Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034156.t1 | XP_013454579.1 | 97.9 | 243 | 5 | 0 | 1 | 243 | 1 | 243 | 1.70E-130 | 475.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034156.t1 | Q9LHP1 | 85.0 | 240 | 36 | 0 | 4 | 243 | 5 | 244 | 4.0e-117 | 422.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034156.t1 | A0A072URW1 | 97.9 | 243 | 5 | 0 | 1 | 243 | 1 | 243 | 1.2e-130 | 475.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene034156 | MS.gene56166 | PPI |
| MS.gene034156 | MS.gene034157 | PPI |
| MS.gene034156 | MS.gene64512 | PPI |
| MS.gene09845 | MS.gene034156 | PPI |
| MS.gene034156 | MS.gene26979 | PPI |
| MS.gene034156 | MS.gene24260 | PPI |
| MS.gene037074 | MS.gene034156 | PPI |
| MS.gene034156 | MS.gene054580 | PPI |
| MS.gene034156 | MS.gene65129 | PPI |
| MS.gene66047 | MS.gene034156 | PPI |
| MS.gene018553 | MS.gene034156 | PPI |
| MS.gene034156 | MS.gene39294 | PPI |
| MS.gene78232 | MS.gene034156 | PPI |
| MS.gene45646 | MS.gene034156 | PPI |
| MS.gene26979 | MS.gene034156 | PPI |
| MS.gene050985 | MS.gene034156 | PPI |
| MS.gene034156 | MS.gene25010 | PPI |
| MS.gene81068 | MS.gene034156 | PPI |
| MS.gene061905 | MS.gene034156 | PPI |
| MS.gene034156 | MS.gene022752 | PPI |
| MS.gene55098 | MS.gene034156 | PPI |
| MS.gene77207 | MS.gene034156 | PPI |
| MS.gene034156 | MS.gene020215 | PPI |
| MS.gene034156 | MS.gene08488 | PPI |
| MS.gene034156 | MS.gene55098 | PPI |
| MS.gene053148 | MS.gene034156 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034156.t1 | MTR_4g008160 | 97.942 | 243 | 5 | 0 | 1 | 243 | 1 | 243 | 8.86e-177 | 485 |
| MS.gene034156.t1 | MTR_1g022385 | 87.552 | 241 | 30 | 0 | 3 | 243 | 35 | 275 | 3.56e-158 | 439 |
| MS.gene034156.t1 | MTR_2g038250 | 86.722 | 241 | 32 | 0 | 3 | 243 | 4 | 244 | 3.56e-157 | 436 |
| MS.gene034156.t1 | MTR_7g059170 | 46.809 | 235 | 124 | 1 | 9 | 243 | 13 | 246 | 1.36e-73 | 224 |
| MS.gene034156.t1 | MTR_1g022375 | 62.745 | 102 | 38 | 0 | 132 | 233 | 55 | 156 | 7.12e-39 | 132 |
| MS.gene034156.t1 | MTR_1g108785 | 58.621 | 58 | 18 | 4 | 184 | 235 | 2 | 59 | 2.09e-12 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034156.t1 | AT3G13580 | 85.000 | 240 | 36 | 0 | 4 | 243 | 5 | 244 | 4.45e-155 | 431 |
| MS.gene034156.t1 | AT3G13580 | 85.000 | 240 | 36 | 0 | 4 | 243 | 5 | 244 | 4.45e-155 | 431 |
| MS.gene034156.t1 | AT3G13580 | 85.000 | 240 | 36 | 0 | 4 | 243 | 5 | 244 | 4.45e-155 | 431 |
| MS.gene034156.t1 | AT3G13580 | 85.000 | 240 | 36 | 0 | 4 | 243 | 5 | 244 | 4.45e-155 | 431 |
| MS.gene034156.t1 | AT3G13580 | 85.000 | 240 | 36 | 0 | 4 | 243 | 5 | 244 | 4.45e-155 | 431 |
| MS.gene034156.t1 | AT3G13580 | 85.000 | 240 | 36 | 0 | 4 | 243 | 5 | 244 | 4.45e-155 | 431 |
| MS.gene034156.t1 | AT3G13580 | 85.000 | 240 | 36 | 0 | 4 | 243 | 5 | 244 | 4.45e-155 | 431 |
| MS.gene034156.t1 | AT3G13580 | 85.000 | 240 | 36 | 0 | 4 | 243 | 5 | 244 | 4.45e-155 | 431 |
| MS.gene034156.t1 | AT3G13580 | 85.000 | 240 | 36 | 0 | 4 | 243 | 5 | 244 | 4.45e-155 | 431 |
| MS.gene034156.t1 | AT2G01250 | 85.833 | 240 | 34 | 0 | 4 | 243 | 3 | 242 | 1.05e-153 | 427 |
| MS.gene034156.t1 | AT2G44120 | 82.083 | 240 | 43 | 0 | 4 | 243 | 3 | 242 | 8.08e-148 | 412 |
| MS.gene034156.t1 | AT2G44120 | 82.083 | 240 | 43 | 0 | 4 | 243 | 8 | 247 | 1.14e-147 | 412 |
| MS.gene034156.t1 | AT2G01250 | 80.571 | 175 | 34 | 0 | 4 | 178 | 3 | 177 | 2.69e-98 | 285 |
| MS.gene034156.t1 | AT1G80750 | 42.623 | 244 | 137 | 2 | 3 | 243 | 4 | 247 | 1.13e-60 | 191 |
Find 59 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTTGCTTTGTTAACTTTA+AGG | 0.072962 | 4.3:+87257230 | None:intergenic |
| TCCCTTACACTCTTCAAATT+TGG | 0.097727 | 4.3:+87257076 | None:intergenic |
| GTTGAGCCTTATGTGACTTA+TGG | 0.277993 | 4.3:-87257190 | MS.gene034156:CDS |
| CCCTTACACTCTTCAAATTT+GGG | 0.292487 | 4.3:+87257077 | None:intergenic |
| TTGAGCCTTATGTGACTTAT+GGG | 0.362158 | 4.3:-87257189 | MS.gene034156:intron |
| CTGTGTTGAAGAAGCAGAAC+AGG | 0.363263 | 4.3:-87258743 | MS.gene034156:CDS |
| CCTTTGGCCGTTCAAGCTTA+AGG | 0.366667 | 4.3:-87256799 | MS.gene034156:CDS |
| AGGAAGCAAACAACTTCCTT+TGG | 0.396409 | 4.3:-87256815 | MS.gene034156:CDS |
| GACTGTTGGACCACATTTCA+AGG | 0.408463 | 4.3:-87256835 | MS.gene034156:CDS |
| ACCCAAATTTGAAGAGTGTA+AGG | 0.411117 | 4.3:-87257078 | MS.gene034156:CDS |
| ATTACATCAATGAGCTCATC+AGG | 0.421060 | 4.3:-87256707 | MS.gene034156:CDS |
| CTCATCTACAAACGTGGGTA+TGG | 0.426956 | 4.3:-87257052 | MS.gene034156:CDS |
| TTTCCTTGTCTTGGGGTCCA+TGG | 0.427816 | 4.3:+87257519 | None:intergenic |
| GAGAACCGTAAGCTGATCTA+TGG | 0.446007 | 4.3:-87258660 | MS.gene034156:CDS |
| GTTCAAGCTTAAGGCTCCAT+TGG | 0.447908 | 4.3:-87256790 | MS.gene034156:CDS |
| TTCTCAAGAGTATGTGGATA+AGG | 0.453623 | 4.3:-87258622 | MS.gene034156:intron |
| TATGTTGAAGGCGGTGATGC+TGG | 0.455644 | 4.3:-87256741 | MS.gene034156:CDS |
| CAGGGAAGAACAATGGGCTT+TGG | 0.464957 | 4.3:-87258724 | MS.gene034156:CDS |
| ACCGTAAGCTGATCTATGGC+AGG | 0.465539 | 4.3:-87258656 | MS.gene034156:CDS |
| GTGGGTATGGAAAGCTAGAC+AGG | 0.468462 | 4.3:-87257039 | MS.gene034156:CDS |
| TTTGATGACCCTCAGGGACT+GGG | 0.469200 | 4.3:-87256903 | MS.gene034156:intron |
| TTCAAGCTTAAGGCTCCATT+GGG | 0.471133 | 4.3:-87256789 | MS.gene034156:CDS |
| GCAACTGTTTCGATTGAGAC+AGG | 0.474956 | 4.3:-87257491 | MS.gene034156:intron |
| ATAAACAAGAGCTTGGCCTC+TGG | 0.475047 | 4.3:+87258408 | None:intergenic |
| GCAGAACAGGGAAGAACAAT+GGG | 0.492072 | 4.3:-87258730 | MS.gene034156:CDS |
| TGCTTCTTCAACACAGACTC+AGG | 0.496291 | 4.3:+87258750 | None:intergenic |
| GCGAATAATAAACAAGAGCT+TGG | 0.498068 | 4.3:+87258401 | None:intergenic |
| CCCTGCCATAGATCAGCTTA+CGG | 0.515436 | 4.3:+87258655 | None:intergenic |
| CAACAATGAACATGTTGCAC+AGG | 0.520606 | 4.3:-87257213 | MS.gene034156:CDS |
| AAGAGGAACCACTATGTTGA+AGG | 0.523907 | 4.3:-87256753 | MS.gene034156:CDS |
| GCAGTATTCTCAAGAGTATG+TGG | 0.528099 | 4.3:-87258628 | MS.gene034156:CDS |
| AAGCTTAAGGCTCCATTGGG+TGG | 0.532905 | 4.3:-87256786 | MS.gene034156:CDS |
| ACATACCCATAAGTCACATA+AGG | 0.533172 | 4.3:+87257184 | None:intergenic |
| ATCCACGAGATCTTGACTGT+TGG | 0.544552 | 4.3:-87256849 | MS.gene034156:CDS |
| TTCTTCTTTAAGCCACCCAA+TGG | 0.546850 | 4.3:+87256774 | None:intergenic |
| TGACAACTCAATTATTGAGC+AGG | 0.556335 | 4.3:-87256999 | MS.gene034156:intron |
| CCTCAGGGACTGGGAAAGCA+TGG | 0.559473 | 4.3:-87256894 | MS.gene034156:intron |
| TTGTTTATTATTCGCATACG+AGG | 0.561538 | 4.3:-87258393 | MS.gene034156:CDS |
| AGCAGAACAGGGAAGAACAA+TGG | 0.564767 | 4.3:-87258731 | MS.gene034156:CDS |
| TTGTTTGCTTCCTTGAAATG+TGG | 0.570988 | 4.3:+87256825 | None:intergenic |
| GGATAAGATCTTCAATGCAT+AGG | 0.579833 | 4.3:+87256868 | None:intergenic |
| AAGCGTGAGGCTAAGCTGAA+AGG | 0.580752 | 4.3:-87258447 | MS.gene034156:CDS |
| CCTTAAGCTTGAACGGCCAA+AGG | 0.585766 | 4.3:+87256799 | None:intergenic |
| GTTGATTAGTTTGAAGCGTG+AGG | 0.590721 | 4.3:-87258460 | MS.gene034156:CDS |
| AATGGAGCCTTAAGCTTGAA+CGG | 0.593439 | 4.3:+87256792 | None:intergenic |
| GTCCAACAGTCAAGATCTCG+TGG | 0.596847 | 4.3:+87256847 | None:intergenic |
| CATCACCGCCTTCAACATAG+TGG | 0.607669 | 4.3:+87256745 | None:intergenic |
| ATAATTGAGTTGTCAGTGAG+AGG | 0.608273 | 4.3:+87257007 | None:intergenic |
| TGGGTGGCTTAAAGAAGAAG+AGG | 0.609725 | 4.3:-87256770 | MS.gene034156:CDS |
| CGTGAGGCTAAGCTGAAAGG+TGG | 0.613387 | 4.3:-87258444 | MS.gene034156:CDS |
| CCCAAATTTGAAGAGTGTAA+GGG | 0.616996 | 4.3:-87257077 | MS.gene034156:CDS |
| ATGCCATGGACCCCAAGACA+AGG | 0.632973 | 4.3:-87257522 | MS.gene034156:CDS |
| TGTTTATTATTCGCATACGA+GGG | 0.644515 | 4.3:-87258392 | MS.gene034156:intron |
| TGTGTTGAAGAAGCAGAACA+GGG | 0.649087 | 4.3:-87258742 | MS.gene034156:CDS |
| AACAATGAACATGTTGCACA+GGG | 0.654102 | 4.3:-87257212 | MS.gene034156:CDS |
| CCGTAAGCTGATCTATGGCA+GGG | 0.654899 | 4.3:-87258655 | MS.gene034156:CDS |
| AGGGAACTCATCTACAAACG+TGG | 0.682905 | 4.3:-87257058 | MS.gene034156:CDS |
| GGGAACTCATCTACAAACGT+GGG | 0.687591 | 4.3:-87257057 | MS.gene034156:CDS |
| AGGAACCACTATGTTGAAGG+CGG | 0.698307 | 4.3:-87256750 | MS.gene034156:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTCTTTACAAAATTTAATA+AGG | - | chr4.3:87257615-87257634 | MS.gene034156:intron | 15.0% |
| !! | TAACGAGTTTAATAGAAATA+TGG | - | chr4.3:87257456-87257475 | MS.gene034156:intron | 20.0% |
| !! | TGAAAAATCAATCAATAGTA+AGG | + | chr4.3:87257924-87257943 | None:intergenic | 20.0% |
| !!! | GGTTTTGTTTTTTATTTTGT+AGG | - | chr4.3:87256982-87257001 | MS.gene034156:intron | 20.0% |
| ! | AAGCCTAACAAATTTAAATG+AGG | + | chr4.3:87258038-87258057 | None:intergenic | 25.0% |
| ! | AGTACTTATAGTAGAAAAGA+CGG | - | chr4.3:87257279-87257298 | MS.gene034156:intron | 25.0% |
| ! | ATCTCTTGATCTTTCTTAAT+AGG | + | chr4.3:87257436-87257455 | None:intergenic | 25.0% |
| ! | CACTTAATTCAATTTCATGT+TGG | + | chr4.3:87257166-87257185 | None:intergenic | 25.0% |
| ! | TTCTAAACAATAAGAGAAAC+TGG | + | chr4.3:87257761-87257780 | None:intergenic | 25.0% |
| !! | TCACCTCATTTAAATTTGTT+AGG | - | chr4.3:87258032-87258051 | MS.gene034156:intron | 25.0% |
| !! | TTCTTCTTCTATAAGTGTTT+TGG | - | chr4.3:87257851-87257870 | MS.gene034156:intron | 25.0% |
| !!! | ATTTTTCAGTATTAATGCCA+TGG | - | chr4.3:87257936-87257955 | MS.gene034156:intron | 25.0% |
| !!! | CTTTCTTCGTATTGATTTAA+AGG | - | chr4.3:87258318-87258337 | MS.gene034156:intron | 25.0% |
| !!! | GTTTGGTTTTTTTAGTTGTT+CGG | - | chr4.3:87256900-87256919 | MS.gene034156:intron | 25.0% |
| !!! | TTGTTGCTTTGTTAACTTTA+AGG | + | chr4.3:87258245-87258264 | None:intergenic | 25.0% |
| AAAACATCTAAGAAGACAAC+TGG | + | chr4.3:87257888-87257907 | None:intergenic | 30.0% | |
| AAACATCTAAGAAGACAACT+GGG | + | chr4.3:87257887-87257906 | None:intergenic | 30.0% | |
| AATTAAGTGTAGTAGAGATG+AGG | - | chr4.3:87257177-87257196 | MS.gene034156:intron | 30.0% | |
| ATGAATCATAGACTTCTCAA+AGG | + | chr4.3:87258120-87258139 | None:intergenic | 30.0% | |
| GAAACTAGACTTATGTGATT+TGG | - | chr4.3:87257304-87257323 | MS.gene034156:intron | 30.0% | |
| GATAAAGACTAGACAAGATA+GGG | - | chr4.3:87257218-87257237 | MS.gene034156:CDS | 30.0% | |
| TGAAACAATTGAGACGTAAA+TGG | - | chr4.3:87257686-87257705 | MS.gene034156:intron | 30.0% | |
| TGATAAAGACTAGACAAGAT+AGG | - | chr4.3:87257217-87257236 | MS.gene034156:CDS | 30.0% | |
| TGTTTATTATTCGCATACGA+GGG | - | chr4.3:87257080-87257099 | MS.gene034156:CDS | 30.0% | |
| TTGTTTATTATTCGCATACG+AGG | - | chr4.3:87257079-87257098 | MS.gene034156:CDS | 30.0% | |
| TTGTTTGTATAAGAGCAGTT+TGG | - | chr4.3:87258177-87258196 | MS.gene034156:intron | 30.0% | |
| ! | AGTTGTCTTCTTAGATGTTT+TGG | - | chr4.3:87257887-87257906 | MS.gene034156:intron | 30.0% |
| ! | ATTTTCCTTCAACACTCAAA+AGG | - | chr4.3:87258351-87258370 | MS.gene034156:intron | 30.0% |
| ! | GCTCATTGATGTAATTTTCA+CGG | + | chr4.3:87258760-87258779 | None:intergenic | 30.0% |
| ! | GTTTTTGATGAAGTTATACG+AGG | - | chr4.3:87257656-87257675 | MS.gene034156:intron | 30.0% |
| ! | TGCAAAATTTTCCTTGTCTT+GGG | + | chr4.3:87257964-87257983 | None:intergenic | 30.0% |
| ! | TTGCAAAATTTTCCTTGTCT+TGG | + | chr4.3:87257965-87257984 | None:intergenic | 30.0% |
| ! | TTTGCTCAACAGATTTTCAA+TGG | - | chr4.3:87258213-87258232 | MS.gene034156:intron | 30.0% |
| !!! | ATTTTAGAGCAACTGTATAC+TGG | - | chr4.3:87258148-87258167 | MS.gene034156:intron | 30.0% |
| !!! | TGTTTTGTGTTGATTCAGAT+TGG | - | chr4.3:87257115-87257134 | MS.gene034156:intron | 30.0% |
| AACAATGAACATGTTGCACA+GGG | - | chr4.3:87258260-87258279 | MS.gene034156:intron | 35.0% | |
| AACATTAGACTAGAGAGAGT+TGG | - | chr4.3:87257252-87257271 | MS.gene034156:intron | 35.0% | |
| ACATACCCATAAGTCACATA+AGG | + | chr4.3:87258291-87258310 | None:intergenic | 35.0% | |
| ACATTAGACTAGAGAGAGTT+GGG | - | chr4.3:87257253-87257272 | MS.gene034156:intron | 35.0% | |
| ACTTATAGTAGAAAAGACGG+TGG | - | chr4.3:87257282-87257301 | MS.gene034156:intron | 35.0% | |
| AGTCAAATCACTAGATGTAG+AGG | - | chr4.3:87257385-87257404 | MS.gene034156:intron | 35.0% | |
| ATCTGTTGAGCAAACACATA+AGG | + | chr4.3:87258207-87258226 | None:intergenic | 35.0% | |
| ATTACATCAATGAGCTCATC+AGG | - | chr4.3:87258765-87258784 | MS.gene034156:CDS | 35.0% | |
| CCCTTACACTCTTCAAATTT+GGG | + | chr4.3:87258398-87258417 | None:intergenic | 35.0% | |
| CGGATTTATAGTGATAGTTC+TGG | - | chr4.3:87256920-87256939 | MS.gene034156:intron | 35.0% | |
| CTCACTAATCAATTGTGTTG+TGG | - | chr4.3:87256961-87256980 | MS.gene034156:intron | 35.0% | |
| GCGAATAATAAACAAGAGCT+TGG | + | chr4.3:87257074-87257093 | None:intergenic | 35.0% | |
| GGATAAGATCTTCAATGCAT+AGG | + | chr4.3:87258607-87258626 | None:intergenic | 35.0% | |
| TCCCTTACACTCTTCAAATT+TGG | + | chr4.3:87258399-87258418 | None:intergenic | 35.0% | |
| TGACAACTCAATTATTGAGC+AGG | - | chr4.3:87258473-87258492 | MS.gene034156:intron | 35.0% | |
| TTGTTTGCTTCCTTGAAATG+TGG | + | chr4.3:87258650-87258669 | None:intergenic | 35.0% | |
| ! | ACCCAAATTTGAAGAGTGTA+AGG | - | chr4.3:87258394-87258413 | MS.gene034156:CDS | 35.0% |
| ! | ATAATTGAGTTGTCAGTGAG+AGG | + | chr4.3:87258468-87258487 | None:intergenic | 35.0% |
| ! | CCCAAATTTGAAGAGTGTAA+GGG | - | chr4.3:87258395-87258414 | MS.gene034156:CDS | 35.0% |
| ! | GCAAAATTTTCCTTGTCTTG+GGG | + | chr4.3:87257963-87257982 | None:intergenic | 35.0% |
| ! | TCAGATTGGATTAGAGTGTT+AGG | - | chr4.3:87257129-87257148 | MS.gene034156:intron | 35.0% |
| ! | TGGATTTTATGTTGATCCAG+AGG | - | chr4.3:87257048-87257067 | MS.gene034156:CDS | 35.0% |
| ! | TTCTCAAGAGTATGTGGATA+AGG | - | chr4.3:87256850-87256869 | MS.gene034156:CDS | 35.0% |
| ! | TTGAGCCTTATGTGACTTAT+GGG | - | chr4.3:87258283-87258302 | MS.gene034156:intron | 35.0% |
| AAGAGGAACCACTATGTTGA+AGG | - | chr4.3:87258719-87258738 | MS.gene034156:CDS | 40.0% | |
| AATGGAGCCTTAAGCTTGAA+CGG | + | chr4.3:87258683-87258702 | None:intergenic | 40.0% | |
| AGGAAGCAAACAACTTCCTT+TGG | - | chr4.3:87258657-87258676 | MS.gene034156:CDS | 40.0% | |
| AGGAGAGTAGATTAGACAAC+AGG | - | chr4.3:87257361-87257380 | MS.gene034156:intron | 40.0% | |
| ATTAGACTAGAGAGAGTTGG+GGG | - | chr4.3:87257255-87257274 | MS.gene034156:intron | 40.0% | |
| CAAAGCAAGTCAGCAACATA+TGG | + | chr4.3:87258553-87258572 | None:intergenic | 40.0% | |
| CAACAATGAACATGTTGCAC+AGG | - | chr4.3:87258259-87258278 | MS.gene034156:intron | 40.0% | |
| CATTAGACTAGAGAGAGTTG+GGG | - | chr4.3:87257254-87257273 | MS.gene034156:intron | 40.0% | |
| CCTAATCCAATCTGAATCGA+CGG | + | chr4.3:87257566-87257585 | None:intergenic | 40.0% | |
| CTTATCCCACTAAGTGAGAT+CGG | + | chr4.3:87257521-87257540 | None:intergenic | 40.0% | |
| GGAGAGTAGATTAGACAACA+GGG | - | chr4.3:87257362-87257381 | MS.gene034156:intron | 40.0% | |
| TCACTTAGTGGGATAAGGTT+TGG | - | chr4.3:87257524-87257543 | MS.gene034156:CDS | 40.0% | |
| TGTGTTGAAGAAGCAGAACA+GGG | - | chr4.3:87256730-87256749 | MS.gene034156:CDS | 40.0% | |
| TTCAAGCTTAAGGCTCCATT+GGG | - | chr4.3:87258683-87258702 | MS.gene034156:CDS | 40.0% | |
| TTCTTCTTTAAGCCACCCAA+TGG | + | chr4.3:87258701-87258720 | None:intergenic | 40.0% | |
| ! | GCAGTATTCTCAAGAGTATG+TGG | - | chr4.3:87256844-87256863 | MS.gene034156:CDS | 40.0% |
| ! | GTTGAGCCTTATGTGACTTA+TGG | - | chr4.3:87258282-87258301 | MS.gene034156:intron | 40.0% |
| !! | ATAAGGCGTTGTTAGCTTAG+CGG | - | chr4.3:87257632-87257651 | MS.gene034156:intron | 40.0% |
| !! | CGTCGATTCAGATTGGATTA+GGG | - | chr4.3:87257564-87257583 | MS.gene034156:intron | 40.0% |
| !! | GTTGATTAGTTTGAAGCGTG+AGG | - | chr4.3:87257012-87257031 | MS.gene034156:CDS | 40.0% |
| !!! | GAAAGCCTTTTGAGTGTTGA+AGG | + | chr4.3:87258359-87258378 | None:intergenic | 40.0% |
| ACATGTAGAGTGAAGACCTG+TGG | - | chr4.3:87257327-87257346 | MS.gene034156:intron | 45.0% | |
| ACCCAACTAGAAACACGACA+AGG | + | chr4.3:87258072-87258091 | None:intergenic | 45.0% | |
| ACTAAGTGAGATCGGCTACA+TGG | + | chr4.3:87257513-87257532 | None:intergenic | 45.0% | |
| AGCAGAACAGGGAAGAACAA+TGG | - | chr4.3:87256741-87256760 | MS.gene034156:CDS | 45.0% | |
| AGGAACCACTATGTTGAAGG+CGG | - | chr4.3:87258722-87258741 | MS.gene034156:CDS | 45.0% | |
| AGGGAACTCATCTACAAACG+TGG | - | chr4.3:87258414-87258433 | MS.gene034156:CDS | 45.0% | |
| ATAAACAAGAGCTTGGCCTC+TGG | + | chr4.3:87257067-87257086 | None:intergenic | 45.0% | |
| ATCCACGAGATCTTGACTGT+TGG | - | chr4.3:87258623-87258642 | MS.gene034156:CDS | 45.0% | |
| ATGTAGCCGATCTCACTTAG+TGG | - | chr4.3:87257512-87257531 | MS.gene034156:CDS | 45.0% | |
| CGATCTCACTTAGTGGGATA+AGG | - | chr4.3:87257519-87257538 | MS.gene034156:CDS | 45.0% | |
| CTCATCTACAAACGTGGGTA+TGG | - | chr4.3:87258420-87258439 | MS.gene034156:CDS | 45.0% | |
| CTCCTTGCTACAAAATCCAC+AGG | + | chr4.3:87257346-87257365 | None:intergenic | 45.0% | |
| CTGTGTTGAAGAAGCAGAAC+AGG | - | chr4.3:87256729-87256748 | MS.gene034156:CDS | 45.0% | |
| GACTGTTGGACCACATTTCA+AGG | - | chr4.3:87258637-87258656 | MS.gene034156:CDS | 45.0% | |
| GAGAACCGTAAGCTGATCTA+TGG | - | chr4.3:87256812-87256831 | MS.gene034156:CDS | 45.0% | |
| GCAACTGTTTCGATTGAGAC+AGG | - | chr4.3:87257981-87258000 | MS.gene034156:intron | 45.0% | |
| GCAGAACAGGGAAGAACAAT+GGG | - | chr4.3:87256742-87256761 | MS.gene034156:CDS | 45.0% | |
| GGGAACTCATCTACAAACGT+GGG | - | chr4.3:87258415-87258434 | MS.gene034156:CDS | 45.0% | |
| GTTCAAGCTTAAGGCTCCAT+TGG | - | chr4.3:87258682-87258701 | MS.gene034156:CDS | 45.0% | |
| TGCTTCTTCAACACAGACTC+AGG | + | chr4.3:87256725-87256744 | None:intergenic | 45.0% | |
| TGGGTGGCTTAAAGAAGAAG+AGG | - | chr4.3:87258702-87258721 | MS.gene034156:CDS | 45.0% | |
| TGTAGCCGATCTCACTTAGT+GGG | - | chr4.3:87257513-87257532 | MS.gene034156:CDS | 45.0% | |
| ! | ACTTGCTTTGATGACCCTCA+GGG | - | chr4.3:87258563-87258582 | MS.gene034156:intron | 45.0% |
| ! | GACCTGTGGATTTTGTAGCA+AGG | - | chr4.3:87257341-87257360 | MS.gene034156:intron | 45.0% |
| !! | CCGTCGATTCAGATTGGATT+AGG | - | chr4.3:87257563-87257582 | MS.gene034156:intron | 45.0% |
| !! | GCCTTGTCGTGTTTCTAGTT+GGG | - | chr4.3:87258068-87258087 | MS.gene034156:intron | 45.0% |
| !! | TGCCTTGTCGTGTTTCTAGT+TGG | - | chr4.3:87258067-87258086 | MS.gene034156:intron | 45.0% |
| !! | TGTTGTCCGTCGATTCAGAT+TGG | - | chr4.3:87257557-87257576 | MS.gene034156:intron | 45.0% |
| AAGCGTGAGGCTAAGCTGAA+AGG | - | chr4.3:87257025-87257044 | MS.gene034156:CDS | 50.0% | |
| AAGCTTAAGGCTCCATTGGG+TGG | - | chr4.3:87258686-87258705 | MS.gene034156:CDS | 50.0% | |
| ACCGTAAGCTGATCTATGGC+AGG | - | chr4.3:87256816-87256835 | MS.gene034156:CDS | 50.0% | |
| CATCACCGCCTTCAACATAG+TGG | + | chr4.3:87258730-87258749 | None:intergenic | 50.0% | |
| CCCTGCCATAGATCAGCTTA+CGG | + | chr4.3:87256820-87256839 | None:intergenic | 50.0% | |
| CCGTAAGCTGATCTATGGCA+GGG | - | chr4.3:87256817-87256836 | MS.gene034156:CDS | 50.0% | |
| CCTTAAGCTTGAACGGCCAA+AGG | + | chr4.3:87258676-87258695 | None:intergenic | 50.0% | |
| CCTTTGGCCGTTCAAGCTTA+AGG | - | chr4.3:87258673-87258692 | MS.gene034156:CDS | 50.0% | |
| GTCACTGCAGTGCTCTTGTT+TGG | - | chr4.3:87256883-87256902 | MS.gene034156:CDS | 50.0% | |
| GTCCAACAGTCAAGATCTCG+TGG | + | chr4.3:87258628-87258647 | None:intergenic | 50.0% | |
| GTGGGTATGGAAAGCTAGAC+AGG | - | chr4.3:87258433-87258452 | MS.gene034156:CDS | 50.0% | |
| TATGTTGAAGGCGGTGATGC+TGG | - | chr4.3:87258731-87258750 | MS.gene034156:CDS | 50.0% | |
| TTTCCTTGTCTTGGGGTCCA+TGG | + | chr4.3:87257956-87257975 | None:intergenic | 50.0% | |
| ! | CAGGGAAGAACAATGGGCTT+TGG | - | chr4.3:87256748-87256767 | MS.gene034156:CDS | 50.0% |
| ! | GACTTGCTTTGATGACCCTC+AGG | - | chr4.3:87258562-87258581 | MS.gene034156:intron | 50.0% |
| ! | TTTGATGACCCTCAGGGACT+GGG | - | chr4.3:87258569-87258588 | MS.gene034156:intron | 50.0% |
| ATGCCATGGACCCCAAGACA+AGG | - | chr4.3:87257950-87257969 | MS.gene034156:intron | 55.0% | |
| CATGCTTTCCCAGTCCCTGA+GGG | + | chr4.3:87258580-87258599 | None:intergenic | 55.0% | |
| CGTGAGGCTAAGCTGAAAGG+TGG | - | chr4.3:87257028-87257047 | MS.gene034156:CDS | 55.0% | |
| ! | CTTTGATGACCCTCAGGGAC+TGG | - | chr4.3:87258568-87258587 | MS.gene034156:intron | 55.0% |
| CCATGCTTTCCCAGTCCCTG+AGG | + | chr4.3:87258581-87258600 | None:intergenic | 60.0% | |
| CCTCAGGGACTGGGAAAGCA+TGG | - | chr4.3:87258578-87258597 | MS.gene034156:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 87256695 | 87258799 | 87256695 | ID=MS.gene034156 |
| chr4.3 | mRNA | 87256695 | 87258799 | 87256695 | ID=MS.gene034156.t1;Parent=MS.gene034156 |
| chr4.3 | exon | 87258623 | 87258799 | 87258623 | ID=MS.gene034156.t1.exon1;Parent=MS.gene034156.t1 |
| chr4.3 | CDS | 87258623 | 87258799 | 87258623 | ID=cds.MS.gene034156.t1;Parent=MS.gene034156.t1 |
| chr4.3 | exon | 87258393 | 87258490 | 87258393 | ID=MS.gene034156.t1.exon2;Parent=MS.gene034156.t1 |
| chr4.3 | CDS | 87258393 | 87258490 | 87258393 | ID=cds.MS.gene034156.t1;Parent=MS.gene034156.t1 |
| chr4.3 | exon | 87257492 | 87257549 | 87257492 | ID=MS.gene034156.t1.exon3;Parent=MS.gene034156.t1 |
| chr4.3 | CDS | 87257492 | 87257549 | 87257492 | ID=cds.MS.gene034156.t1;Parent=MS.gene034156.t1 |
| chr4.3 | exon | 87257190 | 87257269 | 87257190 | ID=MS.gene034156.t1.exon4;Parent=MS.gene034156.t1 |
| chr4.3 | CDS | 87257190 | 87257269 | 87257190 | ID=cds.MS.gene034156.t1;Parent=MS.gene034156.t1 |
| chr4.3 | exon | 87257000 | 87257102 | 87257000 | ID=MS.gene034156.t1.exon5;Parent=MS.gene034156.t1 |
| chr4.3 | CDS | 87257000 | 87257102 | 87257000 | ID=cds.MS.gene034156.t1;Parent=MS.gene034156.t1 |
| chr4.3 | exon | 87256695 | 87256910 | 87256695 | ID=MS.gene034156.t1.exon6;Parent=MS.gene034156.t1 |
| chr4.3 | CDS | 87256695 | 87256910 | 87256695 | ID=cds.MS.gene034156.t1;Parent=MS.gene034156.t1 |
| Gene Sequence |
| Protein sequence |
