CDS
GCAGTATTCTCAAGAGTATG+TGG 0.528099 4.3:-87246081 MS.gene034157:CDS
AAGCTTAAGGCTCCATTGGG+TGG 0.532905 4.3:-87244238 MS.gene034157:CDS
ACATACCCATAAGTCACATA+AGG 0.533172 4.3:+87244636 None:intergenic
ATCCACGAGATCTTGACTGT+TGG 0.544552 4.3:-87244301 MS.gene034157:CDS
TTCTTCTTTAAGCCACCCAA+TGG 0.546850 4.3:+87244226 None:intergenic
TGACAACTCAATTATTGAGC+AGG 0.556335 4.3:-87244451 MS.gene034157:intron
CCTCAGGGACTGGGAAAGCA+TGG 0.559473 4.3:-87244346 MS.gene034157:intron
TTGTTTATTATTCGCATACG+AGG 0.561538 4.3:-87245845 MS.gene034157:CDS
AGCAGAACAGGGAAGAACAA+TGG 0.564767 4.3:-87246184 MS.gene034157:CDS
TTGTTTGCTTCCTTGAAATG+TGG 0.570988 4.3:+87244277 None:intergenic
GGATAAGATCTTCAATGCAT+AGG 0.579833 4.3:+87244320 None:intergenic
AAGCGTGAGGCTAAGCTGAA+AGG 0.580752 4.3:-87245899 MS.gene034157:CDS
CCTTAAGCTTGAACGGCCAA+AGG 0.585766 4.3:+87244251 None:intergenic
GTTGATTAGTTTGAAGCGTG+AGG 0.590721 4.3:-87245912 MS.gene034157:CDS
AATGGAGCCTTAAGCTTGAA+CGG 0.593439 4.3:+87244244 None:intergenic
GTCCAACAGTCAAGATCTCG+TGG 0.596847 4.3:+87244299 None:intergenic
CATCACCGCCTTCAACATAG+TGG 0.607669 4.3:+87244197 None:intergenic
ATAATTGAGTTGTCAGTGAG+AGG 0.608273 4.3:+87244459 None:intergenic
TGGGTGGCTTAAAGAAGAAG+AGG 0.609725 4.3:-87244222 MS.gene034157:CDS
CGTGAGGCTAAGCTGAAAGG+TGG 0.613387 4.3:-87245896 MS.gene034157:CDS
CCCAAATTTGAAGAGTGTAA+GGG 0.616996 4.3:-87244529 MS.gene034157:CDS
ATGCCATGGACCCCAAGACA+AGG 0.632973 4.3:-87244974 MS.gene034157:CDS
TGTTTATTATTCGCATACGA+GGG 0.644515 4.3:-87245844 MS.gene034157:intron
TGTGTTGAAGAAGCAGAACA+GGG 0.649087 4.3:-87246195 MS.gene034157:CDS
AACAATGAACATGTTGCACA+GGG 0.654102 4.3:-87244664 MS.gene034157:CDS
CCGTAAGCTGATCTATGGCA+GGG 0.654899 4.3:-87246108 MS.gene034157:CDS
AGGGAACTCATCTACAAACG+TGG 0.682905 4.3:-87244510 MS.gene034157:CDS
GGGAACTCATCTACAAACGT+GGG 0.687591 4.3:-87244509 MS.gene034157:CDS
AGGAACCACTATGTTGAAGG+CGG 0.698307 4.3:-87244202 MS.gene034157:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTTCTTTACAAAATTTAATA+AGG - chr4.3:87245068-87245087 MS.gene034157:intron 15.0%
!! TAACGAGTTTAATAGAAATA+TGG - chr4.3:87244909-87244928 MS.gene034157:intron 20.0%
!! TGAAAAATCAATCAATAGTA+AGG + chr4.3:87245377-87245396 None:intergenic 20.0%
!!! GGTTTTGTTTTTTATTTTGT+AGG - chr4.3:87244435-87244454 MS.gene034157:intron 20.0%
!!! TTTGGTTTTTTTTAGTTGTT+CGG - chr4.3:87244353-87244372 MS.gene034157:intron 20.0%
! AAGCCTAACAAATTTAAATG+AGG + chr4.3:87245491-87245510 None:intergenic 25.0%
! AGTACTTATAGTAGAAAAGA+CGG - chr4.3:87244732-87244751 MS.gene034157:intron 25.0%
! ATCTCTTGATCTTTCTTAAT+AGG + chr4.3:87244889-87244908 None:intergenic 25.0%
! CACTTAATTCAATTTCATGT+TGG + chr4.3:87244619-87244638 None:intergenic 25.0%
! TTCTAAACAATAAGAGAAAC+TGG + chr4.3:87245214-87245233 None:intergenic 25.0%
!! TCACCTCATTTAAATTTGTT+AGG - chr4.3:87245485-87245504 MS.gene034157:intron 25.0%
!! TTCTTCTTCTATAAGTGTTT+TGG - chr4.3:87245304-87245323 MS.gene034157:intron 25.0%
!!! ATTTTTCAGTATTAATGCCA+TGG - chr4.3:87245389-87245408 MS.gene034157:intron 25.0%
!!! CTTTCTTCGTATTGATTTAA+AGG - chr4.3:87245771-87245790 MS.gene034157:intron 25.0%
!!! TTGTTGCTTTGTTAACTTTA+AGG + chr4.3:87245698-87245717 None:intergenic 25.0%
AAAACATCTAAGAAGACAAC+TGG + chr4.3:87245341-87245360 None:intergenic 30.0%
AAACATCTAAGAAGACAACT+GGG + chr4.3:87245340-87245359 None:intergenic 30.0%
AATTAAGTGTAGTAGAGATG+AGG - chr4.3:87244630-87244649 MS.gene034157:intron 30.0%
ATGAATCATAGACTTCTCAA+AGG + chr4.3:87245573-87245592 None:intergenic 30.0%
GAAACTAGACTTATGTGATT+TGG - chr4.3:87244757-87244776 MS.gene034157:intron 30.0%
GATAAAGACTAGACAAGATA+GGG - chr4.3:87244671-87244690 MS.gene034157:CDS 30.0%
TGAAACAATTGAGACGTAAA+TGG - chr4.3:87245139-87245158 MS.gene034157:intron 30.0%
TGATAAAGACTAGACAAGAT+AGG - chr4.3:87244670-87244689 MS.gene034157:CDS 30.0%
TGTTTATTATTCGCATACGA+GGG - chr4.3:87244533-87244552 MS.gene034157:CDS 30.0%
TTGTTTATTATTCGCATACG+AGG - chr4.3:87244532-87244551 MS.gene034157:CDS 30.0%
TTGTTTGTATAAGAGCAGTT+TGG - chr4.3:87245630-87245649 MS.gene034157:intron 30.0%
! AGTTGTCTTCTTAGATGTTT+TGG - chr4.3:87245340-87245359 MS.gene034157:intron 30.0%
! ATTTTCCTTCAACACTCAAA+AGG - chr4.3:87245804-87245823 MS.gene034157:intron 30.0%
! GCTCATTGATGTAATTTTCA+CGG + chr4.3:87246213-87246232 None:intergenic 30.0%
! GTTTTTGATGAAGTTATACG+AGG - chr4.3:87245109-87245128 MS.gene034157:intron 30.0%
! TGCAAAATTTTCCTTGTCTT+GGG + chr4.3:87245417-87245436 None:intergenic 30.0%
! TTGCAAAATTTTCCTTGTCT+TGG + chr4.3:87245418-87245437 None:intergenic 30.0%
! TTTGCTCAACAGATTTTCAA+TGG - chr4.3:87245666-87245685 MS.gene034157:intron 30.0%
!!! ATTTTAGAGCAACTGTATAC+TGG - chr4.3:87245601-87245620 MS.gene034157:intron 30.0%
!!! TGTTTTGTGTTGATTCAGAT+TGG - chr4.3:87244568-87244587 MS.gene034157:intron 30.0%
AACAATGAACATGTTGCACA+GGG - chr4.3:87245713-87245732 MS.gene034157:intron 35.0%
AACATTAGACTAGAGAGAGT+TGG - chr4.3:87244705-87244724 MS.gene034157:intron 35.0%
ACATACCCATAAGTCACATA+AGG + chr4.3:87245744-87245763 None:intergenic 35.0%
ACATTAGACTAGAGAGAGTT+GGG - chr4.3:87244706-87244725 MS.gene034157:intron 35.0%
ACTTATAGTAGAAAAGACGG+TGG - chr4.3:87244735-87244754 MS.gene034157:intron 35.0%
AGTCAAATCACTAGATGTAG+AGG - chr4.3:87244838-87244857 MS.gene034157:intron 35.0%
ATCTGTTGAGCAAACACATA+AGG + chr4.3:87245660-87245679 None:intergenic 35.0%
ATTACATCAATGAGCTCATC+AGG - chr4.3:87246218-87246237 MS.gene034157:CDS 35.0%
CCCTTACACTCTTCAAATTT+GGG + chr4.3:87245851-87245870 None:intergenic 35.0%
CGGATTTATAGTGATAGTTC+TGG - chr4.3:87244373-87244392 MS.gene034157:intron 35.0%
CTCACTAATCAATTGTGTTG+TGG - chr4.3:87244414-87244433 MS.gene034157:intron 35.0%
GCGAATAATAAACAAGAGCT+TGG + chr4.3:87244527-87244546 None:intergenic 35.0%
GGATAAGATCTTCAATGCAT+AGG + chr4.3:87246060-87246079 None:intergenic 35.0%
TCCCTTACACTCTTCAAATT+TGG + chr4.3:87245852-87245871 None:intergenic 35.0%
TGACAACTCAATTATTGAGC+AGG - chr4.3:87245926-87245945 MS.gene034157:intron 35.0%
TTGTTTGCTTCCTTGAAATG+TGG + chr4.3:87246103-87246122 None:intergenic 35.0%
! ACCCAAATTTGAAGAGTGTA+AGG - chr4.3:87245847-87245866 MS.gene034157:CDS 35.0%
! ATAATTGAGTTGTCAGTGAG+AGG + chr4.3:87245921-87245940 None:intergenic 35.0%
! CCCAAATTTGAAGAGTGTAA+GGG - chr4.3:87245848-87245867 MS.gene034157:CDS 35.0%
! GCAAAATTTTCCTTGTCTTG+GGG + chr4.3:87245416-87245435 None:intergenic 35.0%
! TCAGATTGGATTAGAGTGTT+AGG - chr4.3:87244582-87244601 MS.gene034157:intron 35.0%
! TGGATTTTATGTTGATCCAG+AGG - chr4.3:87244501-87244520 MS.gene034157:CDS 35.0%
! TTCTCAAGAGTATGTGGATA+AGG - chr4.3:87244302-87244321 MS.gene034157:CDS 35.0%
! TTGAGCCTTATGTGACTTAT+GGG - chr4.3:87245736-87245755 MS.gene034157:intron 35.0%
AAGAGGAACCACTATGTTGA+AGG - chr4.3:87246172-87246191 MS.gene034157:CDS 40.0%
AATGGAGCCTTAAGCTTGAA+CGG + chr4.3:87246136-87246155 None:intergenic 40.0%
AGGAAGCAAACAACTTCCTT+TGG - chr4.3:87246110-87246129 MS.gene034157:CDS 40.0%
AGGAGAGTAGATTAGACAAC+AGG - chr4.3:87244814-87244833 MS.gene034157:intron 40.0%
ATTAGACTAGAGAGAGTTGG+GGG - chr4.3:87244708-87244727 MS.gene034157:intron 40.0%
CAAAGCAAGTCAGCAACATA+TGG + chr4.3:87246006-87246025 None:intergenic 40.0%
CAACAATGAACATGTTGCAC+AGG - chr4.3:87245712-87245731 MS.gene034157:intron 40.0%
CATTAGACTAGAGAGAGTTG+GGG - chr4.3:87244707-87244726 MS.gene034157:intron 40.0%
CCTAATCCAATCTGAATCGA+CGG + chr4.3:87245019-87245038 None:intergenic 40.0%
CTTATCCCACTAAGTGAGAT+CGG + chr4.3:87244974-87244993 None:intergenic 40.0%
GGAGAGTAGATTAGACAACA+GGG - chr4.3:87244815-87244834 MS.gene034157:intron 40.0%
TCACTTAGTGGGATAAGGTT+TGG - chr4.3:87244977-87244996 MS.gene034157:CDS 40.0%
TGTGTTGAAGAAGCAGAACA+GGG - chr4.3:87244182-87244201 MS.gene034157:CDS 40.0%
TTCAAGCTTAAGGCTCCATT+GGG - chr4.3:87246136-87246155 MS.gene034157:CDS 40.0%
TTCTTCTTTAAGCCACCCAA+TGG + chr4.3:87246154-87246173 None:intergenic 40.0%
! GCAGTATTCTCAAGAGTATG+TGG - chr4.3:87244296-87244315 MS.gene034157:CDS 40.0%
! GTTGAGCCTTATGTGACTTA+TGG - chr4.3:87245735-87245754 MS.gene034157:intron 40.0%
!! ATAAGGCGTTGTTAGCTTAG+CGG - chr4.3:87245085-87245104 MS.gene034157:intron 40.0%
!! CGTCGATTCAGATTGGATTA+GGG - chr4.3:87245017-87245036 MS.gene034157:intron 40.0%
!! GTTGATTAGTTTGAAGCGTG+AGG - chr4.3:87244465-87244484 MS.gene034157:CDS 40.0%
!!! GAAAGCCTTTTGAGTGTTGA+AGG + chr4.3:87245812-87245831 None:intergenic 40.0%
ACATGTAGAGTGAAGACCTG+TGG - chr4.3:87244780-87244799 MS.gene034157:intron 45.0%
ACCCAACTAGAAACACGACA+AGG + chr4.3:87245525-87245544 None:intergenic 45.0%
ACTAAGTGAGATCGGCTACA+TGG + chr4.3:87244966-87244985 None:intergenic 45.0%
AGCAGAACAGGGAAGAACAA+TGG - chr4.3:87244193-87244212 MS.gene034157:CDS 45.0%
AGGAACCACTATGTTGAAGG+CGG - chr4.3:87246175-87246194 MS.gene034157:CDS 45.0%
AGGGAACTCATCTACAAACG+TGG - chr4.3:87245867-87245886 MS.gene034157:CDS 45.0%
ATAAACAAGAGCTTGGCCTC+TGG + chr4.3:87244520-87244539 None:intergenic 45.0%
ATCCACGAGATCTTGACTGT+TGG - chr4.3:87246076-87246095 MS.gene034157:CDS 45.0%
ATGTAGCCGATCTCACTTAG+TGG - chr4.3:87244965-87244984 MS.gene034157:CDS 45.0%
CGATCTCACTTAGTGGGATA+AGG - chr4.3:87244972-87244991 MS.gene034157:CDS 45.0%
CTCATCTACAAACGTGGGTA+TGG - chr4.3:87245873-87245892 MS.gene034157:CDS 45.0%
CTCCTTGCTACAAAATCCAC+AGG + chr4.3:87244799-87244818 None:intergenic 45.0%
CTGTGTTGAAGAAGCAGAAC+AGG - chr4.3:87244181-87244200 MS.gene034157:CDS 45.0%
GACTGTTGGACCACATTTCA+AGG - chr4.3:87246090-87246109 MS.gene034157:CDS 45.0%
GAGAACCGTAAGCTGATCTA+TGG - chr4.3:87244264-87244283 MS.gene034157:CDS 45.0%
GCAACTGTTTCGATTGAGAC+AGG - chr4.3:87245434-87245453 MS.gene034157:intron 45.0%
GCAGAACAGGGAAGAACAAT+GGG - chr4.3:87244194-87244213 MS.gene034157:CDS 45.0%
GGGAACTCATCTACAAACGT+GGG - chr4.3:87245868-87245887 MS.gene034157:CDS 45.0%
GTTCAAGCTTAAGGCTCCAT+TGG - chr4.3:87246135-87246154 MS.gene034157:CDS 45.0%
TGCTTCTTCAACACAGACTC+AGG + chr4.3:87244177-87244196 None:intergenic 45.0%
TGGGTGGCTTAAAGAAGAAG+AGG - chr4.3:87246155-87246174 MS.gene034157:CDS 45.0%
TGTAGCCGATCTCACTTAGT+GGG - chr4.3:87244966-87244985 MS.gene034157:CDS 45.0%
! ACTTGCTTTGATGACCCTCA+GGG - chr4.3:87246016-87246035 MS.gene034157:intron 45.0%
! GACCTGTGGATTTTGTAGCA+AGG - chr4.3:87244794-87244813 MS.gene034157:intron 45.0%
!! CCGTCGATTCAGATTGGATT+AGG - chr4.3:87245016-87245035 MS.gene034157:intron 45.0%
!! GCCTTGTCGTGTTTCTAGTT+GGG - chr4.3:87245521-87245540 MS.gene034157:intron 45.0%
!! TGCCTTGTCGTGTTTCTAGT+TGG - chr4.3:87245520-87245539 MS.gene034157:intron 45.0%
!! TGTTGTCCGTCGATTCAGAT+TGG - chr4.3:87245010-87245029 MS.gene034157:intron 45.0%
AAGCGTGAGGCTAAGCTGAA+AGG - chr4.3:87244478-87244497 MS.gene034157:CDS 50.0%
AAGCTTAAGGCTCCATTGGG+TGG - chr4.3:87246139-87246158 MS.gene034157:CDS 50.0%
ACCGTAAGCTGATCTATGGC+AGG - chr4.3:87244268-87244287 MS.gene034157:CDS 50.0%
CATCACCGCCTTCAACATAG+TGG + chr4.3:87246183-87246202 None:intergenic 50.0%
CCCTGCCATAGATCAGCTTA+CGG + chr4.3:87244272-87244291 None:intergenic 50.0%
CCGTAAGCTGATCTATGGCA+GGG - chr4.3:87244269-87244288 MS.gene034157:CDS 50.0%
CCTTAAGCTTGAACGGCCAA+AGG + chr4.3:87246129-87246148 None:intergenic 50.0%
CCTTTGGCCGTTCAAGCTTA+AGG - chr4.3:87246126-87246145 MS.gene034157:CDS 50.0%
GTCACTGCAGTGCTCTTGTT+TGG - chr4.3:87244335-87244354 MS.gene034157:CDS 50.0%
GTCCAACAGTCAAGATCTCG+TGG + chr4.3:87246081-87246100 None:intergenic 50.0%
GTGGGTATGGAAAGCTAGAC+AGG - chr4.3:87245886-87245905 MS.gene034157:CDS 50.0%
TATGTTGAAGGCGGTGATGC+TGG - chr4.3:87246184-87246203 MS.gene034157:CDS 50.0%
TTTCCTTGTCTTGGGGTCCA+TGG + chr4.3:87245409-87245428 None:intergenic 50.0%
! CAGGGAAGAACAATGGGCTT+TGG - chr4.3:87244200-87244219 MS.gene034157:CDS 50.0%
! GACTTGCTTTGATGACCCTC+AGG - chr4.3:87246015-87246034 MS.gene034157:intron 50.0%
! TTTGATGACCCTCAGGGACT+GGG - chr4.3:87246022-87246041 MS.gene034157:intron 50.0%
ATGCCATGGACCCCAAGACA+AGG - chr4.3:87245403-87245422 MS.gene034157:intron 55.0%
CATGCTTTCCCAGTCCCTGA+GGG + chr4.3:87246033-87246052 None:intergenic 55.0%
CGTGAGGCTAAGCTGAAAGG+TGG - chr4.3:87244481-87244500 MS.gene034157:CDS 55.0%
! CTTTGATGACCCTCAGGGAC+TGG - chr4.3:87246021-87246040 MS.gene034157:intron 55.0%
CCATGCTTTCCCAGTCCCTG+AGG + chr4.3:87246034-87246053 None:intergenic 60.0%
CCTCAGGGACTGGGAAAGCA+TGG - chr4.3:87246031-87246050 MS.gene034157:intron 60.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 87244147 87246252 87244147 ID=MS.gene034157
chr4.3 mRNA 87244147 87246252 87244147 ID=MS.gene034157.t1;Parent=MS.gene034157
chr4.3 exon 87246076 87246252 87246076 ID=MS.gene034157.t1.exon1;Parent=MS.gene034157.t1
chr4.3 CDS 87246076 87246252 87246076 ID=cds.MS.gene034157.t1;Parent=MS.gene034157.t1
chr4.3 exon 87245845 87245942 87245845 ID=MS.gene034157.t1.exon2;Parent=MS.gene034157.t1
chr4.3 CDS 87245845 87245942 87245845 ID=cds.MS.gene034157.t1;Parent=MS.gene034157.t1
chr4.3 exon 87244944 87245001 87244944 ID=MS.gene034157.t1.exon3;Parent=MS.gene034157.t1
chr4.3 CDS 87244944 87245001 87244944 ID=cds.MS.gene034157.t1;Parent=MS.gene034157.t1
chr4.3 exon 87244642 87244721 87244642 ID=MS.gene034157.t1.exon4;Parent=MS.gene034157.t1
chr4.3 CDS 87244642 87244721 87244642 ID=cds.MS.gene034157.t1;Parent=MS.gene034157.t1
chr4.3 exon 87244452 87244554 87244452 ID=MS.gene034157.t1.exon5;Parent=MS.gene034157.t1
chr4.3 CDS 87244452 87244554 87244452 ID=cds.MS.gene034157.t1;Parent=MS.gene034157.t1
chr4.3 exon 87244147 87244362 87244147 ID=MS.gene034157.t1.exon6;Parent=MS.gene034157.t1
chr4.3 CDS 87244147 87244362 87244147 ID=cds.MS.gene034157.t1;Parent=MS.gene034157.t1
Gene Sequence

>MS.gene034157

ATGGGTGAAGAAGTGAAATCTATTGTTCCTGAGTCTGTGTTGAAGAAGCAGAACAGGGAAGAACAATGGGCTTTGGCTAAAACTCAAGAATTTGAAGCTGCTAAGAAGAAAAGAGCTGAGAACCGTAAGCTGATCTATGGCAGGGCTAAGCAGTATTCTCAAGAGTATGTGGATAAGGTACTTGTAATGTCACTGCAGTGCTCTTGTTTGGTTTTTTTTAGTTGTTCGGATTTATAGTGATAGTTCTGGATATTGATTACGTTATTGCTCACTAATCAATTGTGTTGTGGTTTTGTTTTTTATTTTGTAGGAAAGAGAGTTGATTAGTTTGAAGCGTGAGGCTAAGCTGAAAGGTGGATTTTATGTTGATCCAGAGGCCAAGCTCTTGTTTATTATTCGCATACGAGGGTACGTTTATTTTTGTTTTGTGTTGATTCAGATTGGATTAGAGTGTTAGGCTGTAAAAGAACCAACATGAAATTGAATTAAGTGTAGTAGAGATGAGGATATTGCGTTGCATGTGTGATAAAGACTAGACAAGATAGGGTTATAAATGACAACATTAGACTAGAGAGAGTTGGGGGTAGTACTTATAGTAGAAAAGACGGTGGAAACTAGACTTATGTGATTTGGACATGTAGAGTGAAGACCTGTGGATTTTGTAGCAAGGAGAGTAGATTAGACAACAGGGAGTCAAATCACTAGATGTAGAGGAAGATTTATATAAACTATACGAGAACCTATTAAGAAAGATCAAGAGATTAACGAGTTTAATAGAAATATGGTATTTGATAGAATAGTATGTTGTTGTTTGATCCATGTAGCCGATCTCACTTAGTGGGATAAGGTTTGGTTGTTATTGCTGTTGTCCGTCGATTCAGATTGGATTAGGGATGCTAGTTGAGTTGAAATAAGTTTTTTGTTCTTTACAAAATTTAATAAGGCGTTGTTAGCTTAGCGGTGTTTTTGATGAAGTTATACGAGGTAGCTTTTGAAACAATTGAGACGTAAATGGCATTTTTAATCAATTAATAAAAAAGCTCATCTTTATAGTTTGTTCTTTACCAGTTTCTCTTATTGTTTAGAATGTGAATAACTCAGTTTTATTTTATATTGTTCTGTAGATTATTACTATTACTATAATGCTCTCTTAATATTTCTTCTTCTATAAGTGTTTTGGATATGTTTATCCCAGTTGTCTTCTTAGATGTTTTGGTGTTCTGATTGCCTTACTATTGATTGATTTTTCAGTATTAATGCCATGGACCCCAAGACAAGGAAAATTTTGCAACTGTTTCGATTGAGACAGGTAATATTTGTTTTCAGCAGATACTGATATCACCTCATTTAAATTTGTTAGGCTTTGAAGAAATTGCCTTGTCGTGTTTCTAGTTGGGTAATACAATTGTAATACATTGTATGTCCTTTGAGAAGTCTATGATTCATTGTATAGCATTTTAGAGCAACTGTATACTGGATATTTTTGTTTGTATAAGAGCAGTTTGGTGATCCTTATGTGTTTGCTCAACAGATTTTCAATGGTGTTTTCCTTAAAGTTAACAAAGCAACAATGAACATGTTGCACAGGGTTGAGCCTTATGTGACTTATGGGTATGTTAGTTAACTTTCTTCGTATTGATTTAAAGGCAATGATTCTATTTTCCTTCAACACTCAAAAGGCTTTCAATATTGTCTTAGATACCCAAATTTGAAGAGTGTAAGGGAACTCATCTACAAACGTGGGTATGGAAAGCTAGACAGGCAGCGAACTCCTCTCACTGACAACTCAATTATTGAGCAGGTGCAGTAATTTACTTTTCTAAATTAAAAGAAATATTACTATTCGAGTTTGTTCACCATATGTTGCTGACTTGCTTTGATGACCCTCAGGGACTGGGAAAGCATGGTATCCTATGCATTGAAGATCTTATCCACGAGATCTTGACTGTTGGACCACATTTCAAGGAAGCAAACAACTTCCTTTGGCCGTTCAAGCTTAAGGCTCCATTGGGTGGCTTAAAGAAGAAGAGGAACCACTATGTTGAAGGCGGTGATGCTGGAAACCGTGAAAATTACATCAATGAGCTCATCAGGAGAATGAATTAA
Protein sequence

>MS.gene034157.t1

MGEEVKSIVPESVLKKQNREEQWALAKTQEFEAAKKKRAENRKLIYGRAKQYSQEYVDKERELISLKREAKLKGGFYVDPEAKLLFIIRIRGINAMDPKTRKILQLFRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDRQRTPLTDNSIIEQGLGKHGILCIEDLIHEILTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN