Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56166.t1 | XP_004488017.1 | 95.5 | 244 | 11 | 0 | 1 | 244 | 1 | 244 | 3.30E-126 | 461.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56166.t1 | Q9LHP1 | 82.4 | 244 | 43 | 0 | 1 | 244 | 1 | 244 | 1.2e-113 | 410.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56166.t1 | A0A1S2XEA5 | 95.5 | 244 | 11 | 0 | 1 | 244 | 1 | 244 | 2.4e-126 | 461.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050574 | MS.gene56166 | 0.802779 | 4.77E-49 | -1.69E-46 |
| MS.gene051063 | MS.gene56166 | 0.802452 | 5.57E-49 | -1.69E-46 |
| MS.gene051330 | MS.gene56166 | 0.826155 | 3.17E-54 | -1.69E-46 |
| MS.gene051687 | MS.gene56166 | 0.815136 | 1.08E-51 | -1.69E-46 |
| MS.gene051700 | MS.gene56166 | 0.802735 | 4.87E-49 | -1.69E-46 |
| MS.gene051746 | MS.gene56166 | 0.819123 | 1.37E-52 | -1.69E-46 |
| MS.gene051748 | MS.gene56166 | 0.8043 | 2.31E-49 | -1.69E-46 |
| MS.gene05188 | MS.gene56166 | 0.80732 | 5.36E-50 | -1.69E-46 |
| MS.gene051903 | MS.gene56166 | 0.81028 | 1.25E-50 | -1.69E-46 |
| MS.gene052947 | MS.gene56166 | 0.838817 | 2.30E-57 | -1.69E-46 |
| MS.gene053952 | MS.gene56166 | 0.831885 | 1.30E-55 | -1.69E-46 |
| MS.gene055780 | MS.gene56166 | 0.837843 | 4.09E-57 | -1.69E-46 |
| MS.gene056075 | MS.gene56166 | 0.817732 | 2.83E-52 | -1.69E-46 |
| MS.gene056091 | MS.gene56166 | 0.821721 | 3.47E-53 | -1.69E-46 |
| MS.gene056403 | MS.gene56166 | 0.803577 | 3.26E-49 | -1.69E-46 |
| MS.gene056605 | MS.gene56166 | 0.800799 | 1.22E-48 | -1.69E-46 |
| MS.gene056631 | MS.gene56166 | 0.808688 | 2.74E-50 | -1.69E-46 |
| MS.gene057094 | MS.gene56166 | 0.869333 | 3.35E-66 | -1.69E-46 |
| MS.gene058354 | MS.gene56166 | 0.835354 | 1.76E-56 | -1.69E-46 |
| MS.gene059726 | MS.gene56166 | 0.809726 | 1.64E-50 | -1.69E-46 |
| MS.gene06001 | MS.gene56166 | 0.893397 | 6.53E-75 | -1.69E-46 |
| MS.gene060429 | MS.gene56166 | 0.808278 | 3.35E-50 | -1.69E-46 |
| MS.gene060830 | MS.gene56166 | 0.802563 | 5.29E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene08488 | MS.gene56166 | PPI |
| MS.gene034156 | MS.gene56166 | PPI |
| MS.gene66047 | MS.gene56166 | PPI |
| MS.gene56166 | MS.gene24260 | PPI |
| MS.gene018553 | MS.gene56166 | PPI |
| MS.gene78232 | MS.gene56166 | PPI |
| MS.gene56166 | MS.gene054580 | PPI |
| MS.gene45646 | MS.gene56166 | PPI |
| MS.gene26979 | MS.gene56166 | PPI |
| MS.gene050985 | MS.gene56166 | PPI |
| MS.gene81068 | MS.gene56166 | PPI |
| MS.gene061905 | MS.gene56166 | PPI |
| MS.gene020215 | MS.gene56166 | PPI |
| MS.gene55098 | MS.gene56166 | PPI |
| MS.gene034157 | MS.gene56166 | PPI |
| MS.gene77207 | MS.gene56166 | PPI |
| MS.gene56166 | MS.gene25010 | PPI |
| MS.gene053148 | MS.gene56166 | PPI |
| MS.gene56166 | MS.gene034157 | PPI |
| MS.gene56166 | MS.gene64512 | PPI |
| MS.gene09845 | MS.gene56166 | PPI |
| MS.gene022752 | MS.gene56166 | PPI |
| MS.gene39294 | MS.gene56166 | PPI |
| MS.gene56166 | MS.gene65129 | PPI |
| MS.gene037074 | MS.gene56166 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56166.t1 | MTR_2g038250 | 98.361 | 244 | 4 | 0 | 1 | 244 | 1 | 244 | 3.80e-178 | 489 |
| MS.gene56166.t1 | MTR_1g022385 | 97.951 | 244 | 5 | 0 | 1 | 244 | 32 | 275 | 1.50e-177 | 489 |
| MS.gene56166.t1 | MTR_4g008160 | 86.722 | 241 | 32 | 0 | 4 | 244 | 3 | 243 | 8.50e-159 | 440 |
| MS.gene56166.t1 | MTR_7g059170 | 45.749 | 247 | 130 | 2 | 1 | 244 | 1 | 246 | 2.47e-73 | 223 |
| MS.gene56166.t1 | MTR_1g022375 | 66.667 | 102 | 34 | 0 | 133 | 234 | 55 | 156 | 6.95e-43 | 143 |
| MS.gene56166.t1 | MTR_1g108785 | 40.179 | 112 | 13 | 3 | 126 | 236 | 1 | 59 | 1.76e-15 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56166.t1 | AT3G13580 | 82.377 | 244 | 43 | 0 | 1 | 244 | 1 | 244 | 2.51e-153 | 426 |
| MS.gene56166.t1 | AT3G13580 | 82.377 | 244 | 43 | 0 | 1 | 244 | 1 | 244 | 2.51e-153 | 426 |
| MS.gene56166.t1 | AT3G13580 | 82.377 | 244 | 43 | 0 | 1 | 244 | 1 | 244 | 2.51e-153 | 426 |
| MS.gene56166.t1 | AT3G13580 | 82.377 | 244 | 43 | 0 | 1 | 244 | 1 | 244 | 2.51e-153 | 426 |
| MS.gene56166.t1 | AT3G13580 | 82.377 | 244 | 43 | 0 | 1 | 244 | 1 | 244 | 2.51e-153 | 426 |
| MS.gene56166.t1 | AT3G13580 | 82.377 | 244 | 43 | 0 | 1 | 244 | 1 | 244 | 2.51e-153 | 426 |
| MS.gene56166.t1 | AT3G13580 | 82.377 | 244 | 43 | 0 | 1 | 244 | 1 | 244 | 2.51e-153 | 426 |
| MS.gene56166.t1 | AT3G13580 | 82.377 | 244 | 43 | 0 | 1 | 244 | 1 | 244 | 2.51e-153 | 426 |
| MS.gene56166.t1 | AT3G13580 | 82.377 | 244 | 43 | 0 | 1 | 244 | 1 | 244 | 2.51e-153 | 426 |
| MS.gene56166.t1 | AT2G01250 | 84.583 | 240 | 37 | 0 | 5 | 244 | 3 | 242 | 6.61e-152 | 422 |
| MS.gene56166.t1 | AT2G44120 | 83.333 | 240 | 40 | 0 | 5 | 244 | 8 | 247 | 2.37e-150 | 419 |
| MS.gene56166.t1 | AT2G44120 | 83.333 | 240 | 40 | 0 | 5 | 244 | 3 | 242 | 2.75e-150 | 418 |
| MS.gene56166.t1 | AT2G01250 | 80.000 | 175 | 35 | 0 | 5 | 179 | 3 | 177 | 5.20e-97 | 281 |
| MS.gene56166.t1 | AT1G80750 | 43.320 | 247 | 137 | 2 | 1 | 244 | 1 | 247 | 1.88e-63 | 198 |
Find 62 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAAAATCTTCCTTGATTT+TGG | 0.006132 | 2.3:-50721151 | None:intergenic |
| TTCTCTGACACTCTTCAAAT+TGG | 0.182246 | 2.3:-50722242 | None:intergenic |
| AATATTCAATTGCAGGTTCT+TGG | 0.263781 | 2.3:+50722617 | MS.gene56166:intron |
| TGTTTCTTCAAAACAGATTC+AGG | 0.264633 | 2.3:-50720555 | None:intergenic |
| ACTCATTAGAAGGATGAATT+AGG | 0.270598 | 2.3:+50722826 | MS.gene56166:CDS |
| CTGAAACCAGGAAGCTTATC+TGG | 0.274950 | 2.3:+50720643 | MS.gene56166:CDS |
| TTTCAAGCTCAAAGCTCCTT+TGG | 0.284641 | 2.3:+50722730 | MS.gene56166:CDS |
| TTCAAGCTCAAAGCTCCTTT+GGG | 0.329811 | 2.3:+50722731 | MS.gene56166:CDS |
| TTGATCTACAAGCGTGGTTA+TGG | 0.334090 | 2.3:+50722265 | MS.gene56166:CDS |
| TTCAGCAAAAGGAGTTGATT+AGG | 0.371855 | 2.3:+50720795 | MS.gene56166:intron |
| TCTACTCCAGATAAGCTTCC+TGG | 0.375959 | 2.3:-50720649 | None:intergenic |
| CGGTTGCTTTGTTCACTTTG+AGG | 0.382967 | 2.3:-50722084 | None:intergenic |
| AAGGTGGTGATGCTGGTAAC+AGG | 0.401808 | 2.3:+50722786 | MS.gene56166:CDS |
| ATATTCAATTGCAGGTTCTT+GGG | 0.423006 | 2.3:+50722618 | MS.gene56166:intron |
| GTATTCCTTAGCGTACTGTT+TGG | 0.423633 | 2.3:-50720673 | None:intergenic |
| ATGGGCATTGGTGAAGAAAC+AGG | 0.439903 | 2.3:+50720593 | MS.gene56166:CDS |
| ACATCAATGAACTCATTAGA+AGG | 0.442744 | 2.3:+50722816 | MS.gene56166:CDS |
| GCAGCTTCTGCGATTGAGAC+AGG | 0.461345 | 2.3:+50721171 | MS.gene56166:CDS |
| GTTGAGCCATATGTCACCTA+TGG | 0.461514 | 2.3:+50722124 | MS.gene56166:CDS |
| TCTCTGACACTCTTCAAATT+GGG | 0.464078 | 2.3:-50722241 | None:intergenic |
| GAAGCGTGAAGCTAAGCTTA+AGG | 0.464202 | 2.3:+50720820 | MS.gene56166:CDS |
| AAGCGTGAAGCTAAGCTTAA+GGG | 0.467088 | 2.3:+50720821 | MS.gene56166:CDS |
| ATGAACAAAAGCTTAGCTTC+AGG | 0.472114 | 2.3:-50720860 | None:intergenic |
| GCATACCCATAGGTGACATA+TGG | 0.482193 | 2.3:-50722130 | None:intergenic |
| AGATAACTCTATCATCGAAC+AGG | 0.483740 | 2.3:+50722318 | MS.gene56166:CDS |
| AAGAGAAATCACTATGTTGA+AGG | 0.489111 | 2.3:+50722767 | MS.gene56166:CDS |
| AGAAGAAGAGAGCTGAAACC+AGG | 0.494410 | 2.3:+50720631 | MS.gene56166:CDS |
| CAACCGTGAATATGCTCCAC+AGG | 0.496550 | 2.3:+50722101 | MS.gene56166:CDS |
| TAATTTCAGTATCAATGCAA+TGG | 0.497010 | 2.3:+50721126 | MS.gene56166:intron |
| ACAGAAAAGGAATGAGGAAT+GGG | 0.497653 | 2.3:+50720575 | MS.gene56166:CDS |
| GAAGAAACAGAAAAGGAATG+AGG | 0.502388 | 2.3:+50720569 | MS.gene56166:CDS |
| AAAGGAGCTTTGAGCTTGAA+AGG | 0.504831 | 2.3:-50722728 | None:intergenic |
| GAGAGGCAAACAACTTCCTA+TGG | 0.504947 | 2.3:+50722705 | MS.gene56166:CDS |
| AACCCTGTGGAGCATATTCA+CGG | 0.507599 | 2.3:-50722104 | None:intergenic |
| ATGCAATGGACCCAAAATCA+AGG | 0.518414 | 2.3:+50721140 | MS.gene56166:CDS |
| AACAGAAAAGGAATGAGGAA+TGG | 0.521157 | 2.3:+50720574 | MS.gene56166:CDS |
| TGAAGTGAGGTCCAACAGTA+AGG | 0.528046 | 2.3:-50722682 | None:intergenic |
| TATGTTGAAGGTGGTGATGC+TGG | 0.533299 | 2.3:+50722779 | MS.gene56166:CDS |
| AAGGAATGAGGAATGGGCAT+TGG | 0.536098 | 2.3:+50720581 | MS.gene56166:CDS |
| ATTCATGAGATCCTTACTGT+TGG | 0.542331 | 2.3:+50722671 | MS.gene56166:CDS |
| GTGGTTATGGAAAGGTTGAT+AGG | 0.547437 | 2.3:+50722278 | MS.gene56166:CDS |
| TTGCAGGTTCTTGGGAAACA+TGG | 0.547799 | 2.3:+50722626 | MS.gene56166:intron |
| TTCTTCTTCATGCCACCCAA+AGG | 0.554983 | 2.3:-50722746 | None:intergenic |
| CTTTGAGCTTGAAAGGCCAT+AGG | 0.568033 | 2.3:-50722721 | None:intergenic |
| TTGTTCATTATCAGGATCAG+AGG | 0.568101 | 2.3:+50720875 | MS.gene56166:CDS |
| CGCTAAGGAATACGATGACT+CGG | 0.569371 | 2.3:+50720683 | MS.gene56166:CDS |
| AAGCTCAAAGCTCCTTTGGG+TGG | 0.570830 | 2.3:+50722734 | MS.gene56166:CDS |
| TTGTTTGCCTCTCTGAAGTG+AGG | 0.573961 | 2.3:-50722695 | None:intergenic |
| CAAAACAGATTCAGGAACAA+CGG | 0.575093 | 2.3:-50720547 | None:intergenic |
| TGTTCATTATCAGGATCAGA+GGG | 0.584717 | 2.3:+50720876 | MS.gene56166:CDS |
| TTGAGCCATATGTCACCTAT+GGG | 0.595042 | 2.3:+50722125 | MS.gene56166:CDS |
| ATTCACTGAAATGGCCAAAG+AGG | 0.608425 | 2.3:+50720515 | None:intergenic |
| CTACAAGCGTGGTTATGGAA+AGG | 0.617075 | 2.3:+50722270 | MS.gene56166:CDS |
| TAGAGCCAAACAGTACGCTA+AGG | 0.631717 | 2.3:+50720668 | MS.gene56166:CDS |
| CGTGAAGCTAAGCTTAAGGG+TGG | 0.634387 | 2.3:+50720824 | MS.gene56166:CDS |
| AGAAATCACTATGTTGAAGG+TGG | 0.637998 | 2.3:+50722770 | MS.gene56166:CDS |
| AGGTGGTGATGCTGGTAACA+GGG | 0.651466 | 2.3:+50722787 | MS.gene56166:CDS |
| TGACATATGGCTCAACCCTG+TGG | 0.662121 | 2.3:-50722117 | None:intergenic |
| AACCGTGAATATGCTCCACA+GGG | 0.683451 | 2.3:+50722102 | MS.gene56166:CDS |
| AGAGAATTGATCTACAAGCG+TGG | 0.711706 | 2.3:+50722259 | MS.gene56166:CDS |
| TGTTGGACCTCACTTCAGAG+AGG | 0.727556 | 2.3:+50722688 | MS.gene56166:CDS |
| TGGTGATGCTGGTAACAGGG+AGG | 0.759776 | 2.3:+50722790 | MS.gene56166:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTAAAGAGAAATACT+AGG | - | chr2.3:50721947-50721966 | None:intergenic | 15.0% |
| !! | ATTCTGATTATAACTTTAAA+CGG | - | chr2.3:50721300-50721319 | None:intergenic | 15.0% |
| !!! | AAAGGAAAAAAAAGTTTTTT+TGG | - | chr2.3:50721622-50721641 | None:intergenic | 15.0% |
| !!! | TAGTATTTCTCTTTAATTTT+TGG | + | chr2.3:50721946-50721965 | MS.gene56166:intron | 15.0% |
| !!! | TATATAATTTTGTTCTGTTT+TGG | + | chr2.3:50720986-50721005 | MS.gene56166:intron | 15.0% |
| !! | ATCTTCAATAGTTAAGTAAA+AGG | - | chr2.3:50721801-50721820 | None:intergenic | 20.0% |
| !! | GCAAAATAGAAAAAAATAAC+TGG | - | chr2.3:50722588-50722607 | None:intergenic | 20.0% |
| !! | TGTATTAATAATTCAGATAG+AGG | - | chr2.3:50721571-50721590 | None:intergenic | 20.0% |
| !!! | AGATTCTAACTTTGAAAATT+TGG | - | chr2.3:50722453-50722472 | None:intergenic | 20.0% |
| !!! | GATTCTAACTTTGAAAATTT+GGG | - | chr2.3:50722452-50722471 | None:intergenic | 20.0% |
| !!! | TTTCCTTTTTTGTATTGTTT+AGG | + | chr2.3:50721634-50721653 | MS.gene56166:intron | 20.0% |
| ! | AACTCATTATAACTCTGTAT+GGG | + | chr2.3:50722184-50722203 | MS.gene56166:intron | 25.0% |
| ! | AAGGGATCAATAGTTATTAT+AGG | + | chr2.3:50721426-50721445 | MS.gene56166:intron | 25.0% |
| ! | ACATGAAAATAACCAATTGT+TGG | - | chr2.3:50721513-50721532 | None:intergenic | 25.0% |
| ! | ATAATTGAGCTTTCATCTTA+TGG | + | chr2.3:50721477-50721496 | MS.gene56166:intron | 25.0% |
| ! | TAAAATACAAAGTCAGAATG+AGG | - | chr2.3:50722429-50722448 | None:intergenic | 25.0% |
| ! | TAACTCATTATAACTCTGTA+TGG | + | chr2.3:50722183-50722202 | MS.gene56166:intron | 25.0% |
| ! | TAAGTAAAAGGTTATCATAC+AGG | - | chr2.3:50721789-50721808 | None:intergenic | 25.0% |
| ! | TAATTTCAGTATCAATGCAA+TGG | + | chr2.3:50721126-50721145 | MS.gene56166:intron | 25.0% |
| !! | GCTTATTCTTCTATTTGTTT+TGG | + | chr2.3:50722038-50722057 | MS.gene56166:intron | 25.0% |
| !! | TTTAGTTTAGAGATAATGTG+TGG | + | chr2.3:50721905-50721924 | MS.gene56166:intron | 25.0% |
| AAAATTGACAATGACAAGGA+TGG | - | chr2.3:50721865-50721884 | None:intergenic | 30.0% | |
| AAGAGAAATCACTATGTTGA+AGG | + | chr2.3:50722767-50722786 | MS.gene56166:CDS | 30.0% | |
| AATATTCAATTGCAGGTTCT+TGG | + | chr2.3:50722617-50722636 | MS.gene56166:intron | 30.0% | |
| AATTTGTGTGTTTCAGCAAA+AGG | + | chr2.3:50720784-50720803 | MS.gene56166:intron | 30.0% | |
| ACATCAATGAACTCATTAGA+AGG | + | chr2.3:50722816-50722835 | MS.gene56166:CDS | 30.0% | |
| ACTAAACCAGTTGGTTATAA+TGG | - | chr2.3:50721839-50721858 | None:intergenic | 30.0% | |
| ACTATTGATCCCTTAATTGA+AGG | - | chr2.3:50721420-50721439 | None:intergenic | 30.0% | |
| ATATTCAATTGCAGGTTCTT+GGG | + | chr2.3:50722618-50722637 | MS.gene56166:intron | 30.0% | |
| CAGCCTAAACAATACAAAAA+AGG | - | chr2.3:50721640-50721659 | None:intergenic | 30.0% | |
| CTAAACCAGTTGGTTATAAT+GGG | - | chr2.3:50721838-50721857 | None:intergenic | 30.0% | |
| CTAATTATTTGATACTGAGC+AGG | + | chr2.3:50721758-50721777 | MS.gene56166:intron | 30.0% | |
| CTGACATAATATTCAATTGC+AGG | + | chr2.3:50722610-50722629 | MS.gene56166:intron | 30.0% | |
| GAATAAAATGTATCCTGTGT+GGG | + | chr2.3:50721053-50721072 | MS.gene56166:intron | 30.0% | |
| GCTGTTCATCTATATAAGAA+TGG | + | chr2.3:50721656-50721675 | MS.gene56166:intron | 30.0% | |
| TCAGAAAATTGACAATGACA+AGG | - | chr2.3:50721869-50721888 | None:intergenic | 30.0% | |
| TGAATAAAATGTATCCTGTG+TGG | + | chr2.3:50721052-50721071 | MS.gene56166:intron | 30.0% | |
| TGTTTCTTCAAAACAGATTC+AGG | - | chr2.3:50720558-50720577 | None:intergenic | 30.0% | |
| ! | CTAAGCTTTTGTTCATTATC+AGG | + | chr2.3:50720867-50720886 | MS.gene56166:CDS | 30.0% |
| ! | GCAAAATCTTCCTTGATTTT+GGG | - | chr2.3:50721153-50721172 | None:intergenic | 30.0% |
| ! | TAATTTTGCGGTGATTATGT+TGG | - | chr2.3:50721546-50721565 | None:intergenic | 30.0% |
| ! | TGCAAAATCTTCCTTGATTT+TGG | - | chr2.3:50721154-50721173 | None:intergenic | 30.0% |
| ! | TTCAAAGTGCCTTCAATTAA+GGG | + | chr2.3:50721408-50721427 | MS.gene56166:intron | 30.0% |
| ! | TTTCAAAGTGCCTTCAATTA+AGG | + | chr2.3:50721407-50721426 | MS.gene56166:intron | 30.0% |
| !! | GGTGCTATTATTATTGTTGA+AGG | + | chr2.3:50722554-50722573 | MS.gene56166:intron | 30.0% |
| !!! | CAATTGGTTTTGTTCTTGAT+GGG | + | chr2.3:50721219-50721238 | MS.gene56166:intron | 30.0% |
| !!! | CTGTTTTGAAGAAACAGAAA+AGG | + | chr2.3:50720562-50720581 | MS.gene56166:CDS | 30.0% |
| !!! | CTGTTTTGGAAAAATGATAG+AGG | + | chr2.3:50721000-50721019 | MS.gene56166:intron | 30.0% |
| !!! | TCTCTTTAATTTTTGGCTTC+TGG | + | chr2.3:50721953-50721972 | MS.gene56166:intron | 30.0% |
| AACAGAAAAGGAATGAGGAA+TGG | + | chr2.3:50720574-50720593 | MS.gene56166:CDS | 35.0% | |
| AATAATAGCACCACCATACA+CGG | - | chr2.3:50722546-50722565 | None:intergenic | 35.0% | |
| ACAGAAAAGGAATGAGGAAT+GGG | + | chr2.3:50720575-50720594 | MS.gene56166:CDS | 35.0% | |
| ACAGGTAAATCAGATTGGAT+TGG | + | chr2.3:50721189-50721208 | MS.gene56166:intron | 35.0% | |
| AGAAATCACTATGTTGAAGG+TGG | + | chr2.3:50722770-50722789 | MS.gene56166:CDS | 35.0% | |
| AGATAACTCTATCATCGAAC+AGG | + | chr2.3:50722318-50722337 | MS.gene56166:CDS | 35.0% | |
| ATACTCGTATCTTCTAGACT+CGG | + | chr2.3:50721997-50722016 | MS.gene56166:intron | 35.0% | |
| ATGAACAAAAGCTTAGCTTC+AGG | - | chr2.3:50720863-50720882 | None:intergenic | 35.0% | |
| ATTCACCCATTATAACCAAC+TGG | + | chr2.3:50721830-50721849 | MS.gene56166:intron | 35.0% | |
| ATTCATGAGATCCTTACTGT+TGG | + | chr2.3:50722671-50722690 | MS.gene56166:CDS | 35.0% | |
| CAAAACAGATTCAGGAACAA+CGG | - | chr2.3:50720550-50720569 | None:intergenic | 35.0% | |
| CAAATAAGAATAACCCACAC+AGG | - | chr2.3:50721069-50721088 | None:intergenic | 35.0% | |
| GAAGAAACAGAAAAGGAATG+AGG | + | chr2.3:50720569-50720588 | MS.gene56166:CDS | 35.0% | |
| GATTGCACTTTGCAATTGTT+GGG | + | chr2.3:50721370-50721389 | MS.gene56166:intron | 35.0% | |
| TCTCTGACACTCTTCAAATT+GGG | - | chr2.3:50722244-50722263 | None:intergenic | 35.0% | |
| TGATTGCACTTTGCAATTGT+TGG | + | chr2.3:50721369-50721388 | MS.gene56166:intron | 35.0% | |
| TGTGTAATCGAATGAAAGCA+GGG | - | chr2.3:50722367-50722386 | None:intergenic | 35.0% | |
| TGTTCATTATCAGGATCAGA+GGG | + | chr2.3:50720876-50720895 | MS.gene56166:CDS | 35.0% | |
| TTCTCTGACACTCTTCAAAT+TGG | - | chr2.3:50722245-50722264 | None:intergenic | 35.0% | |
| TTGAGACAGGTAAATCAGAT+TGG | + | chr2.3:50721184-50721203 | MS.gene56166:intron | 35.0% | |
| TTGTTCATTATCAGGATCAG+AGG | + | chr2.3:50720875-50720894 | MS.gene56166:CDS | 35.0% | |
| ! | CAGATAGAGGAGTAATTTTG+CGG | - | chr2.3:50721558-50721577 | None:intergenic | 35.0% |
| ! | TTAGTTGATGTATTTGTCGC+TGG | + | chr2.3:50721263-50721282 | MS.gene56166:intron | 35.0% |
| ! | TTCAGCAAAAGGAGTTGATT+AGG | + | chr2.3:50720795-50720814 | MS.gene56166:intron | 35.0% |
| !! | TTGGATTGGTTTGTTGCAAT+TGG | + | chr2.3:50721203-50721222 | MS.gene56166:intron | 35.0% |
| !! | TTTTGTTCTTGATGGGTGTT+TGG | + | chr2.3:50721226-50721245 | MS.gene56166:intron | 35.0% |
| !!! | GCAATTGGTTTTGTTCTTGA+TGG | + | chr2.3:50721218-50721237 | MS.gene56166:intron | 35.0% |
| AAGCGTGAAGCTAAGCTTAA+GGG | + | chr2.3:50720821-50720840 | MS.gene56166:CDS | 40.0% | |
| AATGAGGAGAGATCCTATCT+AGG | - | chr2.3:50722413-50722432 | None:intergenic | 40.0% | |
| AGAGAATTGATCTACAAGCG+TGG | + | chr2.3:50722259-50722278 | MS.gene56166:CDS | 40.0% | |
| ATAATAGCACCACCATACAC+GGG | - | chr2.3:50722545-50722564 | None:intergenic | 40.0% | |
| ATGCAATGGACCCAAAATCA+AGG | + | chr2.3:50721140-50721159 | MS.gene56166:CDS | 40.0% | |
| CTGTGTAATCGAATGAAAGC+AGG | - | chr2.3:50722368-50722387 | None:intergenic | 40.0% | |
| GTATTCCTTAGCGTACTGTT+TGG | - | chr2.3:50720676-50720695 | None:intergenic | 40.0% | |
| TCGGTGCAATTTATCAGTGT+AGG | + | chr2.3:50722016-50722035 | MS.gene56166:intron | 40.0% | |
| TTAGACAAAGTCACGCAATC+TGG | - | chr2.3:50722502-50722521 | None:intergenic | 40.0% | |
| TTCAAGCTCAAAGCTCCTTT+GGG | + | chr2.3:50722731-50722750 | MS.gene56166:CDS | 40.0% | |
| TTGAGATTCTGCATACCCAT+AGG | - | chr2.3:50722143-50722162 | None:intergenic | 40.0% | |
| TTGAGCCATATGTCACCTAT+GGG | + | chr2.3:50722125-50722144 | MS.gene56166:CDS | 40.0% | |
| TTGATCTACAAGCGTGGTTA+TGG | + | chr2.3:50722265-50722284 | MS.gene56166:CDS | 40.0% | |
| TTTCAAGCTCAAAGCTCCTT+TGG | + | chr2.3:50722730-50722749 | MS.gene56166:CDS | 40.0% | |
| ! | AACGGTTTTCACTTCCTCTT+TGG | - | chr2.3:50720532-50720551 | None:intergenic | 40.0% |
| ! | GTGGTTATGGAAAGGTTGAT+AGG | + | chr2.3:50722278-50722297 | MS.gene56166:CDS | 40.0% |
| !! | AAAGGAGCTTTGAGCTTGAA+AGG | - | chr2.3:50722731-50722750 | None:intergenic | 40.0% |
| !! | TTTTGGCTGCAGATCTTCAA+TGG | + | chr2.3:50722055-50722074 | MS.gene56166:intron | 40.0% |
| AACCCTGTGGAGCATATTCA+CGG | - | chr2.3:50722107-50722126 | None:intergenic | 45.0% | |
| AACCGTGAATATGCTCCACA+GGG | + | chr2.3:50722102-50722121 | MS.gene56166:CDS | 45.0% | |
| AAGGAATGAGGAATGGGCAT+TGG | + | chr2.3:50720581-50720600 | MS.gene56166:CDS | 45.0% | |
| AGAAGAAGAGAGCTGAAACC+AGG | + | chr2.3:50720631-50720650 | MS.gene56166:CDS | 45.0% | |
| CGCTAAGGAATACGATGACT+CGG | + | chr2.3:50720683-50720702 | MS.gene56166:CDS | 45.0% | |
| CTACAAGCGTGGTTATGGAA+AGG | + | chr2.3:50722270-50722289 | MS.gene56166:CDS | 45.0% | |
| CTGAAACCAGGAAGCTTATC+TGG | + | chr2.3:50720643-50720662 | MS.gene56166:CDS | 45.0% | |
| CTTTGAGCTTGAAAGGCCAT+AGG | - | chr2.3:50722724-50722743 | None:intergenic | 45.0% | |
| CTTTGCAATTGTTGGGTGCT+TGG | + | chr2.3:50721377-50721396 | MS.gene56166:intron | 45.0% | |
| GAAGCGTGAAGCTAAGCTTA+AGG | + | chr2.3:50720820-50720839 | MS.gene56166:CDS | 45.0% | |
| GAGAGGCAAACAACTTCCTA+TGG | + | chr2.3:50722705-50722724 | MS.gene56166:CDS | 45.0% | |
| GCATACCCATAGGTGACATA+TGG | - | chr2.3:50722133-50722152 | None:intergenic | 45.0% | |
| GGATGGAGAACTAAACCAGT+TGG | - | chr2.3:50721848-50721867 | None:intergenic | 45.0% | |
| GGCTAAGTGTCTCCAACAAT+TGG | + | chr2.3:50721498-50721517 | MS.gene56166:intron | 45.0% | |
| GTTGAGCCATATGTCACCTA+TGG | + | chr2.3:50722124-50722143 | MS.gene56166:CDS | 45.0% | |
| TAGAGCCAAACAGTACGCTA+AGG | + | chr2.3:50720668-50720687 | MS.gene56166:CDS | 45.0% | |
| TCTACTCCAGATAAGCTTCC+TGG | - | chr2.3:50720652-50720671 | None:intergenic | 45.0% | |
| TCTGGACTGTCTCATCAAGT+TGG | - | chr2.3:50722484-50722503 | None:intergenic | 45.0% | |
| TGAACTGTCCTGACCTAGAT+AGG | + | chr2.3:50722397-50722416 | MS.gene56166:intron | 45.0% | |
| TGAAGTGAGGTCCAACAGTA+AGG | - | chr2.3:50722685-50722704 | None:intergenic | 45.0% | |
| TTCTTCTTCATGCCACCCAA+AGG | - | chr2.3:50722749-50722768 | None:intergenic | 45.0% | |
| TTGCAGGTTCTTGGGAAACA+TGG | + | chr2.3:50722626-50722645 | MS.gene56166:intron | 45.0% | |
| TTTGCGGTGATTATGTTGGC+AGG | - | chr2.3:50721542-50721561 | None:intergenic | 45.0% | |
| ! | CGGTTGCTTTGTTCACTTTG+AGG | - | chr2.3:50722087-50722106 | None:intergenic | 45.0% |
| ! | TATGTTGAAGGTGGTGATGC+TGG | + | chr2.3:50722779-50722798 | MS.gene56166:CDS | 45.0% |
| !! | ATGGGCATTGGTGAAGAAAC+AGG | + | chr2.3:50720593-50720612 | MS.gene56166:CDS | 45.0% |
| !! | TTGTTTGCCTCTCTGAAGTG+AGG | - | chr2.3:50722698-50722717 | None:intergenic | 45.0% |
| !!! | ATAAAATATTTTAATACAAT+GGG | + | chr2.3:50721700-50721719 | MS.gene56166:intron | 5.0% |
| !!! | TAAAAAAATATGTTTTATTT+TGG | - | chr2.3:50720968-50720987 | None:intergenic | 5.0% |
| !!! | TATAAAATATTTTAATACAA+TGG | + | chr2.3:50721699-50721718 | MS.gene56166:intron | 5.0% |
| AAGCTCAAAGCTCCTTTGGG+TGG | + | chr2.3:50722734-50722753 | MS.gene56166:CDS | 50.0% | |
| CAACCGTGAATATGCTCCAC+AGG | + | chr2.3:50722101-50722120 | MS.gene56166:CDS | 50.0% | |
| CGTGAAGCTAAGCTTAAGGG+TGG | + | chr2.3:50720824-50720843 | MS.gene56166:CDS | 50.0% | |
| CTTGACCTATGTCCCGTGTA+TGG | + | chr2.3:50722530-50722549 | MS.gene56166:intron | 50.0% | |
| GGAGAGATCCTATCTAGGTC+AGG | - | chr2.3:50722408-50722427 | None:intergenic | 50.0% | |
| TGACATATGGCTCAACCCTG+TGG | - | chr2.3:50722120-50722139 | None:intergenic | 50.0% | |
| TGTTGGACCTCACTTCAGAG+AGG | + | chr2.3:50722688-50722707 | MS.gene56166:CDS | 50.0% | |
| ! | AAGGTGGTGATGCTGGTAAC+AGG | + | chr2.3:50722786-50722805 | MS.gene56166:CDS | 50.0% |
| ! | AGGTGGTGATGCTGGTAACA+GGG | + | chr2.3:50722787-50722806 | MS.gene56166:CDS | 50.0% |
| CACCACCATACACGGGACAT+AGG | - | chr2.3:50722538-50722557 | None:intergenic | 55.0% | |
| GACCTATGTCCCGTGTATGG+TGG | + | chr2.3:50722533-50722552 | MS.gene56166:intron | 55.0% | |
| GCAGCTTCTGCGATTGAGAC+AGG | + | chr2.3:50721171-50721190 | MS.gene56166:CDS | 55.0% | |
| ! | TGGTGATGCTGGTAACAGGG+AGG | + | chr2.3:50722790-50722809 | MS.gene56166:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 50720525 | 50722847 | 50720525 | ID=MS.gene56166 |
| chr2.3 | mRNA | 50720525 | 50722847 | 50720525 | ID=MS.gene56166.t1;Parent=MS.gene56166 |
| chr2.3 | exon | 50720525 | 50720704 | 50720525 | ID=MS.gene56166.t1.exon1;Parent=MS.gene56166.t1 |
| chr2.3 | CDS | 50720525 | 50720704 | 50720525 | ID=cds.MS.gene56166.t1;Parent=MS.gene56166.t1 |
| chr2.3 | exon | 50720800 | 50720897 | 50720800 | ID=MS.gene56166.t1.exon2;Parent=MS.gene56166.t1 |
| chr2.3 | CDS | 50720800 | 50720897 | 50720800 | ID=cds.MS.gene56166.t1;Parent=MS.gene56166.t1 |
| chr2.3 | exon | 50721135 | 50721192 | 50721135 | ID=MS.gene56166.t1.exon3;Parent=MS.gene56166.t1 |
| chr2.3 | CDS | 50721135 | 50721192 | 50721135 | ID=cds.MS.gene56166.t1;Parent=MS.gene56166.t1 |
| chr2.3 | exon | 50722067 | 50722146 | 50722067 | ID=MS.gene56166.t1.exon4;Parent=MS.gene56166.t1 |
| chr2.3 | CDS | 50722067 | 50722146 | 50722067 | ID=cds.MS.gene56166.t1;Parent=MS.gene56166.t1 |
| chr2.3 | exon | 50722237 | 50722339 | 50722237 | ID=MS.gene56166.t1.exon5;Parent=MS.gene56166.t1 |
| chr2.3 | CDS | 50722237 | 50722339 | 50722237 | ID=cds.MS.gene56166.t1;Parent=MS.gene56166.t1 |
| chr2.3 | exon | 50722632 | 50722847 | 50722632 | ID=MS.gene56166.t1.exon6;Parent=MS.gene56166.t1 |
| chr2.3 | CDS | 50722632 | 50722847 | 50722632 | ID=cds.MS.gene56166.t1;Parent=MS.gene56166.t1 |
| Gene Sequence |
| Protein sequence |
