Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68064.t1 | XP_003612174.1 | 97.5 | 522 | 13 | 0 | 31 | 552 | 26 | 547 | 8.10E-290 | 1005.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68064.t1 | O04472 | 64.1 | 529 | 180 | 3 | 31 | 551 | 14 | 540 | 1.1e-202 | 707.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68064.t1 | G7JW84 | 97.5 | 522 | 13 | 0 | 31 | 552 | 26 | 547 | 5.8e-290 | 1005.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene022275 | MS.gene68064 | PPI |
| MS.gene56947 | MS.gene68064 | PPI |
| MS.gene86930 | MS.gene68064 | PPI |
| MS.gene70604 | MS.gene68064 | PPI |
| MS.gene074377 | MS.gene68064 | PPI |
| MS.gene25932 | MS.gene68064 | PPI |
| MS.gene68064 | MS.gene91317 | PPI |
| MS.gene033221 | MS.gene68064 | PPI |
| MS.gene68064 | MS.gene96701 | PPI |
| MS.gene71606 | MS.gene68064 | PPI |
| MS.gene68064 | MS.gene43290 | PPI |
| MS.gene60344 | MS.gene68064 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68064.t1 | MTR_5g022110 | 96.196 | 552 | 16 | 1 | 1 | 552 | 1 | 547 | 0.0 | 1082 |
| MS.gene68064.t1 | MTR_3g103230 | 76.938 | 529 | 122 | 0 | 24 | 552 | 26 | 554 | 0.0 | 864 |
| MS.gene68064.t1 | MTR_8g063220 | 59.176 | 534 | 209 | 3 | 26 | 552 | 2 | 533 | 0.0 | 665 |
| MS.gene68064.t1 | MTR_3g078270 | 58.256 | 539 | 213 | 2 | 17 | 552 | 3 | 532 | 0.0 | 658 |
| MS.gene68064.t1 | MTR_4g106750 | 57.250 | 531 | 223 | 2 | 26 | 552 | 2 | 532 | 0.0 | 640 |
| MS.gene68064.t1 | MTR_5g035180 | 56.564 | 518 | 221 | 2 | 39 | 552 | 21 | 538 | 0.0 | 625 |
| MS.gene68064.t1 | MTR_1g106085 | 55.577 | 529 | 227 | 4 | 26 | 551 | 3 | 526 | 0.0 | 592 |
| MS.gene68064.t1 | MTR_4g106750 | 57.469 | 482 | 202 | 1 | 74 | 552 | 2 | 483 | 0.0 | 578 |
| MS.gene68064.t1 | MTR_2g016460 | 52.672 | 524 | 238 | 4 | 31 | 550 | 5 | 522 | 0.0 | 568 |
| MS.gene68064.t1 | MTR_8g086520 | 52.390 | 523 | 241 | 4 | 31 | 550 | 5 | 522 | 0.0 | 568 |
| MS.gene68064.t1 | MTR_3g080390 | 51.938 | 516 | 240 | 4 | 40 | 550 | 6 | 518 | 0.0 | 548 |
| MS.gene68064.t1 | MTR_8g086520 | 54.566 | 438 | 196 | 1 | 31 | 468 | 5 | 439 | 3.01e-176 | 506 |
| MS.gene68064.t1 | MTR_1g021120 | 51.068 | 515 | 239 | 5 | 44 | 551 | 38 | 546 | 7.03e-175 | 505 |
| MS.gene68064.t1 | MTR_8g086520 | 54.386 | 399 | 179 | 1 | 31 | 429 | 5 | 400 | 7.06e-159 | 459 |
| MS.gene68064.t1 | MTR_4g106750 | 57.568 | 370 | 154 | 1 | 186 | 552 | 11 | 380 | 1.82e-152 | 442 |
| MS.gene68064.t1 | MTR_8g086520 | 52.854 | 403 | 185 | 3 | 151 | 550 | 6 | 406 | 9.77e-150 | 436 |
| MS.gene68064.t1 | MTR_8g068550 | 31.777 | 557 | 336 | 6 | 31 | 549 | 205 | 755 | 8.09e-90 | 292 |
| MS.gene68064.t1 | MTR_5g032020 | 34.615 | 520 | 289 | 5 | 66 | 545 | 185 | 693 | 1.49e-89 | 290 |
| MS.gene68064.t1 | MTR_2g084895 | 32.500 | 560 | 329 | 7 | 33 | 549 | 125 | 678 | 2.69e-88 | 286 |
| MS.gene68064.t1 | MTR_2g103510 | 30.139 | 574 | 337 | 10 | 7 | 549 | 51 | 591 | 9.49e-84 | 272 |
| MS.gene68064.t1 | MTR_4g055290 | 32.008 | 528 | 301 | 7 | 64 | 549 | 169 | 680 | 2.89e-80 | 265 |
| MS.gene68064.t1 | MTR_8g086535 | 56.034 | 116 | 50 | 1 | 315 | 429 | 1 | 116 | 8.33e-34 | 124 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68064.t1 | AT1G65550 | 64.151 | 530 | 178 | 4 | 31 | 551 | 14 | 540 | 0.0 | 737 |
| MS.gene68064.t1 | AT5G62890 | 58.569 | 531 | 216 | 2 | 26 | 552 | 2 | 532 | 0.0 | 649 |
| MS.gene68064.t1 | AT5G62890 | 58.569 | 531 | 216 | 2 | 26 | 552 | 2 | 532 | 0.0 | 649 |
| MS.gene68064.t1 | AT5G62890 | 58.569 | 531 | 216 | 2 | 26 | 552 | 2 | 532 | 0.0 | 649 |
| MS.gene68064.t1 | AT1G60030 | 58.414 | 517 | 212 | 1 | 39 | 552 | 22 | 538 | 0.0 | 645 |
| MS.gene68064.t1 | AT1G10540 | 55.844 | 539 | 230 | 4 | 19 | 551 | 2 | 538 | 0.0 | 616 |
| MS.gene68064.t1 | AT5G49990 | 57.115 | 520 | 220 | 1 | 36 | 552 | 9 | 528 | 0.0 | 598 |
| MS.gene68064.t1 | AT5G49990 | 57.115 | 520 | 220 | 1 | 36 | 552 | 9 | 528 | 0.0 | 598 |
| MS.gene68064.t1 | AT5G49990 | 57.115 | 520 | 220 | 1 | 36 | 552 | 9 | 528 | 0.0 | 598 |
| MS.gene68064.t1 | AT5G49990 | 57.115 | 520 | 220 | 1 | 36 | 552 | 9 | 528 | 0.0 | 598 |
| MS.gene68064.t1 | AT1G49960 | 55.492 | 528 | 226 | 3 | 29 | 551 | 2 | 525 | 0.0 | 588 |
| MS.gene68064.t1 | AT5G62890 | 61.830 | 448 | 170 | 1 | 26 | 472 | 2 | 449 | 0.0 | 580 |
| MS.gene68064.t1 | AT2G34190 | 51.527 | 524 | 246 | 4 | 30 | 550 | 4 | 522 | 0.0 | 559 |
| MS.gene68064.t1 | AT2G05760 | 51.550 | 516 | 242 | 4 | 40 | 550 | 6 | 518 | 0.0 | 545 |
| MS.gene68064.t1 | AT2G26510 | 49.031 | 516 | 253 | 3 | 41 | 550 | 36 | 547 | 2.57e-170 | 494 |
| MS.gene68064.t1 | AT5G25420 | 56.136 | 440 | 123 | 4 | 31 | 470 | 26 | 395 | 4.10e-170 | 488 |
| MS.gene68064.t1 | AT1G10540 | 57.326 | 389 | 161 | 3 | 19 | 404 | 2 | 388 | 1.78e-157 | 455 |
| MS.gene68064.t1 | AT2G26510 | 49.725 | 364 | 183 | 0 | 41 | 404 | 36 | 399 | 1.33e-120 | 362 |
| MS.gene68064.t1 | AT2G26510 | 49.003 | 351 | 179 | 0 | 41 | 391 | 36 | 386 | 3.36e-113 | 343 |
| MS.gene68064.t1 | AT2G27810 | 29.452 | 584 | 374 | 5 | 3 | 549 | 119 | 701 | 4.30e-79 | 263 |
| MS.gene68064.t1 | AT4G38050 | 31.720 | 558 | 311 | 8 | 39 | 549 | 170 | 704 | 5.01e-78 | 260 |
| MS.gene68064.t1 | AT2G27810 | 32.582 | 488 | 306 | 3 | 3 | 468 | 119 | 605 | 6.72e-78 | 260 |
| MS.gene68064.t1 | AT2G27810 | 31.992 | 472 | 298 | 3 | 3 | 452 | 119 | 589 | 8.80e-72 | 240 |
| MS.gene68064.t1 | AT2G27810 | 32.235 | 425 | 265 | 3 | 3 | 405 | 119 | 542 | 1.42e-61 | 212 |
Find 121 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCATTGAAACAGGAAAATT+TGG | 0.125795 | 5.3:+12901777 | MS.gene68064:intron |
| TGCATTGGTTGCATTAATTT+TGG | 0.216559 | 5.3:+12902785 | MS.gene68064:CDS |
| CTAGGCTTCTCATTCTTCTT+AGG | 0.228918 | 5.3:+12902550 | MS.gene68064:CDS |
| CTTGCGAAATGCGTTGAAAT+TGG | 0.244279 | 5.3:+12900396 | MS.gene68064:CDS |
| ACTTCCTGCTTTAATTGTTA+TGG | 0.257766 | 5.3:+12900419 | MS.gene68064:CDS |
| TGAGAAGCCTAGCACAAATT+TGG | 0.262002 | 5.3:-12902539 | None:intergenic |
| ACCACCTTCATTGGCAGCTT+TGG | 0.293558 | 5.3:-12899190 | None:intergenic |
| AAGTCCTACTTTCAATGTTT+TGG | 0.295517 | 5.3:+12900959 | MS.gene68064:CDS |
| ACCTATAATTTCTATTGTTC+AGG | 0.295647 | 5.3:+12899916 | MS.gene68064:CDS |
| TCAAGTTTCCAAATGGCTAT+TGG | 0.296920 | 5.3:+12900097 | MS.gene68064:CDS |
| GGCATGTTTGGTTGTGTAAC+TGG | 0.299241 | 5.3:+12901334 | MS.gene68064:CDS |
| AACTATAATTGTTCCTCAAA+TGG | 0.310349 | 5.3:+12899670 | MS.gene68064:CDS |
| TGCAGGTCAAGCAGTGATAT+TGG | 0.311608 | 5.3:+12899601 | MS.gene68064:intron |
| ATAGTTTCATTTACCTCATA+AGG | 0.311803 | 5.3:-12899965 | None:intergenic |
| GCATTATATTGTATATTATT+CGG | 0.323236 | 5.3:+12901837 | MS.gene68064:CDS |
| TCCTATGCTGCTGCAAGATA+TGG | 0.340951 | 5.3:+12901129 | MS.gene68064:CDS |
| AAAATGACAGTGGTTTAAAA+TGG | 0.346990 | 5.3:+12902841 | MS.gene68064:CDS |
| GCCTGAACAATAGAAATTAT+AGG | 0.356271 | 5.3:-12899917 | None:intergenic |
| TCTTTCACTGGCTGTGGTGC+TGG | 0.357369 | 5.3:-12899270 | None:intergenic |
| GGAGTAGGTGCTTTGTTTAG+TGG | 0.360576 | 5.3:+12901313 | MS.gene68064:CDS |
| TTAATGCAATATTGAATTCC+AGG | 0.362670 | 5.3:-12899300 | None:intergenic |
| TATGTAGCTTCTGCTGGTCT+TGG | 0.364528 | 5.3:+12902481 | MS.gene68064:intron |
| CGATTGCCAATTGTAGTTGT+TGG | 0.376597 | 5.3:+12899875 | MS.gene68064:CDS |
| GCCTCCACCACCACCTTCAT+TGG | 0.391683 | 5.3:-12899199 | None:intergenic |
| TGACAAAACATGGCTCAAAA+TGG | 0.404370 | 5.3:+12899153 | None:intergenic |
| TATGAACCAACAACTACAAT+TGG | 0.405084 | 5.3:-12899881 | None:intergenic |
| CCTTGTATAATGGAGATGTT+AGG | 0.407646 | 5.3:+12902877 | MS.gene68064:CDS |
| CAATATAATGCTGCTATGAT+TGG | 0.408090 | 5.3:-12901825 | None:intergenic |
| CAGCATTACCTTCTAACTCT+TGG | 0.411328 | 5.3:+12899629 | MS.gene68064:CDS |
| TATCAGCCGCGGAGCTGGTT+GGG | 0.413972 | 5.3:+12901179 | MS.gene68064:CDS |
| AATATATAGCTTACCCATCT+AGG | 0.414115 | 5.3:-12902631 | None:intergenic |
| GCTTTGTTTAGTGGCATGTT+TGG | 0.416996 | 5.3:+12901322 | MS.gene68064:CDS |
| AGGTGTTATGATCTCTTAAA+GGG | 0.417215 | 5.3:-12902949 | None:intergenic |
| ATGAACAAGAAAGTCCTAGA+TGG | 0.420567 | 5.3:+12902617 | MS.gene68064:CDS |
| GAGAAGTTCACCTTGTATAA+TGG | 0.421075 | 5.3:+12902867 | MS.gene68064:CDS |
| TCTATTATCAGCCGCGGAGC+TGG | 0.422496 | 5.3:+12901174 | MS.gene68064:CDS |
| ATTTGAGGAACAATTATAGT+TGG | 0.426537 | 5.3:-12899668 | None:intergenic |
| GAAGGTGGTGGTGGAGGCGG+CGG | 0.426596 | 5.3:+12899204 | MS.gene68064:CDS |
| ACATTTCTTCAATCTTTGTT+CGG | 0.429936 | 5.3:+12899848 | MS.gene68064:CDS |
| GCAGGTCAAGCAGTGATATT+GGG | 0.430172 | 5.3:+12899602 | MS.gene68064:intron |
| CAGACACTTCTGTTTGTGTC+TGG | 0.433279 | 5.3:+12899818 | MS.gene68064:CDS |
| AACTGTTGAGGTTACAGAAC+TGG | 0.434392 | 5.3:-12902510 | None:intergenic |
| CAATGTAGGCTGAGAAGACT+AGG | 0.435755 | 5.3:+12899789 | MS.gene68064:intron |
| TTACTAGCATTAACAAAAGT+AGG | 0.438242 | 5.3:+12901504 | MS.gene68064:CDS |
| AGCGCGATCAGTTCGGCAAC+TGG | 0.440761 | 5.3:-12900742 | None:intergenic |
| AATGAAGGTGGTGGTGGAGG+CGG | 0.442126 | 5.3:+12899201 | MS.gene68064:CDS |
| CTTACCATGGAGCGGTGGTT+AGG | 0.443759 | 5.3:-12900770 | None:intergenic |
| ACATCTCCTCCACCCATTTG+AGG | 0.445664 | 5.3:-12899683 | None:intergenic |
| CCAGGTAATTGCTCTTTCAC+TGG | 0.449256 | 5.3:-12899282 | None:intergenic |
| ACTATAATTGTTCCTCAAAT+GGG | 0.450386 | 5.3:+12899671 | MS.gene68064:CDS |
| TTATCAGCCGCGGAGCTGGT+TGG | 0.454021 | 5.3:+12901178 | MS.gene68064:CDS |
| CTGTAATGCCAAGAGTTAGA+AGG | 0.457456 | 5.3:-12899637 | None:intergenic |
| GCTCCGCGGCTGATAATAGA+AGG | 0.458220 | 5.3:-12901171 | None:intergenic |
| TATTTACTGTCACAATTACA+TGG | 0.459016 | 5.3:+12900658 | MS.gene68064:CDS |
| GCCAATGAAGGTGGTGGTGG+AGG | 0.466316 | 5.3:+12899198 | MS.gene68064:CDS |
| GTTCCATATGTAACTTTCGC+TGG | 0.467362 | 5.3:+12900255 | MS.gene68064:CDS |
| AGAGTAATTCAAATTTCAGC+TGG | 0.468569 | 5.3:+12901534 | MS.gene68064:CDS |
| TGGAACTATGTAGCTTCTGC+TGG | 0.469454 | 5.3:+12902475 | MS.gene68064:intron |
| CATAAGTTCAAGTTTCCAAA+TGG | 0.478916 | 5.3:+12900090 | MS.gene68064:CDS |
| TTATGATCTCTTAAAGGGCT+GGG | 0.481196 | 5.3:-12902944 | None:intergenic |
| ACATATAACTGTTGCTGCAT+TGG | 0.483909 | 5.3:+12902770 | MS.gene68064:CDS |
| GTTATGATCTCTTAAAGGGC+TGG | 0.486418 | 5.3:-12902945 | None:intergenic |
| TATGTAACTTTCGCTGGACT+CGG | 0.490704 | 5.3:+12900261 | MS.gene68064:CDS |
| ATGACAGTGGTTTAAAATGG+TGG | 0.494146 | 5.3:+12902844 | MS.gene68064:CDS |
| CCAGTGAAAGAGCAATTACC+TGG | 0.496122 | 5.3:+12899282 | MS.gene68064:CDS |
| ACATATGGAACTACAGATAG+TGG | 0.498392 | 5.3:-12900243 | None:intergenic |
| AATTGCTCTTTCACTGGCTG+TGG | 0.501886 | 5.3:-12899276 | None:intergenic |
| GGATTCCAGCGCGATCAGTT+CGG | 0.507110 | 5.3:-12900749 | None:intergenic |
| TCGGTCATTTATAGACTTCA+CGG | 0.508851 | 5.3:-12900625 | None:intergenic |
| AGTCCAGCGAAAGTTACATA+TGG | 0.513298 | 5.3:-12900258 | None:intergenic |
| AATGCTGCTATGATTGGTAA+AGG | 0.516664 | 5.3:-12901819 | None:intergenic |
| CTGATAATAGAAGGCGGCAC+CGG | 0.517220 | 5.3:-12901162 | None:intergenic |
| ATGACAATGAGAGGGATTCA+AGG | 0.519356 | 5.3:+12900058 | MS.gene68064:CDS |
| GTGTACTAACGCCATGGAGG+TGG | 0.522538 | 5.3:-12899327 | None:intergenic |
| CAGTAAATAGCACTGCAAAT+CGG | 0.524244 | 5.3:-12900644 | None:intergenic |
| TAGGACTTCCCCATTGGAAA+GGG | 0.527990 | 5.3:-12900944 | None:intergenic |
| CTTCCCCATTGGAAAGGGTA+AGG | 0.533419 | 5.3:-12900939 | None:intergenic |
| TGAAAGTAGGACTTCCCCAT+TGG | 0.535521 | 5.3:-12900950 | None:intergenic |
| TGAATATACAGATCCTTATG+AGG | 0.535943 | 5.3:+12899952 | MS.gene68064:CDS |
| GCTGCCAATGAAGGTGGTGG+TGG | 0.538131 | 5.3:+12899195 | MS.gene68064:CDS |
| TCTTCCTGCAGTATCTTCAT+CGG | 0.544295 | 5.3:+12900592 | MS.gene68064:intron |
| CCTAACATCTCCATTATACA+AGG | 0.547749 | 5.3:-12902877 | None:intergenic |
| TGACAGTGGTTTAAAATGGT+GGG | 0.549048 | 5.3:+12902845 | MS.gene68064:CDS |
| GCTTCCAAAACATTGAAAGT+AGG | 0.550456 | 5.3:-12900963 | None:intergenic |
| TTCAGAACCAAATTTGTGCT+AGG | 0.556517 | 5.3:+12902532 | MS.gene68064:CDS |
| ATTTGGTTCTGAAACTGTTG+AGG | 0.556795 | 5.3:-12902522 | None:intergenic |
| TGAACAAGAAAGTCCTAGAT+GGG | 0.558213 | 5.3:+12902618 | MS.gene68064:CDS |
| AAAAGCTCATTGAGTTTGCA+AGG | 0.560179 | 5.3:-12902921 | None:intergenic |
| TCCATATCTTGCAGCAGCAT+AGG | 0.561582 | 5.3:-12901130 | None:intergenic |
| GACACCAAAGCTGCCAATGA+AGG | 0.570835 | 5.3:+12899186 | MS.gene68064:CDS |
| GGACTCGGTCTCTATCAACT+TGG | 0.572049 | 5.3:+12900276 | MS.gene68064:CDS |
| AAAACCATAACAATTAAAGC+AGG | 0.572903 | 5.3:-12900423 | None:intergenic |
| TGACTTGTTGTTATATGCAG+TGG | 0.579646 | 5.3:-12900706 | None:intergenic |
| GAATCCTAACCACCGCTCCA+TGG | 0.579654 | 5.3:+12900766 | MS.gene68064:CDS |
| CTATCAACTTGGTTTCCCAA+TGG | 0.581145 | 5.3:+12900287 | MS.gene68064:CDS |
| TTGTGAGAAATATTGTGGTA+TGG | 0.582535 | 5.3:-12902578 | None:intergenic |
| GTAGGACTTCCCCATTGGAA+AGG | 0.582640 | 5.3:-12900945 | None:intergenic |
| GAACTACAGATAGTGGACTA+AGG | 0.587103 | 5.3:-12900236 | None:intergenic |
| ATTGTTCCTCAAATGGGTGG+AGG | 0.596097 | 5.3:+12899677 | MS.gene68064:CDS |
| GCATTAACAGTCCACCTCCA+TGG | 0.596854 | 5.3:+12899316 | MS.gene68064:CDS |
| AACATGGCTCAAAATGGAGG+TGG | 0.597871 | 5.3:+12899159 | None:intergenic |
| AGGTTTACTATGACAATGAG+AGG | 0.600380 | 5.3:+12900049 | MS.gene68064:CDS |
| AGTTGCCGAACTGATCGCGC+TGG | 0.602623 | 5.3:+12900744 | MS.gene68064:CDS |
| GGTTTACTATGACAATGAGA+GGG | 0.606294 | 5.3:+12900050 | MS.gene68064:CDS |
| AAATATTGTGAGAAATATTG+TGG | 0.606956 | 5.3:-12902583 | None:intergenic |
| ATAATTGTTCCTCAAATGGG+TGG | 0.610258 | 5.3:+12899674 | MS.gene68064:CDS |
| CAGCCGCGGAGCTGGTTGGG+TGG | 0.617485 | 5.3:+12901182 | MS.gene68064:CDS |
| CCGCCTTCTATTATCAGCCG+CGG | 0.618383 | 5.3:+12901168 | MS.gene68064:CDS |
| CAAAACATGGCTCAAAATGG+AGG | 0.619091 | 5.3:+12899156 | None:intergenic |
| AATAGAAGGCGGCACCGGCG+TGG | 0.625499 | 5.3:-12901157 | None:intergenic |
| AATGTAGGCTGAGAAGACTA+GGG | 0.641878 | 5.3:+12899790 | MS.gene68064:intron |
| TTAATCTTACCATGGAGCGG+TGG | 0.643744 | 5.3:-12900775 | None:intergenic |
| AACTTAATCTTACCATGGAG+CGG | 0.649594 | 5.3:-12900778 | None:intergenic |
| AAGATATGGAAGTGCCACGC+CGG | 0.655847 | 5.3:+12901143 | MS.gene68064:CDS |
| TTTCCTTACCCTTTCCAATG+GGG | 0.665262 | 5.3:+12900936 | MS.gene68064:CDS |
| AAAGCTGCCAATGAAGGTGG+TGG | 0.665648 | 5.3:+12899192 | MS.gene68064:CDS |
| CCGCGGCTGATAATAGAAGG+CGG | 0.690209 | 5.3:-12901168 | None:intergenic |
| ACCAAAGCTGCCAATGAAGG+TGG | 0.697056 | 5.3:+12899189 | MS.gene68064:CDS |
| ATACCACCCAACCAGCTCCG+CGG | 0.707287 | 5.3:-12901185 | None:intergenic |
| TAGGTGTACTAACGCCATGG+AGG | 0.753213 | 5.3:-12899330 | None:intergenic |
| GTCATTTATAGACTTCACGG+CGG | 0.795155 | 5.3:-12900622 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACATAAATTAAGTTAAAAAT+AGG | + | chr5.3:12902268-12902287 | MS.gene68064:intron | 10.0% |
| !! | CATAAATTAAGTTAAAAATA+GGG | + | chr5.3:12902269-12902288 | MS.gene68064:intron | 10.0% |
| !!! | TATAATATTTTGAATTTTTC+TGG | - | chr5.3:12902070-12902089 | None:intergenic | 10.0% |
| !! | CACATAGATTATTATTATTA+GGG | - | chr5.3:12902403-12902422 | None:intergenic | 15.0% |
| !! | CATGCTAATAATAATAATAA+GGG | + | chr5.3:12901883-12901902 | MS.gene68064:intron | 15.0% |
| !! | GAAATTAGTACAAATAATAT+TGG | - | chr5.3:12901598-12901617 | None:intergenic | 15.0% |
| !! | GCATTATATTGTATATTATT+CGG | + | chr5.3:12901837-12901856 | MS.gene68064:CDS | 15.0% |
| !! | TCATGCTAATAATAATAATA+AGG | + | chr5.3:12901882-12901901 | MS.gene68064:intron | 15.0% |
| !!! | AAATTCTAAAACAGAATAAT+GGG | + | chr5.3:12900513-12900532 | MS.gene68064:intron | 15.0% |
| !!! | CTTAACAATATTTGTTAATT+TGG | + | chr5.3:12902455-12902474 | MS.gene68064:intron | 15.0% |
| !!! | TAAATTCTAAAACAGAATAA+TGG | + | chr5.3:12900512-12900531 | MS.gene68064:intron | 15.0% |
| !!! | TAGTGATTGAAAATTTTATA+GGG | + | chr5.3:12902300-12902319 | MS.gene68064:intron | 15.0% |
| !!! | TGAAGATTGAAAATTTTATA+GGG | - | chr5.3:12901986-12902005 | None:intergenic | 15.0% |
| !! | AAAATGATTTGATTCAATGT+AGG | + | chr5.3:12899775-12899794 | MS.gene68064:intron | 20.0% |
| !! | AAATATTGTGAGAAATATTG+TGG | - | chr5.3:12902586-12902605 | None:intergenic | 20.0% |
| !! | GAAAAGTTGACATATTTATA+GGG | + | chr5.3:12902360-12902379 | MS.gene68064:intron | 20.0% |
| !! | GAAAAGTTGTCATATTTATA+GGG | - | chr5.3:12901926-12901945 | None:intergenic | 20.0% |
| !! | GCACATAGATTATTATTATT+AGG | - | chr5.3:12902404-12902423 | None:intergenic | 20.0% |
| !! | TAAGAAGCAAAAAATCAAAA+GGG | - | chr5.3:12900340-12900359 | None:intergenic | 20.0% |
| !! | TAGTAACTATAAGTTAAGAT+AGG | - | chr5.3:12899352-12899371 | None:intergenic | 20.0% |
| !! | TGAGTAATATAATGACTAAA+AGG | - | chr5.3:12901071-12901090 | None:intergenic | 20.0% |
| !! | TTAAGAAGCAAAAAATCAAA+AGG | - | chr5.3:12900341-12900360 | None:intergenic | 20.0% |
| !!! | AAATTTTCAATCACTACTTT+TGG | - | chr5.3:12902296-12902315 | None:intergenic | 20.0% |
| !!! | AAATTTTCAATCTTCACTTT+TGG | + | chr5.3:12901990-12902009 | MS.gene68064:intron | 20.0% |
| !!! | AACTCTAATTAATTTTGCTA+AGG | - | chr5.3:12901043-12901062 | None:intergenic | 20.0% |
| !!! | ATAAGGGTTAAATATGTTTT+TGG | + | chr5.3:12901899-12901918 | MS.gene68064:intron | 20.0% |
| !!! | ATATGAGTTTACTTTAAAAG+AGG | - | chr5.3:12902018-12902037 | None:intergenic | 20.0% |
| !!! | ATTAGGGTTAAATATGTTTT+TGG | - | chr5.3:12902387-12902406 | None:intergenic | 20.0% |
| !!! | GTAGTGATTGAAAATTTTAT+AGG | + | chr5.3:12902299-12902318 | MS.gene68064:intron | 20.0% |
| !!! | GTGAAGATTGAAAATTTTAT+AGG | - | chr5.3:12901987-12902006 | None:intergenic | 20.0% |
| !!! | TAATTTTGCTAAGGATTTAA+GGG | - | chr5.3:12901034-12901053 | None:intergenic | 20.0% |
| !!! | TATGAGTTTACTTTAAAAGA+GGG | - | chr5.3:12902017-12902036 | None:intergenic | 20.0% |
| !!! | TCATTCTTGTTTTGATTTTA+GGG | + | chr5.3:12901292-12901311 | MS.gene68064:intron | 20.0% |
| !!! | TTAATTTTGCTAAGGATTTA+AGG | - | chr5.3:12901035-12901054 | None:intergenic | 20.0% |
| !!! | TTCGATTTTTATGTAAATCT+TGG | + | chr5.3:12900174-12900193 | MS.gene68064:intron | 20.0% |
| !!! | TTTTAGTCATTATATTACTC+AGG | + | chr5.3:12901070-12901089 | MS.gene68064:intron | 20.0% |
| ! | AAAAAAAGAGTAAAGCAGAA+AGG | - | chr5.3:12901467-12901486 | None:intergenic | 25.0% |
| ! | AAAACCATAACAATTAAAGC+AGG | - | chr5.3:12900426-12900445 | None:intergenic | 25.0% |
| ! | AAAATGACAGTGGTTTAAAA+TGG | + | chr5.3:12902841-12902860 | MS.gene68064:CDS | 25.0% |
| ! | AACTATAATTGTTCCTCAAA+TGG | + | chr5.3:12899670-12899689 | MS.gene68064:CDS | 25.0% |
| ! | ACATTTCTTCAATCTTTGTT+CGG | + | chr5.3:12899848-12899867 | MS.gene68064:CDS | 25.0% |
| ! | ACCTATAATTTCTATTGTTC+AGG | + | chr5.3:12899916-12899935 | MS.gene68064:CDS | 25.0% |
| ! | ACTATAATTGTTCCTCAAAT+GGG | + | chr5.3:12899671-12899690 | MS.gene68064:CDS | 25.0% |
| ! | ATAGTTTCATTTACCTCATA+AGG | - | chr5.3:12899968-12899987 | None:intergenic | 25.0% |
| ! | ATTTCATAATTTCAGCATCT+TGG | + | chr5.3:12901613-12901632 | MS.gene68064:intron | 25.0% |
| ! | ATTTGAGGAACAATTATAGT+TGG | - | chr5.3:12899671-12899690 | None:intergenic | 25.0% |
| ! | CGAAAAGTTGACATATTTAT+AGG | + | chr5.3:12902359-12902378 | MS.gene68064:intron | 25.0% |
| ! | CGAAAAGTTGTCATATTTAT+AGG | - | chr5.3:12901927-12901946 | None:intergenic | 25.0% |
| ! | TATGAAACTTAATCTTACCA+TGG | - | chr5.3:12900786-12900805 | None:intergenic | 25.0% |
| ! | TATTTACTGTCACAATTACA+TGG | + | chr5.3:12900658-12900677 | MS.gene68064:CDS | 25.0% |
| ! | TTAATGCAATATTGAATTCC+AGG | - | chr5.3:12899303-12899322 | None:intergenic | 25.0% |
| ! | TTACAAGTTCCAACAAATTA+AGG | - | chr5.3:12899389-12899408 | None:intergenic | 25.0% |
| ! | TTACTAGCATTAACAAAAGT+AGG | + | chr5.3:12901504-12901523 | MS.gene68064:CDS | 25.0% |
| !! | AAGTTGAAGGAAAATTTTAG+AGG | + | chr5.3:12902328-12902347 | MS.gene68064:intron | 25.0% |
| !! | AGTTGAAGGAAAATTTTAGA+GGG | + | chr5.3:12902329-12902348 | MS.gene68064:intron | 25.0% |
| !! | ATGATTTTCTTCTCTGTATT+TGG | + | chr5.3:12901561-12901580 | MS.gene68064:CDS | 25.0% |
| !! | ATTTTTGCTTAAGATAGTAC+TGG | + | chr5.3:12899548-12899567 | MS.gene68064:intron | 25.0% |
| !!! | CTATTGGATTTTTTGGTTTT+TGG | + | chr5.3:12900113-12900132 | MS.gene68064:CDS | 25.0% |
| !!! | GTCATTCTTGTTTTGATTTT+AGG | + | chr5.3:12901291-12901310 | MS.gene68064:intron | 25.0% |
| !!! | TGCTTTACTCTTTTTTTTCA+GGG | + | chr5.3:12901470-12901489 | MS.gene68064:intron | 25.0% |
| !!! | TTAACTTGTGATCTGTTAAA+GGG | + | chr5.3:12901429-12901448 | MS.gene68064:intron | 25.0% |
| !!! | TTCACTTTTCCTTAATTTGT+TGG | + | chr5.3:12899377-12899396 | MS.gene68064:intron | 25.0% |
| !!! | TTCTTTAGTTTCTCTTTTTG+AGG | + | chr5.3:12901004-12901023 | MS.gene68064:CDS | 25.0% |
| AAAAACACACACAAGGAATT+AGG | - | chr5.3:12901385-12901404 | None:intergenic | 30.0% | |
| AAAACACACACAAGGAATTA+GGG | - | chr5.3:12901384-12901403 | None:intergenic | 30.0% | |
| AATATATAGCTTACCCATCT+AGG | - | chr5.3:12902634-12902653 | None:intergenic | 30.0% | |
| AATCCTCAATTCTTTACCAT+TGG | - | chr5.3:12900306-12900325 | None:intergenic | 30.0% | |
| ACCATTGAAACAGGAAAATT+TGG | + | chr5.3:12901777-12901796 | MS.gene68064:intron | 30.0% | |
| ACTTCCTGCTTTAATTGTTA+TGG | + | chr5.3:12900419-12900438 | MS.gene68064:CDS | 30.0% | |
| AGAGTAATTCAAATTTCAGC+TGG | + | chr5.3:12901534-12901553 | MS.gene68064:CDS | 30.0% | |
| AGTAACTAGTATGTTGCAAA+AGG | + | chr5.3:12900479-12900498 | MS.gene68064:intron | 30.0% | |
| ATCCTCAATTCTTTACCATT+GGG | - | chr5.3:12900305-12900324 | None:intergenic | 30.0% | |
| CAAAAAATCCAATAGCCATT+TGG | - | chr5.3:12900108-12900127 | None:intergenic | 30.0% | |
| CAATATAATGCTGCTATGAT+TGG | - | chr5.3:12901828-12901847 | None:intergenic | 30.0% | |
| CCAAATCTGTTTAACTAGTA+TGG | + | chr5.3:12900539-12900558 | MS.gene68064:intron | 30.0% | |
| CCATACTAGTTAAACAGATT+TGG | - | chr5.3:12900542-12900561 | None:intergenic | 30.0% | |
| CTGTTTCAATGGTAAATAAC+AGG | - | chr5.3:12901770-12901789 | None:intergenic | 30.0% | |
| GACATAACATTAGTTATTCC+AGG | - | chr5.3:12901735-12901754 | None:intergenic | 30.0% | |
| GACTTATAGCCAATAAAACA+CGG | + | chr5.3:12901670-12901689 | MS.gene68064:intron | 30.0% | |
| GCCTGAACAATAGAAATTAT+AGG | - | chr5.3:12899920-12899939 | None:intergenic | 30.0% | |
| TATGAACCAACAACTACAAT+TGG | - | chr5.3:12899884-12899903 | None:intergenic | 30.0% | |
| TCAATCTTTGATCATAATGC+AGG | + | chr5.3:12899584-12899603 | MS.gene68064:intron | 30.0% | |
| TGAATATACAGATCCTTATG+AGG | + | chr5.3:12899952-12899971 | MS.gene68064:CDS | 30.0% | |
| TGTTTGTTTGAATTTCCTAG+AGG | + | chr5.3:12900029-12900048 | MS.gene68064:intron | 30.0% | |
| TTATAGGGACTAAAAGTTGA+AGG | + | chr5.3:12902315-12902334 | MS.gene68064:intron | 30.0% | |
| TTATAGGGACTAAAAGTTGA+AGG | - | chr5.3:12902334-12902315 | None:intergenic | 30.0% | |
| TTCAAGAAAAAACACACACA+AGG | - | chr5.3:12901392-12901411 | None:intergenic | 30.0% | |
| TTGTGAGAAATATTGTGGTA+TGG | - | chr5.3:12902581-12902600 | None:intergenic | 30.0% | |
| ! | AAAGTGTTTCCATTTATGCA+GGG | + | chr5.3:12900908-12900927 | MS.gene68064:intron | 30.0% |
| ! | AAGTCCTACTTTCAATGTTT+TGG | + | chr5.3:12900959-12900978 | MS.gene68064:CDS | 30.0% |
| ! | AAGTTGAAGGAAAATTTTCG+AGG | - | chr5.3:12901958-12901977 | None:intergenic | 30.0% |
| ! | AGTTGAAGGAAAATTTTCGA+GGG | - | chr5.3:12901957-12901976 | None:intergenic | 30.0% |
| ! | CATAAGTTCAAGTTTCCAAA+TGG | + | chr5.3:12900090-12900109 | MS.gene68064:CDS | 30.0% |
| ! | CTGTTATTTACCATTGAAAC+AGG | + | chr5.3:12901768-12901787 | MS.gene68064:intron | 30.0% |
| ! | TAATAATCTATGTGCTGTTG+TGG | + | chr5.3:12902409-12902428 | MS.gene68064:intron | 30.0% |
| ! | TCCAAATTTTCCTGTTTCAA+TGG | - | chr5.3:12901781-12901800 | None:intergenic | 30.0% |
| !! | AAAAGTGTTTCCATTTATGC+AGG | + | chr5.3:12900907-12900926 | MS.gene68064:intron | 30.0% |
| !! | GTTAACTTGTGATCTGTTAA+AGG | + | chr5.3:12901428-12901447 | MS.gene68064:intron | 30.0% |
| !!! | CAAATGGCTATTGGATTTTT+TGG | + | chr5.3:12900106-12900125 | MS.gene68064:CDS | 30.0% |
| !!! | CTGCTTTACTCTTTTTTTTC+AGG | + | chr5.3:12901469-12901488 | MS.gene68064:intron | 30.0% |
| !!! | TGCATTGGTTGCATTAATTT+TGG | + | chr5.3:12902785-12902804 | MS.gene68064:CDS | 30.0% |
| !!! | TGTGTTTTTTCTTGAATGCA+TGG | + | chr5.3:12901396-12901415 | MS.gene68064:intron | 30.0% |
| !!! | TTGTTTTGATTTTAGGGAGT+AGG | + | chr5.3:12901298-12901317 | MS.gene68064:intron | 30.0% |
| !!! | TTTTTTTTCAGGGAAAATGC+TGG | + | chr5.3:12901480-12901499 | MS.gene68064:intron | 30.0% |
| AAAACGATCAAACATGCACT+AGG | - | chr5.3:12900565-12900584 | None:intergenic | 35.0% | |
| AAAAGCTCATTGAGTTTGCA+AGG | - | chr5.3:12902924-12902943 | None:intergenic | 35.0% | |
| AACTTAATCTTACCATGGAG+CGG | - | chr5.3:12900781-12900800 | None:intergenic | 35.0% | |
| AATGCTGCTATGATTGGTAA+AGG | - | chr5.3:12901822-12901841 | None:intergenic | 35.0% | |
| ACATATAACTGTTGCTGCAT+TGG | + | chr5.3:12902770-12902789 | MS.gene68064:CDS | 35.0% | |
| ACATATGGAACTACAGATAG+TGG | - | chr5.3:12900246-12900265 | None:intergenic | 35.0% | |
| AGGTTTACTATGACAATGAG+AGG | + | chr5.3:12900049-12900068 | MS.gene68064:CDS | 35.0% | |
| ATAATTGTTCCTCAAATGGG+TGG | + | chr5.3:12899674-12899693 | MS.gene68064:CDS | 35.0% | |
| ATGAACAAGAAAGTCCTAGA+TGG | + | chr5.3:12902617-12902636 | MS.gene68064:CDS | 35.0% | |
| CAGTAAATAGCACTGCAAAT+CGG | - | chr5.3:12900647-12900666 | None:intergenic | 35.0% | |
| CATTGTCATAGTAAACCTCT+AGG | - | chr5.3:12900047-12900066 | None:intergenic | 35.0% | |
| CCTAACATCTCCATTATACA+AGG | - | chr5.3:12902880-12902899 | None:intergenic | 35.0% | |
| GAAAATACACCCTGCATAAA+TGG | - | chr5.3:12900920-12900939 | None:intergenic | 35.0% | |
| GAGAAGTTCACCTTGTATAA+TGG | + | chr5.3:12902867-12902886 | MS.gene68064:CDS | 35.0% | |
| GCTTCCAAAACATTGAAAGT+AGG | - | chr5.3:12900966-12900985 | None:intergenic | 35.0% | |
| GGTTTACTATGACAATGAGA+GGG | + | chr5.3:12900050-12900069 | MS.gene68064:CDS | 35.0% | |
| TAATTTCAGCATCTTGGCAT+TGG | + | chr5.3:12901619-12901638 | MS.gene68064:intron | 35.0% | |
| TCAAGTTTCCAAATGGCTAT+TGG | + | chr5.3:12900097-12900116 | MS.gene68064:CDS | 35.0% | |
| TCGGTCATTTATAGACTTCA+CGG | - | chr5.3:12900628-12900647 | None:intergenic | 35.0% | |
| TGAACAAGAAAGTCCTAGAT+GGG | + | chr5.3:12902618-12902637 | MS.gene68064:CDS | 35.0% | |
| TTCAGAACCAAATTTGTGCT+AGG | + | chr5.3:12902532-12902551 | MS.gene68064:CDS | 35.0% | |
| TTCCCAATGGTAAAGAATTG+AGG | + | chr5.3:12900300-12900319 | MS.gene68064:intron | 35.0% | |
| ! | ATGACAGTGGTTTAAAATGG+TGG | + | chr5.3:12902844-12902863 | MS.gene68064:CDS | 35.0% |
| ! | ATTGGTAGTTTACTCGTTTG+TGG | + | chr5.3:12901637-12901656 | MS.gene68064:intron | 35.0% |
| ! | ATTTTCCTTACCCTTTCCAA+TGG | + | chr5.3:12900934-12900953 | MS.gene68064:CDS | 35.0% |
| ! | CCTTGTATAATGGAGATGTT+AGG | + | chr5.3:12902877-12902896 | MS.gene68064:CDS | 35.0% |
| ! | TGACAGTGGTTTAAAATGGT+GGG | + | chr5.3:12902845-12902864 | MS.gene68064:CDS | 35.0% |
| ! | TGTTATGGTTTTCATCTCAC+AGG | + | chr5.3:12900434-12900453 | MS.gene68064:CDS | 35.0% |
| ! | TGTTTGTGTCCGTGTTTTAT+TGG | - | chr5.3:12901682-12901701 | None:intergenic | 35.0% |
| ! | TTTTCCTTACCCTTTCCAAT+GGG | + | chr5.3:12900935-12900954 | MS.gene68064:CDS | 35.0% |
| ! | TTTTCTTGAATGCATGGTAG+AGG | + | chr5.3:12901402-12901421 | MS.gene68064:intron | 35.0% |
| !! | ATTTGGTTCTGAAACTGTTG+AGG | - | chr5.3:12902525-12902544 | None:intergenic | 35.0% |
| !! | TGACTTGTTGTTATATGCAG+TGG | - | chr5.3:12900709-12900728 | None:intergenic | 35.0% |
| !! | TTGTTTTACTTGCAGTACAC+TGG | + | chr5.3:12901102-12901121 | MS.gene68064:intron | 35.0% |
| !! | TTTGGAAGCTTTTGCTATGA+TGG | + | chr5.3:12900977-12900996 | MS.gene68064:CDS | 35.0% |
| AACTGTTGAGGTTACAGAAC+TGG | - | chr5.3:12902513-12902532 | None:intergenic | 40.0% | |
| AATGTAGGCTGAGAAGACTA+GGG | + | chr5.3:12899790-12899809 | MS.gene68064:intron | 40.0% | |
| ACTCGTTTGTGGTTGTCTAT+AGG | + | chr5.3:12901648-12901667 | MS.gene68064:intron | 40.0% | |
| AGTCCAGCGAAAGTTACATA+TGG | - | chr5.3:12900261-12900280 | None:intergenic | 40.0% | |
| ATGACAATGAGAGGGATTCA+AGG | + | chr5.3:12900058-12900077 | MS.gene68064:CDS | 40.0% | |
| CAGCATTACCTTCTAACTCT+TGG | + | chr5.3:12899629-12899648 | MS.gene68064:CDS | 40.0% | |
| CGATTGCCAATTGTAGTTGT+TGG | + | chr5.3:12899875-12899894 | MS.gene68064:CDS | 40.0% | |
| CTAGGCTTCTCATTCTTCTT+AGG | + | chr5.3:12902550-12902569 | MS.gene68064:CDS | 40.0% | |
| CTATCAACTTGGTTTCCCAA+TGG | + | chr5.3:12900287-12900306 | MS.gene68064:CDS | 40.0% | |
| CTGTAATGCCAAGAGTTAGA+AGG | - | chr5.3:12899640-12899659 | None:intergenic | 40.0% | |
| CTTGCGAAATGCGTTGAAAT+TGG | + | chr5.3:12900396-12900415 | MS.gene68064:CDS | 40.0% | |
| GATGCAGCTAAAAATGACAG+TGG | + | chr5.3:12902831-12902850 | MS.gene68064:CDS | 40.0% | |
| GTCATTTATAGACTTCACGG+CGG | - | chr5.3:12900625-12900644 | None:intergenic | 40.0% | |
| GTTCCATATGTAACTTTCGC+TGG | + | chr5.3:12900255-12900274 | MS.gene68064:CDS | 40.0% | |
| TATACCGATGAAGATACTGC+AGG | - | chr5.3:12900599-12900618 | None:intergenic | 40.0% | |
| TATGTAACTTTCGCTGGACT+CGG | + | chr5.3:12900261-12900280 | MS.gene68064:CDS | 40.0% | |
| TCTTCCTGCAGTATCTTCAT+CGG | + | chr5.3:12900592-12900611 | MS.gene68064:intron | 40.0% | |
| TGAGAAGCCTAGCACAAATT+TGG | - | chr5.3:12902542-12902561 | None:intergenic | 40.0% | |
| TTTCCTTACCCTTTCCAATG+GGG | + | chr5.3:12900936-12900955 | MS.gene68064:CDS | 40.0% | |
| !! | GAACTACAGATAGTGGACTA+AGG | - | chr5.3:12900239-12900258 | None:intergenic | 40.0% |
| !! | GCTTTGTTTAGTGGCATGTT+TGG | + | chr5.3:12901322-12901341 | MS.gene68064:CDS | 40.0% |
| !! | GTTTTTGGAGAAATGCTGTC+AGG | + | chr5.3:12900128-12900147 | MS.gene68064:CDS | 40.0% |
| AGATAGGTGTACTAACGCCA+TGG | - | chr5.3:12899336-12899355 | None:intergenic | 45.0% | |
| ATTGTTCCTCAAATGGGTGG+AGG | + | chr5.3:12899677-12899696 | MS.gene68064:CDS | 45.0% | |
| CAATGTAGGCTGAGAAGACT+AGG | + | chr5.3:12899789-12899808 | MS.gene68064:intron | 45.0% | |
| CAGACACTTCTGTTTGTGTC+TGG | + | chr5.3:12899818-12899837 | MS.gene68064:CDS | 45.0% | |
| CCAGGTAATTGCTCTTTCAC+TGG | - | chr5.3:12899285-12899304 | None:intergenic | 45.0% | |
| CCAGTGAAAGAGCAATTACC+TGG | + | chr5.3:12899282-12899301 | MS.gene68064:CDS | 45.0% | |
| GCAGGTCAAGCAGTGATATT+GGG | + | chr5.3:12899602-12899621 | MS.gene68064:intron | 45.0% | |
| GGCATGTTTGGTTGTGTAAC+TGG | + | chr5.3:12901334-12901353 | MS.gene68064:CDS | 45.0% | |
| TAGGACTTCCCCATTGGAAA+GGG | - | chr5.3:12900947-12900966 | None:intergenic | 45.0% | |
| TATTCCAGGTGTCTGTGTGT+CGG | - | chr5.3:12901721-12901740 | None:intergenic | 45.0% | |
| TCCATATCTTGCAGCAGCAT+AGG | - | chr5.3:12901133-12901152 | None:intergenic | 45.0% | |
| TCCTATGCTGCTGCAAGATA+TGG | + | chr5.3:12901129-12901148 | MS.gene68064:CDS | 45.0% | |
| TGAAAGTAGGACTTCCCCAT+TGG | - | chr5.3:12900953-12900972 | None:intergenic | 45.0% | |
| TGCAGGTCAAGCAGTGATAT+TGG | + | chr5.3:12899601-12899620 | MS.gene68064:intron | 45.0% | |
| TGGAACTATGTAGCTTCTGC+TGG | + | chr5.3:12902475-12902494 | MS.gene68064:intron | 45.0% | |
| TTAATCTTACCATGGAGCGG+TGG | - | chr5.3:12900778-12900797 | None:intergenic | 45.0% | |
| ! | AATTGCTCTTTCACTGGCTG+TGG | - | chr5.3:12899279-12899298 | None:intergenic | 45.0% |
| ! | TATGTAGCTTCTGCTGGTCT+TGG | + | chr5.3:12902481-12902500 | MS.gene68064:intron | 45.0% |
| !! | GGAGTAGGTGCTTTGTTTAG+TGG | + | chr5.3:12901313-12901332 | MS.gene68064:CDS | 45.0% |
| !!! | AAAAAATTCTAATTTTTTTT+AGG | + | chr5.3:12902195-12902214 | MS.gene68064:intron | 5.0% |
| !!! | AAAAAATTCTAATTTTTTTT+TGG | - | chr5.3:12902214-12902195 | None:intergenic | 5.0% |
| !!! | ATGAATTTTAATATTTTTTA+TGG | + | chr5.3:12902141-12902160 | MS.gene68064:intron | 5.0% |
| AAAGCTGCCAATGAAGGTGG+TGG | + | chr5.3:12899192-12899211 | MS.gene68064:CDS | 50.0% | |
| ACATCTCCTCCACCCATTTG+AGG | - | chr5.3:12899686-12899705 | None:intergenic | 50.0% | |
| ACCAAAGCTGCCAATGAAGG+TGG | + | chr5.3:12899189-12899208 | MS.gene68064:CDS | 50.0% | |
| ACCACCTTCATTGGCAGCTT+TGG | - | chr5.3:12899193-12899212 | None:intergenic | 50.0% | |
| CTGATAATAGAAGGCGGCAC+CGG | - | chr5.3:12901165-12901184 | None:intergenic | 50.0% | |
| CTTCCCCATTGGAAAGGGTA+AGG | - | chr5.3:12900942-12900961 | None:intergenic | 50.0% | |
| GACACCAAAGCTGCCAATGA+AGG | + | chr5.3:12899186-12899205 | MS.gene68064:CDS | 50.0% | |
| GCATTAACAGTCCACCTCCA+TGG | + | chr5.3:12899316-12899335 | MS.gene68064:CDS | 50.0% | |
| GGTGCTAAAAATGCAGGTGG+TGG | + | chr5.3:12899225-12899244 | MS.gene68064:CDS | 50.0% | |
| GTAGGACTTCCCCATTGGAA+AGG | - | chr5.3:12900948-12900967 | None:intergenic | 50.0% | |
| TAGGTGTACTAACGCCATGG+AGG | - | chr5.3:12899333-12899352 | None:intergenic | 50.0% | |
| ! | GGACTCGGTCTCTATCAACT+TGG | + | chr5.3:12900276-12900295 | MS.gene68064:CDS | 50.0% |
| !! | AAGATATGGAAGTGCCACGC+CGG | + | chr5.3:12901143-12901162 | MS.gene68064:CDS | 50.0% |
| ACGGACACAAACACGCACAC+AGG | + | chr5.3:12901689-12901708 | MS.gene68064:intron | 55.0% | |
| CCGCCTTCTATTATCAGCCG+CGG | + | chr5.3:12901168-12901187 | MS.gene68064:CDS | 55.0% | |
| CCGCGGCTGATAATAGAAGG+CGG | - | chr5.3:12901171-12901190 | None:intergenic | 55.0% | |
| CTTACCATGGAGCGGTGGTT+AGG | - | chr5.3:12900773-12900792 | None:intergenic | 55.0% | |
| GAATCCTAACCACCGCTCCA+TGG | + | chr5.3:12900766-12900785 | MS.gene68064:CDS | 55.0% | |
| GCTCCGCGGCTGATAATAGA+AGG | - | chr5.3:12901174-12901193 | None:intergenic | 55.0% | |
| GGATTCCAGCGCGATCAGTT+CGG | - | chr5.3:12900752-12900771 | None:intergenic | 55.0% | |
| GTGTACTAACGCCATGGAGG+TGG | - | chr5.3:12899330-12899349 | None:intergenic | 55.0% | |
| TCTATTATCAGCCGCGGAGC+TGG | + | chr5.3:12901174-12901193 | MS.gene68064:CDS | 55.0% | |
| ! | GGCGGTGCTAAAAATGCAGG+TGG | + | chr5.3:12899222-12899241 | MS.gene68064:CDS | 55.0% |
| ! | TCTTTCACTGGCTGTGGTGC+TGG | - | chr5.3:12899273-12899292 | None:intergenic | 55.0% |
| !! | AATGAAGGTGGTGGTGGAGG+CGG | + | chr5.3:12899201-12899220 | MS.gene68064:CDS | 55.0% |
| AGCGCGATCAGTTCGGCAAC+TGG | - | chr5.3:12900745-12900764 | None:intergenic | 60.0% | |
| AGTTGCCGAACTGATCGCGC+TGG | + | chr5.3:12900744-12900763 | MS.gene68064:CDS | 60.0% | |
| ATACCACCCAACCAGCTCCG+CGG | - | chr5.3:12901188-12901207 | None:intergenic | 60.0% | |
| GCCTCCACCACCACCTTCAT+TGG | - | chr5.3:12899202-12899221 | None:intergenic | 60.0% | |
| TATCAGCCGCGGAGCTGGTT+GGG | + | chr5.3:12901179-12901198 | MS.gene68064:CDS | 60.0% | |
| TCCAGGTGTCTGTGTGTCGG+CGG | - | chr5.3:12901718-12901737 | None:intergenic | 60.0% | |
| TTATCAGCCGCGGAGCTGGT+TGG | + | chr5.3:12901178-12901197 | MS.gene68064:CDS | 60.0% | |
| ! | GCTGCCAATGAAGGTGGTGG+TGG | + | chr5.3:12899195-12899214 | MS.gene68064:CDS | 60.0% |
| ! | GGCGGCGGTGCTAAAAATGC+AGG | + | chr5.3:12899219-12899238 | MS.gene68064:CDS | 60.0% |
| !! | GCCAATGAAGGTGGTGGTGG+AGG | + | chr5.3:12899198-12899217 | MS.gene68064:CDS | 60.0% |
| ACCGCCGACACACAGACACC+TGG | + | chr5.3:12901714-12901733 | MS.gene68064:intron | 65.0% | |
| !! | AATAGAAGGCGGCACCGGCG+TGG | - | chr5.3:12901160-12901179 | None:intergenic | 65.0% |
| !! | GAAGGTGGTGGTGGAGGCGG+CGG | + | chr5.3:12899204-12899223 | MS.gene68064:CDS | 70.0% |
| CAGCCGCGGAGCTGGTTGGG+TGG | + | chr5.3:12901182-12901201 | MS.gene68064:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 12899162 | 12902956 | 12899162 | ID=MS.gene68064 |
| chr5.3 | mRNA | 12899162 | 12902956 | 12899162 | ID=MS.gene68064.t1;Parent=MS.gene68064 |
| chr5.3 | exon | 12899162 | 12899339 | 12899162 | ID=MS.gene68064.t1.exon1;Parent=MS.gene68064.t1 |
| chr5.3 | CDS | 12899162 | 12899339 | 12899162 | ID=cds.MS.gene68064.t1;Parent=MS.gene68064.t1 |
| chr5.3 | exon | 12899606 | 12899703 | 12899606 | ID=MS.gene68064.t1.exon2;Parent=MS.gene68064.t1 |
| chr5.3 | CDS | 12899606 | 12899703 | 12899606 | ID=cds.MS.gene68064.t1;Parent=MS.gene68064.t1 |
| chr5.3 | exon | 12899797 | 12899973 | 12899797 | ID=MS.gene68064.t1.exon3;Parent=MS.gene68064.t1 |
| chr5.3 | CDS | 12899797 | 12899973 | 12899797 | ID=cds.MS.gene68064.t1;Parent=MS.gene68064.t1 |
| chr5.3 | exon | 12900049 | 12900149 | 12900049 | ID=MS.gene68064.t1.exon4;Parent=MS.gene68064.t1 |
| chr5.3 | CDS | 12900049 | 12900149 | 12900049 | ID=cds.MS.gene68064.t1;Parent=MS.gene68064.t1 |
| chr5.3 | exon | 12900233 | 12900308 | 12900233 | ID=MS.gene68064.t1.exon5;Parent=MS.gene68064.t1 |
| chr5.3 | CDS | 12900233 | 12900308 | 12900233 | ID=cds.MS.gene68064.t1;Parent=MS.gene68064.t1 |
| chr5.3 | exon | 12900396 | 12900455 | 12900396 | ID=MS.gene68064.t1.exon6;Parent=MS.gene68064.t1 |
| chr5.3 | CDS | 12900396 | 12900455 | 12900396 | ID=cds.MS.gene68064.t1;Parent=MS.gene68064.t1 |
| chr5.3 | exon | 12900603 | 12900787 | 12900603 | ID=MS.gene68064.t1.exon7;Parent=MS.gene68064.t1 |
| chr5.3 | CDS | 12900603 | 12900787 | 12900603 | ID=cds.MS.gene68064.t1;Parent=MS.gene68064.t1 |
| chr5.3 | exon | 12900929 | 12901025 | 12900929 | ID=MS.gene68064.t1.exon8;Parent=MS.gene68064.t1 |
| chr5.3 | CDS | 12900929 | 12901025 | 12900929 | ID=cds.MS.gene68064.t1;Parent=MS.gene68064.t1 |
| chr5.3 | exon | 12901117 | 12901203 | 12901117 | ID=MS.gene68064.t1.exon9;Parent=MS.gene68064.t1 |
| chr5.3 | CDS | 12901117 | 12901203 | 12901117 | ID=cds.MS.gene68064.t1;Parent=MS.gene68064.t1 |
| chr5.3 | exon | 12901313 | 12901371 | 12901313 | ID=MS.gene68064.t1.exon10;Parent=MS.gene68064.t1 |
| chr5.3 | CDS | 12901313 | 12901371 | 12901313 | ID=cds.MS.gene68064.t1;Parent=MS.gene68064.t1 |
| chr5.3 | exon | 12901491 | 12901582 | 12901491 | ID=MS.gene68064.t1.exon11;Parent=MS.gene68064.t1 |
| chr5.3 | CDS | 12901491 | 12901582 | 12901491 | ID=cds.MS.gene68064.t1;Parent=MS.gene68064.t1 |
| chr5.3 | exon | 12901790 | 12901867 | 12901790 | ID=MS.gene68064.t1.exon12;Parent=MS.gene68064.t1 |
| chr5.3 | CDS | 12901790 | 12901867 | 12901790 | ID=cds.MS.gene68064.t1;Parent=MS.gene68064.t1 |
| chr5.3 | exon | 12902488 | 12902639 | 12902488 | ID=MS.gene68064.t1.exon13;Parent=MS.gene68064.t1 |
| chr5.3 | CDS | 12902488 | 12902639 | 12902488 | ID=cds.MS.gene68064.t1;Parent=MS.gene68064.t1 |
| chr5.3 | exon | 12902738 | 12902956 | 12902738 | ID=MS.gene68064.t1.exon14;Parent=MS.gene68064.t1 |
| chr5.3 | CDS | 12902738 | 12902956 | 12902738 | ID=cds.MS.gene68064.t1;Parent=MS.gene68064.t1 |
| Gene Sequence |
| Protein sequence |
