Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24260.t1 | XP_024631234.1 | 98.8 | 244 | 3 | 0 | 1 | 244 | 1 | 244 | 1.80E-124 | 455.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24260.t1 | Q9LHP1 | 79.9 | 244 | 49 | 0 | 1 | 244 | 1 | 244 | 5.7e-111 | 401.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24260.t1 | A0A396JGV3 | 98.8 | 244 | 3 | 0 | 1 | 244 | 1 | 244 | 1.3e-124 | 455.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049824 | MS.gene24260 | 0.808391 | 3.17E-50 | -1.69E-46 |
| MS.gene049825 | MS.gene24260 | 0.853614 | 2.13E-61 | -1.69E-46 |
| MS.gene049873 | MS.gene24260 | 0.850893 | 1.26E-60 | -1.69E-46 |
| MS.gene050303 | MS.gene24260 | 0.811526 | 6.70E-51 | -1.69E-46 |
| MS.gene050916 | MS.gene24260 | 0.818546 | 1.85E-52 | -1.69E-46 |
| MS.gene051330 | MS.gene24260 | 0.824064 | 9.88E-54 | -1.69E-46 |
| MS.gene05134 | MS.gene24260 | 0.808462 | 3.06E-50 | -1.69E-46 |
| MS.gene051700 | MS.gene24260 | 0.823664 | 1.23E-53 | -1.69E-46 |
| MS.gene051903 | MS.gene24260 | 0.826435 | 2.72E-54 | -1.69E-46 |
| MS.gene052519 | MS.gene24260 | 0.801849 | 7.42E-49 | -1.69E-46 |
| MS.gene052947 | MS.gene24260 | 0.841067 | 5.95E-58 | -1.69E-46 |
| MS.gene053226 | MS.gene24260 | 0.801857 | 7.39E-49 | -1.69E-46 |
| MS.gene055466 | MS.gene24260 | 0.801158 | 1.03E-48 | -1.69E-46 |
| MS.gene055468 | MS.gene24260 | 0.803292 | 3.74E-49 | -1.69E-46 |
| MS.gene055555 | MS.gene24260 | 0.829171 | 5.98E-55 | -1.69E-46 |
| MS.gene055580 | MS.gene24260 | -0.831976 | 1.23E-55 | -1.69E-46 |
| MS.gene055808 | MS.gene24260 | 0.845664 | 3.53E-59 | -1.69E-46 |
| MS.gene056043 | MS.gene24260 | -0.824993 | 5.97E-54 | -1.69E-46 |
| MS.gene056075 | MS.gene24260 | 0.806839 | 6.77E-50 | -1.69E-46 |
| MS.gene056091 | MS.gene24260 | 0.856929 | 2.31E-62 | -1.69E-46 |
| MS.gene056631 | MS.gene24260 | 0.813069 | 3.08E-51 | -1.69E-46 |
| MS.gene057705 | MS.gene24260 | 0.804626 | 1.97E-49 | -1.69E-46 |
| MS.gene058037 | MS.gene24260 | 0.809344 | 1.98E-50 | -1.69E-46 |
| MS.gene058906 | MS.gene24260 | 0.812236 | 4.69E-51 | -1.69E-46 |
| MS.gene058908 | MS.gene24260 | 0.813103 | 3.03E-51 | -1.69E-46 |
| MS.gene058911 | MS.gene24260 | 0.812952 | 3.27E-51 | -1.69E-46 |
| MS.gene05954 | MS.gene24260 | 0.833068 | 6.59E-56 | -1.69E-46 |
| MS.gene06001 | MS.gene24260 | 0.85999 | 2.82E-63 | -1.69E-46 |
| MS.gene060429 | MS.gene24260 | 0.895791 | 6.85E-76 | -1.69E-46 |
| MS.gene060917 | MS.gene24260 | 0.833331 | 5.67E-56 | -1.69E-46 |
| MS.gene061266 | MS.gene24260 | 0.809651 | 1.70E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene66047 | MS.gene24260 | PPI |
| MS.gene022752 | MS.gene24260 | PPI |
| MS.gene018553 | MS.gene24260 | PPI |
| MS.gene56166 | MS.gene24260 | PPI |
| MS.gene39294 | MS.gene24260 | PPI |
| MS.gene45646 | MS.gene24260 | PPI |
| MS.gene054580 | MS.gene24260 | PPI |
| MS.gene034156 | MS.gene24260 | PPI |
| MS.gene81068 | MS.gene24260 | PPI |
| MS.gene78232 | MS.gene24260 | PPI |
| MS.gene26979 | MS.gene24260 | PPI |
| MS.gene050985 | MS.gene24260 | PPI |
| MS.gene64512 | MS.gene24260 | PPI |
| MS.gene053148 | MS.gene24260 | PPI |
| MS.gene061905 | MS.gene24260 | PPI |
| MS.gene65129 | MS.gene24260 | PPI |
| MS.gene020215 | MS.gene24260 | PPI |
| MS.gene55098 | MS.gene24260 | PPI |
| MS.gene034157 | MS.gene24260 | PPI |
| MS.gene77207 | MS.gene24260 | PPI |
| MS.gene24260 | MS.gene054580 | PPI |
| MS.gene037074 | MS.gene24260 | PPI |
| MS.gene08488 | MS.gene24260 | PPI |
| MS.gene09845 | MS.gene24260 | PPI |
| MS.gene25010 | MS.gene24260 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24260.t1 | MTR_1g022385 | 99.180 | 244 | 2 | 0 | 1 | 244 | 32 | 275 | 2.38e-179 | 493 |
| MS.gene24260.t1 | MTR_2g038250 | 97.951 | 244 | 5 | 0 | 1 | 244 | 1 | 244 | 1.71e-177 | 487 |
| MS.gene24260.t1 | MTR_4g008160 | 87.137 | 241 | 31 | 0 | 4 | 244 | 3 | 243 | 1.79e-159 | 442 |
| MS.gene24260.t1 | MTR_7g059170 | 46.383 | 235 | 125 | 1 | 10 | 244 | 13 | 246 | 7.20e-74 | 225 |
| MS.gene24260.t1 | MTR_1g022375 | 66.667 | 102 | 34 | 0 | 133 | 234 | 55 | 156 | 7.03e-43 | 143 |
| MS.gene24260.t1 | MTR_1g108785 | 40.179 | 112 | 13 | 3 | 126 | 236 | 1 | 59 | 1.71e-15 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24260.t1 | AT3G13580 | 82.787 | 244 | 42 | 0 | 1 | 244 | 1 | 244 | 4.79e-154 | 428 |
| MS.gene24260.t1 | AT3G13580 | 82.787 | 244 | 42 | 0 | 1 | 244 | 1 | 244 | 4.79e-154 | 428 |
| MS.gene24260.t1 | AT3G13580 | 82.787 | 244 | 42 | 0 | 1 | 244 | 1 | 244 | 4.79e-154 | 428 |
| MS.gene24260.t1 | AT3G13580 | 82.787 | 244 | 42 | 0 | 1 | 244 | 1 | 244 | 4.79e-154 | 428 |
| MS.gene24260.t1 | AT3G13580 | 82.787 | 244 | 42 | 0 | 1 | 244 | 1 | 244 | 4.79e-154 | 428 |
| MS.gene24260.t1 | AT3G13580 | 82.787 | 244 | 42 | 0 | 1 | 244 | 1 | 244 | 4.79e-154 | 428 |
| MS.gene24260.t1 | AT3G13580 | 82.787 | 244 | 42 | 0 | 1 | 244 | 1 | 244 | 4.79e-154 | 428 |
| MS.gene24260.t1 | AT3G13580 | 82.787 | 244 | 42 | 0 | 1 | 244 | 1 | 244 | 4.79e-154 | 428 |
| MS.gene24260.t1 | AT3G13580 | 82.787 | 244 | 42 | 0 | 1 | 244 | 1 | 244 | 4.79e-154 | 428 |
| MS.gene24260.t1 | AT2G01250 | 84.583 | 240 | 37 | 0 | 5 | 244 | 3 | 242 | 9.92e-152 | 422 |
| MS.gene24260.t1 | AT2G44120 | 83.750 | 240 | 39 | 0 | 5 | 244 | 3 | 242 | 4.86e-151 | 420 |
| MS.gene24260.t1 | AT2G44120 | 83.750 | 240 | 39 | 0 | 5 | 244 | 8 | 247 | 6.78e-151 | 420 |
| MS.gene24260.t1 | AT2G01250 | 80.000 | 175 | 35 | 0 | 5 | 179 | 3 | 177 | 9.39e-97 | 281 |
| MS.gene24260.t1 | AT1G80750 | 42.915 | 247 | 138 | 2 | 1 | 244 | 1 | 247 | 1.13e-63 | 199 |
Find 64 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAAAATCTTCCTTGATTT+TGG | 0.006132 | 1.1:-1902968 | None:intergenic |
| CTAAGCTCTTGTTCATTATT+AGG | 0.173523 | 1.1:+1902812 | MS.gene24260:CDS |
| TGCTTCTTCAGAACGGATTC+AGG | 0.238163 | 1.1:-1901968 | None:intergenic |
| CCCTGACGCTCTTCAGATTA+GGG | 0.318959 | 1.1:-1904762 | None:intergenic |
| TTATCCAATGGGCAGGTTCT+TGG | 0.334500 | 1.1:+1905059 | MS.gene24260:intron |
| ATATTCCTTGGCGTATTGTT+TGG | 0.342275 | 1.1:-1902086 | None:intergenic |
| TATCCAATGGGCAGGTTCTT+GGG | 0.364373 | 1.1:+1905060 | MS.gene24260:intron |
| CTGAAACAAGGAAACTCATT+TGG | 0.390452 | 1.1:+1902056 | MS.gene24260:CDS |
| TCCCTGACGCTCTTCAGATT+AGG | 0.391787 | 1.1:-1904763 | None:intergenic |
| AAGGTGGTGATGCTGGAAAC+AGG | 0.400679 | 1.1:+1905228 | MS.gene24260:CDS |
| ACCCTAATCTGAAGAGCGTC+AGG | 0.410603 | 1.1:+1904761 | MS.gene24260:CDS |
| CGCCAAGGAATATGATGATC+AGG | 0.420081 | 1.1:+1902096 | MS.gene24260:CDS |
| ATGAACAAGAGCTTAGCTTC+AGG | 0.424828 | 1.1:-1902805 | None:intergenic |
| TTTCTTCTTCATACCACCTA+GGG | 0.429478 | 1.1:-1905189 | None:intergenic |
| AGACAACTCAATCATTGAAC+AGG | 0.442244 | 1.1:+1904840 | MS.gene24260:CDS |
| TGAACAAGAGCTTAGCTTCA+GGG | 0.470751 | 1.1:-1902804 | None:intergenic |
| AGCAGAAAAGGAATGAAGAA+TGG | 0.478103 | 1.1:+1901987 | MS.gene24260:CDS |
| CCGTTCTGAAGAAGCAGAAA+AGG | 0.486187 | 1.1:+1901975 | MS.gene24260:CDS |
| TATGTGGAAGGTGGTGATGC+TGG | 0.489381 | 1.1:+1905221 | MS.gene24260:CDS |
| ATTGGTGAAGAAGCAGGAAC+AGG | 0.496788 | 1.1:+1902012 | MS.gene24260:CDS |
| AACCCTGTGGAGCATGTTCA+CGG | 0.497828 | 1.1:-1904716 | None:intergenic |
| TTGATCTACAAGAGGGGCTA+CGG | 0.499583 | 1.1:+1904787 | MS.gene24260:CDS |
| CTACCGTGAACATGCTCCAC+AGG | 0.502553 | 1.1:+1904713 | MS.gene24260:CDS |
| GGGTACCCGTATGTAACATA+AGG | 0.504429 | 1.1:-1904742 | None:intergenic |
| GCAGAAAAGGAATGAAGAAT+GGG | 0.508980 | 1.1:+1901988 | MS.gene24260:CDS |
| TACCTGATCATCATATTCCT+TGG | 0.513381 | 1.1:-1902098 | None:intergenic |
| GGGGCTACGGCAAAGTTGAC+AGG | 0.514631 | 1.1:+1904800 | MS.gene24260:CDS |
| TGCAGCAAAAGGAGTTGATC+AGG | 0.517555 | 1.1:+1902740 | MS.gene24260:intron |
| ATGGGCATTGGTGAAGAAGC+AGG | 0.518449 | 1.1:+1902006 | MS.gene24260:CDS |
| GTTGAGCCTTATGTTACATA+CGG | 0.518747 | 1.1:+1904736 | MS.gene24260:CDS |
| AGGGGAGCTTTGAGCTTGAA+AGG | 0.525834 | 1.1:-1905170 | None:intergenic |
| GTCGAAAGAGGAAGTGAAAA+CGG | 0.538106 | 1.1:+1901940 | MS.gene24260:CDS |
| ACGCTATGGACCCAAAATCA+AGG | 0.543591 | 1.1:+1902957 | MS.gene24260:CDS |
| AAAAGAAATCATTATGTGGA+AGG | 0.546296 | 1.1:+1905209 | MS.gene24260:CDS |
| GATTTGAAGGATGTCGAAAG+AGG | 0.555198 | 1.1:+1901928 | None:intergenic |
| TTGTTCATTATTAGGATCAG+AGG | 0.561223 | 1.1:+1902820 | MS.gene24260:CDS |
| CTTTGAGCTTGAAAGGCCAC+AGG | 0.568038 | 1.1:-1905163 | None:intergenic |
| GAAGAAAAGAAATCATTATG+TGG | 0.573776 | 1.1:+1905205 | MS.gene24260:CDS |
| TGTTCATTATTAGGATCAGA+GGG | 0.574120 | 1.1:+1902821 | MS.gene24260:CDS |
| AAGGAATGAAGAATGGGCAT+TGG | 0.577675 | 1.1:+1901994 | MS.gene24260:CDS |
| GAAGCGTGAAGCTAAACTCA+AGG | 0.589756 | 1.1:+1902765 | MS.gene24260:CDS |
| AGAAATCATTATGTGGAAGG+TGG | 0.590613 | 1.1:+1905212 | MS.gene24260:CDS |
| AGAAGAAGAGAGCTGAAACA+AGG | 0.596539 | 1.1:+1902044 | MS.gene24260:CDS |
| TTGAGCCTTATGTTACATAC+GGG | 0.597990 | 1.1:+1904737 | MS.gene24260:CDS |
| TTGTTTGCCTCTCTGAAGTG+AGG | 0.607151 | 1.1:-1905137 | None:intergenic |
| GGGCAGGTTCTTGGGAAGCA+CGG | 0.607398 | 1.1:+1905068 | MS.gene24260:intron |
| TTCTTCTTCATACCACCTAG+GGG | 0.609907 | 1.1:-1905188 | None:intergenic |
| TTCAAGCTCAAAGCTCCCCT+AGG | 0.610220 | 1.1:+1905173 | MS.gene24260:CDS |
| CAGGGAATTGATCTACAAGA+GGG | 0.615110 | 1.1:+1904780 | MS.gene24260:CDS |
| GAGAGGCAAACAACTTCCTG+TGG | 0.626203 | 1.1:+1905147 | MS.gene24260:CDS |
| ACATCAACGAACTCATCAGA+AGG | 0.630261 | 1.1:+1905258 | MS.gene24260:CDS |
| TCAGGGAATTGATCTACAAG+AGG | 0.639447 | 1.1:+1904779 | MS.gene24260:CDS |
| CGTGAAGCTAAACTCAAGGG+TGG | 0.639969 | 1.1:+1902769 | MS.gene24260:CDS |
| AGGTGGTGATGCTGGAAACA+GGG | 0.642090 | 1.1:+1905229 | MS.gene24260:CDS |
| TACCGTGAACATGCTCCACA+GGG | 0.645382 | 1.1:+1904714 | MS.gene24260:CDS |
| AAGCTCAAAGCTCCCCTAGG+TGG | 0.657354 | 1.1:+1905176 | MS.gene24260:CDS |
| ATTCACGAGATACTAACAGT+TGG | 0.659550 | 1.1:+1905113 | MS.gene24260:CDS |
| TAGAGCCAAACAATACGCCA+AGG | 0.659987 | 1.1:+1902081 | MS.gene24260:CDS |
| AAGCGTGAAGCTAAACTCAA+GGG | 0.663061 | 1.1:+1902766 | MS.gene24260:CDS |
| CCCTAATCTGAAGAGCGTCA+GGG | 0.672345 | 1.1:+1904762 | MS.gene24260:CDS |
| TAACATAAGGCTCAACCCTG+TGG | 0.679817 | 1.1:-1904729 | None:intergenic |
| AGGGAATTGATCTACAAGAG+GGG | 0.717541 | 1.1:+1904781 | MS.gene24260:CDS |
| AGTTGGTCCTCACTTCAGAG+AGG | 0.754549 | 1.1:+1905130 | MS.gene24260:CDS |
| GAAAGAGGAAGTGAAAACGG+TGG | 0.767520 | 1.1:+1901943 | MS.gene24260:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTGATTATGTAATTTT+AGG | + | chr1.1:1902132-1902151 | MS.gene24260:intron | 10.0% |
| !! | AAATAATAAATCAATACTGT+AGG | - | chr1.1:1902855-1902874 | None:intergenic | 15.0% |
| !! | AATAACAAAATATTATGCAT+TGG | - | chr1.1:1903941-1903960 | None:intergenic | 15.0% |
| !!! | CAAATAATTTTATTTAGAAG+AGG | - | chr1.1:1903964-1903983 | None:intergenic | 15.0% |
| !!! | GTATAAATTAAAAAGGTATA+TGG | - | chr1.1:1902696-1902715 | None:intergenic | 15.0% |
| !!! | TACTTCTTTTTATTTTCTTA+CGG | + | chr1.1:1904249-1904268 | MS.gene24260:intron | 15.0% |
| !!! | TTATTGTTGTTTTAATTCAT+GGG | + | chr1.1:1902910-1902929 | MS.gene24260:intron | 15.0% |
| !! | AAATAACTATACATTGTCAT+AGG | - | chr1.1:1903359-1903378 | None:intergenic | 20.0% |
| !!! | ATAGTATAATAGTTATTTCC+AGG | + | chr1.1:1902876-1902895 | MS.gene24260:intron | 20.0% |
| !!! | GTAACTTTTTAGTGTATAAT+TGG | + | chr1.1:1903092-1903111 | MS.gene24260:intron | 20.0% |
| !!! | GTTATTGTTGTTTTAATTCA+TGG | + | chr1.1:1902909-1902928 | MS.gene24260:intron | 20.0% |
| !!! | TTAAAAAGGTATATGGATTA+AGG | - | chr1.1:1902689-1902708 | None:intergenic | 20.0% |
| ! | AAAAGAAATCATTATGTGGA+AGG | + | chr1.1:1905209-1905228 | MS.gene24260:CDS | 25.0% |
| ! | AAACTAAACAAGTATGAAAG+AGG | + | chr1.1:1904319-1904338 | MS.gene24260:intron | 25.0% |
| ! | AACTTACAACTAAAACTCTT+AGG | + | chr1.1:1903726-1903745 | MS.gene24260:intron | 25.0% |
| ! | AATGTAACATTTCTTCAGTT+TGG | - | chr1.1:1904480-1904499 | None:intergenic | 25.0% |
| ! | ACTTACAACTAAAACTCTTA+GGG | + | chr1.1:1903727-1903746 | MS.gene24260:intron | 25.0% |
| ! | AGTCTTTCTATGTTTAATAC+AGG | + | chr1.1:1903430-1903449 | MS.gene24260:intron | 25.0% |
| ! | ATATTGGAGAACTTTGTAAA+TGG | + | chr1.1:1902266-1902285 | MS.gene24260:intron | 25.0% |
| ! | ATGAAAGAGGAAAAAGAAAA+GGG | + | chr1.1:1904332-1904351 | MS.gene24260:intron | 25.0% |
| ! | GAAGAAAAGAAATCATTATG+TGG | + | chr1.1:1905205-1905224 | MS.gene24260:CDS | 25.0% |
| ! | GTCTTTCTATGTTTAATACA+GGG | + | chr1.1:1903431-1903450 | MS.gene24260:intron | 25.0% |
| ! | TATGAAAGAGGAAAAAGAAA+AGG | + | chr1.1:1904331-1904350 | MS.gene24260:intron | 25.0% |
| ! | TCAAAAGAAATGGAAGAATA+AGG | - | chr1.1:1904653-1904672 | None:intergenic | 25.0% |
| ! | TCTTTCTATGCTTAATACAA+GGG | - | chr1.1:1903497-1903516 | None:intergenic | 25.0% |
| ! | TCTTTCTATGTTTAATACAG+GGG | + | chr1.1:1903432-1903451 | MS.gene24260:intron | 25.0% |
| ! | TGAAAACAACTTATGAACAA+TGG | + | chr1.1:1902580-1902599 | MS.gene24260:intron | 25.0% |
| !! | ATATGGATTAAGGAATTGTT+TGG | - | chr1.1:1902679-1902698 | None:intergenic | 25.0% |
| !!! | CATTCAGATTGTTTTTTGTT+TGG | + | chr1.1:1903014-1903033 | MS.gene24260:intron | 25.0% |
| !!! | GCTTACATAAGCTATTTTTA+CGG | + | chr1.1:1902359-1902378 | MS.gene24260:intron | 25.0% |
| !!! | TAATTTTAGTATCAACGCTA+TGG | + | chr1.1:1902943-1902962 | MS.gene24260:intron | 25.0% |
| !!! | TATGTAATTTTAGGCTTGTT+TGG | + | chr1.1:1902141-1902160 | MS.gene24260:intron | 25.0% |
| AGTTGTGATGTTATCAAACA+TGG | - | chr1.1:1903710-1903729 | None:intergenic | 30.0% | |
| ATTCTTCAACACAGTATTAG+AGG | - | chr1.1:1904609-1904628 | None:intergenic | 30.0% | |
| CAATCACTAAATGTTGTAGT+CGG | + | chr1.1:1904885-1904904 | MS.gene24260:intron | 30.0% | |
| CTAAGCTCTTGTTCATTATT+AGG | + | chr1.1:1902812-1902831 | MS.gene24260:CDS | 30.0% | |
| GAAAAAGAAAAGGGTAATTG+TGG | + | chr1.1:1904341-1904360 | MS.gene24260:intron | 30.0% | |
| GAAAATGAGAAGAGAGAAAT+AGG | + | chr1.1:1903768-1903787 | MS.gene24260:intron | 30.0% | |
| GATTAAGGAATTGTTTGGAT+TGG | - | chr1.1:1902674-1902693 | None:intergenic | 30.0% | |
| GTCTTTCTATGCTTAATACA+AGG | - | chr1.1:1903498-1903517 | None:intergenic | 30.0% | |
| TACAACATTTAGTGATTGCA+GGG | - | chr1.1:1904883-1904902 | None:intergenic | 30.0% | |
| TGAGAAATAGAGTAGATTTG+AGG | + | chr1.1:1903819-1903838 | MS.gene24260:intron | 30.0% | |
| TGTTCATTATTAGGATCAGA+GGG | + | chr1.1:1902821-1902840 | MS.gene24260:CDS | 30.0% | |
| TTAGTACAAGCTAGCTATAT+TGG | + | chr1.1:1902250-1902269 | MS.gene24260:intron | 30.0% | |
| TTGTTCATTATTAGGATCAG+AGG | + | chr1.1:1902820-1902839 | MS.gene24260:CDS | 30.0% | |
| TTTGTTCAGTGAGTTATTCT+AGG | + | chr1.1:1903256-1903275 | MS.gene24260:intron | 30.0% | |
| ! | GCAAAATCTTCCTTGATTTT+GGG | - | chr1.1:1902970-1902989 | None:intergenic | 30.0% |
| ! | GTATAATAGTTATTTCCAGG+TGG | + | chr1.1:1902879-1902898 | MS.gene24260:intron | 30.0% |
| ! | TGCAAAATCTTCCTTGATTT+TGG | - | chr1.1:1902971-1902990 | None:intergenic | 30.0% |
| !! | AAGTTGTTTTCAGCTTAAGT+AGG | - | chr1.1:1902572-1902591 | None:intergenic | 30.0% |
| !! | ACAAGTTTTGTGATGCTATT+TGG | - | chr1.1:1902511-1902530 | None:intergenic | 30.0% |
| !! | AGTAGATTTGAGGTATTGTT+TGG | + | chr1.1:1903829-1903848 | MS.gene24260:intron | 30.0% |
| !! | AGTTGTTTTCAGCTTAAGTA+GGG | - | chr1.1:1902571-1902590 | None:intergenic | 30.0% |
| !! | CAAGTTTTGTGATGCTATTT+GGG | - | chr1.1:1902510-1902529 | None:intergenic | 30.0% |
| !! | TTTAATTTGTGTGCAGCAAA+AGG | + | chr1.1:1902729-1902748 | MS.gene24260:intron | 30.0% |
| !! | TTTTGACTGCAGATCTTTAA+TGG | + | chr1.1:1904667-1904686 | MS.gene24260:intron | 30.0% |
| !!! | ATTGGTCGTTTTTCAATTGA+AGG | - | chr1.1:1903923-1903942 | None:intergenic | 30.0% |
| !!! | TGTGATACACTTGTGTTTTT+TGG | + | chr1.1:1903190-1903209 | MS.gene24260:intron | 30.0% |
| AACACAAGTGTATCACAATG+AGG | - | chr1.1:1903187-1903206 | None:intergenic | 35.0% | |
| ACAATAACAAGAAAACCACC+TGG | - | chr1.1:1902897-1902916 | None:intergenic | 35.0% | |
| AGAAATCATTATGTGGAAGG+TGG | + | chr1.1:1905212-1905231 | MS.gene24260:CDS | 35.0% | |
| AGACAACTCAATCATTGAAC+AGG | + | chr1.1:1904840-1904859 | MS.gene24260:CDS | 35.0% | |
| AGATCAAAACCTCTGCTATA+AGG | - | chr1.1:1904586-1904605 | None:intergenic | 35.0% | |
| AGATCTGCAGTCAAAAGAAA+TGG | - | chr1.1:1904663-1904682 | None:intergenic | 35.0% | |
| AGCAGAAAAGGAATGAAGAA+TGG | + | chr1.1:1901987-1902006 | MS.gene24260:CDS | 35.0% | |
| AGCATAGAAAGACTATTCCA+AGG | + | chr1.1:1903505-1903524 | MS.gene24260:intron | 35.0% | |
| ATATTCCTTGGCGTATTGTT+TGG | - | chr1.1:1902089-1902108 | None:intergenic | 35.0% | |
| ATCAAAACCTCTGCTATAAG+GGG | - | chr1.1:1904584-1904603 | None:intergenic | 35.0% | |
| ATTCACGAGATACTAACAGT+TGG | + | chr1.1:1905113-1905132 | MS.gene24260:CDS | 35.0% | |
| CTACAACATTTAGTGATTGC+AGG | - | chr1.1:1904884-1904903 | None:intergenic | 35.0% | |
| CTATGCTTAATACAATCCCT+TGG | - | chr1.1:1903525-1903544 | None:intergenic | 35.0% | |
| CTGAAACAAGGAAACTCATT+TGG | + | chr1.1:1902056-1902075 | MS.gene24260:CDS | 35.0% | |
| CTGAACAAACCTTTAATCAG+AGG | - | chr1.1:1903245-1903264 | None:intergenic | 35.0% | |
| GATCAAAACCTCTGCTATAA+GGG | - | chr1.1:1904585-1904604 | None:intergenic | 35.0% | |
| GCAGAAAAGGAATGAAGAAT+GGG | + | chr1.1:1901988-1902007 | MS.gene24260:CDS | 35.0% | |
| GCATAGAAAGACTATTCCAA+GGG | + | chr1.1:1903506-1903525 | MS.gene24260:intron | 35.0% | |
| GCTTATTTGAGCTTATCTAC+AGG | - | chr1.1:1902652-1902671 | None:intergenic | 35.0% | |
| GGCTACATTGTAATATTGCA+TGG | - | chr1.1:1904632-1904651 | None:intergenic | 35.0% | |
| GTCAGTAGATAAGCTCAATT+AGG | + | chr1.1:1902531-1902550 | MS.gene24260:intron | 35.0% | |
| TAAAACTCTTAGGGTGTGTT+TGG | + | chr1.1:1903736-1903755 | MS.gene24260:intron | 35.0% | |
| TACCTGATCATCATATTCCT+TGG | - | chr1.1:1902101-1902120 | None:intergenic | 35.0% | |
| TAGGAACCAAACAACAAAGT+CGG | - | chr1.1:1904951-1904970 | None:intergenic | 35.0% | |
| TCAATTAGGCCAATCAAATC+AGG | + | chr1.1:1902545-1902564 | MS.gene24260:intron | 35.0% | |
| TCAGGTGTAACTATATCTCA+AGG | - | chr1.1:1903382-1903401 | None:intergenic | 35.0% | |
| TCATAGGTACACTTAACAGT+GGG | - | chr1.1:1903343-1903362 | None:intergenic | 35.0% | |
| TTCGACTGACATTATCCAAT+GGG | + | chr1.1:1905048-1905067 | MS.gene24260:intron | 35.0% | |
| TTGAACAGGTTTGTCTGATT+TGG | + | chr1.1:1904854-1904873 | MS.gene24260:intron | 35.0% | |
| TTTCTTCTTCATACCACCTA+GGG | - | chr1.1:1905192-1905211 | None:intergenic | 35.0% | |
| ! | AAATCACATCAAAGTGCTTC+AGG | - | chr1.1:1903400-1903419 | None:intergenic | 35.0% |
| ! | ACTTTGTAAATGGCGTTTTG+TGG | + | chr1.1:1902276-1902295 | MS.gene24260:intron | 35.0% |
| ! | CTCTCTACTTGTTACTAGTT+AGG | + | chr1.1:1903680-1903699 | MS.gene24260:intron | 35.0% |
| ! | GTTGAGCCTTATGTTACATA+CGG | + | chr1.1:1904736-1904755 | MS.gene24260:CDS | 35.0% |
| ! | TTGAGCCTTATGTTACATAC+GGG | + | chr1.1:1904737-1904756 | MS.gene24260:CDS | 35.0% |
| ! | TTTGGTTCAGCAGAGAATTA+GGG | - | chr1.1:1904462-1904481 | None:intergenic | 35.0% |
| ! | TTTTCTTCTTCATACCACCT+AGG | - | chr1.1:1905193-1905212 | None:intergenic | 35.0% |
| AACAGTCCAGATTCTGTGTA+TGG | + | chr1.1:1904985-1905004 | MS.gene24260:intron | 40.0% | |
| AAGCGTGAAGCTAAACTCAA+GGG | + | chr1.1:1902766-1902785 | MS.gene24260:CDS | 40.0% | |
| AAGGAATGAAGAATGGGCAT+TGG | + | chr1.1:1901994-1902013 | MS.gene24260:CDS | 40.0% | |
| AATGGAGATCCATTCCATCT+AGG | - | chr1.1:1904928-1904947 | None:intergenic | 40.0% | |
| ACAACACCATACACAGAATC+TGG | - | chr1.1:1904994-1905013 | None:intergenic | 40.0% | |
| ACATCAACGAACTCATCAGA+AGG | + | chr1.1:1905258-1905277 | MS.gene24260:CDS | 40.0% | |
| ACCAAACAACAAAGTCGGAA+TGG | - | chr1.1:1904946-1904965 | None:intergenic | 40.0% | |
| AGAAGAAGAGAGCTGAAACA+AGG | + | chr1.1:1902044-1902063 | MS.gene24260:CDS | 40.0% | |
| AGGGAATTGATCTACAAGAG+GGG | + | chr1.1:1904781-1904800 | MS.gene24260:CDS | 40.0% | |
| ATGAACAAGAGCTTAGCTTC+AGG | - | chr1.1:1902808-1902827 | None:intergenic | 40.0% | |
| ATGGACTCTAACACTGTGTT+TGG | - | chr1.1:1904551-1904570 | None:intergenic | 40.0% | |
| CACATCAAGATAAGCACTTG+TGG | - | chr1.1:1902334-1902353 | None:intergenic | 40.0% | |
| CAGGGAATTGATCTACAAGA+GGG | + | chr1.1:1904780-1904799 | MS.gene24260:CDS | 40.0% | |
| CTTCGACTGACATTATCCAA+TGG | + | chr1.1:1905047-1905066 | MS.gene24260:intron | 40.0% | |
| GTCATAGGTACACTTAACAG+TGG | - | chr1.1:1903344-1903363 | None:intergenic | 40.0% | |
| GTCGAAAGAGGAAGTGAAAA+CGG | + | chr1.1:1901940-1901959 | MS.gene24260:CDS | 40.0% | |
| TAGAAAGACTATTCCAAGGG+AGG | + | chr1.1:1903509-1903528 | MS.gene24260:intron | 40.0% | |
| TATAAGGGGTCTATCAAGGA+TGG | - | chr1.1:1904570-1904589 | None:intergenic | 40.0% | |
| TCAGGGAATTGATCTACAAG+AGG | + | chr1.1:1904779-1904798 | MS.gene24260:CDS | 40.0% | |
| TCTAACACTGTGTTTGGTAG+AGG | - | chr1.1:1904545-1904564 | None:intergenic | 40.0% | |
| TCTTTACTGTCAGACCTAGA+TGG | + | chr1.1:1904911-1904930 | MS.gene24260:intron | 40.0% | |
| TGAACAAGAGCTTAGCTTCA+GGG | - | chr1.1:1902807-1902826 | None:intergenic | 40.0% | |
| TGCAATGCACCTCTGATTAA+AGG | + | chr1.1:1903233-1903252 | MS.gene24260:intron | 40.0% | |
| TTCGCAAATCTGGAGAGAAA+GGG | - | chr1.1:1904397-1904416 | None:intergenic | 40.0% | |
| TTCTTCTTCATACCACCTAG+GGG | - | chr1.1:1905191-1905210 | None:intergenic | 40.0% | |
| ! | CCTTTTCTGCTTCTTCAGAA+CGG | - | chr1.1:1901978-1901997 | None:intergenic | 40.0% |
| ! | GTTTGGTTCAGCAGAGAATT+AGG | - | chr1.1:1904463-1904482 | None:intergenic | 40.0% |
| ! | TAAGTAGGGCCTGATTTGAT+TGG | - | chr1.1:1902557-1902576 | None:intergenic | 40.0% |
| !! | CTGTTCTAGCTTGAGCAAAT+AGG | - | chr1.1:1904970-1904989 | None:intergenic | 40.0% |
| !! | TCCATTCCGACTTTGTTGTT+TGG | + | chr1.1:1904942-1904961 | MS.gene24260:intron | 40.0% |
| !!! | TTTTGGAGTCTTCGCAAATC+TGG | - | chr1.1:1904407-1904426 | None:intergenic | 40.0% |
| ACGCTATGGACCCAAAATCA+AGG | + | chr1.1:1902957-1902976 | MS.gene24260:CDS | 45.0% | |
| ACTAGCAAAACAACCTCCCT+TGG | - | chr1.1:1903558-1903577 | None:intergenic | 45.0% | |
| ACTGACATTATCCAATGGGC+AGG | + | chr1.1:1905052-1905071 | MS.gene24260:intron | 45.0% | |
| ACTGTCAGACCTAGATGGAA+TGG | + | chr1.1:1904916-1904935 | MS.gene24260:intron | 45.0% | |
| ATTGGTGAAGAAGCAGGAAC+AGG | + | chr1.1:1902012-1902031 | MS.gene24260:CDS | 45.0% | |
| CGAAGACTCCAAAAAGCAGT+AGG | + | chr1.1:1904413-1904432 | MS.gene24260:intron | 45.0% | |
| CGCCAAGGAATATGATGATC+AGG | + | chr1.1:1902096-1902115 | MS.gene24260:CDS | 45.0% | |
| CTGCTATAAGGGGTCTATCA+AGG | - | chr1.1:1904574-1904593 | None:intergenic | 45.0% | |
| CTTACGGCAATCATGTGTGT+TGG | + | chr1.1:1904265-1904284 | MS.gene24260:intron | 45.0% | |
| CTTCGCAAATCTGGAGAGAA+AGG | - | chr1.1:1904398-1904417 | None:intergenic | 45.0% | |
| GAAAAGAGACAGACAGACGT+GGG | - | chr1.1:1904440-1904459 | None:intergenic | 45.0% | |
| GAAAGAGGAAGTGAAAACGG+TGG | + | chr1.1:1901943-1901962 | MS.gene24260:CDS | 45.0% | |
| GAAGCGTGAAGCTAAACTCA+AGG | + | chr1.1:1902765-1902784 | MS.gene24260:CDS | 45.0% | |
| GGGTACCCGTATGTAACATA+AGG | - | chr1.1:1904745-1904764 | None:intergenic | 45.0% | |
| TAACATAAGGCTCAACCCTG+TGG | - | chr1.1:1904732-1904751 | None:intergenic | 45.0% | |
| TAGAGCCAAACAATACGCCA+AGG | + | chr1.1:1902081-1902100 | MS.gene24260:CDS | 45.0% | |
| TATCCAATGGGCAGGTTCTT+GGG | + | chr1.1:1905060-1905079 | MS.gene24260:intron | 45.0% | |
| TCGCAAATCTGGAGAGAAAG+GGG | - | chr1.1:1904396-1904415 | None:intergenic | 45.0% | |
| TGATAGACCCCTTATAGCAG+AGG | + | chr1.1:1904574-1904593 | MS.gene24260:intron | 45.0% | |
| TTATCCAATGGGCAGGTTCT+TGG | + | chr1.1:1905059-1905078 | MS.gene24260:intron | 45.0% | |
| TTGATCTACAAGAGGGGCTA+CGG | + | chr1.1:1904787-1904806 | MS.gene24260:CDS | 45.0% | |
| ! | TGCAGCAAAAGGAGTTGATC+AGG | + | chr1.1:1902740-1902759 | MS.gene24260:intron | 45.0% |
| ! | TGCTTCTTCAGAACGGATTC+AGG | - | chr1.1:1901971-1901990 | None:intergenic | 45.0% |
| !! | CCGTTCTGAAGAAGCAGAAA+AGG | + | chr1.1:1901975-1901994 | MS.gene24260:CDS | 45.0% |
| !! | TTGTTTGCCTCTCTGAAGTG+AGG | - | chr1.1:1905140-1905159 | None:intergenic | 45.0% |
| !! | AATAATTGTATAAATTAAAA+AGG | - | chr1.1:1902703-1902722 | None:intergenic | 5.0% |
| !!! | ATTTTTTTTATCAATAAAAA+TGG | + | chr1.1:1904197-1904216 | MS.gene24260:intron | 5.0% |
| AACCCTGTGGAGCATGTTCA+CGG | - | chr1.1:1904719-1904738 | None:intergenic | 50.0% | |
| AGTTGGTCCTCACTTCAGAG+AGG | + | chr1.1:1905130-1905149 | MS.gene24260:CDS | 50.0% | |
| CCCTGACGCTCTTCAGATTA+GGG | - | chr1.1:1904765-1904784 | None:intergenic | 50.0% | |
| CGCAAATCTGGAGAGAAAGG+GGG | - | chr1.1:1904395-1904414 | None:intergenic | 50.0% | |
| CGTGAAGCTAAACTCAAGGG+TGG | + | chr1.1:1902769-1902788 | MS.gene24260:CDS | 50.0% | |
| CTTTGAGCTTGAAAGGCCAC+AGG | - | chr1.1:1905166-1905185 | None:intergenic | 50.0% | |
| GAGAGGCAAACAACTTCCTG+TGG | + | chr1.1:1905147-1905166 | MS.gene24260:CDS | 50.0% | |
| GGAAAAGAGACAGACAGACG+TGG | - | chr1.1:1904441-1904460 | None:intergenic | 50.0% | |
| TACCGTGAACATGCTCCACA+GGG | + | chr1.1:1904714-1904733 | MS.gene24260:CDS | 50.0% | |
| TCCCTGACGCTCTTCAGATT+AGG | - | chr1.1:1904766-1904785 | None:intergenic | 50.0% | |
| TTCAAGCTCAAAGCTCCCCT+AGG | + | chr1.1:1905173-1905192 | MS.gene24260:CDS | 50.0% | |
| ! | AAGGTGGTGATGCTGGAAAC+AGG | + | chr1.1:1905228-1905247 | MS.gene24260:CDS | 50.0% |
| ! | AGGTGGTGATGCTGGAAACA+GGG | + | chr1.1:1905229-1905248 | MS.gene24260:CDS | 50.0% |
| ! | TATGTGGAAGGTGGTGATGC+TGG | + | chr1.1:1905221-1905240 | MS.gene24260:CDS | 50.0% |
| !! | ACCCTAATCTGAAGAGCGTC+AGG | + | chr1.1:1904761-1904780 | MS.gene24260:CDS | 50.0% |
| !! | ACGTGGGACCTACTGCTTTT+TGG | - | chr1.1:1904424-1904443 | None:intergenic | 50.0% |
| !! | AGGGGAGCTTTGAGCTTGAA+AGG | - | chr1.1:1905173-1905192 | None:intergenic | 50.0% |
| !! | ATGGGCATTGGTGAAGAAGC+AGG | + | chr1.1:1902006-1902025 | MS.gene24260:CDS | 50.0% |
| !! | CCCTAATCTGAAGAGCGTCA+GGG | + | chr1.1:1904762-1904781 | MS.gene24260:CDS | 50.0% |
| !! | GCAGCTTTTGCGTTTGAGAC+AGG | + | chr1.1:1902988-1903007 | MS.gene24260:CDS | 50.0% |
| AAGCTCAAAGCTCCCCTAGG+TGG | + | chr1.1:1905176-1905195 | MS.gene24260:CDS | 55.0% | |
| CTACCGTGAACATGCTCCAC+AGG | + | chr1.1:1904713-1904732 | MS.gene24260:CDS | 55.0% | |
| CTTCCCAAGAACCTGCCCAT+TGG | - | chr1.1:1905066-1905085 | None:intergenic | 55.0% | |
| GGGCAGGTTCTTGGGAAGCA+CGG | + | chr1.1:1905068-1905087 | MS.gene24260:intron | 60.0% | |
| GGGGCTACGGCAAAGTTGAC+AGG | + | chr1.1:1904800-1904819 | MS.gene24260:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 1901938 | 1905289 | 1901938 | ID=MS.gene24260 |
| chr1.1 | mRNA | 1901938 | 1905289 | 1901938 | ID=MS.gene24260.t1;Parent=MS.gene24260 |
| chr1.1 | exon | 1901938 | 1902117 | 1901938 | ID=MS.gene24260.t1.exon1;Parent=MS.gene24260.t1 |
| chr1.1 | CDS | 1901938 | 1902117 | 1901938 | ID=cds.MS.gene24260.t1;Parent=MS.gene24260.t1 |
| chr1.1 | exon | 1902745 | 1902842 | 1902745 | ID=MS.gene24260.t1.exon2;Parent=MS.gene24260.t1 |
| chr1.1 | CDS | 1902745 | 1902842 | 1902745 | ID=cds.MS.gene24260.t1;Parent=MS.gene24260.t1 |
| chr1.1 | exon | 1902952 | 1903009 | 1902952 | ID=MS.gene24260.t1.exon3;Parent=MS.gene24260.t1 |
| chr1.1 | CDS | 1902952 | 1903009 | 1902952 | ID=cds.MS.gene24260.t1;Parent=MS.gene24260.t1 |
| chr1.1 | exon | 1904679 | 1904861 | 1904679 | ID=MS.gene24260.t1.exon4;Parent=MS.gene24260.t1 |
| chr1.1 | CDS | 1904679 | 1904861 | 1904679 | ID=cds.MS.gene24260.t1;Parent=MS.gene24260.t1 |
| chr1.1 | exon | 1905074 | 1905289 | 1905074 | ID=MS.gene24260.t1.exon5;Parent=MS.gene24260.t1 |
| chr1.1 | CDS | 1905074 | 1905289 | 1905074 | ID=cds.MS.gene24260.t1;Parent=MS.gene24260.t1 |
| Gene Sequence |
| Protein sequence |
