AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene037074

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037074.t1 MTR_2g038250 98.361 244 4 0 1 244 1 244 3.80e-178 489
MS.gene037074.t1 MTR_1g022385 97.951 244 5 0 1 244 32 275 1.50e-177 489
MS.gene037074.t1 MTR_4g008160 86.722 241 32 0 4 244 3 243 8.50e-159 440
MS.gene037074.t1 MTR_7g059170 45.749 247 130 2 1 244 1 246 2.47e-73 223
MS.gene037074.t1 MTR_1g022375 66.667 102 34 0 133 234 55 156 6.95e-43 143
MS.gene037074.t1 MTR_1g108785 40.179 112 13 3 126 236 1 59 1.76e-15 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037074.t1 AT3G13580 82.377 244 43 0 1 244 1 244 2.51e-153 426
MS.gene037074.t1 AT3G13580 82.377 244 43 0 1 244 1 244 2.51e-153 426
MS.gene037074.t1 AT3G13580 82.377 244 43 0 1 244 1 244 2.51e-153 426
MS.gene037074.t1 AT3G13580 82.377 244 43 0 1 244 1 244 2.51e-153 426
MS.gene037074.t1 AT3G13580 82.377 244 43 0 1 244 1 244 2.51e-153 426
MS.gene037074.t1 AT3G13580 82.377 244 43 0 1 244 1 244 2.51e-153 426
MS.gene037074.t1 AT3G13580 82.377 244 43 0 1 244 1 244 2.51e-153 426
MS.gene037074.t1 AT3G13580 82.377 244 43 0 1 244 1 244 2.51e-153 426
MS.gene037074.t1 AT3G13580 82.377 244 43 0 1 244 1 244 2.51e-153 426
MS.gene037074.t1 AT2G01250 84.583 240 37 0 5 244 3 242 6.61e-152 422
MS.gene037074.t1 AT2G44120 83.333 240 40 0 5 244 8 247 2.37e-150 419
MS.gene037074.t1 AT2G44120 83.333 240 40 0 5 244 3 242 2.75e-150 418
MS.gene037074.t1 AT2G01250 80.000 175 35 0 5 179 3 177 5.20e-97 281
MS.gene037074.t1 AT1G80750 43.320 247 137 2 1 244 1 247 1.88e-63 198

Find 62 sgRNAs with CRISPR-Local

Find 139 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAAAATCTTCCTTGATTT+TGG 0.006132 2.1:-52235920 None:intergenic
TTCTCTGACACTCTTCAAAT+TGG 0.182246 2.1:-52237012 None:intergenic
TGCTTCTTCAAAACAGATTC+AGG 0.223629 2.1:-52235325 None:intergenic
AATATTCAATTGCAGGTTCT+TGG 0.263781 2.1:+52237387 MS.gene037074:intron
ACTCATTAGAAGGATGAATT+AGG 0.270598 2.1:+52237596 MS.gene037074:CDS
CTGAAACCAGGAAGCTTATC+TGG 0.274950 2.1:+52235413 MS.gene037074:CDS
TTTCAAGCTCAAAGCTCCTT+TGG 0.284641 2.1:+52237500 MS.gene037074:CDS
TTCAAGCTCAAAGCTCCTTT+GGG 0.329811 2.1:+52237501 MS.gene037074:CDS
TTGATCTACAAGCGTGGTTA+TGG 0.334090 2.1:+52237035 MS.gene037074:CDS
TTCAGCAAAAGGAGTTGATT+AGG 0.371855 2.1:+52235565 MS.gene037074:intron
TCTACTCCAGATAAGCTTCC+TGG 0.375959 2.1:-52235419 None:intergenic
CGGTTGCTTTGTTCACTTTG+AGG 0.382967 2.1:-52236854 None:intergenic
AAGGTGGTGATGCTGGTAAC+AGG 0.401808 2.1:+52237556 MS.gene037074:CDS
ATATTCAATTGCAGGTTCTT+GGG 0.423006 2.1:+52237388 MS.gene037074:intron
GTACTCCTTAGCGTACTGTT+TGG 0.434466 2.1:-52235443 None:intergenic
ATGGGCATTGGTGAAGAAAC+AGG 0.439903 2.1:+52235363 MS.gene037074:CDS
ACATCAATGAACTCATTAGA+AGG 0.442744 2.1:+52237586 MS.gene037074:CDS
GCAGCTTCTGCGATTGAGAC+AGG 0.461345 2.1:+52235940 MS.gene037074:CDS
GTTGAGCCATATGTCACCTA+TGG 0.461514 2.1:+52236894 MS.gene037074:CDS
TCTCTGACACTCTTCAAATT+GGG 0.464078 2.1:-52237011 None:intergenic
GAAGCGTGAAGCTAAGCTTA+AGG 0.464202 2.1:+52235590 MS.gene037074:CDS
AAGCGTGAAGCTAAGCTTAA+GGG 0.467088 2.1:+52235591 MS.gene037074:CDS
ATGAACAAAAGCTTAGCTTC+AGG 0.472114 2.1:-52235630 None:intergenic
AGCAGAAAAGGAACGAGGAA+TGG 0.472482 2.1:+52235344 MS.gene037074:CDS
GCATACCCATAGGTGACATA+TGG 0.482193 2.1:-52236900 None:intergenic
AGATAACTCTATCATCGAAC+AGG 0.483740 2.1:+52237088 MS.gene037074:CDS
AAGAGAAATCACTATGTTGA+AGG 0.489111 2.1:+52237537 MS.gene037074:CDS
AGAAGAAGAGAGCTGAAACC+AGG 0.494410 2.1:+52235401 MS.gene037074:CDS
CAACCGTGAATATGCTCCAC+AGG 0.496550 2.1:+52236871 MS.gene037074:CDS
TAATTTCAGTATCAATGCAA+TGG 0.497010 2.1:+52235895 MS.gene037074:intron
AAAGGAGCTTTGAGCTTGAA+AGG 0.504831 2.1:-52237498 None:intergenic
GAGAGGCAAACAACTTCCTA+TGG 0.504947 2.1:+52237475 MS.gene037074:CDS
AACCCTGTGGAGCATATTCA+CGG 0.507599 2.1:-52236874 None:intergenic
ATGCAATGGACCCAAAATCA+AGG 0.518414 2.1:+52235909 MS.gene037074:CDS
GCAGAAAAGGAACGAGGAAT+GGG 0.522675 2.1:+52235345 MS.gene037074:CDS
TGAAGTGAGGTCCAACAGTA+AGG 0.528046 2.1:-52237452 None:intergenic
TATGTTGAAGGTGGTGATGC+TGG 0.533299 2.1:+52237549 MS.gene037074:CDS
ATTCATGAGATCCTTACTGT+TGG 0.542331 2.1:+52237441 MS.gene037074:CDS
GTGGTTATGGAAAGGTTGAT+AGG 0.547437 2.1:+52237048 MS.gene037074:CDS
TTGCAGGTTCTTGGGAAACA+TGG 0.547799 2.1:+52237396 MS.gene037074:intron
TTCTTCTTCATGCCACCCAA+AGG 0.554983 2.1:-52237516 None:intergenic
CGCTAAGGAGTACGATGACT+CGG 0.560110 2.1:+52235453 MS.gene037074:CDS
CTTTGAGCTTGAAAGGCCAT+AGG 0.568033 2.1:-52237491 None:intergenic
TTGTTCATTATCAGGATCAG+AGG 0.568101 2.1:+52235645 MS.gene037074:CDS
AAGCTCAAAGCTCCTTTGGG+TGG 0.570830 2.1:+52237504 MS.gene037074:CDS
TTGTTTGCCTCTCTGAAGTG+AGG 0.573961 2.1:-52237465 None:intergenic
TAGAGCCAAACAGTACGCTA+AGG 0.574389 2.1:+52235438 MS.gene037074:CDS
AAGGAACGAGGAATGGGCAT+TGG 0.574615 2.1:+52235351 MS.gene037074:CDS
CAAAACAGATTCAGGAACAA+CGG 0.575093 2.1:-52235317 None:intergenic
TGTTCATTATCAGGATCAGA+GGG 0.584717 2.1:+52235646 MS.gene037074:CDS
TTGAGCCATATGTCACCTAT+GGG 0.595042 2.1:+52236895 MS.gene037074:CDS
ATTCACTGAAATGGCCAAAG+AGG 0.608425 2.1:+52235285 None:intergenic
CTACAAGCGTGGTTATGGAA+AGG 0.617075 2.1:+52237040 MS.gene037074:CDS
CGTGAAGCTAAGCTTAAGGG+TGG 0.634387 2.1:+52235594 MS.gene037074:CDS
AGAAATCACTATGTTGAAGG+TGG 0.637998 2.1:+52237540 MS.gene037074:CDS
AGGTGGTGATGCTGGTAACA+GGG 0.651466 2.1:+52237557 MS.gene037074:CDS
TGACATATGGCTCAACCCTG+TGG 0.662121 2.1:-52236887 None:intergenic
AACCGTGAATATGCTCCACA+GGG 0.683451 2.1:+52236872 MS.gene037074:CDS
GAAGAAGCAGAAAAGGAACG+AGG 0.689511 2.1:+52235339 MS.gene037074:CDS
AGAGAATTGATCTACAAGCG+TGG 0.711706 2.1:+52237029 MS.gene037074:CDS
TGTTGGACCTCACTTCAGAG+AGG 0.727556 2.1:+52237458 MS.gene037074:CDS
TGGTGATGCTGGTAACAGGG+AGG 0.759776 2.1:+52237560 MS.gene037074:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTAAAGAGAAATACT+AGG - chr2.1:52236717-52236736 None:intergenic 15.0%
!! ATTCTGATTATAACTTTAAA+CGG - chr2.1:52236069-52236088 None:intergenic 15.0%
!!! AAAGGAAAAAAAAGTTTTTT+TGG - chr2.1:52236391-52236410 None:intergenic 15.0%
!!! TAGTATTTCTCTTTAATTTT+TGG + chr2.1:52236716-52236735 MS.gene037074:intron 15.0%
!!! TATATAATTTTGTTCTGTTT+TGG + chr2.1:52235756-52235775 MS.gene037074:intron 15.0%
!!! TTTTTTTTAGTTTAGAGATA+AGG + chr2.1:52236670-52236689 MS.gene037074:intron 15.0%
!! ATCTTCAATAGTTAAGTAAA+AGG - chr2.1:52236570-52236589 None:intergenic 20.0%
!! GCAAAATAGAAAAAAATAAC+TGG - chr2.1:52237358-52237377 None:intergenic 20.0%
!! TGTATTAATAATTCAGATAG+AGG - chr2.1:52236340-52236359 None:intergenic 20.0%
!!! AGATTCTAACTTTGAAAATT+TGG - chr2.1:52237223-52237242 None:intergenic 20.0%
!!! GATTCTAACTTTGAAAATTT+GGG - chr2.1:52237222-52237241 None:intergenic 20.0%
!!! TTTCCTTTTTTGTATTGTTT+AGG + chr2.1:52236403-52236422 MS.gene037074:intron 20.0%
! AACTCATTATAACTCTGTAT+GGG + chr2.1:52236954-52236973 MS.gene037074:intron 25.0%
! AAGGGATCAATAGTTATTAT+AGG + chr2.1:52236195-52236214 MS.gene037074:intron 25.0%
! ACATGAAAATAACCAATTGT+TGG - chr2.1:52236282-52236301 None:intergenic 25.0%
! ATAATTGAGCTTTCATCTTA+TGG + chr2.1:52236246-52236265 MS.gene037074:intron 25.0%
! TAAAATACAAAGTCAGAATG+AGG - chr2.1:52237199-52237218 None:intergenic 25.0%
! TAACTCATTATAACTCTGTA+TGG + chr2.1:52236953-52236972 MS.gene037074:intron 25.0%
! TAAGTAAAAGGTTATCATAC+AGG - chr2.1:52236558-52236577 None:intergenic 25.0%
! TAATTTCAGTATCAATGCAA+TGG + chr2.1:52235895-52235914 MS.gene037074:intron 25.0%
!! GCTTATTCTTCTATTTGTTT+TGG + chr2.1:52236808-52236827 MS.gene037074:intron 25.0%
AAAATTGACAATGACAAGGA+TGG - chr2.1:52236634-52236653 None:intergenic 30.0%
AAGAGAAATCACTATGTTGA+AGG + chr2.1:52237537-52237556 MS.gene037074:CDS 30.0%
AATATTCAATTGCAGGTTCT+TGG + chr2.1:52237387-52237406 MS.gene037074:intron 30.0%
AATTTGTGTGTTTCAGCAAA+AGG + chr2.1:52235554-52235573 MS.gene037074:intron 30.0%
ACATCAATGAACTCATTAGA+AGG + chr2.1:52237586-52237605 MS.gene037074:CDS 30.0%
ACTAAACCAGTTGGTTATAA+TGG - chr2.1:52236608-52236627 None:intergenic 30.0%
ACTATTGATCCCTTAATTGA+AGG - chr2.1:52236189-52236208 None:intergenic 30.0%
ATATTCAATTGCAGGTTCTT+GGG + chr2.1:52237388-52237407 MS.gene037074:intron 30.0%
CAGCCTAAACAATACAAAAA+AGG - chr2.1:52236409-52236428 None:intergenic 30.0%
CTAAACCAGTTGGTTATAAT+GGG - chr2.1:52236607-52236626 None:intergenic 30.0%
CTAATTATTTGATACTGAGC+AGG + chr2.1:52236527-52236546 MS.gene037074:intron 30.0%
CTGACATAATATTCAATTGC+AGG + chr2.1:52237380-52237399 MS.gene037074:intron 30.0%
GAATAAAATGTATCCTGTGT+GGG + chr2.1:52235822-52235841 MS.gene037074:intron 30.0%
GCTGTTCATCTATATAAGAA+TGG + chr2.1:52236425-52236444 MS.gene037074:intron 30.0%
TCAGAAAATTGACAATGACA+AGG - chr2.1:52236638-52236657 None:intergenic 30.0%
TGAATAAAATGTATCCTGTG+TGG + chr2.1:52235821-52235840 MS.gene037074:intron 30.0%
! CTAAGCTTTTGTTCATTATC+AGG + chr2.1:52235637-52235656 MS.gene037074:CDS 30.0%
! GCAAAATCTTCCTTGATTTT+GGG - chr2.1:52235922-52235941 None:intergenic 30.0%
! TAATTTTGCGGTGATTATGT+TGG - chr2.1:52236315-52236334 None:intergenic 30.0%
! TGCAAAATCTTCCTTGATTT+TGG - chr2.1:52235923-52235942 None:intergenic 30.0%
! TTCAAAGTGCCTTCAATTAA+GGG + chr2.1:52236177-52236196 MS.gene037074:intron 30.0%
! TTTAGTTTAGAGATAAGGTG+TGG + chr2.1:52236675-52236694 MS.gene037074:intron 30.0%
! TTTCAAAGTGCCTTCAATTA+AGG + chr2.1:52236176-52236195 MS.gene037074:intron 30.0%
!! GGTGCTATTATTATTGTTGA+AGG + chr2.1:52237324-52237343 MS.gene037074:intron 30.0%
!!! CAATTGGTTTTGTTCTTGAT+GGG + chr2.1:52235988-52236007 MS.gene037074:intron 30.0%
!!! CTGTTTTGGAAAAATGATAG+AGG + chr2.1:52235770-52235789 MS.gene037074:intron 30.0%
!!! TCTCTTTAATTTTTGGCTTC+TGG + chr2.1:52236723-52236742 MS.gene037074:intron 30.0%
AATAATAGCACCACCATACA+CGG - chr2.1:52237316-52237335 None:intergenic 35.0%
ACAGGTAAATCAGATTGGAT+TGG + chr2.1:52235958-52235977 MS.gene037074:intron 35.0%
AGAAATCACTATGTTGAAGG+TGG + chr2.1:52237540-52237559 MS.gene037074:CDS 35.0%
AGATAACTCTATCATCGAAC+AGG + chr2.1:52237088-52237107 MS.gene037074:CDS 35.0%
ATACTCGTATCTTCTAGACT+CGG + chr2.1:52236767-52236786 MS.gene037074:intron 35.0%
ATGAACAAAAGCTTAGCTTC+AGG - chr2.1:52235633-52235652 None:intergenic 35.0%
ATTCACCCATTATAACCAAC+TGG + chr2.1:52236599-52236618 MS.gene037074:intron 35.0%
ATTCATGAGATCCTTACTGT+TGG + chr2.1:52237441-52237460 MS.gene037074:CDS 35.0%
CAAAACAGATTCAGGAACAA+CGG - chr2.1:52235320-52235339 None:intergenic 35.0%
CAAATAAGAATAACCCACAC+AGG - chr2.1:52235838-52235857 None:intergenic 35.0%
GATTGCACTTTGCAATTGTT+GGG + chr2.1:52236139-52236158 MS.gene037074:intron 35.0%
TCTCTGACACTCTTCAAATT+GGG - chr2.1:52237014-52237033 None:intergenic 35.0%
TGATTGCACTTTGCAATTGT+TGG + chr2.1:52236138-52236157 MS.gene037074:intron 35.0%
TGCTTCTTCAAAACAGATTC+AGG - chr2.1:52235328-52235347 None:intergenic 35.0%
TGTGTAATCGAATGAAAGCA+GGG - chr2.1:52237137-52237156 None:intergenic 35.0%
TGTTCATTATCAGGATCAGA+GGG + chr2.1:52235646-52235665 MS.gene037074:CDS 35.0%
TTCTCTGACACTCTTCAAAT+TGG - chr2.1:52237015-52237034 None:intergenic 35.0%
TTGAGACAGGTAAATCAGAT+TGG + chr2.1:52235953-52235972 MS.gene037074:intron 35.0%
TTGTTCATTATCAGGATCAG+AGG + chr2.1:52235645-52235664 MS.gene037074:CDS 35.0%
! CAGATAGAGGAGTAATTTTG+CGG - chr2.1:52236327-52236346 None:intergenic 35.0%
! TTAGTTGATGTATTTGTCGC+TGG + chr2.1:52236032-52236051 MS.gene037074:intron 35.0%
! TTCAGCAAAAGGAGTTGATT+AGG + chr2.1:52235565-52235584 MS.gene037074:intron 35.0%
!! TTGGATTGGTTTGTTGCAAT+TGG + chr2.1:52235972-52235991 MS.gene037074:intron 35.0%
!! TTTTGTTCTTGATGGGTGTT+TGG + chr2.1:52235995-52236014 MS.gene037074:intron 35.0%
!!! CTGTTTTGAAGAAGCAGAAA+AGG + chr2.1:52235332-52235351 MS.gene037074:CDS 35.0%
!!! GCAATTGGTTTTGTTCTTGA+TGG + chr2.1:52235987-52236006 MS.gene037074:intron 35.0%
AAGCGTGAAGCTAAGCTTAA+GGG + chr2.1:52235591-52235610 MS.gene037074:CDS 40.0%
AATGAGGAGAGATCCTATCT+AGG - chr2.1:52237183-52237202 None:intergenic 40.0%
AGAGAATTGATCTACAAGCG+TGG + chr2.1:52237029-52237048 MS.gene037074:CDS 40.0%
ATAATAGCACCACCATACAC+GGG - chr2.1:52237315-52237334 None:intergenic 40.0%
ATGCAATGGACCCAAAATCA+AGG + chr2.1:52235909-52235928 MS.gene037074:CDS 40.0%
CTGTGTAATCGAATGAAAGC+AGG - chr2.1:52237138-52237157 None:intergenic 40.0%
TCGGTGCAATTTATCAGTGT+AGG + chr2.1:52236786-52236805 MS.gene037074:intron 40.0%
TTAGACAAAGTCACGCAATC+TGG - chr2.1:52237272-52237291 None:intergenic 40.0%
TTCAAGCTCAAAGCTCCTTT+GGG + chr2.1:52237501-52237520 MS.gene037074:CDS 40.0%
TTGAGATTCTGCATACCCAT+AGG - chr2.1:52236913-52236932 None:intergenic 40.0%
TTGAGCCATATGTCACCTAT+GGG + chr2.1:52236895-52236914 MS.gene037074:CDS 40.0%
TTGATCTACAAGCGTGGTTA+TGG + chr2.1:52237035-52237054 MS.gene037074:CDS 40.0%
TTTCAAGCTCAAAGCTCCTT+TGG + chr2.1:52237500-52237519 MS.gene037074:CDS 40.0%
! AACGGTTTTCACTTCCTCTT+TGG - chr2.1:52235302-52235321 None:intergenic 40.0%
! GTGGTTATGGAAAGGTTGAT+AGG + chr2.1:52237048-52237067 MS.gene037074:CDS 40.0%
!! AAAGGAGCTTTGAGCTTGAA+AGG - chr2.1:52237501-52237520 None:intergenic 40.0%
!! TTTTGGCTGCAGATCTTCAA+TGG + chr2.1:52236825-52236844 MS.gene037074:intron 40.0%
AACCCTGTGGAGCATATTCA+CGG - chr2.1:52236877-52236896 None:intergenic 45.0%
AACCGTGAATATGCTCCACA+GGG + chr2.1:52236872-52236891 MS.gene037074:CDS 45.0%
AGAAGAAGAGAGCTGAAACC+AGG + chr2.1:52235401-52235420 MS.gene037074:CDS 45.0%
AGCAGAAAAGGAACGAGGAA+TGG + chr2.1:52235344-52235363 MS.gene037074:CDS 45.0%
AGGAGAGATCCTATCTAGGT+CGG - chr2.1:52237179-52237198 None:intergenic 45.0%
CTACAAGCGTGGTTATGGAA+AGG + chr2.1:52237040-52237059 MS.gene037074:CDS 45.0%
CTGAAACCAGGAAGCTTATC+TGG + chr2.1:52235413-52235432 MS.gene037074:CDS 45.0%
CTTTGAGCTTGAAAGGCCAT+AGG - chr2.1:52237494-52237513 None:intergenic 45.0%
CTTTGCAATTGTTGGGTGCT+TGG + chr2.1:52236146-52236165 MS.gene037074:intron 45.0%
GAAGAAGCAGAAAAGGAACG+AGG + chr2.1:52235339-52235358 MS.gene037074:CDS 45.0%
GAAGCGTGAAGCTAAGCTTA+AGG + chr2.1:52235590-52235609 MS.gene037074:CDS 45.0%
GAGAGGCAAACAACTTCCTA+TGG + chr2.1:52237475-52237494 MS.gene037074:CDS 45.0%
GCAGAAAAGGAACGAGGAAT+GGG + chr2.1:52235345-52235364 MS.gene037074:CDS 45.0%
GCATACCCATAGGTGACATA+TGG - chr2.1:52236903-52236922 None:intergenic 45.0%
GGATGGAGAACTAAACCAGT+TGG - chr2.1:52236617-52236636 None:intergenic 45.0%
GGCTAAGTGTCTCCAACAAT+TGG + chr2.1:52236267-52236286 MS.gene037074:intron 45.0%
GTACTCCTTAGCGTACTGTT+TGG - chr2.1:52235446-52235465 None:intergenic 45.0%
GTTGAGCCATATGTCACCTA+TGG + chr2.1:52236894-52236913 MS.gene037074:CDS 45.0%
TAGAGCCAAACAGTACGCTA+AGG + chr2.1:52235438-52235457 MS.gene037074:CDS 45.0%
TCTACTCCAGATAAGCTTCC+TGG - chr2.1:52235422-52235441 None:intergenic 45.0%
TCTGGACTGTCTCATCAAGT+TGG - chr2.1:52237254-52237273 None:intergenic 45.0%
TGAAGTGAGGTCCAACAGTA+AGG - chr2.1:52237455-52237474 None:intergenic 45.0%
TTCTTCTTCATGCCACCCAA+AGG - chr2.1:52237519-52237538 None:intergenic 45.0%
TTGCAGGTTCTTGGGAAACA+TGG + chr2.1:52237396-52237415 MS.gene037074:intron 45.0%
TTTGCGGTGATTATGTTGGC+AGG - chr2.1:52236311-52236330 None:intergenic 45.0%
! CGGTTGCTTTGTTCACTTTG+AGG - chr2.1:52236857-52236876 None:intergenic 45.0%
! TATGTTGAAGGTGGTGATGC+TGG + chr2.1:52237549-52237568 MS.gene037074:CDS 45.0%
!! ATGGGCATTGGTGAAGAAAC+AGG + chr2.1:52235363-52235382 MS.gene037074:CDS 45.0%
!! TTGTTTGCCTCTCTGAAGTG+AGG - chr2.1:52237468-52237487 None:intergenic 45.0%
!!! ATAAAATATTTTAATACAAT+GGG + chr2.1:52236469-52236488 MS.gene037074:intron 5.0%
!!! TAAAAAAATATGTTTTATTT+TGG - chr2.1:52235738-52235757 None:intergenic 5.0%
!!! TATAAAATATTTTAATACAA+TGG + chr2.1:52236468-52236487 MS.gene037074:intron 5.0%
AAGCTCAAAGCTCCTTTGGG+TGG + chr2.1:52237504-52237523 MS.gene037074:CDS 50.0%
AAGGAACGAGGAATGGGCAT+TGG + chr2.1:52235351-52235370 MS.gene037074:CDS 50.0%
CAACCGTGAATATGCTCCAC+AGG + chr2.1:52236871-52236890 MS.gene037074:CDS 50.0%
CGTGAAGCTAAGCTTAAGGG+TGG + chr2.1:52235594-52235613 MS.gene037074:CDS 50.0%
CTTGACCTATGTCCCGTGTA+TGG + chr2.1:52237300-52237319 MS.gene037074:intron 50.0%
GGAGAGATCCTATCTAGGTC+GGG - chr2.1:52237178-52237197 None:intergenic 50.0%
TGAACTGTCCCGACCTAGAT+AGG + chr2.1:52237167-52237186 MS.gene037074:intron 50.0%
TGACATATGGCTCAACCCTG+TGG - chr2.1:52236890-52236909 None:intergenic 50.0%
TGTTGGACCTCACTTCAGAG+AGG + chr2.1:52237458-52237477 MS.gene037074:CDS 50.0%
! AAGGTGGTGATGCTGGTAAC+AGG + chr2.1:52237556-52237575 MS.gene037074:CDS 50.0%
! AGGTGGTGATGCTGGTAACA+GGG + chr2.1:52237557-52237576 MS.gene037074:CDS 50.0%
! CGCTAAGGAGTACGATGACT+CGG + chr2.1:52235453-52235472 MS.gene037074:CDS 50.0%
CACCACCATACACGGGACAT+AGG - chr2.1:52237308-52237327 None:intergenic 55.0%
GACCTATGTCCCGTGTATGG+TGG + chr2.1:52237303-52237322 MS.gene037074:intron 55.0%
GCAGCTTCTGCGATTGAGAC+AGG + chr2.1:52235940-52235959 MS.gene037074:CDS 55.0%
! TGGTGATGCTGGTAACAGGG+AGG + chr2.1:52237560-52237579 MS.gene037074:CDS 55.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 52235295 52237617 52235295 ID=MS.gene037074
chr2.1 mRNA 52235295 52237617 52235295 ID=MS.gene037074.t1;Parent=MS.gene037074
chr2.1 exon 52235295 52235474 52235295 ID=MS.gene037074.t1.exon1;Parent=MS.gene037074.t1
chr2.1 CDS 52235295 52235474 52235295 ID=cds.MS.gene037074.t1;Parent=MS.gene037074.t1
chr2.1 exon 52235570 52235667 52235570 ID=MS.gene037074.t1.exon2;Parent=MS.gene037074.t1
chr2.1 CDS 52235570 52235667 52235570 ID=cds.MS.gene037074.t1;Parent=MS.gene037074.t1
chr2.1 exon 52235904 52235961 52235904 ID=MS.gene037074.t1.exon3;Parent=MS.gene037074.t1
chr2.1 CDS 52235904 52235961 52235904 ID=cds.MS.gene037074.t1;Parent=MS.gene037074.t1
chr2.1 exon 52236837 52236916 52236837 ID=MS.gene037074.t1.exon4;Parent=MS.gene037074.t1
chr2.1 CDS 52236837 52236916 52236837 ID=cds.MS.gene037074.t1;Parent=MS.gene037074.t1
chr2.1 exon 52237007 52237109 52237007 ID=MS.gene037074.t1.exon5;Parent=MS.gene037074.t1
chr2.1 CDS 52237007 52237109 52237007 ID=cds.MS.gene037074.t1;Parent=MS.gene037074.t1
chr2.1 exon 52237402 52237617 52237402 ID=MS.gene037074.t1.exon6;Parent=MS.gene037074.t1
chr2.1 CDS 52237402 52237617 52237402 ID=cds.MS.gene037074.t1;Parent=MS.gene037074.t1
Gene Sequence

>MS.gene037074

ATGGCCAAAGAGGAAGTGAAAACCGTTGTTCCTGAATCTGTTTTGAAGAAGCAGAAAAGGAACGAGGAATGGGCATTGGTGAAGAAACAGGATCAAGAATCAGCGAAGAAGAAGAGAGCTGAAACCAGGAAGCTTATCTGGAGTAGAGCCAAACAGTACGCTAAGGAGTACGATGACTCGGTAATATTCTAATTATAATGATTAAGTTAATCTAATTCGATTTAATCATTCATTTATTTATTGATTTGTTTGTTTGTTTAATTTGTGTGTTTCAGCAAAAGGAGTTGATTAGGTTGAAGCGTGAAGCTAAGCTTAAGGGTGGATTTTATGTTGATCCTGAAGCTAAGCTTTTGTTCATTATCAGGATCAGAGGGTATGTCATTTATCTTGTCATGTTTTTACTGTATTTTGTACTAGATTAATTATGTTTTTAGTTATCACCAAAATAAAACATATTTTTTTATATAATTTTGTTCTGTTTTGGAAAAATGATAGAGGAAAAAATGAATGCATTTAGATTCTAAATTGAATAAAATGTATCCTGTGTGGGTTATTCTTATTTGTTTTGTTAGTAATTAATGAAAACTTTATCATTTTTTATAATTTCAGTATCAATGCAATGGACCCAAAATCAAGGAAGATTTTGCAGCTTCTGCGATTGAGACAGGTAAATCAGATTGGATTGGTTTGTTGCAATTGGTTTTGTTCTTGATGGGTGTTTGGTTAGAAACTTTGTTTTAGTTGATGTATTTGTCGCTGGCTGTATGTGTACCGTTTAAAGTTATAATCAGAATCTTCTTTACTTGTTTTGTTACTTTATTATAATTGAATGTGTTGCAATTCTGATTGCACTTTGCAATTGTTGGGTGCTTGGTTGAGTTTTTCAAAGTGCCTTCAATTAAGGGATCAATAGTTATTATAGGAAGCGTATAGCTACTTGATTAAAATGTGATAATTGAGCTTTCATCTTATGGCTAAGTGTCTCCAACAATTGGTTATTTTCATGTGATAAGCCTGCCAACATAATCACCGCAAAATTACTCCTCTATCTGAATTATTAATACATTAGAGTTTAAAGTTATTTTGCTTTTCACCAAAAAAACTTTTTTTTCCTTTTTTGTATTGTTTAGGCTGTTCATCTATATAAGAATGGTAATTACTGAAATGAATGAATATAAAATATTTTAATACAATGGGTAATATCTTATGCATTGACTGTTTATTCATGTGTACTAATTATTTGATACTGAGCAGGATTTGCCTGTATGATAACCTTTTACTTAACTATTGAAGATTTTCATAGAATTCACCCATTATAACCAACTGGTTTAGTTCTCCATCCTTGTCATTGTCAATTTTCTGAATAAAAAAGTTTTTTTTTTTAGTTTAGAGATAAGGTGTGGTGTGCTGACATTTTGACCTAGTATTTCTCTTTAATTTTTGGCTTCTGGCTTTTTTACTTCATCTCACACATACTCGTATCTTCTAGACTCGGTGCAATTTATCAGTGTAGGCTTATTCTTCTATTTGTTTTGGCTGCAGATCTTCAATGGTGTCTTCCTCAAAGTGAACAAAGCAACCGTGAATATGCTCCACAGGGTTGAGCCATATGTCACCTATGGGTATGCAGAATCTCAAATTATATGAAGTCTAGATTATAACTCATTATAACTCTGTATGGGTTATTAATGCATGCTATTTTTTTTTATTAGTTATCCCAATTTGAAGAGTGTCAGAGAATTGATCTACAAGCGTGGTTATGGAAAGGTTGATAGGCAGAGAATTGCTTTGACAGATAACTCTATCATCGAACAGGTCTGTCTTTGATTTGTACACTTTCCCTGCTTTCATTCGATTACACAGTTGTCAATCTGAACTGTCCCGACCTAGATAGGATCTCTCCTCATTCTGACTTTGTATTTTACCCAAATTTTCAAAGTTAGAATCTGAGCTGTTCCAACTTGATGAGACAGTCCAGATTGCGTGACTTTGTCTAATGTGATTTCTTGACCTATGTCCCGTGTATGGTGGTGCTATTATTATTGTTGAAGGTTATGTTGCCAGTTATTTTTTTCTATTTTGCGTCTGACATAATATTCAATTGCAGGTTCTTGGGAAACATGGTATCATTTGCATTGAAGATCTCATTCATGAGATCCTTACTGTTGGACCTCACTTCAGAGAGGCAAACAACTTCCTATGGCCTTTCAAGCTCAAAGCTCCTTTGGGTGGCATGAAGAAGAAGAGAAATCACTATGTTGAAGGTGGTGATGCTGGTAACAGGGAGGACTACATCAATGAACTCATTAGAAGGATGAATTAG
Protein sequence

>MS.gene037074.t1

MAKEEVKTVVPESVLKKQKRNEEWALVKKQDQESAKKKRAETRKLIWSRAKQYAKEYDDSQKELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAMDPKSRKILQLLRLRQIFNGVFLKVNKATVNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKVDRQRIALTDNSIIEQVLGKHGIICIEDLIHEILTVGPHFREANNFLWPFKLKAPLGGMKKKRNHYVEGGDAGNREDYINELIRRMN