Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26979.t1 | XP_024631234.1 | 98.8 | 244 | 3 | 0 | 1 | 244 | 1 | 244 | 1.80E-124 | 455.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26979.t1 | Q9LHP1 | 79.9 | 244 | 49 | 0 | 1 | 244 | 1 | 244 | 5.7e-111 | 401.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26979.t1 | A0A396JGV3 | 98.8 | 244 | 3 | 0 | 1 | 244 | 1 | 244 | 1.3e-124 | 455.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049824 | MS.gene26979 | 0.826369 | 2.82E-54 | -1.69E-46 |
| MS.gene049825 | MS.gene26979 | 0.859223 | 4.80E-63 | -1.69E-46 |
| MS.gene049873 | MS.gene26979 | 0.847517 | 1.10E-59 | -1.69E-46 |
| MS.gene050277 | MS.gene26979 | 0.806574 | 7.70E-50 | -1.69E-46 |
| MS.gene050303 | MS.gene26979 | 0.818035 | 2.42E-52 | -1.69E-46 |
| MS.gene050916 | MS.gene26979 | 0.80691 | 6.54E-50 | -1.69E-46 |
| MS.gene051330 | MS.gene26979 | 0.821464 | 3.98E-53 | -1.69E-46 |
| MS.gene05134 | MS.gene26979 | 0.806784 | 6.95E-50 | -1.69E-46 |
| MS.gene051687 | MS.gene26979 | 0.815186 | 1.05E-51 | -1.69E-46 |
| MS.gene051700 | MS.gene26979 | 0.831439 | 1.67E-55 | -1.69E-46 |
| MS.gene051746 | MS.gene26979 | 0.803159 | 3.98E-49 | -1.69E-46 |
| MS.gene051903 | MS.gene26979 | 0.841156 | 5.64E-58 | -1.69E-46 |
| MS.gene052133 | MS.gene26979 | 0.807127 | 5.88E-50 | -1.69E-46 |
| MS.gene052376 | MS.gene26979 | 0.810938 | 8.98E-51 | -1.69E-46 |
| MS.gene052947 | MS.gene26979 | 0.850798 | 1.34E-60 | -1.69E-46 |
| MS.gene053226 | MS.gene26979 | 0.803906 | 2.79E-49 | -1.69E-46 |
| MS.gene053294 | MS.gene26979 | 0.819024 | 1.44E-52 | -1.69E-46 |
| MS.gene053883 | MS.gene26979 | 0.801703 | 7.94E-49 | -1.69E-46 |
| MS.gene055424 | MS.gene26979 | 0.802104 | 6.57E-49 | -1.69E-46 |
| MS.gene055466 | MS.gene26979 | 0.806579 | 7.68E-50 | -1.69E-46 |
| MS.gene055468 | MS.gene26979 | 0.806536 | 7.84E-50 | -1.69E-46 |
| MS.gene055555 | MS.gene26979 | 0.82705 | 1.94E-54 | -1.69E-46 |
| MS.gene055580 | MS.gene26979 | -0.827916 | 1.20E-54 | -1.69E-46 |
| MS.gene055778 | MS.gene26979 | 0.809609 | 1.74E-50 | -1.69E-46 |
| MS.gene055808 | MS.gene26979 | 0.857495 | 1.57E-62 | -1.69E-46 |
| MS.gene056043 | MS.gene26979 | -0.823686 | 1.21E-53 | -1.69E-46 |
| MS.gene056075 | MS.gene26979 | 0.810033 | 1.41E-50 | -1.69E-46 |
| MS.gene056091 | MS.gene26979 | 0.877156 | 7.88E-69 | -1.69E-46 |
| MS.gene056631 | MS.gene26979 | 0.818245 | 2.17E-52 | -1.69E-46 |
| MS.gene057705 | MS.gene26979 | 0.823287 | 1.50E-53 | -1.69E-46 |
| MS.gene058037 | MS.gene26979 | 0.80652 | 7.90E-50 | -1.69E-46 |
| MS.gene058084 | MS.gene26979 | 0.811729 | 6.05E-51 | -1.69E-46 |
| MS.gene058625 | MS.gene26979 | 0.800682 | 1.29E-48 | -1.69E-46 |
| MS.gene058906 | MS.gene26979 | 0.820728 | 5.88E-53 | -1.69E-46 |
| MS.gene058908 | MS.gene26979 | 0.805252 | 1.46E-49 | -1.69E-46 |
| MS.gene058911 | MS.gene26979 | 0.80891 | 2.46E-50 | -1.69E-46 |
| MS.gene05954 | MS.gene26979 | 0.845166 | 4.81E-59 | -1.69E-46 |
| MS.gene06001 | MS.gene26979 | 0.872679 | 2.64E-67 | -1.69E-46 |
| MS.gene060429 | MS.gene26979 | 0.890245 | 1.17E-73 | -1.69E-46 |
| MS.gene060587 | MS.gene26979 | 0.807548 | 4.79E-50 | -1.69E-46 |
| MS.gene060917 | MS.gene26979 | 0.832628 | 8.48E-56 | -1.69E-46 |
| MS.gene061266 | MS.gene26979 | 0.815753 | 7.87E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene78232 | MS.gene26979 | PPI |
| MS.gene26979 | MS.gene020215 | PPI |
| MS.gene45646 | MS.gene26979 | PPI |
| MS.gene26979 | MS.gene55098 | PPI |
| MS.gene034156 | MS.gene26979 | PPI |
| MS.gene26979 | MS.gene56166 | PPI |
| MS.gene81068 | MS.gene26979 | PPI |
| MS.gene26979 | MS.gene65129 | PPI |
| MS.gene09845 | MS.gene26979 | PPI |
| MS.gene77207 | MS.gene26979 | PPI |
| MS.gene050985 | MS.gene26979 | PPI |
| MS.gene26979 | MS.gene24260 | PPI |
| MS.gene053148 | MS.gene26979 | PPI |
| MS.gene26979 | MS.gene054580 | PPI |
| MS.gene26979 | MS.gene034156 | PPI |
| MS.gene061905 | MS.gene26979 | PPI |
| MS.gene55098 | MS.gene26979 | PPI |
| MS.gene26979 | MS.gene39294 | PPI |
| MS.gene26979 | MS.gene08488 | PPI |
| MS.gene26979 | MS.gene25010 | PPI |
| MS.gene037074 | MS.gene26979 | PPI |
| MS.gene26979 | MS.gene022752 | PPI |
| MS.gene66047 | MS.gene26979 | PPI |
| MS.gene26979 | MS.gene034157 | PPI |
| MS.gene018553 | MS.gene26979 | PPI |
| MS.gene26979 | MS.gene64512 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26979.t1 | MTR_1g022385 | 99.180 | 244 | 2 | 0 | 1 | 244 | 32 | 275 | 2.38e-179 | 493 |
| MS.gene26979.t1 | MTR_2g038250 | 97.951 | 244 | 5 | 0 | 1 | 244 | 1 | 244 | 1.71e-177 | 487 |
| MS.gene26979.t1 | MTR_4g008160 | 87.137 | 241 | 31 | 0 | 4 | 244 | 3 | 243 | 1.79e-159 | 442 |
| MS.gene26979.t1 | MTR_7g059170 | 46.383 | 235 | 125 | 1 | 10 | 244 | 13 | 246 | 7.20e-74 | 225 |
| MS.gene26979.t1 | MTR_1g022375 | 66.667 | 102 | 34 | 0 | 133 | 234 | 55 | 156 | 7.03e-43 | 143 |
| MS.gene26979.t1 | MTR_1g108785 | 40.179 | 112 | 13 | 3 | 126 | 236 | 1 | 59 | 1.71e-15 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26979.t1 | AT3G13580 | 82.787 | 244 | 42 | 0 | 1 | 244 | 1 | 244 | 4.79e-154 | 428 |
| MS.gene26979.t1 | AT3G13580 | 82.787 | 244 | 42 | 0 | 1 | 244 | 1 | 244 | 4.79e-154 | 428 |
| MS.gene26979.t1 | AT3G13580 | 82.787 | 244 | 42 | 0 | 1 | 244 | 1 | 244 | 4.79e-154 | 428 |
| MS.gene26979.t1 | AT3G13580 | 82.787 | 244 | 42 | 0 | 1 | 244 | 1 | 244 | 4.79e-154 | 428 |
| MS.gene26979.t1 | AT3G13580 | 82.787 | 244 | 42 | 0 | 1 | 244 | 1 | 244 | 4.79e-154 | 428 |
| MS.gene26979.t1 | AT3G13580 | 82.787 | 244 | 42 | 0 | 1 | 244 | 1 | 244 | 4.79e-154 | 428 |
| MS.gene26979.t1 | AT3G13580 | 82.787 | 244 | 42 | 0 | 1 | 244 | 1 | 244 | 4.79e-154 | 428 |
| MS.gene26979.t1 | AT3G13580 | 82.787 | 244 | 42 | 0 | 1 | 244 | 1 | 244 | 4.79e-154 | 428 |
| MS.gene26979.t1 | AT3G13580 | 82.787 | 244 | 42 | 0 | 1 | 244 | 1 | 244 | 4.79e-154 | 428 |
| MS.gene26979.t1 | AT2G01250 | 84.583 | 240 | 37 | 0 | 5 | 244 | 3 | 242 | 9.92e-152 | 422 |
| MS.gene26979.t1 | AT2G44120 | 83.750 | 240 | 39 | 0 | 5 | 244 | 3 | 242 | 4.86e-151 | 420 |
| MS.gene26979.t1 | AT2G44120 | 83.750 | 240 | 39 | 0 | 5 | 244 | 8 | 247 | 6.78e-151 | 420 |
| MS.gene26979.t1 | AT2G01250 | 80.000 | 175 | 35 | 0 | 5 | 179 | 3 | 177 | 9.39e-97 | 281 |
| MS.gene26979.t1 | AT1G80750 | 42.915 | 247 | 138 | 2 | 1 | 244 | 1 | 247 | 1.13e-63 | 199 |
Find 63 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAAAATCTTCCTTGATTT+TGG | 0.006132 | 1.3:-2591195 | None:intergenic |
| CTAAGCTCTTGTTCATTATT+AGG | 0.173523 | 1.3:+2591039 | MS.gene26979:CDS |
| TGCTTCTTCAAAACGGATTC+AGG | 0.216526 | 1.3:-2590194 | None:intergenic |
| CCCTGACGCTCTTCAGATTA+GGG | 0.318959 | 1.3:-2593001 | None:intergenic |
| TTATCCAATGGGCAGGTTCT+TGG | 0.334500 | 1.3:+2593298 | MS.gene26979:intron |
| ATATTCCTTGGCGTATTGTT+TGG | 0.342275 | 1.3:-2590312 | None:intergenic |
| TATCCAATGGGCAGGTTCTT+GGG | 0.378090 | 1.3:+2593299 | MS.gene26979:intron |
| CTGAAACAAGGAAACTCATT+TGG | 0.390452 | 1.3:+2590282 | MS.gene26979:CDS |
| TCCCTGACGCTCTTCAGATT+AGG | 0.391787 | 1.3:-2593002 | None:intergenic |
| AAGGTGGTGATGCTGGAAAC+AGG | 0.400679 | 1.3:+2593467 | MS.gene26979:CDS |
| AGCAGAAAAGGAACGAAGAA+TGG | 0.407682 | 1.3:+2590213 | MS.gene26979:CDS |
| ACCCTAATCTGAAGAGCGTC+AGG | 0.410603 | 1.3:+2593000 | MS.gene26979:CDS |
| CGCCAAGGAATATGATGATC+AGG | 0.420081 | 1.3:+2590322 | MS.gene26979:CDS |
| ATGAACAAGAGCTTAGCTTC+AGG | 0.424828 | 1.3:-2591032 | None:intergenic |
| TTTCTTCTTCATACCACCTA+GGG | 0.429478 | 1.3:-2593428 | None:intergenic |
| AGACAACTCAATCATTGAAC+AGG | 0.442244 | 1.3:+2593079 | MS.gene26979:CDS |
| TGAACAAGAGCTTAGCTTCA+GGG | 0.470751 | 1.3:-2591031 | None:intergenic |
| TATGTGGAAGGTGGTGATGC+TGG | 0.489381 | 1.3:+2593460 | MS.gene26979:CDS |
| ATTGGTGAAGAAGCAGGAAC+AGG | 0.496788 | 1.3:+2590238 | MS.gene26979:CDS |
| AACCCTGTGGAGCATGTTCA+CGG | 0.497828 | 1.3:-2592955 | None:intergenic |
| TTGATCTACAAGAGGGGCTA+CGG | 0.499583 | 1.3:+2593026 | MS.gene26979:CDS |
| CTACCGTGAACATGCTCCAC+AGG | 0.502553 | 1.3:+2592952 | MS.gene26979:CDS |
| GGGTACCCGTATGTAACATA+AGG | 0.504429 | 1.3:-2592981 | None:intergenic |
| GCAGAAAAGGAACGAAGAAT+GGG | 0.509066 | 1.3:+2590214 | MS.gene26979:CDS |
| TACCTGATCATCATATTCCT+TGG | 0.513381 | 1.3:-2590324 | None:intergenic |
| GGGGCTACGGCAAAGTTGAC+AGG | 0.514631 | 1.3:+2593039 | MS.gene26979:CDS |
| TGCAGCAAAAGGAGTTGATC+AGG | 0.517555 | 1.3:+2590967 | MS.gene26979:intron |
| ATGGGCATTGGTGAAGAAGC+AGG | 0.518449 | 1.3:+2590232 | MS.gene26979:CDS |
| GTTGAGCCTTATGTTACATA+CGG | 0.518747 | 1.3:+2592975 | MS.gene26979:CDS |
| AGGGGAGCTTTGAGCTTGAA+AGG | 0.525834 | 1.3:-2593409 | None:intergenic |
| GTCGAAAGAGGAAGTGAAAA+CGG | 0.538106 | 1.3:+2590166 | MS.gene26979:CDS |
| ACGCTATGGACCCAAAATCA+AGG | 0.543591 | 1.3:+2591184 | MS.gene26979:CDS |
| AAAAGAAATCATTATGTGGA+AGG | 0.546296 | 1.3:+2593448 | MS.gene26979:CDS |
| TGTTTGAAGGATGTCGAAAG+AGG | 0.557035 | 1.3:+2590154 | None:intergenic |
| TTGTTCATTATTAGGATCAG+AGG | 0.561223 | 1.3:+2591047 | MS.gene26979:CDS |
| CTTTGAGCTTGAAAGGCCAC+AGG | 0.568038 | 1.3:-2593402 | None:intergenic |
| GAAGAAAAGAAATCATTATG+TGG | 0.573776 | 1.3:+2593444 | MS.gene26979:CDS |
| TGTTCATTATTAGGATCAGA+GGG | 0.574120 | 1.3:+2591048 | MS.gene26979:CDS |
| GAAGCGTGAAGCTAAACTCA+AGG | 0.589756 | 1.3:+2590992 | MS.gene26979:CDS |
| AGAAATCATTATGTGGAAGG+TGG | 0.590613 | 1.3:+2593451 | MS.gene26979:CDS |
| AGAAGAAGAGAGCTGAAACA+AGG | 0.596539 | 1.3:+2590270 | MS.gene26979:CDS |
| TTGAGCCTTATGTTACATAC+GGG | 0.597990 | 1.3:+2592976 | MS.gene26979:CDS |
| TTGTTTGCCTCTCTGAAGTG+AGG | 0.607151 | 1.3:-2593376 | None:intergenic |
| GGGCAGGTTCTTGGGAAGCA+CGG | 0.607398 | 1.3:+2593307 | MS.gene26979:intron |
| TTCTTCTTCATACCACCTAG+GGG | 0.609907 | 1.3:-2593427 | None:intergenic |
| TTCAAGCTCAAAGCTCCCCT+AGG | 0.610220 | 1.3:+2593412 | MS.gene26979:CDS |
| AAGGAACGAAGAATGGGCAT+TGG | 0.610396 | 1.3:+2590220 | MS.gene26979:CDS |
| CAGGGAATTGATCTACAAGA+GGG | 0.615110 | 1.3:+2593019 | MS.gene26979:CDS |
| GAGAGGCAAACAACTTCCTG+TGG | 0.626203 | 1.3:+2593386 | MS.gene26979:CDS |
| ACATCAACGAACTCATCAGA+AGG | 0.630261 | 1.3:+2593497 | MS.gene26979:CDS |
| TCAGGGAATTGATCTACAAG+AGG | 0.639447 | 1.3:+2593018 | MS.gene26979:CDS |
| CGTGAAGCTAAACTCAAGGG+TGG | 0.639969 | 1.3:+2590996 | MS.gene26979:CDS |
| AGGTGGTGATGCTGGAAACA+GGG | 0.642090 | 1.3:+2593468 | MS.gene26979:CDS |
| TACCGTGAACATGCTCCACA+GGG | 0.645382 | 1.3:+2592953 | MS.gene26979:CDS |
| AAGCTCAAAGCTCCCCTAGG+TGG | 0.657354 | 1.3:+2593415 | MS.gene26979:CDS |
| ATTCACGAGATACTAACAGT+TGG | 0.659550 | 1.3:+2593352 | MS.gene26979:CDS |
| TAGAGCCAAACAATACGCCA+AGG | 0.659987 | 1.3:+2590307 | MS.gene26979:CDS |
| AAGCGTGAAGCTAAACTCAA+GGG | 0.663061 | 1.3:+2590993 | MS.gene26979:CDS |
| CCCTAATCTGAAGAGCGTCA+GGG | 0.672345 | 1.3:+2593001 | MS.gene26979:CDS |
| TAACATAAGGCTCAACCCTG+TGG | 0.679817 | 1.3:-2592968 | None:intergenic |
| AGGGAATTGATCTACAAGAG+GGG | 0.717541 | 1.3:+2593020 | MS.gene26979:CDS |
| AGTTGGTCCTCACTTCAGAG+AGG | 0.754549 | 1.3:+2593369 | MS.gene26979:CDS |
| GAAAGAGGAAGTGAAAACGG+TGG | 0.767520 | 1.3:+2590169 | MS.gene26979:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATTTTTTTATCAATTAAAA+TGG | + | chr1.3:2592438-2592457 | MS.gene26979:intron | 10.0% |
| !!! | TTATTGTTGTTTTAATTAAT+GGG | + | chr1.3:2591137-2591156 | MS.gene26979:intron | 10.0% |
| !! | AAATAATAAATCAATACTGT+AGG | - | chr1.3:2591082-2591101 | None:intergenic | 15.0% |
| !! | AATAACAAAATATTATGCAT+TGG | - | chr1.3:2592180-2592199 | None:intergenic | 15.0% |
| !!! | AACTTATTTTATGTTACATA+CGG | + | chr1.3:2592301-2592320 | MS.gene26979:intron | 15.0% |
| !!! | AGTTTTGATTATGTAATTTT+AGG | + | chr1.3:2590358-2590377 | MS.gene26979:intron | 15.0% |
| !!! | CAAATAATTTTATTTAGAAG+AGG | - | chr1.3:2592203-2592222 | None:intergenic | 15.0% |
| !!! | GTATAAATTAAAAAGGTATA+TGG | - | chr1.3:2590923-2590942 | None:intergenic | 15.0% |
| !!! | GTTATTGTTGTTTTAATTAA+TGG | + | chr1.3:2591136-2591155 | MS.gene26979:intron | 15.0% |
| !!! | TACTTCTTTTTATTTTCTTA+CGG | + | chr1.3:2592490-2592509 | MS.gene26979:intron | 15.0% |
| !!! | GTAACTTTTTAGTGTATAAT+TGG | + | chr1.3:2591319-2591338 | MS.gene26979:intron | 20.0% |
| !!! | TTAAAAAGGTATATGGATTA+AGG | - | chr1.3:2590916-2590935 | None:intergenic | 20.0% |
| ! | AAAAGAAATCATTATGTGGA+AGG | + | chr1.3:2593448-2593467 | MS.gene26979:CDS | 25.0% |
| ! | AAACTAAACAAGTATGAAAG+AGG | + | chr1.3:2592556-2592575 | MS.gene26979:intron | 25.0% |
| ! | AACTTACAACTAAAACTCTT+AGG | + | chr1.3:2591963-2591982 | MS.gene26979:intron | 25.0% |
| ! | AATGTAACATTTCTTCAGTT+TGG | - | chr1.3:2592717-2592736 | None:intergenic | 25.0% |
| ! | ACTTACAACTAAAACTCTTA+GGG | + | chr1.3:2591964-2591983 | MS.gene26979:intron | 25.0% |
| ! | AGTCTTTCTATGTTTAATAC+AGG | + | chr1.3:2591667-2591686 | MS.gene26979:intron | 25.0% |
| ! | ATATTGGAGAACTTTGTAAA+TGG | + | chr1.3:2590493-2590512 | MS.gene26979:intron | 25.0% |
| ! | ATGAAAGAGGAAAAAGAAAA+GGG | + | chr1.3:2592569-2592588 | MS.gene26979:intron | 25.0% |
| ! | GAAAAACTATACATTGTCAT+AGG | - | chr1.3:2591597-2591616 | None:intergenic | 25.0% |
| ! | GAAGAAAAGAAATCATTATG+TGG | + | chr1.3:2593444-2593463 | MS.gene26979:CDS | 25.0% |
| ! | GTCTTTCTATGTTTAATACA+GGG | + | chr1.3:2591668-2591687 | MS.gene26979:intron | 25.0% |
| ! | TATGAAAGAGGAAAAAGAAA+AGG | + | chr1.3:2592568-2592587 | MS.gene26979:intron | 25.0% |
| ! | TCAAAAGAAATGGAAGAATA+AGG | - | chr1.3:2592892-2592911 | None:intergenic | 25.0% |
| ! | TCTTTCTATGCTTAATACAA+GGG | - | chr1.3:2591734-2591753 | None:intergenic | 25.0% |
| ! | TCTTTCTATGTTTAATACAG+GGG | + | chr1.3:2591669-2591688 | MS.gene26979:intron | 25.0% |
| ! | TGAAAACAACTTATGAACAA+TGG | + | chr1.3:2590807-2590826 | MS.gene26979:intron | 25.0% |
| !! | ATAGTATACTAGTTATTTCC+AGG | + | chr1.3:2591103-2591122 | MS.gene26979:intron | 25.0% |
| !! | ATATGGATTAAGGAATTGTT+TGG | - | chr1.3:2590906-2590925 | None:intergenic | 25.0% |
| !!! | ATAAGTTTTGTGATGCTATT+TGG | - | chr1.3:2590738-2590757 | None:intergenic | 25.0% |
| !!! | CATTCAGATTGTTTTTTGTT+TGG | + | chr1.3:2591241-2591260 | MS.gene26979:intron | 25.0% |
| !!! | TAAGTTTTGTGATGCTATTT+GGG | - | chr1.3:2590737-2590756 | None:intergenic | 25.0% |
| !!! | TAATTTTAGTATCAACGCTA+TGG | + | chr1.3:2591170-2591189 | MS.gene26979:intron | 25.0% |
| AGTTGTGATGTTATCAAACA+TGG | - | chr1.3:2591947-2591966 | None:intergenic | 30.0% | |
| ATAAGCTGTTAATCCAAACA+AGG | - | chr1.3:2590384-2590403 | None:intergenic | 30.0% | |
| ATCAAAACCTCTGCTATAAT+GGG | - | chr1.3:2592823-2592842 | None:intergenic | 30.0% | |
| ATTCTTCAACACAGTATTAG+AGG | - | chr1.3:2592848-2592867 | None:intergenic | 30.0% | |
| CAATCACTAAATGTTGTAGT+CGG | + | chr1.3:2593124-2593143 | MS.gene26979:intron | 30.0% | |
| CTAAGCTCTTGTTCATTATT+AGG | + | chr1.3:2591039-2591058 | MS.gene26979:CDS | 30.0% | |
| GAAAAAGAAAAGGGTAATTG+TGG | + | chr1.3:2592578-2592597 | MS.gene26979:intron | 30.0% | |
| GAAAATGAGAACAGAGAAAT+AGG | + | chr1.3:2592005-2592024 | MS.gene26979:intron | 30.0% | |
| GATTAAGGAATTGTTTGGAT+TGG | - | chr1.3:2590901-2590920 | None:intergenic | 30.0% | |
| GTCTTTCTATGCTTAATACA+AGG | - | chr1.3:2591735-2591754 | None:intergenic | 30.0% | |
| TACAACATTTAGTGATTGCA+GGG | - | chr1.3:2593122-2593141 | None:intergenic | 30.0% | |
| TGAGAAATAGAGTAGATTTG+AGG | + | chr1.3:2592058-2592077 | MS.gene26979:intron | 30.0% | |
| TGTTCATTATTAGGATCAGA+GGG | + | chr1.3:2591048-2591067 | MS.gene26979:CDS | 30.0% | |
| TTAGTACAAGCTAGCTATAT+TGG | + | chr1.3:2590477-2590496 | MS.gene26979:intron | 30.0% | |
| TTGTTCATTATTAGGATCAG+AGG | + | chr1.3:2591047-2591066 | MS.gene26979:CDS | 30.0% | |
| TTTGTTCAGTGAGTTATTCT+AGG | + | chr1.3:2591483-2591502 | MS.gene26979:intron | 30.0% | |
| ! | GCAAAATCTTCCTTGATTTT+GGG | - | chr1.3:2591197-2591216 | None:intergenic | 30.0% |
| ! | TGCAAAATCTTCCTTGATTT+TGG | - | chr1.3:2591198-2591217 | None:intergenic | 30.0% |
| !! | AAGTTGTTTTCAGCTTAAGT+AGG | - | chr1.3:2590799-2590818 | None:intergenic | 30.0% |
| !! | AGTTGTTTTCAGCTTAAGTA+GGG | - | chr1.3:2590798-2590817 | None:intergenic | 30.0% |
| !! | TTTAATTTGTGTGCAGCAAA+AGG | + | chr1.3:2590956-2590975 | MS.gene26979:intron | 30.0% |
| !! | TTTTGACTGCAGATCTTTAA+TGG | + | chr1.3:2592906-2592925 | MS.gene26979:intron | 30.0% |
| !!! | ATGTAATTTTAGGCCTTGTT+TGG | + | chr1.3:2590368-2590387 | MS.gene26979:intron | 30.0% |
| !!! | ATTGGTCGTTTTTCAATTGA+AGG | - | chr1.3:2592162-2592181 | None:intergenic | 30.0% |
| !!! | TGTGATACACTTGTGTTTTT+TGG | + | chr1.3:2591417-2591436 | MS.gene26979:intron | 30.0% |
| AACACAAGTGTATCACAATG+AGG | - | chr1.3:2591414-2591433 | None:intergenic | 35.0% | |
| ACAATAACAAGAAAACCACC+TGG | - | chr1.3:2591124-2591143 | None:intergenic | 35.0% | |
| AGAAATCATTATGTGGAAGG+TGG | + | chr1.3:2593451-2593470 | MS.gene26979:CDS | 35.0% | |
| AGACAACTCAATCATTGAAC+AGG | + | chr1.3:2593079-2593098 | MS.gene26979:CDS | 35.0% | |
| AGATCTGCAGTCAAAAGAAA+TGG | - | chr1.3:2592902-2592921 | None:intergenic | 35.0% | |
| AGCATAGAAAGACTATTCCA+AGG | + | chr1.3:2591742-2591761 | MS.gene26979:intron | 35.0% | |
| ATATTCCTTGGCGTATTGTT+TGG | - | chr1.3:2590315-2590334 | None:intergenic | 35.0% | |
| ATTCACGAGATACTAACAGT+TGG | + | chr1.3:2593352-2593371 | MS.gene26979:CDS | 35.0% | |
| CTACAACATTTAGTGATTGC+AGG | - | chr1.3:2593123-2593142 | None:intergenic | 35.0% | |
| CTATGCTTAATACAATCCCT+TGG | - | chr1.3:2591762-2591781 | None:intergenic | 35.0% | |
| CTGAAACAAGGAAACTCATT+TGG | + | chr1.3:2590282-2590301 | MS.gene26979:CDS | 35.0% | |
| CTGAACAAACCTTTAATCAG+AGG | - | chr1.3:2591472-2591491 | None:intergenic | 35.0% | |
| GATCAAAACCTCTGCTATAA+TGG | - | chr1.3:2592824-2592843 | None:intergenic | 35.0% | |
| GCATAGAAAGACTATTCCAA+GGG | + | chr1.3:2591743-2591762 | MS.gene26979:intron | 35.0% | |
| GCTTATTTGAGCTTATCTAC+AGG | - | chr1.3:2590879-2590898 | None:intergenic | 35.0% | |
| GGCTACATTGTAATATTGCA+TGG | - | chr1.3:2592871-2592890 | None:intergenic | 35.0% | |
| GTCAGTAGATAAGCTCAATT+AGG | + | chr1.3:2590758-2590777 | MS.gene26979:intron | 35.0% | |
| TAAAACTCTTAGGGTGTGTT+TGG | + | chr1.3:2591973-2591992 | MS.gene26979:intron | 35.0% | |
| TACCTGATCATCATATTCCT+TGG | - | chr1.3:2590327-2590346 | None:intergenic | 35.0% | |
| TAGGAACCAAACAACAAAGT+CGG | - | chr1.3:2593190-2593209 | None:intergenic | 35.0% | |
| TCAATTAGGCCAATCAAATC+AGG | + | chr1.3:2590772-2590791 | MS.gene26979:intron | 35.0% | |
| TCAGGTGTAACTATATCTCA+AGG | - | chr1.3:2591619-2591638 | None:intergenic | 35.0% | |
| TCATAGGTACACTTAACAGT+GGG | - | chr1.3:2591581-2591600 | None:intergenic | 35.0% | |
| TTGAACAGGTTTGTCTGATT+TGG | + | chr1.3:2593093-2593112 | MS.gene26979:intron | 35.0% | |
| TTTCTTCTTCATACCACCTA+GGG | - | chr1.3:2593431-2593450 | None:intergenic | 35.0% | |
| TTTGACTGACGTTATCCAAT+GGG | + | chr1.3:2593287-2593306 | MS.gene26979:intron | 35.0% | |
| ! | AAATCACATCAAAGTGCTTC+AGG | - | chr1.3:2591637-2591656 | None:intergenic | 35.0% |
| ! | ACTTTGTAAATGGCGTTTTG+TGG | + | chr1.3:2590503-2590522 | MS.gene26979:intron | 35.0% |
| ! | CCTTTTCTGCTTCTTCAAAA+CGG | - | chr1.3:2590204-2590223 | None:intergenic | 35.0% |
| ! | CTCTCTACTTGTTACTAGTT+AGG | + | chr1.3:2591917-2591936 | MS.gene26979:intron | 35.0% |
| ! | GTATACTAGTTATTTCCAGG+TGG | + | chr1.3:2591106-2591125 | MS.gene26979:intron | 35.0% |
| ! | GTTGAGCCTTATGTTACATA+CGG | + | chr1.3:2592975-2592994 | MS.gene26979:CDS | 35.0% |
| ! | TTGAGCCTTATGTTACATAC+GGG | + | chr1.3:2592976-2592995 | MS.gene26979:CDS | 35.0% |
| ! | TTTGGTTCAGCAGAGAATTA+GGG | - | chr1.3:2592699-2592718 | None:intergenic | 35.0% |
| ! | TTTTCTTCTTCATACCACCT+AGG | - | chr1.3:2593432-2593451 | None:intergenic | 35.0% |
| !! | AGTAGATTTGAGGTACTGTT+TGG | + | chr1.3:2592068-2592087 | MS.gene26979:intron | 35.0% |
| !! | TATAATGGGTCTATCAAGGA+TGG | - | chr1.3:2592809-2592828 | None:intergenic | 35.0% |
| !!! | TTTTTGAGTCTTCGCAAATC+TGG | - | chr1.3:2592644-2592663 | None:intergenic | 35.0% |
| AACAGTCCAGATTCTCTGTA+TGG | + | chr1.3:2593224-2593243 | MS.gene26979:intron | 40.0% | |
| AAGCGTGAAGCTAAACTCAA+GGG | + | chr1.3:2590993-2591012 | MS.gene26979:CDS | 40.0% | |
| AATGGTGATCCATTCCATCT+AGG | - | chr1.3:2593167-2593186 | None:intergenic | 40.0% | |
| ACAACACCATACAGAGAATC+TGG | - | chr1.3:2593233-2593252 | None:intergenic | 40.0% | |
| ACATCAACGAACTCATCAGA+AGG | + | chr1.3:2593497-2593516 | MS.gene26979:CDS | 40.0% | |
| ACCAAACAACAAAGTCGGAA+TGG | - | chr1.3:2593185-2593204 | None:intergenic | 40.0% | |
| AGAAGAAGAGAGCTGAAACA+AGG | + | chr1.3:2590270-2590289 | MS.gene26979:CDS | 40.0% | |
| AGCAGAAAAGGAACGAAGAA+TGG | + | chr1.3:2590213-2590232 | MS.gene26979:CDS | 40.0% | |
| AGCATAGAAAGACTGTTCCA+AGG | + | chr1.3:2591775-2591794 | MS.gene26979:intron | 40.0% | |
| AGGGAATTGATCTACAAGAG+GGG | + | chr1.3:2593020-2593039 | MS.gene26979:CDS | 40.0% | |
| ATGAACAAGAGCTTAGCTTC+AGG | - | chr1.3:2591035-2591054 | None:intergenic | 40.0% | |
| ATGGACTCTAACACTGTGTT+TGG | - | chr1.3:2592790-2592809 | None:intergenic | 40.0% | |
| CACATCAAGATAAGCACTTG+TGG | - | chr1.3:2590561-2590580 | None:intergenic | 40.0% | |
| CAGGGAATTGATCTACAAGA+GGG | + | chr1.3:2593019-2593038 | MS.gene26979:CDS | 40.0% | |
| CGAAGACTCAAAAAAGCAGT+AGG | + | chr1.3:2592650-2592669 | MS.gene26979:intron | 40.0% | |
| CTTTGACTGACGTTATCCAA+TGG | + | chr1.3:2593286-2593305 | MS.gene26979:intron | 40.0% | |
| GCAGAAAAGGAACGAAGAAT+GGG | + | chr1.3:2590214-2590233 | MS.gene26979:CDS | 40.0% | |
| GCATAGAAAGACTGTTCCAA+GGG | + | chr1.3:2591776-2591795 | MS.gene26979:intron | 40.0% | |
| GTCATAGGTACACTTAACAG+TGG | - | chr1.3:2591582-2591601 | None:intergenic | 40.0% | |
| GTCGAAAGAGGAAGTGAAAA+CGG | + | chr1.3:2590166-2590185 | MS.gene26979:CDS | 40.0% | |
| TCAGGGAATTGATCTACAAG+AGG | + | chr1.3:2593018-2593037 | MS.gene26979:CDS | 40.0% | |
| TCTAACACTGTGTTTGGTAG+AGG | - | chr1.3:2592784-2592803 | None:intergenic | 40.0% | |
| TCTTTACTGTCAGACCTAGA+TGG | + | chr1.3:2593150-2593169 | MS.gene26979:intron | 40.0% | |
| TGAACAAGAGCTTAGCTTCA+GGG | - | chr1.3:2591034-2591053 | None:intergenic | 40.0% | |
| TGATAGACCCATTATAGCAG+AGG | + | chr1.3:2592813-2592832 | MS.gene26979:intron | 40.0% | |
| TGCAATGCACCTCTGATTAA+AGG | + | chr1.3:2591460-2591479 | MS.gene26979:intron | 40.0% | |
| TTCGCAAATCTGGAGAGAAA+GGG | - | chr1.3:2592634-2592653 | None:intergenic | 40.0% | |
| TTCTTCTTCATACCACCTAG+GGG | - | chr1.3:2593430-2593449 | None:intergenic | 40.0% | |
| ! | GTTTGGTTCAGCAGAGAATT+AGG | - | chr1.3:2592700-2592719 | None:intergenic | 40.0% |
| ! | TAAGTAGGGCCTGATTTGAT+TGG | - | chr1.3:2590784-2590803 | None:intergenic | 40.0% |
| ! | TGCTTCTTCAAAACGGATTC+AGG | - | chr1.3:2590197-2590216 | None:intergenic | 40.0% |
| !! | ACCATTCCGACTTTGTTGTT+TGG | + | chr1.3:2593181-2593200 | MS.gene26979:intron | 40.0% |
| !! | CTGCTATAATGGGTCTATCA+AGG | - | chr1.3:2592813-2592832 | None:intergenic | 40.0% |
| !! | CTGTTCTAGCTTGAGCAAAT+AGG | - | chr1.3:2593209-2593228 | None:intergenic | 40.0% |
| !!! | CCGTTTTGAAGAAGCAGAAA+AGG | + | chr1.3:2590201-2590220 | MS.gene26979:CDS | 40.0% |
| AAGGAACGAAGAATGGGCAT+TGG | + | chr1.3:2590220-2590239 | MS.gene26979:CDS | 45.0% | |
| ACGCTATGGACCCAAAATCA+AGG | + | chr1.3:2591184-2591203 | MS.gene26979:CDS | 45.0% | |
| ACTAGCAAAACAACCTCCCT+TGG | - | chr1.3:2591795-2591814 | None:intergenic | 45.0% | |
| ACTGTCAGACCTAGATGGAA+TGG | + | chr1.3:2593155-2593174 | MS.gene26979:intron | 45.0% | |
| ATTGGTGAAGAAGCAGGAAC+AGG | + | chr1.3:2590238-2590257 | MS.gene26979:CDS | 45.0% | |
| CGCCAAGGAATATGATGATC+AGG | + | chr1.3:2590322-2590341 | MS.gene26979:CDS | 45.0% | |
| CTTACGGCAATCATGTGTGT+TGG | + | chr1.3:2592506-2592525 | MS.gene26979:intron | 45.0% | |
| CTTCGCAAATCTGGAGAGAA+AGG | - | chr1.3:2592635-2592654 | None:intergenic | 45.0% | |
| GAAAGAGGAAGTGAAAACGG+TGG | + | chr1.3:2590169-2590188 | MS.gene26979:CDS | 45.0% | |
| GAAGCGTGAAGCTAAACTCA+AGG | + | chr1.3:2590992-2591011 | MS.gene26979:CDS | 45.0% | |
| GGGTACCCGTATGTAACATA+AGG | - | chr1.3:2592984-2593003 | None:intergenic | 45.0% | |
| TAACATAAGGCTCAACCCTG+TGG | - | chr1.3:2592971-2592990 | None:intergenic | 45.0% | |
| TAGAAAGACTGTTCCAAGGG+AGG | + | chr1.3:2591779-2591798 | MS.gene26979:intron | 45.0% | |
| TAGAGCCAAACAATACGCCA+AGG | + | chr1.3:2590307-2590326 | MS.gene26979:CDS | 45.0% | |
| TATCCAATGGGCAGGTTCTT+GGG | + | chr1.3:2593299-2593318 | MS.gene26979:intron | 45.0% | |
| TTATCCAATGGGCAGGTTCT+TGG | + | chr1.3:2593298-2593317 | MS.gene26979:intron | 45.0% | |
| TTGATCTACAAGAGGGGCTA+CGG | + | chr1.3:2593026-2593045 | MS.gene26979:CDS | 45.0% | |
| ! | TGCAGCAAAAGGAGTTGATC+AGG | + | chr1.3:2590967-2590986 | MS.gene26979:intron | 45.0% |
| !! | TTGTTTGCCTCTCTGAAGTG+AGG | - | chr1.3:2593379-2593398 | None:intergenic | 45.0% |
| !! | AATAATTGTATAAATTAAAA+AGG | - | chr1.3:2590930-2590949 | None:intergenic | 5.0% |
| AACCCTGTGGAGCATGTTCA+CGG | - | chr1.3:2592958-2592977 | None:intergenic | 50.0% | |
| ACTGACGTTATCCAATGGGC+AGG | + | chr1.3:2593291-2593310 | MS.gene26979:intron | 50.0% | |
| AGTTGGTCCTCACTTCAGAG+AGG | + | chr1.3:2593369-2593388 | MS.gene26979:CDS | 50.0% | |
| CCCTGACGCTCTTCAGATTA+GGG | - | chr1.3:2593004-2593023 | None:intergenic | 50.0% | |
| CGTGAAGCTAAACTCAAGGG+TGG | + | chr1.3:2590996-2591015 | MS.gene26979:CDS | 50.0% | |
| CTTTGAGCTTGAAAGGCCAC+AGG | - | chr1.3:2593405-2593424 | None:intergenic | 50.0% | |
| GAAGAGAGACAGACAGACGT+GGG | - | chr1.3:2592677-2592696 | None:intergenic | 50.0% | |
| GAGAGGCAAACAACTTCCTG+TGG | + | chr1.3:2593386-2593405 | MS.gene26979:CDS | 50.0% | |
| TACCGTGAACATGCTCCACA+GGG | + | chr1.3:2592953-2592972 | MS.gene26979:CDS | 50.0% | |
| TCCCTGACGCTCTTCAGATT+AGG | - | chr1.3:2593005-2593024 | None:intergenic | 50.0% | |
| TTCAAGCTCAAAGCTCCCCT+AGG | + | chr1.3:2593412-2593431 | MS.gene26979:CDS | 50.0% | |
| ! | AAGGTGGTGATGCTGGAAAC+AGG | + | chr1.3:2593467-2593486 | MS.gene26979:CDS | 50.0% |
| ! | AGGTGGTGATGCTGGAAACA+GGG | + | chr1.3:2593468-2593487 | MS.gene26979:CDS | 50.0% |
| ! | TATGTGGAAGGTGGTGATGC+TGG | + | chr1.3:2593460-2593479 | MS.gene26979:CDS | 50.0% |
| !! | ACCCTAATCTGAAGAGCGTC+AGG | + | chr1.3:2593000-2593019 | MS.gene26979:CDS | 50.0% |
| !! | AGGGGAGCTTTGAGCTTGAA+AGG | - | chr1.3:2593412-2593431 | None:intergenic | 50.0% |
| !! | ATGGGCATTGGTGAAGAAGC+AGG | + | chr1.3:2590232-2590251 | MS.gene26979:CDS | 50.0% |
| !! | CCCTAATCTGAAGAGCGTCA+GGG | + | chr1.3:2593001-2593020 | MS.gene26979:CDS | 50.0% |
| !! | GCAGCTTTTGCGTTTGAGAC+AGG | + | chr1.3:2591215-2591234 | MS.gene26979:CDS | 50.0% |
| AAGCTCAAAGCTCCCCTAGG+TGG | + | chr1.3:2593415-2593434 | MS.gene26979:CDS | 55.0% | |
| CTACCGTGAACATGCTCCAC+AGG | + | chr1.3:2592952-2592971 | MS.gene26979:CDS | 55.0% | |
| CTTCCCAAGAACCTGCCCAT+TGG | - | chr1.3:2593305-2593324 | None:intergenic | 55.0% | |
| GGAAGAGAGACAGACAGACG+TGG | - | chr1.3:2592678-2592697 | None:intergenic | 55.0% | |
| GGGCAGGTTCTTGGGAAGCA+CGG | + | chr1.3:2593307-2593326 | MS.gene26979:intron | 60.0% | |
| GGGGCTACGGCAAAGTTGAC+AGG | + | chr1.3:2593039-2593058 | MS.gene26979:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 2590164 | 2593528 | 2590164 | ID=MS.gene26979 |
| chr1.3 | mRNA | 2590164 | 2593528 | 2590164 | ID=MS.gene26979.t1;Parent=MS.gene26979 |
| chr1.3 | exon | 2590164 | 2590343 | 2590164 | ID=MS.gene26979.t1.exon1;Parent=MS.gene26979.t1 |
| chr1.3 | CDS | 2590164 | 2590343 | 2590164 | ID=cds.MS.gene26979.t1;Parent=MS.gene26979.t1 |
| chr1.3 | exon | 2590972 | 2591069 | 2590972 | ID=MS.gene26979.t1.exon2;Parent=MS.gene26979.t1 |
| chr1.3 | CDS | 2590972 | 2591069 | 2590972 | ID=cds.MS.gene26979.t1;Parent=MS.gene26979.t1 |
| chr1.3 | exon | 2591179 | 2591236 | 2591179 | ID=MS.gene26979.t1.exon3;Parent=MS.gene26979.t1 |
| chr1.3 | CDS | 2591179 | 2591236 | 2591179 | ID=cds.MS.gene26979.t1;Parent=MS.gene26979.t1 |
| chr1.3 | exon | 2592918 | 2593100 | 2592918 | ID=MS.gene26979.t1.exon4;Parent=MS.gene26979.t1 |
| chr1.3 | CDS | 2592918 | 2593100 | 2592918 | ID=cds.MS.gene26979.t1;Parent=MS.gene26979.t1 |
| chr1.3 | exon | 2593313 | 2593528 | 2593313 | ID=MS.gene26979.t1.exon5;Parent=MS.gene26979.t1 |
| chr1.3 | CDS | 2593313 | 2593528 | 2593313 | ID=cds.MS.gene26979.t1;Parent=MS.gene26979.t1 |
| Gene Sequence |
| Protein sequence |
