Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68149.t1 | XP_024635160.1 | 94.9 | 534 | 19 | 4 | 5 | 534 | 30 | 559 | 1.30E-300 | 1041.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68149.t1 | Q680B7 | 35.4 | 539 | 318 | 12 | 13 | 530 | 32 | 561 | 2.8e-86 | 320.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68149.t1 | A0A396J1W7 | 94.9 | 534 | 19 | 4 | 5 | 534 | 30 | 559 | 9.2e-301 | 1041.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene52090 | MS.gene68149 | PPI |
| MS.gene057723 | MS.gene68149 | PPI |
| MS.gene003507 | MS.gene68149 | PPI |
| MS.gene90963 | MS.gene68149 | PPI |
| MS.gene99993 | MS.gene68149 | PPI |
| MS.gene75410 | MS.gene68149 | PPI |
| MS.gene054660 | MS.gene68149 | PPI |
| MS.gene68149 | MS.gene59021 | PPI |
| MS.gene62099 | MS.gene68149 | PPI |
| MS.gene74061 | MS.gene68149 | PPI |
| MS.gene68149 | MS.gene032541 | PPI |
| MS.gene68149 | MS.gene53185 | PPI |
| MS.gene044959 | MS.gene68149 | PPI |
| MS.gene062453 | MS.gene68149 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68149.t1 | MTR_3g117800 | 94.019 | 535 | 24 | 4 | 4 | 534 | 5 | 535 | 0.0 | 1036 |
| MS.gene68149.t1 | MTR_3g117800 | 96.888 | 482 | 14 | 1 | 53 | 534 | 4 | 484 | 0.0 | 978 |
| MS.gene68149.t1 | MTR_3g117800 | 97.363 | 455 | 11 | 1 | 80 | 534 | 1 | 454 | 0.0 | 931 |
| MS.gene68149.t1 | MTR_4g074070 | 40.149 | 538 | 281 | 13 | 13 | 521 | 22 | 547 | 3.93e-130 | 391 |
| MS.gene68149.t1 | MTR_5g049180 | 39.662 | 532 | 279 | 8 | 13 | 513 | 22 | 542 | 1.81e-129 | 389 |
| MS.gene68149.t1 | MTR_7g024420 | 39.130 | 529 | 280 | 8 | 13 | 510 | 22 | 539 | 1.33e-128 | 387 |
| MS.gene68149.t1 | MTR_1g106200 | 38.986 | 513 | 274 | 9 | 13 | 493 | 31 | 536 | 4.52e-115 | 352 |
| MS.gene68149.t1 | MTR_1g106910 | 38.041 | 531 | 287 | 11 | 13 | 510 | 31 | 552 | 2.44e-113 | 348 |
| MS.gene68149.t1 | MTR_1g106770 | 35.466 | 547 | 309 | 10 | 20 | 530 | 4 | 542 | 1.06e-110 | 340 |
| MS.gene68149.t1 | MTR_1g106790 | 35.768 | 534 | 295 | 9 | 13 | 510 | 31 | 552 | 3.36e-109 | 337 |
| MS.gene68149.t1 | MTR_1g106200 | 36.257 | 513 | 255 | 9 | 13 | 493 | 37 | 509 | 1.53e-102 | 319 |
| MS.gene68149.t1 | MTR_3g103610 | 33.714 | 525 | 308 | 14 | 25 | 534 | 241 | 740 | 2.43e-77 | 258 |
| MS.gene68149.t1 | MTR_1g017020 | 32.079 | 505 | 322 | 9 | 39 | 534 | 411 | 903 | 2.24e-76 | 258 |
| MS.gene68149.t1 | MTR_4g121520 | 31.373 | 204 | 110 | 5 | 276 | 477 | 223 | 398 | 3.13e-24 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68149.t1 | AT4G38650 | 65.250 | 541 | 181 | 4 | 1 | 534 | 22 | 562 | 0.0 | 751 |
| MS.gene68149.t1 | AT4G38300 | 71.483 | 263 | 64 | 2 | 163 | 424 | 12 | 264 | 9.20e-138 | 400 |
| MS.gene68149.t1 | AT4G33840 | 37.746 | 559 | 299 | 11 | 13 | 534 | 25 | 571 | 8.52e-131 | 393 |
| MS.gene68149.t1 | AT4G33830 | 38.768 | 552 | 292 | 11 | 13 | 529 | 26 | 566 | 1.32e-128 | 387 |
| MS.gene68149.t1 | AT4G33860 | 39.319 | 529 | 282 | 11 | 13 | 510 | 25 | 545 | 1.66e-127 | 384 |
| MS.gene68149.t1 | AT2G14690 | 35.436 | 539 | 318 | 12 | 13 | 530 | 32 | 561 | 1.51e-101 | 317 |
| MS.gene68149.t1 | AT4G33810 | 36.461 | 469 | 281 | 10 | 64 | 521 | 49 | 511 | 8.49e-100 | 311 |
| MS.gene68149.t1 | AT4G33810 | 36.461 | 469 | 281 | 10 | 64 | 521 | 49 | 511 | 8.49e-100 | 311 |
| MS.gene68149.t1 | AT4G33810 | 36.461 | 469 | 281 | 10 | 64 | 521 | 89 | 551 | 3.11e-99 | 311 |
| MS.gene68149.t1 | AT4G33810 | 36.461 | 469 | 281 | 10 | 64 | 521 | 89 | 551 | 3.11e-99 | 311 |
| MS.gene68149.t1 | AT4G33810 | 36.461 | 469 | 281 | 10 | 64 | 521 | 89 | 551 | 3.11e-99 | 311 |
| MS.gene68149.t1 | AT4G33820 | 36.830 | 429 | 259 | 7 | 64 | 486 | 89 | 511 | 1.03e-92 | 294 |
| MS.gene68149.t1 | AT1G58370 | 32.411 | 506 | 320 | 11 | 39 | 534 | 421 | 914 | 9.27e-79 | 265 |
| MS.gene68149.t1 | AT1G58370 | 32.411 | 506 | 320 | 11 | 39 | 534 | 449 | 942 | 1.66e-78 | 265 |
| MS.gene68149.t1 | AT1G10050 | 33.543 | 477 | 301 | 10 | 65 | 534 | 596 | 1063 | 9.80e-74 | 253 |
| MS.gene68149.t1 | AT1G10050 | 33.543 | 477 | 301 | 10 | 65 | 534 | 596 | 1063 | 9.80e-74 | 253 |
| MS.gene68149.t1 | AT1G10050 | 33.543 | 477 | 301 | 10 | 65 | 534 | 628 | 1095 | 1.25e-73 | 253 |
| MS.gene68149.t1 | AT4G08160 | 30.989 | 526 | 331 | 11 | 25 | 534 | 240 | 749 | 1.17e-69 | 238 |
| MS.gene68149.t1 | AT4G08160 | 33.489 | 427 | 266 | 8 | 25 | 442 | 240 | 657 | 4.22e-63 | 218 |
Find 103 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTAGGAGAATATAGAATT+AGG | 0.197889 | 3.1:+92699299 | MS.gene68149:CDS |
| TTATTTGTAGGCAATTTATT+TGG | 0.199684 | 3.1:+92699060 | MS.gene68149:intron |
| ACCCATGCAGGATTGTATTT+AGG | 0.215174 | 3.1:-92698478 | None:intergenic |
| GGGGTTTCTTCTTCTTTCTA+TGG | 0.261359 | 3.1:+92697209 | MS.gene68149:CDS |
| CCCATGCAGGATTGTATTTA+GGG | 0.265487 | 3.1:-92698477 | None:intergenic |
| TCTTTGAAAACGAGCTTAAA+TGG | 0.282741 | 3.1:+92698341 | MS.gene68149:CDS |
| GCATGGGTTCTTAACCTTAC+AGG | 0.285919 | 3.1:+92698493 | MS.gene68149:CDS |
| CTCCATTGGTGGTGAGTAAA+TGG | 0.299076 | 3.1:-92698038 | None:intergenic |
| CTCTAACAAATTGCATCATT+TGG | 0.305368 | 3.1:-92698411 | None:intergenic |
| CCTTGTAATTTCCTTCCATT+AGG | 0.307008 | 3.1:-92698199 | None:intergenic |
| TTCACAAACCAATTCTGATA+TGG | 0.315882 | 3.1:-92698301 | None:intergenic |
| AAGAGCTATCCTAGACAAAT+TGG | 0.323111 | 3.1:+92698858 | MS.gene68149:CDS |
| TGTAAGCAGTAGAGTCATAT+AGG | 0.332357 | 3.1:-92697316 | None:intergenic |
| GCGATAGCAAAGACCATTCT+TGG | 0.334413 | 3.1:+92698271 | MS.gene68149:CDS |
| CTTGTAATTTCCTTCCATTA+GGG | 0.341062 | 3.1:-92698198 | None:intergenic |
| CATTGTCTGTGAGGCACATT+TGG | 0.350045 | 3.1:-92699165 | None:intergenic |
| ATATCAAAAGACTTTCCTAT+TGG | 0.362210 | 3.1:+92698244 | MS.gene68149:CDS |
| GCAACATACCATATCAGAAT+TGG | 0.364428 | 3.1:+92698293 | MS.gene68149:CDS |
| GTAAGCAGTAGAGTCATATA+GGG | 0.368725 | 3.1:-92697315 | None:intergenic |
| GCTCTTATAAGTGGAAGATT+TGG | 0.368945 | 3.1:-92698841 | None:intergenic |
| CCACCGTAAAGTGGCTTCTC+TGG | 0.371358 | 3.1:-92697467 | None:intergenic |
| ATGAGACATATAACTGTATT+GGG | 0.377080 | 3.1:+92697871 | MS.gene68149:CDS |
| TACAGATTCAGTTATGATAA+AGG | 0.377300 | 3.1:+92697830 | MS.gene68149:CDS |
| TGGACAGCACTTCATCCATA+TGG | 0.380084 | 3.1:+92699136 | MS.gene68149:CDS |
| AATGAGACATATAACTGTAT+TGG | 0.393839 | 3.1:+92697870 | MS.gene68149:CDS |
| CATCCAGAGAAGCCACTTTA+CGG | 0.403538 | 3.1:+92697464 | MS.gene68149:CDS |
| CTTAGGAGAATATAGAATTA+GGG | 0.404134 | 3.1:+92699300 | MS.gene68149:CDS |
| ATCAGAATTGGTTTGTGAAA+CGG | 0.414114 | 3.1:+92698305 | MS.gene68149:CDS |
| TGGCAAACTGGTCGTGTAGA+AGG | 0.419661 | 3.1:+92699238 | MS.gene68149:CDS |
| CAGTGAATGGGATAATGCTT+TGG | 0.423472 | 3.1:+92699116 | MS.gene68149:CDS |
| TTCTCACACCCTTCAGTGAA+TGG | 0.434692 | 3.1:+92699103 | MS.gene68149:CDS |
| CACATTTGGTAGCACCCATA+TGG | 0.442952 | 3.1:-92699151 | None:intergenic |
| CAACACTAGATCTTCCCGTT+TGG | 0.443376 | 3.1:+92698881 | MS.gene68149:CDS |
| ATAAGAGAACTAAGACAATA+TGG | 0.448976 | 3.1:+92698775 | MS.gene68149:CDS |
| TGCTACATTTCATTTCTTTG+AGG | 0.453293 | 3.1:+92698648 | MS.gene68149:CDS |
| AAGAAATGAAATGTAGCATT+GGG | 0.454110 | 3.1:-92698643 | None:intergenic |
| CAGTGTTGATGATATATTGT+TGG | 0.461856 | 3.1:-92698067 | None:intergenic |
| ATCAATCTCAGTAAGCCAAA+CGG | 0.466197 | 3.1:-92698896 | None:intergenic |
| ATCTTAACTGTGTACCTGTA+AGG | 0.467889 | 3.1:-92698507 | None:intergenic |
| TCAATCTCAGTAAGCCAAAC+GGG | 0.472110 | 3.1:-92698895 | None:intergenic |
| AAAGAAATGAAATGTAGCAT+TGG | 0.480004 | 3.1:-92698644 | None:intergenic |
| CAAAACAGAATTCATACATT+GGG | 0.480784 | 3.1:+92698570 | MS.gene68149:CDS |
| GATTTCTACGAACAAAGGCT+TGG | 0.482875 | 3.1:+92698619 | MS.gene68149:CDS |
| CCACTTTACGGTGGAGGAGG+AGG | 0.484097 | 3.1:+92697476 | MS.gene68149:CDS |
| GTTCATGTATCAGACCCTAA+TGG | 0.488462 | 3.1:+92698184 | MS.gene68149:CDS |
| TTTGCTATCGCAGAGCCAAT+AGG | 0.489645 | 3.1:-92698259 | None:intergenic |
| TTTATTTGGAACAAGTATTG+AGG | 0.493659 | 3.1:+92699074 | MS.gene68149:CDS |
| AAATGACCAACATCCACGTT+TGG | 0.493661 | 3.1:-92697904 | None:intergenic |
| AAATTAAGTCACAGTGTCAC+AGG | 0.494605 | 3.1:-92699391 | None:intergenic |
| GGACAGCACTTCATCCATAT+GGG | 0.495243 | 3.1:+92699137 | MS.gene68149:CDS |
| TCTAGGATAGCTCTTATAAG+TGG | 0.496749 | 3.1:-92698850 | None:intergenic |
| GATTTCAACAACTTACCATC+AGG | 0.497916 | 3.1:+92699187 | MS.gene68149:CDS |
| AAGCCACTTTACGGTGGAGG+AGG | 0.499159 | 3.1:+92697473 | MS.gene68149:CDS |
| TTCATAAACAAAGTTGCTAA+AGG | 0.499339 | 3.1:-92698688 | None:intergenic |
| GTTGGTTGATTCTCCATTGG+TGG | 0.504409 | 3.1:-92698049 | None:intergenic |
| CCTCCTCCTCCACCGTAAAG+TGG | 0.507893 | 3.1:-92697476 | None:intergenic |
| ATTGTTGGTTGATTCTCCAT+TGG | 0.513327 | 3.1:-92698052 | None:intergenic |
| TGTTGGTCATTTCTCAAAGG+TGG | 0.513377 | 3.1:+92697915 | MS.gene68149:CDS |
| TCTCACACCCTTCAGTGAAT+GGG | 0.515758 | 3.1:+92699104 | MS.gene68149:CDS |
| TTATTTGGAACAAGTATTGA+GGG | 0.519096 | 3.1:+92699075 | MS.gene68149:CDS |
| ATCTGAGTTGTGAAAGAAGA+TGG | 0.523796 | 3.1:-92697970 | None:intergenic |
| CTAGTGTTGCCAATTTGTCT+AGG | 0.527390 | 3.1:-92698867 | None:intergenic |
| ATATGGTATGTTGCCAAGAA+TGG | 0.540598 | 3.1:-92698284 | None:intergenic |
| ACTTTGATTTCTACGAACAA+AGG | 0.545752 | 3.1:+92698614 | MS.gene68149:CDS |
| ACAAAACAGAATTCATACAT+TGG | 0.546953 | 3.1:+92698569 | MS.gene68149:CDS |
| AAGATGGTAGATGAATTTGA+AGG | 0.553423 | 3.1:-92697954 | None:intergenic |
| GAGAAGCCACTTTACGGTGG+AGG | 0.555307 | 3.1:+92697470 | MS.gene68149:CDS |
| CAACAACACCAACATGAACA+TGG | 0.556480 | 3.1:+92697520 | MS.gene68149:CDS |
| TTGGAACAAGTATTGAGGGA+AGG | 0.561612 | 3.1:+92699079 | MS.gene68149:CDS |
| AGCATTATCCCATTCACTGA+AGG | 0.566045 | 3.1:-92699112 | None:intergenic |
| ATCTTCTTTCACAACTCAGA+TGG | 0.566431 | 3.1:+92697972 | MS.gene68149:CDS |
| AGATTATAGAAGACAAGTGA+AGG | 0.569889 | 3.1:-92697548 | None:intergenic |
| ACCCTAAATACAATCCTGCA+TGG | 0.572180 | 3.1:+92698476 | MS.gene68149:CDS |
| ATGGATGGAATTGGTCTCGA+GGG | 0.573124 | 3.1:+92698805 | MS.gene68149:CDS |
| CACACTTGATCATGATACTC+AGG | 0.577347 | 3.1:+92698927 | MS.gene68149:CDS |
| CCTAATGGAAGGAAATTACA+AGG | 0.585093 | 3.1:+92698199 | MS.gene68149:CDS |
| TCAACTTTCTCTCTATGTAG+AGG | 0.586344 | 3.1:+92699349 | MS.gene68149:CDS |
| GCATTATCCCATTCACTGAA+GGG | 0.590706 | 3.1:-92699111 | None:intergenic |
| CAACTTACCATCAGGTGATG+TGG | 0.598575 | 3.1:+92699195 | MS.gene68149:CDS |
| CTCAGATGGTAAAGATCACG+TGG | 0.600768 | 3.1:+92697986 | MS.gene68149:CDS |
| CCCTAAATACAATCCTGCAT+GGG | 0.602674 | 3.1:+92698477 | MS.gene68149:CDS |
| GGATGTTGGTCATTTCTCAA+AGG | 0.605842 | 3.1:+92697912 | MS.gene68149:CDS |
| GTCTGATACATGAACAGTGA+CGG | 0.610322 | 3.1:-92698176 | None:intergenic |
| TATGGATGGAATTGGTCTCG+AGG | 0.616485 | 3.1:+92698804 | MS.gene68149:CDS |
| GCCAACAAAATCATAGCTAG+AGG | 0.617131 | 3.1:+92698433 | MS.gene68149:CDS |
| TCTGCCTTCATGAGGCTCTG+TGG | 0.618660 | 3.1:-92698368 | None:intergenic |
| ATGTATCAGACCCTAATGGA+AGG | 0.621861 | 3.1:+92698188 | MS.gene68149:CDS |
| TAGTTGACTCTGCCTTCATG+AGG | 0.625434 | 3.1:-92698376 | None:intergenic |
| AATTAAGTCACAGTGTCACA+GGG | 0.628706 | 3.1:-92699390 | None:intergenic |
| TATGCCACAGAGCCTCATGA+AGG | 0.641188 | 3.1:+92698364 | MS.gene68149:CDS |
| TTATCCACCACATCACCTGA+TGG | 0.643051 | 3.1:-92699202 | None:intergenic |
| CTTACCATCAGGTGATGTGG+TGG | 0.645932 | 3.1:+92699198 | MS.gene68149:CDS |
| AGCCATTTACTCACCACCAA+TGG | 0.646406 | 3.1:+92698036 | MS.gene68149:CDS |
| ATTCAGTTATGATAAAGGCA+AGG | 0.650648 | 3.1:+92697835 | MS.gene68149:CDS |
| GAAGGTATCACAGATGAGCA+TGG | 0.651877 | 3.1:+92699256 | MS.gene68149:CDS |
| GTAAGGTTAAGAACCCATGC+AGG | 0.663112 | 3.1:-92698490 | None:intergenic |
| TAAGCAGTAGAGTCATATAG+GGG | 0.663519 | 3.1:-92697314 | None:intergenic |
| TGACTCTACTGCTTACACTC+AGG | 0.668323 | 3.1:+92697322 | MS.gene68149:CDS |
| GGCTGCTACAGTATGGGTGA+AGG | 0.668347 | 3.1:+92697800 | MS.gene68149:intron |
| GCGTTGACGCTTATATCTCA+CGG | 0.669191 | 3.1:+92698752 | MS.gene68149:CDS |
| CCAGAGAAGCCACTTTACGG+TGG | 0.680549 | 3.1:+92697467 | MS.gene68149:CDS |
| AGGTGAAGCCATGTTCATGT+TGG | 0.701518 | 3.1:-92697528 | None:intergenic |
| TGTTGAAATCATTGTCTGTG+AGG | 0.726848 | 3.1:-92699174 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATGAATTGAATCAATAAA+AGG | - | chr3.1:92697247-92697266 | None:intergenic | 15.0% |
| !! | TTATTTGTAGGCAATTTATT+TGG | + | chr3.1:92699060-92699079 | MS.gene68149:intron | 20.0% |
| !!! | GATAGATAATATGTTGTTTT+TGG | - | chr3.1:92698100-92698119 | None:intergenic | 20.0% |
| ! | AAAGAAATGAAATGTAGCAT+TGG | - | chr3.1:92698647-92698666 | None:intergenic | 25.0% |
| ! | AAGAAATGAAATGTAGCATT+GGG | - | chr3.1:92698646-92698665 | None:intergenic | 25.0% |
| ! | AATGAGACATATAACTGTAT+TGG | + | chr3.1:92697870-92697889 | MS.gene68149:CDS | 25.0% |
| ! | ACAAAACAGAATTCATACAT+TGG | + | chr3.1:92698569-92698588 | MS.gene68149:CDS | 25.0% |
| ! | ATAAGAGAACTAAGACAATA+TGG | + | chr3.1:92698775-92698794 | MS.gene68149:CDS | 25.0% |
| ! | ATATCAAAAGACTTTCCTAT+TGG | + | chr3.1:92698244-92698263 | MS.gene68149:CDS | 25.0% |
| ! | ATATGACATTTGTCATCATA+CGG | - | chr3.1:92697420-92697439 | None:intergenic | 25.0% |
| ! | ATGAGACATATAACTGTATT+GGG | + | chr3.1:92697871-92697890 | MS.gene68149:CDS | 25.0% |
| ! | CAAAACAGAATTCATACATT+GGG | + | chr3.1:92698570-92698589 | MS.gene68149:CDS | 25.0% |
| ! | CTTAGGAGAATATAGAATTA+GGG | + | chr3.1:92699300-92699319 | MS.gene68149:CDS | 25.0% |
| ! | TACAGATTCAGTTATGATAA+AGG | + | chr3.1:92697830-92697849 | MS.gene68149:CDS | 25.0% |
| ! | TCTTAGGAGAATATAGAATT+AGG | + | chr3.1:92699299-92699318 | MS.gene68149:CDS | 25.0% |
| ! | TTCATAAACAAAGTTGCTAA+AGG | - | chr3.1:92698691-92698710 | None:intergenic | 25.0% |
| !! | GTATGAATTCTGTTTTGTAT+TGG | - | chr3.1:92698567-92698586 | None:intergenic | 25.0% |
| !! | TTTATTTGGAACAAGTATTG+AGG | + | chr3.1:92699074-92699093 | MS.gene68149:CDS | 25.0% |
| !!! | AAGACAATATGGTGTTTTTA+TGG | + | chr3.1:92698786-92698805 | MS.gene68149:CDS | 25.0% |
| !!! | TTATTTGGAACAAGTATTGA+GGG | + | chr3.1:92699075-92699094 | MS.gene68149:CDS | 25.0% |
| AAGATGGTAGATGAATTTGA+AGG | - | chr3.1:92697957-92697976 | None:intergenic | 30.0% | |
| AGATTATAGAAGACAAGTGA+AGG | - | chr3.1:92697551-92697570 | None:intergenic | 30.0% | |
| ATTAAAAATGATTCCGTTGC+CGG | + | chr3.1:92697667-92697686 | MS.gene68149:intron | 30.0% | |
| ATTCAGTTATGATAAAGGCA+AGG | + | chr3.1:92697835-92697854 | MS.gene68149:CDS | 30.0% | |
| CTCTAACAAATTGCATCATT+TGG | - | chr3.1:92698414-92698433 | None:intergenic | 30.0% | |
| CTTGTAATTTCCTTCCATTA+GGG | - | chr3.1:92698201-92698220 | None:intergenic | 30.0% | |
| GGATTATTGTTGATGTCATT+GGG | + | chr3.1:92697748-92697767 | MS.gene68149:intron | 30.0% | |
| TGCCTACAAATAAAGAATGA+AGG | - | chr3.1:92699053-92699072 | None:intergenic | 30.0% | |
| TGCTACATTTCATTTCTTTG+AGG | + | chr3.1:92698648-92698667 | MS.gene68149:CDS | 30.0% | |
| TTCACAAACCAATTCTGATA+TGG | - | chr3.1:92698304-92698323 | None:intergenic | 30.0% | |
| ! | ACTTTGATTTCTACGAACAA+AGG | + | chr3.1:92698614-92698633 | MS.gene68149:CDS | 30.0% |
| ! | ATGGTTCACATAGCTTTTAT+GGG | + | chr3.1:92699275-92699294 | MS.gene68149:CDS | 30.0% |
| ! | GACACTATCTATTCTTTTTC+TGG | + | chr3.1:92697578-92697597 | MS.gene68149:CDS | 30.0% |
| ! | TAGAGGACACAATATTTTCT+GGG | + | chr3.1:92698450-92698469 | MS.gene68149:CDS | 30.0% |
| ! | TCTTTGAAAACGAGCTTAAA+TGG | + | chr3.1:92698341-92698360 | MS.gene68149:CDS | 30.0% |
| ! | TGCCTTCATTCTTTATTTGT+AGG | + | chr3.1:92699048-92699067 | MS.gene68149:intron | 30.0% |
| !! | ATCAGAATTGGTTTGTGAAA+CGG | + | chr3.1:92698305-92698324 | MS.gene68149:CDS | 30.0% |
| !! | CAATATGGTGTTTTTATGGA+TGG | + | chr3.1:92698790-92698809 | MS.gene68149:CDS | 30.0% |
| !! | CAGTGTTGATGATATATTGT+TGG | - | chr3.1:92698070-92698089 | None:intergenic | 30.0% |
| !!! | TGGATAAACTTTTTCAAGAG+TGG | + | chr3.1:92699218-92699237 | MS.gene68149:CDS | 30.0% |
| AAGAGCTATCCTAGACAAAT+TGG | + | chr3.1:92698858-92698877 | MS.gene68149:CDS | 35.0% | |
| ATAATCCGTTGTAGTCTAGT+TGG | - | chr3.1:92697735-92697754 | None:intergenic | 35.0% | |
| ATATGGTATGTTGCCAAGAA+TGG | - | chr3.1:92698287-92698306 | None:intergenic | 35.0% | |
| ATCAATCTCAGTAAGCCAAA+CGG | - | chr3.1:92698899-92698918 | None:intergenic | 35.0% | |
| ATCTGAGTTGTGAAAGAAGA+TGG | - | chr3.1:92697973-92697992 | None:intergenic | 35.0% | |
| ATCTTAACTGTGTACCTGTA+AGG | - | chr3.1:92698510-92698529 | None:intergenic | 35.0% | |
| ATCTTCTTTCACAACTCAGA+TGG | + | chr3.1:92697972-92697991 | MS.gene68149:CDS | 35.0% | |
| CCTAATGGAAGGAAATTACA+AGG | + | chr3.1:92698199-92698218 | MS.gene68149:CDS | 35.0% | |
| CCTTGTAATTTCCTTCCATT+AGG | - | chr3.1:92698202-92698221 | None:intergenic | 35.0% | |
| CGGATTATTGTTGATGTCAT+TGG | + | chr3.1:92697747-92697766 | MS.gene68149:intron | 35.0% | |
| GATTTCAACAACTTACCATC+AGG | + | chr3.1:92699187-92699206 | MS.gene68149:CDS | 35.0% | |
| GCAACATACCATATCAGAAT+TGG | + | chr3.1:92698293-92698312 | MS.gene68149:CDS | 35.0% | |
| GCTCTTATAAGTGGAAGATT+TGG | - | chr3.1:92698844-92698863 | None:intergenic | 35.0% | |
| GTAAGCAGTAGAGTCATATA+GGG | - | chr3.1:92697318-92697337 | None:intergenic | 35.0% | |
| TAAGCAGTAGAGTCATATAG+GGG | - | chr3.1:92697317-92697336 | None:intergenic | 35.0% | |
| TCAACTTTCTCTCTATGTAG+AGG | + | chr3.1:92699349-92699368 | MS.gene68149:CDS | 35.0% | |
| TGTAAGCAGTAGAGTCATAT+AGG | - | chr3.1:92697319-92697338 | None:intergenic | 35.0% | |
| TGTTGAAATCATTGTCTGTG+AGG | - | chr3.1:92699177-92699196 | None:intergenic | 35.0% | |
| TTAAAAATGATTCCGTTGCC+GGG | + | chr3.1:92697668-92697687 | MS.gene68149:intron | 35.0% | |
| ! | ATTGTTGGTTGATTCTCCAT+TGG | - | chr3.1:92698055-92698074 | None:intergenic | 35.0% |
| ! | CATAGCTTTTATGGGTTCTT+AGG | + | chr3.1:92699283-92699302 | MS.gene68149:CDS | 35.0% |
| ! | CATGGTTCACATAGCTTTTA+TGG | + | chr3.1:92699274-92699293 | MS.gene68149:CDS | 35.0% |
| ! | CTAGAGGACACAATATTTTC+TGG | + | chr3.1:92698449-92698468 | MS.gene68149:CDS | 35.0% |
| ! | TCCTCTAGCTATGATTTTGT+TGG | - | chr3.1:92698437-92698456 | None:intergenic | 35.0% |
| ! | TCTAGGATAGCTCTTATAAG+TGG | - | chr3.1:92698853-92698872 | None:intergenic | 35.0% |
| !! | CGATATTGTTTTGTTGCAGA+TGG | + | chr3.1:92697290-92697309 | MS.gene68149:intron | 35.0% |
| !! | GGTGTTTTTATGGATGGAAT+TGG | + | chr3.1:92698796-92698815 | MS.gene68149:CDS | 35.0% |
| AAATGACCAACATCCACGTT+TGG | - | chr3.1:92697907-92697926 | None:intergenic | 40.0% | |
| ACCCATGCAGGATTGTATTT+AGG | - | chr3.1:92698481-92698500 | None:intergenic | 40.0% | |
| ACCCTAAATACAATCCTGCA+TGG | + | chr3.1:92698476-92698495 | MS.gene68149:CDS | 40.0% | |
| AGCATTATCCCATTCACTGA+AGG | - | chr3.1:92699115-92699134 | None:intergenic | 40.0% | |
| ATGTATCAGACCCTAATGGA+AGG | + | chr3.1:92698188-92698207 | MS.gene68149:CDS | 40.0% | |
| CAACAACACCAACATGAACA+TGG | + | chr3.1:92697520-92697539 | MS.gene68149:CDS | 40.0% | |
| CACACTTGATCATGATACTC+AGG | + | chr3.1:92698927-92698946 | MS.gene68149:CDS | 40.0% | |
| CACGTCAGCATATATAACGA+TGG | - | chr3.1:92697781-92697800 | None:intergenic | 40.0% | |
| CAGTGAATGGGATAATGCTT+TGG | + | chr3.1:92699116-92699135 | MS.gene68149:CDS | 40.0% | |
| CATCGTTATATATGCTGACG+TGG | + | chr3.1:92697779-92697798 | MS.gene68149:intron | 40.0% | |
| CCCATGCAGGATTGTATTTA+GGG | - | chr3.1:92698480-92698499 | None:intergenic | 40.0% | |
| CCCTAAATACAATCCTGCAT+GGG | + | chr3.1:92698477-92698496 | MS.gene68149:CDS | 40.0% | |
| CCTAACCAACTAGACTACAA+CGG | + | chr3.1:92697727-92697746 | MS.gene68149:intron | 40.0% | |
| CTAGTGTTGCCAATTTGTCT+AGG | - | chr3.1:92698870-92698889 | None:intergenic | 40.0% | |
| GATTTCTACGAACAAAGGCT+TGG | + | chr3.1:92698619-92698638 | MS.gene68149:CDS | 40.0% | |
| GCATTATCCCATTCACTGAA+GGG | - | chr3.1:92699114-92699133 | None:intergenic | 40.0% | |
| GCCAACAAAATCATAGCTAG+AGG | + | chr3.1:92698433-92698452 | MS.gene68149:CDS | 40.0% | |
| GGATGTTGGTCATTTCTCAA+AGG | + | chr3.1:92697912-92697931 | MS.gene68149:CDS | 40.0% | |
| GGGGTTTCTTCTTCTTTCTA+TGG | + | chr3.1:92697209-92697228 | MS.gene68149:CDS | 40.0% | |
| GTCTAGTTGGTTAGGATACT+CGG | - | chr3.1:92697722-92697741 | None:intergenic | 40.0% | |
| GTCTGATACATGAACAGTGA+CGG | - | chr3.1:92698179-92698198 | None:intergenic | 40.0% | |
| GTTCATGTATCAGACCCTAA+TGG | + | chr3.1:92698184-92698203 | MS.gene68149:CDS | 40.0% | |
| TCAATCTCAGTAAGCCAAAC+GGG | - | chr3.1:92698898-92698917 | None:intergenic | 40.0% | |
| TGTTGGTCATTTCTCAAAGG+TGG | + | chr3.1:92697915-92697934 | MS.gene68149:CDS | 40.0% | |
| TTGATCATGATACTCAGGTG+AGG | + | chr3.1:92698932-92698951 | MS.gene68149:intron | 40.0% | |
| ! | TTTTAGCCAAACGTGGATGT+TGG | + | chr3.1:92697898-92697917 | MS.gene68149:CDS | 40.0% |
| !! | TTGGAACAAGTATTGAGGGA+AGG | + | chr3.1:92699079-92699098 | MS.gene68149:CDS | 40.0% |
| !!! | CTTTTTCAAGAGTGGCAAAC+TGG | + | chr3.1:92699226-92699245 | MS.gene68149:CDS | 40.0% |
| AGCCATTTACTCACCACCAA+TGG | + | chr3.1:92698036-92698055 | MS.gene68149:CDS | 45.0% | |
| AGGTGAAGCCATGTTCATGT+TGG | - | chr3.1:92697531-92697550 | None:intergenic | 45.0% | |
| CAACACTAGATCTTCCCGTT+TGG | + | chr3.1:92698881-92698900 | MS.gene68149:CDS | 45.0% | |
| CAACTTACCATCAGGTGATG+TGG | + | chr3.1:92699195-92699214 | MS.gene68149:CDS | 45.0% | |
| CATTGTCTGTGAGGCACATT+TGG | - | chr3.1:92699168-92699187 | None:intergenic | 45.0% | |
| CCGTTGTAGTCTAGTTGGTT+AGG | - | chr3.1:92697730-92697749 | None:intergenic | 45.0% | |
| CTCAGATGGTAAAGATCACG+TGG | + | chr3.1:92697986-92698005 | MS.gene68149:CDS | 45.0% | |
| GCATGGGTTCTTAACCTTAC+AGG | + | chr3.1:92698493-92698512 | MS.gene68149:CDS | 45.0% | |
| GCGATAGCAAAGACCATTCT+TGG | + | chr3.1:92698271-92698290 | MS.gene68149:CDS | 45.0% | |
| GGACAGCACTTCATCCATAT+GGG | + | chr3.1:92699137-92699156 | MS.gene68149:CDS | 45.0% | |
| GTAAGGTTAAGAACCCATGC+AGG | - | chr3.1:92698493-92698512 | None:intergenic | 45.0% | |
| TCTCACACCCTTCAGTGAAT+GGG | + | chr3.1:92699104-92699123 | MS.gene68149:CDS | 45.0% | |
| TGACTCTACTGCTTACACTC+AGG | + | chr3.1:92697322-92697341 | MS.gene68149:CDS | 45.0% | |
| TGGACAGCACTTCATCCATA+TGG | + | chr3.1:92699136-92699155 | MS.gene68149:CDS | 45.0% | |
| TTATCCACCACATCACCTGA+TGG | - | chr3.1:92699205-92699224 | None:intergenic | 45.0% | |
| TTCTCACACCCTTCAGTGAA+TGG | + | chr3.1:92699103-92699122 | MS.gene68149:CDS | 45.0% | |
| ! | ATGGATGGAATTGGTCTCGA+GGG | + | chr3.1:92698805-92698824 | MS.gene68149:CDS | 45.0% |
| ! | CACATTTGGTAGCACCCATA+TGG | - | chr3.1:92699154-92699173 | None:intergenic | 45.0% |
| ! | CATCCAGAGAAGCCACTTTA+CGG | + | chr3.1:92697464-92697483 | MS.gene68149:CDS | 45.0% |
| ! | GCGTTGACGCTTATATCTCA+CGG | + | chr3.1:92698752-92698771 | MS.gene68149:CDS | 45.0% |
| ! | GTTGGTTGATTCTCCATTGG+TGG | - | chr3.1:92698052-92698071 | None:intergenic | 45.0% |
| ! | TAGTTGACTCTGCCTTCATG+AGG | - | chr3.1:92698379-92698398 | None:intergenic | 45.0% |
| ! | TATGGATGGAATTGGTCTCG+AGG | + | chr3.1:92698804-92698823 | MS.gene68149:CDS | 45.0% |
| ! | TTTGCTATCGCAGAGCCAAT+AGG | - | chr3.1:92698262-92698281 | None:intergenic | 45.0% |
| !! | CTCCATTGGTGGTGAGTAAA+TGG | - | chr3.1:92698041-92698060 | None:intergenic | 45.0% |
| !! | GAAGGTATCACAGATGAGCA+TGG | + | chr3.1:92699256-92699275 | MS.gene68149:CDS | 45.0% |
| CTACTGCTTACACTCAGGTG+AGG | + | chr3.1:92697327-92697346 | MS.gene68149:intron | 50.0% | |
| CTTACCATCAGGTGATGTGG+TGG | + | chr3.1:92699198-92699217 | MS.gene68149:CDS | 50.0% | |
| GTAGCTAGCTAGCTAGCTAG+AGG | + | chr3.1:92698954-92698973 | MS.gene68149:intron | 50.0% | |
| TATGCCACAGAGCCTCATGA+AGG | + | chr3.1:92698364-92698383 | MS.gene68149:CDS | 50.0% | |
| TGACGTGGCTGCTACAGTAT+GGG | + | chr3.1:92697794-92697813 | MS.gene68149:intron | 50.0% | |
| TGGCAAACTGGTCGTGTAGA+AGG | + | chr3.1:92699238-92699257 | MS.gene68149:CDS | 50.0% | |
| !! | GGGACAGTTTTAGCCAAACG+TGG | + | chr3.1:92697891-92697910 | MS.gene68149:CDS | 50.0% |
| CCACCGTAAAGTGGCTTCTC+TGG | - | chr3.1:92697470-92697489 | None:intergenic | 55.0% | |
| CTGACGTGGCTGCTACAGTA+TGG | + | chr3.1:92697793-92697812 | MS.gene68149:intron | 55.0% | |
| GGCTGCTACAGTATGGGTGA+AGG | + | chr3.1:92697800-92697819 | MS.gene68149:intron | 55.0% | |
| TCTGCCTTCATGAGGCTCTG+TGG | - | chr3.1:92698371-92698390 | None:intergenic | 55.0% | |
| ! | AAGCCACTTTACGGTGGAGG+AGG | + | chr3.1:92697473-92697492 | MS.gene68149:CDS | 55.0% |
| ! | CCAGAGAAGCCACTTTACGG+TGG | + | chr3.1:92697467-92697486 | MS.gene68149:CDS | 55.0% |
| ! | GAGAAGCCACTTTACGGTGG+AGG | + | chr3.1:92697470-92697489 | MS.gene68149:CDS | 55.0% |
| AGAGACCCGGGTTCAAGTCC+CGG | - | chr3.1:92697689-92697708 | None:intergenic | 60.0% | |
| CCACTTTACGGTGGAGGAGG+AGG | + | chr3.1:92697476-92697495 | MS.gene68149:CDS | 60.0% | |
| CCTCCTCCTCCACCGTAAAG+TGG | - | chr3.1:92697479-92697498 | None:intergenic | 60.0% | |
| GACTTGAACCCGGGTCTCTC+GGG | + | chr3.1:92697690-92697709 | MS.gene68149:intron | 60.0% | |
| GGACTTGAACCCGGGTCTCT+CGG | + | chr3.1:92697689-92697708 | MS.gene68149:intron | 60.0% | |
| CCGGGTTCAAGTCCCGGCAA+CGG | - | chr3.1:92697683-92697702 | None:intergenic | 65.0% | |
| CCGTTGCCGGGACTTGAACC+CGG | + | chr3.1:92697680-92697699 | MS.gene68149:intron | 65.0% | |
| CGTTGCCGGGACTTGAACCC+GGG | + | chr3.1:92697681-92697700 | MS.gene68149:intron | 65.0% | |
| CGGCTCTCACCCGAGAGACC+CGG | - | chr3.1:92697702-92697721 | None:intergenic | 70.0% | |
| GGCTCTCACCCGAGAGACCC+GGG | - | chr3.1:92697701-92697720 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 92697206 | 92699405 | 92697206 | ID=MS.gene68149 |
| chr3.1 | mRNA | 92697206 | 92699405 | 92697206 | ID=MS.gene68149.t1;Parent=MS.gene68149 |
| chr3.1 | exon | 92697206 | 92697230 | 92697206 | ID=MS.gene68149.t1.exon1;Parent=MS.gene68149.t1 |
| chr3.1 | CDS | 92697206 | 92697230 | 92697206 | ID=cds.MS.gene68149.t1;Parent=MS.gene68149.t1 |
| chr3.1 | exon | 92697309 | 92697343 | 92697309 | ID=MS.gene68149.t1.exon2;Parent=MS.gene68149.t1 |
| chr3.1 | CDS | 92697309 | 92697343 | 92697309 | ID=cds.MS.gene68149.t1;Parent=MS.gene68149.t1 |
| chr3.1 | exon | 92697455 | 92697599 | 92697455 | ID=MS.gene68149.t1.exon3;Parent=MS.gene68149.t1 |
| chr3.1 | CDS | 92697455 | 92697599 | 92697455 | ID=cds.MS.gene68149.t1;Parent=MS.gene68149.t1 |
| chr3.1 | exon | 92697811 | 92698088 | 92697811 | ID=MS.gene68149.t1.exon4;Parent=MS.gene68149.t1 |
| chr3.1 | CDS | 92697811 | 92698088 | 92697811 | ID=cds.MS.gene68149.t1;Parent=MS.gene68149.t1 |
| chr3.1 | exon | 92698163 | 92698948 | 92698163 | ID=MS.gene68149.t1.exon5;Parent=MS.gene68149.t1 |
| chr3.1 | CDS | 92698163 | 92698948 | 92698163 | ID=cds.MS.gene68149.t1;Parent=MS.gene68149.t1 |
| chr3.1 | exon | 92699070 | 92699405 | 92699070 | ID=MS.gene68149.t1.exon6;Parent=MS.gene68149.t1 |
| chr3.1 | CDS | 92699070 | 92699405 | 92699070 | ID=cds.MS.gene68149.t1;Parent=MS.gene68149.t1 |
| Gene Sequence |
| Protein sequence |
