AlfalfaGEDB | MS.gene67557

M. sativa cultivar XinJiangDaYe / MS.gene67557

KEGG: K04523
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF00240.26 PF00627.34 PF17830.4

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67557.t1	XP_024639435.1	98.9	542	6	0	1	542	1	542	1.20E-208	736.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67557.t1	Q9SII9	54.9	552	225	10	1	542	1	538	3.3e-95	350.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67557.t1	G7K016	98.9	542	6	0	1	542	1	542	8.4e-209	736.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049599	MS.gene67557	0.802682	5.00E-49	-1.69E-46
MS.gene049758	MS.gene67557	-0.815517	8.88E-52	-1.69E-46
MS.gene050319	MS.gene67557	0.813479	2.51E-51	-1.69E-46
MS.gene050330	MS.gene67557	0.837745	4.33E-57	-1.69E-46
MS.gene050558	MS.gene67557	-0.811789	5.87E-51	-1.69E-46
MS.gene05119	MS.gene67557	0.822258	2.61E-53	-1.69E-46
MS.gene052078	MS.gene67557	-0.811243	7.72E-51	-1.69E-46
MS.gene052344	MS.gene67557	0.820735	5.86E-53	-1.69E-46
MS.gene053836	MS.gene67557	-0.835314	1.80E-56	-1.69E-46
MS.gene054473	MS.gene67557	-0.825765	3.92E-54	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67557.t1	MTR_5g023830	99.631	542	2	0	1	542	1	542	0.0	1076
MS.gene67557.t1	MTR_5g023830	99.262	542	2	1	1	542	1	540	0.0	1068
MS.gene67557.t1	MTR_8g073920	73.042	549	131	9	1	542	1	539	0.0	674
MS.gene67557.t1	MTR_8g073910	39.925	531	213	14	20	542	53	485	1.80e-102	317
MS.gene67557.t1	MTR_7g451280	34.921	126	76	3	313	434	12	135	4.26e-15	72.8
MS.gene67557.t1	MTR_1g026290	35.514	107	67	2	17	123	24	128	5.07e-12	69.3
MS.gene67557.t1	MTR_1g026290	35.514	107	67	2	17	123	24	128	5.46e-12	69.3
MS.gene67557.t1	MTR_1g026290	35.514	107	67	2	17	123	24	128	6.74e-12	68.9
MS.gene67557.t1	MTR_1g026290	35.514	107	67	2	17	123	24	128	7.05e-12	68.9
MS.gene67557.t1	MTR_8g072040	48.387	62	28	1	20	81	46	103	3.38e-11	61.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67557.t1	AT2G17200	57.829	562	206	12	1	542	1	551	0.0	543
MS.gene67557.t1	AT2G17190	57.790	552	209	11	1	542	1	538	0.0	541
MS.gene67557.t1	AT5G42220	40.260	77	43	1	13	89	20	93	3.35e-12	69.7
MS.gene67557.t1	AT5G42220	40.260	77	43	1	13	89	20	93	3.35e-12	69.7

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Find 176 sgRNAs with CRISPR-Local

Find 491 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATTCGAAGAAACTCC+GGG	0.542137	5.4:-15309063	None:intergenic
AAATGACAGTTCCAGAATTT+TGG	0.122648	5.4:+15308422	MS.gene67557:CDS
AAATTGGGATTTGACATAAA+TGG	0.304375	5.4:-15308081	None:intergenic
AACAGTGAAGCTCCAAGTCC+AGG	0.510685	5.4:-15307964	None:intergenic
AACATCCTTGAAGGAAACAA+CGG	0.660672	5.4:-15306799	None:intergenic
AACATTGAATCTTCTCCTGA+GGG	0.546959	5.4:+15308330	MS.gene67557:CDS
AACGCTTGATTTATAAGGGA+AGG	0.514145	5.4:+15306856	MS.gene67557:CDS
AACGGAAAATTTGGAACCAT+TGG	0.427274	5.4:-15306757	None:intergenic
AACTAACCATTTGATCTGTT+TGG	0.313503	5.4:-15312160	None:intergenic
AATACCTGATTCATTGTTTG+AGG	0.403719	5.4:-15308900	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAACCCACTTATAAACC+TGG	-	chr5.4:15311449-15311468	None:intergenic	30.0%
AAAAACCCACTTATAAACCT+GGG	-	chr5.4:15311448-15311467	None:intergenic	30.0%
AAAATAATAAAGGGGATCTC+GGG	+	chr5.4:15310025-15310044	MS.gene67557:intron	30.0%
AAAGACTTAGCTAAGATCTT+AGG	-	chr5.4:15311147-15311166	None:intergenic	30.0%
AACTAACCATTTGATCTGTT+TGG	-	chr5.4:15312163-15312182	None:intergenic	30.0%
AAGACTTAGCTAAGATCTTA+GGG	-	chr5.4:15311146-15311165	None:intergenic	30.0%
AATACCTGATTCATTGTTTG+AGG	-	chr5.4:15308903-15308922	None:intergenic	30.0%
ACATGTATAAATGGATACGA+AGG	-	chr5.4:15311286-15311305	None:intergenic	30.0%
ACTCAAAAAGGATTTATAGC+AGG	-	chr5.4:15310657-15310676	None:intergenic	30.0%
AGATAAATTAATACTCCCTC+CGG	-	chr5.4:15307183-15307202	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.4	gene	15306678	15312416	15306678	ID=MS.gene67557
chr5.4	mRNA	15306678	15312416	15306678	ID=MS.gene67557.t1;Parent=MS.gene67557
chr5.4	exon	15306678	15306912	15306678	ID=MS.gene67557.t1.exon1;Parent=MS.gene67557.t1
chr5.4	CDS	15306678	15306912	15306678	ID=cds.MS.gene67557.t1;Parent=MS.gene67557.t1
chr5.4	exon	15307821	15308561	15307821	ID=MS.gene67557.t1.exon2;Parent=MS.gene67557.t1
chr5.4	CDS	15307821	15308561	15307821	ID=cds.MS.gene67557.t1;Parent=MS.gene67557.t1
chr5.4	exon	15308703	15308917	15308703	ID=MS.gene67557.t1.exon3;Parent=MS.gene67557.t1
chr5.4	CDS	15308703	15308917	15308703	ID=cds.MS.gene67557.t1;Parent=MS.gene67557.t1
chr5.4	exon	15308995	15309105	15308995	ID=MS.gene67557.t1.exon4;Parent=MS.gene67557.t1
chr5.4	CDS	15308995	15309105	15308995	ID=cds.MS.gene67557.t1;Parent=MS.gene67557.t1
chr5.4	exon	15309772	15309830	15309772	ID=MS.gene67557.t1.exon5;Parent=MS.gene67557.t1
chr5.4	CDS	15309772	15309830	15309772	ID=cds.MS.gene67557.t1;Parent=MS.gene67557.t1
chr5.4	exon	15310867	15310895	15310867	ID=MS.gene67557.t1.exon6;Parent=MS.gene67557.t1
chr5.4	CDS	15310867	15310895	15310867	ID=cds.MS.gene67557.t1;Parent=MS.gene67557.t1
chr5.4	exon	15312086	15312175	15312086	ID=MS.gene67557.t1.exon7;Parent=MS.gene67557.t1
chr5.4	CDS	15312086	15312175	15312086	ID=cds.MS.gene67557.t1;Parent=MS.gene67557.t1
chr5.4	exon	15312268	15312416	15312268	ID=MS.gene67557.t1.exon8;Parent=MS.gene67557.t1
chr5.4	CDS	15312268	15312416	15312268	ID=cds.MS.gene67557.t1;Parent=MS.gene67557.t1

Gene Sequence

>MS.gene67557

ATGGGAGGTGACGCAACCGCTGAAACCACCACGGAGCCACAATCCACCGACGGAGGAGTTAAGATCAACATTCGTTGTTCCAATGGTTCCAAATTTTCCGTTCAGATTAGCCTCGATTCCACCGTTGTTTCCTTCAAGGATGTTATTGCTCAGAACTGCGATATCTCTGCTGATCAACAACGCTTGATTTATAAGGGAAGGATTCTTAAGGATGATCAAACGCTTCAAAGCTATGGTATGAACCCGATCTTCCAATTATTTATATATTTGTTCGTGTTTTTCGATTCTGAGTTTTGTTCGTGATGCTTAATTTTATGTAATAATTGAAAATTAAAGATATCTTTGTGTAATTTTTTGATTGTATTGCTTTTGATTTTATCATTTTTCGTGCTTTTTGGTTTATTATACTCCCTCCGGTCCTATTTACAAGAAACAATTGACTAAACCAAATACATAAATTATTCAATGTATCTAAAAAGTCAAATGTTTCTCGTAAAAAGGACCGGAGGGAGTATTAATTTATCTCACTTATTTGAGAATGTACGATAACCTATCTAGCACCTACATCGAAGGTGTCATTTTTGACATCGACACATATGACTACATGAATTATGTTATTTTCTCAAATTATTATTGGTGTCACCATGCGGGTGACACGTTTCAGGTGTCCGTGTCTATGTTTTTATTATATAGTCTATAACTCCAGTATTTGCATTTGTATGGGTTAACAATAACATAGGATGAATTTGTCGACAATCAATGGAACGTGGAATTAGCTTTAAACACTATTTTATTTGGATATAAAGGGTGTTGTATTGTATTTTTTAGAGTGAAAATACGACGATTAAAATCATTGTTTATTTTATGCTGTCAGGAATTGATTTGTTCATATGGAAATTCTTTGGTGTTTCAGAGGGGTTAGGATCGTCTCCATTTAGGAGCATATCCATTTCTTCTATTTAGAAAGAGAGACACAAGTTTGAAGAAAATTATAAAATAATAATTAATAGTGGTGGGACCCACTATATCTCTAAATGGTATCCTCCATTTATTTTGATAAATGGAGAGGATCCTAACTTGTTTCCGAGAGTATTTAGCGAATGTGTGAATATAATTTTCTTTTGTATTTGGATTTATTTATAGGTTTGGAGGCAGATCACACTGTCCATTTGGTTCGTGGCTTTACGCCTGCCAATACAACTGGTGGGGCTAATACCACTGGTGCCAATACGACCACTACTAATGCTAGAGCTGCTGGTGCTAATGAGGGTGGGGGATTAGGAGGACCTGGACTTGGAGCTTCACTGTTTCCAGGGCTAGGAGGTATCAATGGGATGGGAGGAGGTGGTGGTCTCAATAGTTTATTTGGAGCAGGGCCTCCAGATCTTGAACAATTGCAGCAACCATTTATGTCAAATCCCAATTTAGTGAGAGAAATAATGAACTCACCTGCCATGCAAAATCTATTAAATAATCCCGAGATAGTGCGCAACCTTCTAATGAGTAACCCACAGATGCAAGAGCTTATGGATAGAAACCCTGAGCTGGCACACATACTCAATGATCCTAGCACACTTCGCCAGACACTTGAGGCTACAAGAAACCCTGAGATCATGCGTGAAATGATGAGGAATACAGACAGAGCTATGAGCAACATTGAATCTTCTCCTGAGGGGTTTAACATGCTGAGGCGCATGTATGAAAATGTTCAAGAACCATTTTTAAATGCCACCACAATGGCAGGAAATGACAGTTCCAGAATTTTGGGGACTCAAGGTGGCCAAACGAGGAATCCATCGACCAATCCCTCAACTACTAATGCTGAAGCAACTTCCCCTGTACCCAATACTAACCCACTTCCTAATCCTTGGTCATCTGCTCCAAGTAAGTATGATTTTTTTCATCATGATCAACTGATCAAGGAACTTAATGCCCCGCGGTTTATCACAATTTTCAAGTTTTTTTGATGTTTCAATTTATTTGTTATGTTCTAAAGCCTTACAAACCAAATGCTTGTTATTTTAGCTGGAGGTGCCCACACTAATGTCAGGAGATCAACACCTACTGCTGCAGATGCTTGGCAGCAGACACCCACTGGCTTAGGCGGGCTTGGTATGCCAGATCTCGAAGGCATGTTGGGTGGTATGCCAGATGCTGGTTCATTGACCCAATTAATGCAAAATCCAGCTATTTCTCAAATGATGCAAAGTATCATGTCCAATCCTCAAACAATGAATCAGGTATTTACTTAATGTGCGTATAAGTTATGTTATGCATGCTATTGAACAGATATCTCTAACGTCTTGGTTTATTTTAGATTCTTGGTATGAATACTGATCAGCGTGGGATGCCTGATATGAATTCAATGAGAGAAGTGATGCAAAACCCGGAGTTTCTTCGAATGTTTTCCTCACCCGAGACAATGCAGGTAGGCAGATTTAGAATGCTCTCGTCTGTTGATGAATTTTAGCTAATAGGCTCTCCCAATCAGTGTTGAGTACATAACAATTAACCTATTAATAAGTTTGTGGTGCAACACTGAAGCATTTAATCGTACACTCATTTTAGGAGAAAATTAATTTTTAATGTTTCTATAGATATTTTCACTTTTGTTTCTCCGGCACTGTGATAAATTGTATGAGTAATAAGGTTTTCACTGTTCAGCATTAAAAAATAGTGACTAATGACTGTAAGAGTCGGACCTAGATCTAGTGGTTGGATAGTGGCCTCCTAGCCGAGCCTTTGAAAATTAATCGACTGTGACAATTTGTGATTAAATTTTGATGAGCTTTTTGTGTTAGAAAATATGATTTTACTAATTAATGTGATCCATTGTTGTCTAATAGCAGCTATAGGATAGCAAATTATTGAATAACGGCTACCGTTCCACGATACACGATTCAGTACAAAGTGTTGTCAGATAGTTGCTATTGTATTGCTATAGCACTGTAGCTTAGCAGAATTTGAACGAAATTCTATTTTCCCGCAATCTGGGATTGACAACACCGATTTACTCTATTATGATAAAGAGTTATTGTTGTTTTGTACCTAGATATACTAAATAAATTAACTCGTGTCCTATCAACTATGGCAGCAACTCTTGTCTATGCAGCAAGCTCTTATGACTCAACTTGGACAGCAGCAATCAACACAGTAAGTAACGGAGCAGTCCTAACATTCAATCATTAATTTTTGCTAGCTTGATTGATACTTGTACTTTGATGTTCAATTGTATTGATCATATATCTTAATCATATGCTATGAAACATGGATGTGCCAAAATGGTAGGTGCTCATGTACCTTGTATCTACTGTATGCTTGGTTGGGTTTGTACAATTGTTAAAAAGAAAATAATAAAGGGGATCTCGGGATTGGATACGGCGTGATGTTTGTTGGGCATGGCTTGAGAAAAAAAATGTAGGCATTTTGGGTCCACAGATGAGAGAGTGTGAGAAGAGCTAATCCTTACCATTTGATCTCTCATGGGCGCTCTATATTTATTTAGAGCAAAACCGTTATTGATTCTTGGTCATCTATGTATATATATGGTCTAGATCCAACCAAACTCAGTTTTTTTGCTCTATTGACTCCCTCGCACATCTCTTAGGACTTGATAAAATATGAATGCCCGTGTGTAGTTGGATGAGCTTTCTTGCCTCCTCTTTTTTTGGTTATAGCTTTTTTTTGGAAATATTTGTTGTTGTAGCTTGTTTCCTTTTGCTGATCATGATTGTCAGACGCTAAAACAATTTTTTGGTTTTTGTGCAATAAAATCCTTGAAAGTGTGTGTTTTATTATCTGTCTAAGTAAAGATGTACAATTTGGGTCTGAGTCTACATTTATTATCACACTATAAGCACCTACTTAAATGTGCAAACACAGCCTAGATGGGTATGGCTCACCATAATGGCCTTTTTCTGATGACATTTGACATTTGCATGAGTTGTATTTGAACCTAGGGTTCCTTCATTCAAATCCTGCTATAAATCCTTTTTGAGTATGTGATTTGCATTGGGGTAATCCTTCTGTCATCCTAAACTTTTCTTAACCTGCCCCCAAAACAACTTCAGTGGAAATTTGCCTTGTGACTAAATAAGTAGTGAAGTTTGAATTTTGATGCTCTTTTTGATTTTATTTTGTTTACTATTTGCTACTGGCTGGGTCATCTAAAATGATGCGCTTTGTGCAGGGAACCAGGTCAAACAGGTGGAGGCACTGGTATGCAAGACAATTTTGCATTCATTTATGGTTTCTGTATATAGAACTATGCTCTGTTAGTCTGTTTGGAATATTTCAGCACTTCACTTCAAATTCCTTGACCATCTCTTAAGATCACCAATCTAAATTTGAATTATTGTGAATTATAACGTTTTGGATCAATGGAACATTTAATAATGTGTTTGTGTATCCTCTTCTACATGCTCTCTGCATCTTTACGTTGAAAATTTGTCTACTATGAGGTTTTCCCTAAGATCTTAGCTAAGTCTTTTATTAGGTGGATGATAAATCATATAGGTTGATCTGGGTGTTTAAGTTATGTGGCCCTTGAGGTAGGGCAGTGCCTTAAACCGTTTCTAACCAAATTTAAGCTGTGCCTAACTGAATCCTTCGTATCCATTTATACATGTGAAACCATTTACATGGCCAACCAAAGGGCATGGGCAATAAAGCCGAAGCTTTAGGCCAATAAAGTCAAAGCTTTAGGCCTCCTCTTATGCAAGGCTTCAATTTTTATTTCATGTTAGTATGTTATACATGTAGAGGCTGCCCAGGTTTATAAGTGGGTTTTTTCTTCTTCATAAAAAAGACCCTTCATCTCCTCTTCTACTAAGGCCTCAATTATATTTGAATGATGTATTTATAAGGTGGTCCAAGTAACCCTTCATCTCCTCCTTCATATGACTTGATCTACTGAAAATATGCCTGCCATCTTTTTTTAGGGTTTACTTTCATGAGGTGTGGGTGCCATCTCTATTTCTTTTTGCCTGACTGGTCCCATCCCTCTATTTCTTTTTGCCCTTGCCTCTCATTCGCCATTTCAGATATGCCTGACTGGTCCCATCCCTCTATTTCTTTTTGCCCTTGCCTCTCATTCGCCATTTCAGATATTCCTGTTGGCGGTGCCATTATAATGGCAACCGCCATACCCCGCCATGAATACCACATATACAGTAGCTTACCTAATACCCAAATACTGTGCTGCATGTTGCCACCAATACTGTTTTTTTTTTTTTTAACACTGATATTGAGTCAGCCTTGCTTTTGAAGGTCCCATGCATCTATAGAATAGCAATGACGGGGGAGGTTTTTAAGGGGGCAGCTGGATGATGCAATTGCCATTGGTTGCACATTAAAAAATTATAATAATTTTTTTTTTTGTAATTGCTTAAATTTGTTTCTGTTAGTAGGACCAGTGAACAACTTGGGGTTGGAGATGTTATCGAGCATGTTTGGTGGACTTGGAGCTGGTAGCCTAGCTGTTCCAAACAGATCAAATGGTTAGTTAGGATTGCTATTGTTTTTGTAATTTTCTACCTGCATTACTATTCTAAATAATTTTTATACCGATCTCTCCTCGATGTCTTCCCAGAGCCTCCAGAGACATTGTATGCTACCCAGCTTACCCAGCTTCAAGAGATGGGATTCTTTGACACGCAAGAGAACTTAAGGGCTCTTATTGCTACATCAGGGAATGTTCATGCAGCGGTTGAGCGACTTTTGGGAAACTCTGGACAGTAG

Protein sequence

>MS.gene67557.t1

MGGDATAETTTEPQSTDGGVKINIRCSNGSKFSVQISLDSTVVSFKDVIAQNCDISADQQRLIYKGRILKDDQTLQSYGLEADHTVHLVRGFTPANTTGGANTTGANTTTTNARAAGANEGGGLGGPGLGASLFPGLGGINGMGGGGGLNSLFGAGPPDLEQLQQPFMSNPNLVREIMNSPAMQNLLNNPEIVRNLLMSNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNDSSRILGTQGGQTRNPSTNPSTTNAEATSPVPNTNPLPNPWSSAPTGGAHTNVRRSTPTAADAWQQTPTGLGGLGMPDLEGMLGGMPDAGSLTQLMQNPAISQMMQSIMSNPQTMNQILGMNTDQRGMPDMNSMREVMQNPEFLRMFSSPETMQQLLSMQQALMTQLGQQQSTQEPGQTGGGTGPVNNLGLEMLSSMFGGLGAGSLAVPNRSNEPPETLYATQLTQLQEMGFFDTQENLRALIATSGNVHAAVERLLGNSGQ