Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67179.t1 | XP_024641268.1 | 95.6 | 270 | 12 | 0 | 1 | 270 | 1 | 270 | 1.20E-145 | 525.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67179.t1 | Q9LW60 | 43.5 | 278 | 129 | 7 | 1 | 269 | 1 | 259 | 1.9e-51 | 204.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67179.t1 | A0A072VHH4 | 94.2 | 274 | 12 | 1 | 1 | 270 | 1 | 274 | 4.7e-144 | 520.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049419 | MS.gene67179 | -0.802885 | 4.54E-49 | -1.69E-46 |
| MS.gene051676 | MS.gene67179 | 0.810672 | 1.03E-50 | -1.69E-46 |
| MS.gene053045 | MS.gene67179 | 0.800664 | 1.30E-48 | -1.69E-46 |
| MS.gene053094 | MS.gene67179 | 0.818157 | 2.27E-52 | -1.69E-46 |
| MS.gene053298 | MS.gene67179 | 0.825521 | 4.48E-54 | -1.69E-46 |
| MS.gene053340 | MS.gene67179 | 0.997062 | 2.65E-236 | -1.69E-46 |
| MS.gene053963 | MS.gene67179 | 0.824292 | 8.73E-54 | -1.69E-46 |
| MS.gene054222 | MS.gene67179 | 0.807503 | 4.90E-50 | -1.69E-46 |
| MS.gene05469 | MS.gene67179 | 0.853948 | 1.70E-61 | -1.69E-46 |
| MS.gene055603 | MS.gene67179 | 0.813941 | 1.98E-51 | -1.69E-46 |
| MS.gene056068 | MS.gene67179 | 0.806294 | 8.82E-50 | -1.69E-46 |
| MS.gene05985 | MS.gene67179 | -0.809107 | 2.23E-50 | -1.69E-46 |
| MS.gene059872 | MS.gene67179 | -0.802284 | 6.04E-49 | -1.69E-46 |
| MS.gene060879 | MS.gene67179 | 0.810813 | 9.56E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67179.t1 | MTR_1g041475 | 94.161 | 274 | 12 | 1 | 1 | 270 | 1 | 274 | 0.0 | 531 |
| MS.gene67179.t1 | MTR_1g075730 | 60.219 | 274 | 105 | 1 | 1 | 270 | 1 | 274 | 5.17e-117 | 337 |
| MS.gene67179.t1 | MTR_1g075730 | 58.993 | 278 | 106 | 1 | 1 | 270 | 1 | 278 | 1.14e-115 | 333 |
| MS.gene67179.t1 | MTR_8g463130 | 35.938 | 256 | 130 | 5 | 41 | 269 | 5 | 253 | 7.02e-36 | 129 |
| MS.gene67179.t1 | MTR_8g463130 | 35.938 | 256 | 130 | 5 | 41 | 269 | 33 | 281 | 1.01e-35 | 129 |
| MS.gene67179.t1 | MTR_2g008850 | 33.333 | 267 | 144 | 5 | 30 | 269 | 21 | 280 | 2.67e-31 | 117 |
| MS.gene67179.t1 | MTR_2g078760 | 35.798 | 257 | 129 | 6 | 41 | 269 | 5 | 253 | 7.82e-31 | 115 |
| MS.gene67179.t1 | MTR_4g094208 | 31.071 | 280 | 159 | 5 | 17 | 269 | 4 | 276 | 1.04e-30 | 115 |
| MS.gene67179.t1 | MTR_2g078760 | 35.798 | 257 | 129 | 6 | 41 | 269 | 84 | 332 | 2.67e-30 | 116 |
| MS.gene67179.t1 | MTR_2g008850 | 34.513 | 226 | 119 | 4 | 71 | 269 | 11 | 234 | 7.02e-30 | 112 |
| MS.gene67179.t1 | MTR_5g063940 | 34.361 | 227 | 118 | 5 | 71 | 269 | 11 | 234 | 1.05e-29 | 112 |
| MS.gene67179.t1 | MTR_5g063940 | 34.361 | 227 | 118 | 5 | 71 | 269 | 58 | 281 | 7.53e-29 | 111 |
| MS.gene67179.t1 | MTR_7g083300 | 69.880 | 83 | 19 | 3 | 79 | 159 | 14 | 92 | 1.98e-28 | 104 |
| MS.gene67179.t1 | MTR_3g074610 | 32.159 | 227 | 123 | 5 | 71 | 269 | 58 | 281 | 4.40e-25 | 101 |
| MS.gene67179.t1 | MTR_1g014640 | 30.233 | 215 | 125 | 5 | 80 | 269 | 109 | 323 | 1.25e-23 | 98.2 |
| MS.gene67179.t1 | MTR_1g013400 | 30.233 | 215 | 125 | 5 | 80 | 269 | 109 | 323 | 1.25e-23 | 98.2 |
| MS.gene67179.t1 | MTR_4g094542 | 30.859 | 256 | 142 | 5 | 41 | 269 | 117 | 364 | 3.08e-23 | 97.4 |
| MS.gene67179.t1 | MTR_3g105730 | 29.767 | 215 | 126 | 5 | 80 | 269 | 44 | 258 | 1.45e-22 | 94.4 |
| MS.gene67179.t1 | MTR_3g105730 | 29.767 | 215 | 126 | 5 | 80 | 269 | 66 | 280 | 1.51e-22 | 94.7 |
| MS.gene67179.t1 | MTR_2g078760 | 33.803 | 213 | 107 | 5 | 41 | 226 | 84 | 289 | 2.51e-18 | 82.8 |
| MS.gene67179.t1 | MTR_1g115570 | 28.111 | 217 | 127 | 8 | 79 | 270 | 126 | 338 | 1.60e-16 | 78.6 |
| MS.gene67179.t1 | MTR_2g078760 | 40.741 | 135 | 71 | 3 | 41 | 173 | 84 | 211 | 5.60e-16 | 75.9 |
| MS.gene67179.t1 | MTR_5g024340 | 24.498 | 249 | 148 | 7 | 59 | 269 | 99 | 345 | 2.87e-13 | 69.3 |
| MS.gene67179.t1 | MTR_3g091060 | 25.974 | 231 | 142 | 5 | 67 | 270 | 113 | 341 | 3.74e-13 | 68.9 |
| MS.gene67179.t1 | MTR_5g071550 | 26.068 | 234 | 129 | 8 | 73 | 269 | 148 | 374 | 1.87e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67179.t1 | AT3G23360 | 43.011 | 279 | 129 | 7 | 1 | 269 | 1 | 259 | 3.49e-68 | 212 |
| MS.gene67179.t1 | AT4G28400 | 34.701 | 268 | 138 | 7 | 30 | 269 | 2 | 260 | 1.85e-35 | 128 |
| MS.gene67179.t1 | AT4G28400 | 35.019 | 257 | 131 | 6 | 41 | 269 | 34 | 282 | 3.50e-35 | 127 |
| MS.gene67179.t1 | AT2G20630 | 33.852 | 257 | 134 | 6 | 41 | 269 | 30 | 278 | 6.83e-35 | 127 |
| MS.gene67179.t1 | AT2G20630 | 33.463 | 257 | 135 | 6 | 41 | 269 | 30 | 278 | 2.12e-32 | 120 |
| MS.gene67179.t1 | AT3G15260 | 32.374 | 278 | 151 | 7 | 20 | 269 | 20 | 288 | 3.96e-31 | 117 |
| MS.gene67179.t1 | AT3G15260 | 32.374 | 278 | 151 | 7 | 20 | 269 | 20 | 288 | 3.96e-31 | 117 |
| MS.gene67179.t1 | AT1G22280 | 33.333 | 225 | 121 | 4 | 72 | 269 | 58 | 280 | 7.28e-28 | 108 |
| MS.gene67179.t1 | AT1G78200 | 33.628 | 226 | 116 | 6 | 75 | 269 | 15 | 237 | 3.58e-27 | 105 |
| MS.gene67179.t1 | AT1G78200 | 33.628 | 226 | 116 | 6 | 75 | 269 | 15 | 237 | 3.58e-27 | 105 |
| MS.gene67179.t1 | AT1G22280 | 32.900 | 231 | 120 | 5 | 72 | 269 | 58 | 286 | 4.10e-27 | 106 |
| MS.gene67179.t1 | AT1G78200 | 32.932 | 249 | 133 | 6 | 52 | 269 | 37 | 282 | 4.92e-27 | 106 |
| MS.gene67179.t1 | AT1G78200 | 32.932 | 249 | 133 | 6 | 52 | 269 | 37 | 282 | 4.92e-27 | 106 |
| MS.gene67179.t1 | AT1G78200 | 32.932 | 249 | 133 | 6 | 52 | 269 | 37 | 282 | 4.92e-27 | 106 |
| MS.gene67179.t1 | AT1G34750 | 30.035 | 283 | 167 | 5 | 15 | 269 | 2 | 281 | 6.59e-26 | 103 |
| MS.gene67179.t1 | AT1G34750 | 30.035 | 283 | 167 | 5 | 15 | 269 | 2 | 281 | 6.59e-26 | 103 |
| MS.gene67179.t1 | AT1G34750 | 30.035 | 283 | 167 | 5 | 15 | 269 | 2 | 281 | 6.59e-26 | 103 |
| MS.gene67179.t1 | AT4G31750 | 30.233 | 215 | 125 | 5 | 80 | 269 | 65 | 279 | 2.38e-24 | 99.8 |
| MS.gene67179.t1 | AT4G31750 | 30.233 | 215 | 125 | 5 | 80 | 269 | 65 | 279 | 2.38e-24 | 99.8 |
| MS.gene67179.t1 | AT4G31750 | 30.233 | 215 | 125 | 5 | 80 | 269 | 65 | 279 | 3.13e-24 | 99.4 |
| MS.gene67179.t1 | AT5G24940 | 28.767 | 219 | 129 | 6 | 77 | 269 | 62 | 279 | 1.41e-22 | 96.7 |
| MS.gene67179.t1 | AT2G34740 | 28.906 | 256 | 146 | 5 | 42 | 269 | 87 | 334 | 9.77e-22 | 93.2 |
| MS.gene67179.t1 | AT5G10740 | 26.512 | 215 | 133 | 4 | 80 | 269 | 65 | 279 | 2.17e-20 | 89.7 |
| MS.gene67179.t1 | AT5G10740 | 26.512 | 215 | 133 | 4 | 80 | 269 | 65 | 279 | 2.17e-20 | 89.7 |
| MS.gene67179.t1 | AT4G28400 | 32.710 | 214 | 108 | 6 | 41 | 226 | 34 | 239 | 1.37e-18 | 83.2 |
| MS.gene67179.t1 | AT5G53140 | 25.581 | 215 | 135 | 3 | 80 | 269 | 133 | 347 | 4.37e-16 | 77.8 |
| MS.gene67179.t1 | AT5G53140 | 25.581 | 215 | 135 | 3 | 80 | 269 | 133 | 347 | 4.37e-16 | 77.8 |
Find 50 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAATTAGCTTGCAAATATT+TGG | 0.174722 | 1.2:+25984579 | None:intergenic |
| TGCTCCCTTGAGTGTTTCTT+TGG | 0.234406 | 1.2:+25983786 | None:intergenic |
| ACATCTGTGATGATAATAAA+TGG | 0.273873 | 1.2:-25983697 | MS.gene67179:CDS |
| TGATAAGATTCACTGCTTCT+TGG | 0.281632 | 1.2:+25982685 | None:intergenic |
| AACTTGTGGTTGGAAGTTAT+TGG | 0.296396 | 1.2:-25982947 | MS.gene67179:CDS |
| GTGGAGCATGATTGGATTAA+TGG | 0.328700 | 1.2:-25984712 | MS.gene67179:CDS |
| TAGTACTGAATTTGTGATCT+TGG | 0.340761 | 1.2:-25982916 | MS.gene67179:CDS |
| GAATGATTAAACATGAAATA+TGG | 0.342084 | 1.2:+25982592 | None:intergenic |
| CTTAGGAATCTTTGATACTT+TGG | 0.361268 | 1.2:-25984617 | MS.gene67179:CDS |
| TCTGTGATACCAATGTTTCT+TGG | 0.370921 | 1.2:+25983579 | None:intergenic |
| ACATGATGACCATGTGATAT+TGG | 0.372321 | 1.2:+25984736 | None:intergenic |
| AAGAAGCAGTGAATCTTATC+AGG | 0.393702 | 1.2:-25982683 | MS.gene67179:CDS |
| TCAGATGAAACATGCATCAT+AGG | 0.400144 | 1.2:-25983724 | MS.gene67179:CDS |
| GGAATCTTTGATACTTTGGT+TGG | 0.403046 | 1.2:-25984613 | MS.gene67179:CDS |
| ACAAGAAGCAGCAGAGTGTT+TGG | 0.405610 | 1.2:-25982646 | MS.gene67179:CDS |
| AGGGTGAAACTCTCATGTTT+AGG | 0.405777 | 1.2:-25984814 | MS.gene67179:CDS |
| TCTTGGCAAGCAATGGCATA+TGG | 0.410623 | 1.2:-25982899 | MS.gene67179:CDS |
| TTGATTTGCACAGGCACTTA+GGG | 0.431266 | 1.2:-25984833 | MS.gene67179:intron |
| GTGATACAAAGAGAGCAAAT+TGG | 0.443813 | 1.2:-25984658 | MS.gene67179:CDS |
| GTAAGAAGAAATCATGGAGT+TGG | 0.448595 | 1.2:-25984781 | MS.gene67179:CDS |
| ATCATGTGGTGGAGCATGAT+TGG | 0.450402 | 1.2:-25984720 | MS.gene67179:CDS |
| ATTGATTTGCACAGGCACTT+AGG | 0.458682 | 1.2:-25984834 | MS.gene67179:intron |
| AATTATGTTAGTCTCATTTG+AGG | 0.462042 | 1.2:-25983816 | MS.gene67179:intron |
| AGAAAGGTAAGAAGAAATCA+TGG | 0.465978 | 1.2:-25984787 | MS.gene67179:CDS |
| TGGCTAAGGAAGCATTGGTT+AGG | 0.478204 | 1.2:-25982626 | MS.gene67179:CDS |
| AGCAGCAGAGTGTTTGGCTA+AGG | 0.497684 | 1.2:-25982640 | MS.gene67179:CDS |
| GAGACAGAATTGTGGTACTT+AGG | 0.501693 | 1.2:-25984634 | MS.gene67179:CDS |
| TTCTAAAGCTTCAGAACTTG+TGG | 0.505454 | 1.2:-25982961 | MS.gene67179:CDS |
| AAAGCTTCAGAACTTGTGGT+TGG | 0.510242 | 1.2:-25982957 | MS.gene67179:CDS |
| GGTGTAGCTTATCAGACAGT+TGG | 0.512199 | 1.2:-25983619 | MS.gene67179:CDS |
| AAACACTCTGCTGCTTCTTG+TGG | 0.521856 | 1.2:+25982648 | None:intergenic |
| CTTGGCAAGCAATGGCATAT+GGG | 0.527736 | 1.2:-25982898 | MS.gene67179:CDS |
| CTCATGTTTAGGAAATAGAA+AGG | 0.530586 | 1.2:-25984803 | MS.gene67179:CDS |
| GTGTTTGGCTAAGGAAGCAT+TGG | 0.535898 | 1.2:-25982631 | MS.gene67179:CDS |
| ATCAATCATCCAAGAAACAT+TGG | 0.538131 | 1.2:-25983588 | MS.gene67179:CDS |
| GAGTTGGAAGCAAGCCATCA+TGG | 0.546613 | 1.2:-25984765 | MS.gene67179:CDS |
| AAAAGCCAAAGAAACACTCA+AGG | 0.578073 | 1.2:-25983791 | MS.gene67179:CDS |
| GAATCTTATCAGGCACATAG+AGG | 0.593854 | 1.2:-25982673 | MS.gene67179:CDS |
| AGTTCTGTAATCTCCGATGT+TGG | 0.599281 | 1.2:+25983657 | None:intergenic |
| AGGTAATGCAACAGGTACAA+AGG | 0.604493 | 1.2:-25982985 | MS.gene67179:intron |
| TTTGTGATCTTGGCAAGCAA+TGG | 0.607158 | 1.2:-25982906 | MS.gene67179:CDS |
| ACACTCAAGGGAGCATACCT+AGG | 0.633010 | 1.2:-25983778 | MS.gene67179:CDS |
| ATCACATGGTCATCATGTGG+TGG | 0.639046 | 1.2:-25984731 | MS.gene67179:CDS |
| AAACTTGTGCTAGCCAACAT+CGG | 0.644251 | 1.2:-25983670 | MS.gene67179:CDS |
| GATATTGGCATCATCCATGA+TGG | 0.650715 | 1.2:+25984751 | None:intergenic |
| GGCAAGCAATGGCATATGGG+AGG | 0.662078 | 1.2:-25982895 | MS.gene67179:intron |
| AAAGCCAAAGAAACACTCAA+GGG | 0.667414 | 1.2:-25983790 | MS.gene67179:CDS |
| TGGATGATGCCAATATCACA+TGG | 0.692201 | 1.2:-25984745 | MS.gene67179:CDS |
| AAATTGGTGAGACAGAATTG+TGG | 0.696148 | 1.2:-25984642 | MS.gene67179:CDS |
| AATATCACATGGTCATCATG+TGG | 0.739236 | 1.2:-25984734 | MS.gene67179:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATAAGAAAAAAAATATTTA+AGG | - | chr1.2:25982673-25982692 | MS.gene67179:CDS | 10.0% |
| !!! | TTTATGTATTTATTTCTATA+AGG | - | chr1.2:25983224-25983243 | MS.gene67179:intron | 10.0% |
| !! | TTTAAGGGAAAAATAATATA+TGG | - | chr1.2:25982689-25982708 | MS.gene67179:CDS | 15.0% |
| !! | AATGAAAATTGAGAAGTAAA+AGG | - | chr1.2:25983661-25983680 | MS.gene67179:CDS | 20.0% |
| !! | ATAAAGAACATAATCTCATA+AGG | + | chr1.2:25982722-25982741 | None:intergenic | 20.0% |
| !! | ATGAAAATTGAGAAGTAAAA+GGG | - | chr1.2:25983662-25983681 | MS.gene67179:CDS | 20.0% |
| !! | GAATGATTAAACATGAAATA+TGG | + | chr1.2:25985017-25985036 | None:intergenic | 20.0% |
| !! | GAGAAAATAGGAAATTATAT+GGG | + | chr1.2:25983727-25983746 | None:intergenic | 20.0% |
| !! | TAAAGAACATAATCTCATAA+GGG | + | chr1.2:25982721-25982740 | None:intergenic | 20.0% |
| !! | TAATATTGTTATATTGAGAG+AGG | + | chr1.2:25984487-25984506 | None:intergenic | 20.0% |
| !! | TGAGAAAATAGGAAATTATA+TGG | + | chr1.2:25983728-25983747 | None:intergenic | 20.0% |
| !! | TTTCAAATTATTAGTTGTGT+CGG | - | chr1.2:25983568-25983587 | MS.gene67179:intron | 20.0% |
| !!! | ATAATTAGCTTGCAAATATT+TGG | + | chr1.2:25983030-25983049 | None:intergenic | 20.0% |
| !!! | TATATTTTCATAAGCTATCA+TGG | - | chr1.2:25983288-25983307 | MS.gene67179:intron | 20.0% |
| !!! | TCTTTTTGAAATGTTTAGAA+TGG | - | chr1.2:25984081-25984100 | MS.gene67179:intron | 20.0% |
| !!! | TTACTCAGAATTTTTTGTAA+TGG | + | chr1.2:25984756-25984775 | None:intergenic | 20.0% |
| !!! | TTGTAATGGATAAATATCTT+GGG | + | chr1.2:25984742-25984761 | None:intergenic | 20.0% |
| !!! | TTTGTAATGGATAAATATCT+TGG | + | chr1.2:25984743-25984762 | None:intergenic | 20.0% |
| ! | ACATCTGTGATGATAATAAA+TGG | - | chr1.2:25983909-25983928 | MS.gene67179:intron | 25.0% |
| ! | AGTCTCACAAATACTTATAT+CGG | - | chr1.2:25983378-25983397 | MS.gene67179:intron | 25.0% |
| ! | TAAGCTATGAAAATAGCTTA+TGG | - | chr1.2:25984264-25984283 | MS.gene67179:intron | 25.0% |
| ! | TGGATATAAGATGAAAACTA+TGG | - | chr1.2:25983319-25983338 | MS.gene67179:intron | 25.0% |
| ! | TTGGTTGTCACATTTAATAA+TGG | - | chr1.2:25984556-25984575 | MS.gene67179:intron | 25.0% |
| !! | AATTATGTTAGTCTCATTTG+AGG | - | chr1.2:25983790-25983809 | MS.gene67179:CDS | 25.0% |
| !! | CTATAAGTGAGTATATGTTT+TGG | - | chr1.2:25984537-25984556 | MS.gene67179:intron | 25.0% |
| !!! | TCCATCTTTTTCATTCAATT+GGG | - | chr1.2:25984434-25984453 | MS.gene67179:intron | 25.0% |
| !!! | TGTAATGGATAAATATCTTG+GGG | + | chr1.2:25984741-25984760 | None:intergenic | 25.0% |
| !!! | TTCCATCTTTTTCATTCAAT+TGG | - | chr1.2:25984433-25984452 | MS.gene67179:intron | 25.0% |
| AAGCTATCATGGAAAGTTTA+TGG | - | chr1.2:25983299-25983318 | MS.gene67179:intron | 30.0% | |
| ACTGTCATAAGAATTTGAGA+TGG | + | chr1.2:25984325-25984344 | None:intergenic | 30.0% | |
| AGAAAGGTAAGAAGAAATCA+TGG | - | chr1.2:25982819-25982838 | MS.gene67179:intron | 30.0% | |
| ATCAATCATCCAAGAAACAT+TGG | - | chr1.2:25984018-25984037 | MS.gene67179:intron | 30.0% | |
| ATCTCAAATTCTTATGACAG+TGG | - | chr1.2:25984324-25984343 | MS.gene67179:intron | 30.0% | |
| CTCATGTTTAGGAAATAGAA+AGG | - | chr1.2:25982803-25982822 | MS.gene67179:intron | 30.0% | |
| CTTAGGAATCTTTGATACTT+TGG | - | chr1.2:25982989-25983008 | MS.gene67179:intron | 30.0% | |
| CTTATTCCATTGTTACATGA+AGG | - | chr1.2:25982638-25982657 | MS.gene67179:CDS | 30.0% | |
| CTTGAATGGAAGAACAAAAT+AGG | - | chr1.2:25983160-25983179 | MS.gene67179:intron | 30.0% | |
| GCAATAAATCACAATGCATT+TGG | + | chr1.2:25983689-25983708 | None:intergenic | 30.0% | |
| GTCTTTGCTTGTTTACTTAT+TGG | - | chr1.2:25983446-25983465 | MS.gene67179:intron | 30.0% | |
| TCATCACCTACAAAATACAT+AGG | + | chr1.2:25984897-25984916 | None:intergenic | 30.0% | |
| TCCCAATTGAATGAAAAAGA+TGG | + | chr1.2:25984438-25984457 | None:intergenic | 30.0% | |
| ! | AGATTTTCACTTCAAAGTCA+AGG | - | chr1.2:25982592-25982611 | MS.gene67179:CDS | 30.0% |
| ! | CATAAGAATTTGAGATGGTT+TGG | + | chr1.2:25984320-25984339 | None:intergenic | 30.0% |
| ! | CCAGAAGTATATGAGAAAAT+AGG | + | chr1.2:25983739-25983758 | None:intergenic | 30.0% |
| ! | CCTATTTTCTCATATACTTC+TGG | - | chr1.2:25983736-25983755 | MS.gene67179:CDS | 30.0% |
| ! | TAGTACTGAATTTGTGATCT+TGG | - | chr1.2:25984690-25984709 | MS.gene67179:CDS | 30.0% |
| ! | TTCTGAGTAAAACATTTTCG+AGG | - | chr1.2:25984766-25984785 | MS.gene67179:CDS | 30.0% |
| ! | TTTTGACAAGAATCTCAAAG+AGG | - | chr1.2:25983049-25983068 | MS.gene67179:intron | 30.0% |
| !! | GAAATTCTATTGATTTGCAC+AGG | - | chr1.2:25982764-25982783 | MS.gene67179:intron | 30.0% |
| AAAAGCCAAAGAAACACTCA+AGG | - | chr1.2:25983815-25983834 | MS.gene67179:intron | 35.0% | |
| AAAGAGCCTTCATGTAACAA+TGG | + | chr1.2:25982647-25982666 | None:intergenic | 35.0% | |
| AAAGCCAAAGAAACACTCAA+GGG | - | chr1.2:25983816-25983835 | MS.gene67179:intron | 35.0% | |
| AAATTGGTGAGACAGAATTG+TGG | - | chr1.2:25982964-25982983 | MS.gene67179:CDS | 35.0% | |
| AACTTGTGGTTGGAAGTTAT+TGG | - | chr1.2:25984659-25984678 | MS.gene67179:CDS | 35.0% | |
| AAGAAGCAGTGAATCTTATC+AGG | - | chr1.2:25984923-25984942 | MS.gene67179:intron | 35.0% | |
| AAGCAGTATTAGGTCATGTT+TGG | - | chr1.2:25984130-25984149 | MS.gene67179:intron | 35.0% | |
| AATATCACATGGTCATCATG+TGG | - | chr1.2:25982872-25982891 | MS.gene67179:intron | 35.0% | |
| AATCCAAACAAACCCTAAGT+AGG | - | chr1.2:25984368-25984387 | MS.gene67179:intron | 35.0% | |
| ACATGATGACCATGTGATAT+TGG | + | chr1.2:25982873-25982892 | None:intergenic | 35.0% | |
| GGAATCTTTGATACTTTGGT+TGG | - | chr1.2:25982993-25983012 | MS.gene67179:intron | 35.0% | |
| GTAAGAAGAAATCATGGAGT+TGG | - | chr1.2:25982825-25982844 | MS.gene67179:intron | 35.0% | |
| GTGATACAAAGAGAGCAAAT+TGG | - | chr1.2:25982948-25982967 | MS.gene67179:CDS | 35.0% | |
| TCAGATGAAACATGCATCAT+AGG | - | chr1.2:25983882-25983901 | MS.gene67179:intron | 35.0% | |
| TCTGTGATACCAATGTTTCT+TGG | + | chr1.2:25984030-25984049 | None:intergenic | 35.0% | |
| TGATAAGATTCACTGCTTCT+TGG | + | chr1.2:25984924-25984943 | None:intergenic | 35.0% | |
| ! | AGAACTGTTTTGTGTAGAGA+TGG | - | chr1.2:25983966-25983985 | MS.gene67179:intron | 35.0% |
| ! | AGATGGTTTGGAAGAACTTA+TGG | + | chr1.2:25984308-25984327 | None:intergenic | 35.0% |
| ! | ATCAATGATGCTTTTGAGCT+TGG | - | chr1.2:25983131-25983150 | MS.gene67179:intron | 35.0% |
| ! | GAGTCTCCTATGTATTTTGT+AGG | - | chr1.2:25984888-25984907 | MS.gene67179:intron | 35.0% |
| ! | GTAATTACAAGTGTCGTTGT+CGG | + | chr1.2:25983531-25983550 | None:intergenic | 35.0% |
| ! | TACTTATTGGCTACAAAGCA+CGG | - | chr1.2:25983459-25983478 | MS.gene67179:intron | 35.0% |
| ! | TCAATGATGCTTTTGAGCTT+GGG | - | chr1.2:25983132-25983151 | MS.gene67179:intron | 35.0% |
| !! | AACTGATTTGTGTCCTACTT+AGG | + | chr1.2:25984384-25984403 | None:intergenic | 35.0% |
| !! | AATGGCTATGTCGATTCATT+TGG | - | chr1.2:25984099-25984118 | MS.gene67179:intron | 35.0% |
| !! | ACTGATTTGTGTCCTACTTA+GGG | + | chr1.2:25984383-25984402 | None:intergenic | 35.0% |
| !! | ATGGCTATGTCGATTCATTT+GGG | - | chr1.2:25984100-25984119 | MS.gene67179:intron | 35.0% |
| !! | GCTCAAAAGCATCATTGATT+TGG | + | chr1.2:25983130-25983149 | None:intergenic | 35.0% |
| !! | TTCTAAAGCTTCAGAACTTG+TGG | - | chr1.2:25984645-25984664 | MS.gene67179:CDS | 35.0% |
| !!! | TGATCTTTGTTTTTGCACCT+AGG | + | chr1.2:25983848-25983867 | None:intergenic | 35.0% |
| !!! | TGGTATCACAGACTTTTTTC+AGG | - | chr1.2:25984038-25984057 | MS.gene67179:intron | 35.0% |
| AAACTTGTGCTAGCCAACAT+CGG | - | chr1.2:25983936-25983955 | MS.gene67179:intron | 40.0% | |
| AAAGCTTCAGAACTTGTGGT+TGG | - | chr1.2:25984649-25984668 | MS.gene67179:CDS | 40.0% | |
| ACTAATTCAGTGCTGCATTC+TGG | + | chr1.2:25984414-25984433 | None:intergenic | 40.0% | |
| AGGGTGAAACTCTCATGTTT+AGG | - | chr1.2:25982792-25982811 | MS.gene67179:intron | 40.0% | |
| AGGTAATGCAACAGGTACAA+AGG | - | chr1.2:25984621-25984640 | MS.gene67179:CDS | 40.0% | |
| AGTTCTGTAATCTCCGATGT+TGG | + | chr1.2:25983952-25983971 | None:intergenic | 40.0% | |
| ATCCGTGCTTCATAGCTTAT+TGG | - | chr1.2:25983630-25983649 | MS.gene67179:CDS | 40.0% | |
| CTCCAATAAGCTATGAAGCA+CGG | + | chr1.2:25983635-25983654 | None:intergenic | 40.0% | |
| GAAGTAACAGCATGTGAATC+AGG | - | chr1.2:25984601-25984620 | MS.gene67179:CDS | 40.0% | |
| GAATCTTATCAGGCACATAG+AGG | - | chr1.2:25984933-25984952 | MS.gene67179:intron | 40.0% | |
| GAGACAGAATTGTGGTACTT+AGG | - | chr1.2:25982972-25982991 | MS.gene67179:CDS | 40.0% | |
| GATATTGGCATCATCCATGA+TGG | + | chr1.2:25982858-25982877 | None:intergenic | 40.0% | |
| GTGGAGCATGATTGGATTAA+TGG | - | chr1.2:25982894-25982913 | MS.gene67179:intron | 40.0% | |
| TAAGCTATGAAGCACGGATA+TGG | + | chr1.2:25983629-25983648 | None:intergenic | 40.0% | |
| TGGATGATGCCAATATCACA+TGG | - | chr1.2:25982861-25982880 | MS.gene67179:intron | 40.0% | |
| TGTGAATCAGGTAATGCAAC+AGG | - | chr1.2:25984613-25984632 | MS.gene67179:CDS | 40.0% | |
| TTTGTGATCTTGGCAAGCAA+TGG | - | chr1.2:25984700-25984719 | MS.gene67179:CDS | 40.0% | |
| ! | TGTCCTACTTAGGGTTTGTT+TGG | + | chr1.2:25984374-25984393 | None:intergenic | 40.0% |
| !! | ATGTCGATTCATTTGGGAGA+TGG | - | chr1.2:25984106-25984125 | MS.gene67179:intron | 40.0% |
| !! | ATTGATTTGCACAGGCACTT+AGG | - | chr1.2:25982772-25982791 | MS.gene67179:intron | 40.0% |
| !! | TTGATTTGCACAGGCACTTA+GGG | - | chr1.2:25982773-25982792 | MS.gene67179:intron | 40.0% |
| ATCACATGGTCATCATGTGG+TGG | - | chr1.2:25982875-25982894 | MS.gene67179:intron | 45.0% | |
| ATGAAGCACGGATATGGACA+CGG | + | chr1.2:25983623-25983642 | None:intergenic | 45.0% | |
| CTTGGCAAGCAATGGCATAT+GGG | - | chr1.2:25984708-25984727 | MS.gene67179:CDS | 45.0% | |
| GGGAGATGGAAAGCAGTATT+AGG | - | chr1.2:25984120-25984139 | MS.gene67179:intron | 45.0% | |
| GGTGTAGCTTATCAGACAGT+TGG | - | chr1.2:25983987-25984006 | MS.gene67179:intron | 45.0% | |
| TCTTGGCAAGCAATGGCATA+TGG | - | chr1.2:25984707-25984726 | MS.gene67179:CDS | 45.0% | |
| TGCTCCCTTGAGTGTTTCTT+TGG | + | chr1.2:25983823-25983842 | None:intergenic | 45.0% | |
| ! | AAACACTCTGCTGCTTCTTG+TGG | + | chr1.2:25984961-25984980 | None:intergenic | 45.0% |
| ! | ACAAGAAGCAGCAGAGTGTT+TGG | - | chr1.2:25984960-25984979 | MS.gene67179:intron | 45.0% |
| ! | ATCATGTGGTGGAGCATGAT+TGG | - | chr1.2:25982886-25982905 | MS.gene67179:intron | 45.0% |
| ! | GTGTTTGGCTAAGGAAGCAT+TGG | - | chr1.2:25984975-25984994 | MS.gene67179:intron | 45.0% |
| !! | TGGCTAAGGAAGCATTGGTT+AGG | - | chr1.2:25984980-25984999 | MS.gene67179:intron | 45.0% |
| !! | ATAAGAAAAAAAATATTTAA+GGG | - | chr1.2:25982674-25982693 | MS.gene67179:CDS | 5.0% |
| !!! | GTTTTTTTTAAAAAATAAAT+AGG | - | chr1.2:25984843-25984862 | MS.gene67179:intron | 5.0% |
| GAGCTTGGGAGACTCTTGAA+TGG | - | chr1.2:25983146-25983165 | MS.gene67179:intron | 50.0% | |
| GAGTTGGAAGCAAGCCATCA+TGG | - | chr1.2:25982841-25982860 | MS.gene67179:intron | 50.0% | |
| TACAAAGCACGGACACTCCT+CGG | - | chr1.2:25983470-25983489 | MS.gene67179:intron | 50.0% | |
| ! | ACACTCAAGGGAGCATACCT+AGG | - | chr1.2:25983828-25983847 | MS.gene67179:intron | 50.0% |
| ! | AGCAGCAGAGTGTTTGGCTA+AGG | - | chr1.2:25984966-25984985 | MS.gene67179:intron | 50.0% |
| ACACGACACATGTCCGACAC+TGG | + | chr1.2:25983508-25983527 | None:intergenic | 55.0% | |
| ACGGATATGGACACGGACAC+CGG | + | chr1.2:25983616-25983635 | None:intergenic | 55.0% | |
| CACGACACATGTCCGACACT+GGG | + | chr1.2:25983507-25983526 | None:intergenic | 55.0% | |
| GGCAAGCAATGGCATATGGG+AGG | - | chr1.2:25984711-25984730 | MS.gene67179:CDS | 55.0% | |
| GACTAGGCGTGTCCCAGTGT+CGG | - | chr1.2:25983492-25983511 | MS.gene67179:intron | 60.0% | |
| GTCAGTGTCCGTGTCGTGTC+CGG | - | chr1.2:25983594-25983613 | MS.gene67179:CDS | 60.0% | |
| ACTGGGACACGCCTAGTCCG+AGG | + | chr1.2:25983490-25983509 | None:intergenic | 65.0% | |
| CACGGACACCGGACACGACA+CGG | + | chr1.2:25983605-25983624 | None:intergenic | 65.0% | |
| GCACGGACACTCCTCGGACT+AGG | - | chr1.2:25983476-25983495 | MS.gene67179:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 25982581 | 25985047 | 25982581 | ID=MS.gene67179 |
| chr1.2 | mRNA | 25982581 | 25985047 | 25982581 | ID=MS.gene67179.t1;Parent=MS.gene67179 |
| chr1.2 | exon | 25985015 | 25985047 | 25985015 | ID=MS.gene67179.t1.exon1;Parent=MS.gene67179.t1 |
| chr1.2 | CDS | 25985015 | 25985047 | 25985015 | ID=cds.MS.gene67179.t1;Parent=MS.gene67179.t1 |
| chr1.2 | exon | 25984558 | 25984842 | 25984558 | ID=MS.gene67179.t1.exon2;Parent=MS.gene67179.t1 |
| chr1.2 | CDS | 25984558 | 25984842 | 25984558 | ID=cds.MS.gene67179.t1;Parent=MS.gene67179.t1 |
| chr1.2 | exon | 25983569 | 25983827 | 25983569 | ID=MS.gene67179.t1.exon3;Parent=MS.gene67179.t1 |
| chr1.2 | CDS | 25983569 | 25983827 | 25983569 | ID=cds.MS.gene67179.t1;Parent=MS.gene67179.t1 |
| chr1.2 | exon | 25982896 | 25982993 | 25982896 | ID=MS.gene67179.t1.exon4;Parent=MS.gene67179.t1 |
| chr1.2 | CDS | 25982896 | 25982993 | 25982896 | ID=cds.MS.gene67179.t1;Parent=MS.gene67179.t1 |
| chr1.2 | exon | 25982581 | 25982718 | 25982581 | ID=MS.gene67179.t1.exon5;Parent=MS.gene67179.t1 |
| chr1.2 | CDS | 25982581 | 25982718 | 25982581 | ID=cds.MS.gene67179.t1;Parent=MS.gene67179.t1 |
| Gene Sequence |
| Protein sequence |
