AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene68396

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene68396.t1 MTR_7g113780 96.350 274 7 3 1 272 1 273 0.0 516
MS.gene68396.t1 MTR_8g078200 34.409 279 165 4 9 272 16 291 2.58e-41 144
MS.gene68396.t1 MTR_3g111610 33.099 284 160 6 9 272 15 288 1.57e-39 139
MS.gene68396.t1 MTR_5g019330 33.562 292 156 8 1 268 1 278 7.64e-38 135
MS.gene68396.t1 MTR_1g021915 31.500 200 120 4 9 193 9 206 1.89e-21 90.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene68396.t1 AT3G06470 57.509 273 104 4 9 272 8 277 9.54e-101 295
MS.gene68396.t1 AT3G06460 52.290 262 115 5 9 263 8 266 7.58e-86 258
MS.gene68396.t1 AT1G75000 31.250 288 149 6 10 265 5 275 1.48e-37 134
MS.gene68396.t1 AT4G36830 30.142 282 160 8 9 265 9 278 1.10e-31 119
MS.gene68396.t1 AT4G36830 30.534 262 145 8 9 245 9 258 1.03e-26 106

Find 105 sgRNAs with CRISPR-Local

Find 110 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAATGGTCCCCTCTTCTTC+TGG 0.138928 1.3:-27083818 MS.gene68396:CDS
CTCCATCCTCTCCCTCATTA+TGG 0.310997 1.3:-27083919 MS.gene68396:CDS
GAGAGTGAGGGAGAGATAAA+AGG 0.313559 1.3:+27084016 None:intergenic
AGTACTGGTGGTGGATGCTC+TGG 0.317198 1.3:-27083462 MS.gene68396:CDS
CATGTGAAATTTAGAATGTT+TGG 0.317423 1.3:+27084092 None:intergenic
AAATGGTCCCCTCTTCTTCT+GGG 0.334002 1.3:-27083817 MS.gene68396:CDS
CTCTCCCTCATTATGGCTAT+TGG 0.337974 1.3:-27083912 MS.gene68396:CDS
TGAGGTGGGATGGGTGGGAG+AGG 0.346076 1.3:+27083981 None:intergenic
GGACCATTTGGAGGGGTATG+AGG 0.354842 1.3:+27083831 None:intergenic
GTGGGTTAGGATGGTGAGGG+AGG 0.363724 1.3:+27083887 None:intergenic
GGATGGGTGGGAGAGGGAAG+AGG 0.365911 1.3:+27083988 None:intergenic
CAGATGGTGGAGCGGAGGTT+GGG 0.377434 1.3:+27083861 None:intergenic
GGATGGAGAGGATGAGGTTG+TGG 0.388690 1.3:+27083934 None:intergenic
TTGAGGAAGTGAGGTGGGAT+GGG 0.392543 1.3:+27083972 None:intergenic
CAGAAGAAGAGGGGACCATT+TGG 0.395586 1.3:+27083819 None:intergenic
TCCCTATCATGTGTTATCTA+TGG 0.395738 1.3:-27083683 MS.gene68396:CDS
GAGTTGGTAAGAAGTGCAAT+AGG 0.397860 1.3:+27083636 None:intergenic
TGAACGTCACTAGTCTTTAT+CGG 0.399920 1.3:+27083335 None:intergenic
GTGGGAGAGGGAAGAGGAGA+AGG 0.402677 1.3:+27083994 None:intergenic
AGGAAAGAAAGGGATGAGGC+TGG 0.403020 1.3:+27084053 None:intergenic
AGATGGTGGAGCGGAGGTTG+GGG 0.415422 1.3:+27083862 None:intergenic
GAGGAATGAGAGACGTTTGA+TGG 0.423143 1.3:+27083728 None:intergenic
GGGTGTGGGTTAGGATGGTG+AGG 0.424795 1.3:+27083883 None:intergenic
GAGGTTGTGGAGTGCGGTGA+AGG 0.426675 1.3:+27083947 None:intergenic
TGGAAAGAGAGAGGAAAGAA+AGG 0.434953 1.3:+27084042 None:intergenic
TTTGAGGAAGTGAGGTGGGA+TGG 0.438957 1.3:+27083971 None:intergenic
AGCCATAGATAACACATGAT+AGG 0.441743 1.3:+27083681 None:intergenic
GCAGATGGTGGAGCGGAGGT+TGG 0.442514 1.3:+27083860 None:intergenic
GTGTTCAGCTTCGCCGTCTC+CGG 0.442875 1.3:-27083513 MS.gene68396:CDS
GGAAGAGGAGAAGGAGAGTG+AGG 0.444740 1.3:+27084003 None:intergenic
GGGAGAGGATGGAGAGGATG+AGG 0.450488 1.3:+27083928 None:intergenic
TTGGCAGAATCCTTCAACAT+TGG 0.451434 1.3:-27084127 MS.gene68396:CDS
AGGGATGAGGCTGGAGTGTG+AGG 0.456623 1.3:+27084062 None:intergenic
AGAGCATCCACCACCAGTAC+TGG 0.464465 1.3:+27083464 None:intergenic
GACGTTTGATGGATCTCAAA+AGG 0.471676 1.3:+27083739 None:intergenic
CCATTTGGAGGGGTATGAGG+AGG 0.474427 1.3:+27083834 None:intergenic
TGAACACGAACTGAACAATC+TGG 0.475700 1.3:+27083529 None:intergenic
TACTACTTCCTCACCACTGT+TGG 0.476064 1.3:-27083588 MS.gene68396:CDS
AGGAAGTGAGGTGGGATGGG+TGG 0.477567 1.3:+27083975 None:intergenic
TGTTGAAGGATTCTGCCAAT+GGG 0.479832 1.3:+27084131 None:intergenic
CTCATGCTTTATTATCACTT+CGG 0.480515 1.3:-27083489 MS.gene68396:CDS
GATGCTCTGGGATGAAAGCT+TGG 0.486306 1.3:-27083449 MS.gene68396:CDS
AGTTGGTAAGAAGTGCAATA+GGG 0.487218 1.3:+27083637 None:intergenic
GAGGTGGGATGGGTGGGAGA+GGG 0.487875 1.3:+27083982 None:intergenic
TATCACTTCGGATCCAGTAC+TGG 0.500674 1.3:-27083477 MS.gene68396:CDS
GATGAGGCTGGAGTGTGAGG+AGG 0.502414 1.3:+27084065 None:intergenic
GAGGGAGAGATAAAAGGCTA+TGG 0.508066 1.3:+27084022 None:intergenic
GAAGAGGAGAAGGAGAGTGA+GGG 0.511361 1.3:+27084004 None:intergenic
GGAAAGAGAGAGGAAAGAAA+GGG 0.514238 1.3:+27084043 None:intergenic
GGAAGTGAGGTGGGATGGGT+GGG 0.514653 1.3:+27083976 None:intergenic
CCTCCTCATACCCCTCCAAA+TGG 0.515262 1.3:-27083834 MS.gene68396:CDS
GAGGGAAGCAGATGGTGGAG+CGG 0.519215 1.3:+27083853 None:intergenic
AGAGAGGAAAGAAAGGGATG+AGG 0.524383 1.3:+27084049 None:intergenic
GCCATAGATAACACATGATA+GGG 0.526666 1.3:+27083682 None:intergenic
AGCCATAATGAGGGAGAGGA+TGG 0.527649 1.3:+27083917 None:intergenic
ATGTTGAAGGATTCTGCCAA+TGG 0.528628 1.3:+27084130 None:intergenic
GATGGTGGAGCGGAGGTTGG+GGG 0.528775 1.3:+27083863 None:intergenic
TGATAGGGACGGTGGAATGA+TGG 0.533402 1.3:+27083697 None:intergenic
TCGGTAACGACGCGTTTCCA+CGG 0.536456 1.3:+27083555 None:intergenic
GTACTGGTGGTGGATGCTCT+GGG 0.537624 1.3:-27083461 MS.gene68396:CDS
AGATGTAGGCCCAGAAGAAG+AGG 0.540490 1.3:+27083808 None:intergenic
AGGGTTTGAGGAAGTGAGGT+GGG 0.541375 1.3:+27083967 None:intergenic
TTCGGATCCAGTACTGGTGG+TGG 0.542647 1.3:-27083471 MS.gene68396:CDS
AAGAAGAGGGGACCATTTGG+AGG 0.542873 1.3:+27083822 None:intergenic
GGTAGACTAGCCAATGTTGA+AGG 0.550736 1.3:+27084117 None:intergenic
ATGAGGCTGGAGTGTGAGGA+GGG 0.554548 1.3:+27084066 None:intergenic
GGAGTGCGGTGAAGGGTTTG+AGG 0.557377 1.3:+27083955 None:intergenic
AAAAGGCTATGGAAAGAGAG+AGG 0.557470 1.3:+27084033 None:intergenic
GTGATAATAAAGCATGAGAC+CGG 0.563667 1.3:+27083494 None:intergenic
AGAAGAGGGGACCATTTGGA+GGG 0.565317 1.3:+27083823 None:intergenic
CAATAGCCATAATGAGGGAG+AGG 0.566959 1.3:+27083913 None:intergenic
AGGTGCCAATAGCCATAATG+AGG 0.568133 1.3:+27083907 None:intergenic
GATGTAGGCCCAGAAGAAGA+GGG 0.570108 1.3:+27083809 None:intergenic
GTGAAGGGTTTGAGGAAGTG+AGG 0.573391 1.3:+27083963 None:intergenic
AGGTTGTGGAGTGCGGTGAA+GGG 0.575003 1.3:+27083948 None:intergenic
CAAACATTCTAAATTTCACA+TGG 0.578086 1.3:-27084091 MS.gene68396:CDS
GGTGTGGGTTAGGATGGTGA+GGG 0.579431 1.3:+27083884 None:intergenic
AAGGGTTTGAGGAAGTGAGG+TGG 0.580580 1.3:+27083966 None:intergenic
GGAAGCAGATGGTGGAGCGG+AGG 0.583119 1.3:+27083856 None:intergenic
GGTATGAGGAGGGAAGCAGA+TGG 0.584509 1.3:+27083845 None:intergenic
CGACGCGTTTCCACGGCGGT+CGG 0.590079 1.3:+27083562 None:intergenic
GAGGATGAGGTTGTGGAGTG+CGG 0.590535 1.3:+27083941 None:intergenic
ATGAGGAGGGAAGCAGATGG+TGG 0.597449 1.3:+27083848 None:intergenic
CATTTGGAGGGGTATGAGGA+GGG 0.598396 1.3:+27083835 None:intergenic
ATAAAGCATGAGACCGGAGA+CGG 0.617252 1.3:+27083500 None:intergenic
TGAAATTTAGAATGTTTGGA+TGG 0.618798 1.3:+27084096 None:intergenic
CACTTCGGATCCAGTACTGG+TGG 0.625047 1.3:-27083474 MS.gene68396:CDS
GTCGGATTCCAACAGTGGTG+AGG 0.628146 1.3:+27083580 None:intergenic
CGGTGGAATGATGGTACACG+TGG 0.631074 1.3:+27083706 None:intergenic
CGGCGGTCGGATTCCAACAG+TGG 0.641832 1.3:+27083575 None:intergenic
TAATGAGGGAGAGGATGGAG+AGG 0.644404 1.3:+27083922 None:intergenic
AGGTGAATGGAAAACCCCAT+TGG 0.644657 1.3:-27084146 None:intergenic
GATGACGTGGACGGATGAGT+TGG 0.645959 1.3:+27083620 None:intergenic
GTTGAAGGATTCTGCCAATG+GGG 0.650167 1.3:+27084132 None:intergenic
AGAGTACATGATGACGTGGA+CGG 0.658163 1.3:+27083611 None:intergenic
GAACTGAACAATCTGGCAGT+CGG 0.662736 1.3:+27083536 None:intergenic
ATGTAGGCCCAGAAGAAGAG+GGG 0.663955 1.3:+27083810 None:intergenic
TGGAATGATGGTACACGTGG+AGG 0.666407 1.3:+27083709 None:intergenic
TAGATAACACATGATAGGGA+CGG 0.677431 1.3:+27083686 None:intergenic
GGTGCCAATAGCCATAATGA+GGG 0.679843 1.3:+27083908 None:intergenic
GAAGAGGGGACCATTTGGAG+GGG 0.685233 1.3:+27083824 None:intergenic
ATAACACATGATAGGGACGG+TGG 0.698770 1.3:+27083689 None:intergenic
AGTAAGAGTACATGATGACG+TGG 0.708386 1.3:+27083607 None:intergenic
CTGTTGGAATCCGACCGCCG+TGG 0.731632 1.3:-27083572 MS.gene68396:CDS
GTAACGACGCGTTTCCACGG+CGG 0.765126 1.3:+27083558 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! CAAACATTCTAAATTTCACA+TGG - chr1.3:27083393-27083412 MS.gene68396:CDS 25.0%
!! CATGTGAAATTTAGAATGTT+TGG + chr1.3:27083395-27083414 None:intergenic 25.0%
!! TGAAATTTAGAATGTTTGGA+TGG + chr1.3:27083391-27083410 None:intergenic 25.0%
!!! TGAATTCAAGATATTTTGAG+AGG + chr1.3:27083706-27083725 None:intergenic 25.0%
!!! TGTTTTTAATGCTTCTCTTT+TGG - chr1.3:27084069-27084088 MS.gene68396:CDS 25.0%
! CTCATGCTTTATTATCACTT+CGG - chr1.3:27083995-27084014 MS.gene68396:CDS 30.0%
AGCCATAGATAACACATGAT+AGG + chr1.3:27083806-27083825 None:intergenic 35.0%
GCCATAGATAACACATGATA+GGG + chr1.3:27083805-27083824 None:intergenic 35.0%
GTGATAATAAAGCATGAGAC+CGG + chr1.3:27083993-27084012 None:intergenic 35.0%
TAGATAACACATGATAGGGA+CGG + chr1.3:27083801-27083820 None:intergenic 35.0%
TCCCTATCATGTGTTATCTA+TGG - chr1.3:27083801-27083820 MS.gene68396:CDS 35.0%
!! AGTTGGTAAGAAGTGCAATA+GGG + chr1.3:27083850-27083869 None:intergenic 35.0%
!! TTTTGAGAGGTAGAAGATGT+AGG + chr1.3:27083693-27083712 None:intergenic 35.0%
AAAAGGCTATGGAAAGAGAG+AGG + chr1.3:27083454-27083473 None:intergenic 40.0%
ATGTTGAAGGATTCTGCCAA+TGG + chr1.3:27083357-27083376 None:intergenic 40.0%
GGAAAGAGAGAGGAAAGAAA+GGG + chr1.3:27083444-27083463 None:intergenic 40.0%
TGAACACGAACTGAACAATC+TGG + chr1.3:27083958-27083977 None:intergenic 40.0%
TGGAAAGAGAGAGGAAAGAA+AGG + chr1.3:27083445-27083464 None:intergenic 40.0%
TGTTGAAGGATTCTGCCAAT+GGG + chr1.3:27083356-27083375 None:intergenic 40.0%
TTGGCAGAATCCTTCAACAT+TGG - chr1.3:27083357-27083376 MS.gene68396:CDS 40.0%
! AGTAAGAGTACATGATGACG+TGG + chr1.3:27083880-27083899 None:intergenic 40.0%
! GACGTTTGATGGATCTCAAA+AGG + chr1.3:27083748-27083767 None:intergenic 40.0%
!! GAGTTGGTAAGAAGTGCAAT+AGG + chr1.3:27083851-27083870 None:intergenic 40.0%
AAATGGTCCCCTCTTCTTCT+GGG - chr1.3:27083667-27083686 MS.gene68396:CDS 45.0%
AGAGAGGAAAGAAAGGGATG+AGG + chr1.3:27083438-27083457 None:intergenic 45.0%
AGGTGCCAATAGCCATAATG+AGG + chr1.3:27083580-27083599 None:intergenic 45.0%
ATAAAGCATGAGACCGGAGA+CGG + chr1.3:27083987-27084006 None:intergenic 45.0%
ATAACACATGATAGGGACGG+TGG + chr1.3:27083798-27083817 None:intergenic 45.0%
CAATAGCCATAATGAGGGAG+AGG + chr1.3:27083574-27083593 None:intergenic 45.0%
CTCTCCCTCATTATGGCTAT+TGG - chr1.3:27083572-27083591 MS.gene68396:CDS 45.0%
GAACTGAACAATCTGGCAGT+CGG + chr1.3:27083951-27083970 None:intergenic 45.0%
GAGAGTGAGGGAGAGATAAA+AGG + chr1.3:27083471-27083490 None:intergenic 45.0%
GAGGAATGAGAGACGTTTGA+TGG + chr1.3:27083759-27083778 None:intergenic 45.0%
GAGGGAGAGATAAAAGGCTA+TGG + chr1.3:27083465-27083484 None:intergenic 45.0%
GGTGCCAATAGCCATAATGA+GGG + chr1.3:27083579-27083598 None:intergenic 45.0%
GTTGAAGGATTCTGCCAATG+GGG + chr1.3:27083355-27083374 None:intergenic 45.0%
TACTACTTCCTCACCACTGT+TGG - chr1.3:27083896-27083915 MS.gene68396:CDS 45.0%
TATCACTTCGGATCCAGTAC+TGG - chr1.3:27084007-27084026 MS.gene68396:CDS 45.0%
! AGAGTACATGATGACGTGGA+CGG + chr1.3:27083876-27083895 None:intergenic 45.0%
! GGTAGACTAGCCAATGTTGA+AGG + chr1.3:27083370-27083389 None:intergenic 45.0%
AAGAAGAGGGGACCATTTGG+AGG + chr1.3:27083665-27083684 None:intergenic 50.0%
AAGGGTTTGAGGAAGTGAGG+TGG + chr1.3:27083521-27083540 None:intergenic 50.0%
AGAAGAGGGGACCATTTGGA+GGG + chr1.3:27083664-27083683 None:intergenic 50.0%
AGATGTAGGCCCAGAAGAAG+AGG + chr1.3:27083679-27083698 None:intergenic 50.0%
AGCCATAATGAGGGAGAGGA+TGG + chr1.3:27083570-27083589 None:intergenic 50.0%
AGGAAAGAAAGGGATGAGGC+TGG + chr1.3:27083434-27083453 None:intergenic 50.0%
AGGGTTTGAGGAAGTGAGGT+GGG + chr1.3:27083520-27083539 None:intergenic 50.0%
ATGTAGGCCCAGAAGAAGAG+GGG + chr1.3:27083677-27083696 None:intergenic 50.0%
CAAATGGTCCCCTCTTCTTC+TGG - chr1.3:27083666-27083685 MS.gene68396:CDS 50.0%
CAGAAGAAGAGGGGACCATT+TGG + chr1.3:27083668-27083687 None:intergenic 50.0%
CTCCATCCTCTCCCTCATTA+TGG - chr1.3:27083565-27083584 MS.gene68396:CDS 50.0%
GAAGAGGAGAAGGAGAGTGA+GGG + chr1.3:27083483-27083502 None:intergenic 50.0%
GATGTAGGCCCAGAAGAAGA+GGG + chr1.3:27083678-27083697 None:intergenic 50.0%
GTGAAGGGTTTGAGGAAGTG+AGG + chr1.3:27083524-27083543 None:intergenic 50.0%
TAATGAGGGAGAGGATGGAG+AGG + chr1.3:27083565-27083584 None:intergenic 50.0%
TGATAGGGACGGTGGAATGA+TGG + chr1.3:27083790-27083809 None:intergenic 50.0%
TGGAATGATGGTACACGTGG+AGG + chr1.3:27083778-27083797 None:intergenic 50.0%
TTGAGGAAGTGAGGTGGGAT+GGG + chr1.3:27083515-27083534 None:intergenic 50.0%
TTTGAGGAAGTGAGGTGGGA+TGG + chr1.3:27083516-27083535 None:intergenic 50.0%
! CATTTGGAGGGGTATGAGGA+GGG + chr1.3:27083652-27083671 None:intergenic 50.0%
!! GATGCTCTGGGATGAAAGCT+TGG - chr1.3:27084035-27084054 MS.gene68396:CDS 50.0%
AGGTTGTGGAGTGCGGTGAA+GGG + chr1.3:27083539-27083558 None:intergenic 55.0%
ATGAGGAGGGAAGCAGATGG+TGG + chr1.3:27083639-27083658 None:intergenic 55.0%
ATGAGGCTGGAGTGTGAGGA+GGG + chr1.3:27083421-27083440 None:intergenic 55.0%
CCTCCTCATACCCCTCCAAA+TGG - chr1.3:27083650-27083669 MS.gene68396:CDS 55.0%
CGGTGGAATGATGGTACACG+TGG + chr1.3:27083781-27083800 None:intergenic 55.0%
GAAGAGGGGACCATTTGGAG+GGG + chr1.3:27083663-27083682 None:intergenic 55.0%
GAGGATGAGGTTGTGGAGTG+CGG + chr1.3:27083546-27083565 None:intergenic 55.0%
GATGACGTGGACGGATGAGT+TGG + chr1.3:27083867-27083886 None:intergenic 55.0%
GGAAGAGGAGAAGGAGAGTG+AGG + chr1.3:27083484-27083503 None:intergenic 55.0%
GGATGGAGAGGATGAGGTTG+TGG + chr1.3:27083553-27083572 None:intergenic 55.0%
GGTATGAGGAGGGAAGCAGA+TGG + chr1.3:27083642-27083661 None:intergenic 55.0%
GTCGGATTCCAACAGTGGTG+AGG + chr1.3:27083907-27083926 None:intergenic 55.0%
TCGGTAACGACGCGTTTCCA+CGG + chr1.3:27083932-27083951 None:intergenic 55.0%
! AGAGCATCCACCACCAGTAC+TGG + chr1.3:27084023-27084042 None:intergenic 55.0%
! CACTTCGGATCCAGTACTGG+TGG - chr1.3:27084010-27084029 MS.gene68396:CDS 55.0%
! CCATTTGGAGGGGTATGAGG+AGG + chr1.3:27083653-27083672 None:intergenic 55.0%
! GGACCATTTGGAGGGGTATG+AGG + chr1.3:27083656-27083675 None:intergenic 55.0%
!! AGTACTGGTGGTGGATGCTC+TGG - chr1.3:27084022-27084041 MS.gene68396:CDS 55.0%
!! GGTGTGGGTTAGGATGGTGA+GGG + chr1.3:27083603-27083622 None:intergenic 55.0%
!! GTACTGGTGGTGGATGCTCT+GGG - chr1.3:27084023-27084042 MS.gene68396:CDS 55.0%
!! TTCGGATCCAGTACTGGTGG+TGG - chr1.3:27084013-27084032 MS.gene68396:CDS 55.0%
AGGAAGTGAGGTGGGATGGG+TGG + chr1.3:27083512-27083531 None:intergenic 60.0%
AGGGATGAGGCTGGAGTGTG+AGG + chr1.3:27083425-27083444 None:intergenic 60.0%
GAGGTTGTGGAGTGCGGTGA+AGG + chr1.3:27083540-27083559 None:intergenic 60.0%
GATGAGGCTGGAGTGTGAGG+AGG + chr1.3:27083422-27083441 None:intergenic 60.0%
GGAAGTGAGGTGGGATGGGT+GGG + chr1.3:27083511-27083530 None:intergenic 60.0%
GGAGTGCGGTGAAGGGTTTG+AGG + chr1.3:27083532-27083551 None:intergenic 60.0%
GGGAGAGGATGGAGAGGATG+AGG + chr1.3:27083559-27083578 None:intergenic 60.0%
GTAACGACGCGTTTCCACGG+CGG + chr1.3:27083929-27083948 None:intergenic 60.0%
GTGGGAGAGGGAAGAGGAGA+AGG + chr1.3:27083493-27083512 None:intergenic 60.0%
GTGTTCAGCTTCGCCGTCTC+CGG - chr1.3:27083971-27083990 MS.gene68396:CDS 60.0%
!! AGATGGTGGAGCGGAGGTTG+GGG + chr1.3:27083625-27083644 None:intergenic 60.0%
!! CAGATGGTGGAGCGGAGGTT+GGG + chr1.3:27083626-27083645 None:intergenic 60.0%
!! GAGGGAAGCAGATGGTGGAG+CGG + chr1.3:27083634-27083653 None:intergenic 60.0%
!! GGGTGTGGGTTAGGATGGTG+AGG + chr1.3:27083604-27083623 None:intergenic 60.0%
!! GTGGGTTAGGATGGTGAGGG+AGG + chr1.3:27083600-27083619 None:intergenic 60.0%
!! GTTGGGGGTGTGGGTTAGGA+TGG + chr1.3:27083609-27083628 None:intergenic 60.0%
CGGCGGTCGGATTCCAACAG+TGG + chr1.3:27083912-27083931 None:intergenic 65.0%
CTGTTGGAATCCGACCGCCG+TGG - chr1.3:27083912-27083931 MS.gene68396:CDS 65.0%
GAGGTGGGATGGGTGGGAGA+GGG + chr1.3:27083505-27083524 None:intergenic 65.0%
GGATGGGTGGGAGAGGGAAG+AGG + chr1.3:27083499-27083518 None:intergenic 65.0%
TGAGGTGGGATGGGTGGGAG+AGG + chr1.3:27083506-27083525 None:intergenic 65.0%
! GGAGGTTGGGGGTGTGGGTT+AGG + chr1.3:27083613-27083632 None:intergenic 65.0%
!! GATGGTGGAGCGGAGGTTGG+GGG + chr1.3:27083624-27083643 None:intergenic 65.0%
!! GCAGATGGTGGAGCGGAGGT+TGG + chr1.3:27083627-27083646 None:intergenic 65.0%
!! GGAAGCAGATGGTGGAGCGG+AGG + chr1.3:27083631-27083650 None:intergenic 65.0%
CGACGCGTTTCCACGGCGGT+CGG + chr1.3:27083925-27083944 None:intergenic 70.0%
TGGAGCGGAGGTTGGGGGTG+TGG + chr1.3:27083619-27083638 None:intergenic 70.0%
! GGAGCGGAGGTTGGGGGTGT+GGG + chr1.3:27083618-27083637 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 27083344 27084162 27083344 ID=MS.gene68396
chr1.3 mRNA 27083344 27084162 27083344 ID=MS.gene68396.t1;Parent=MS.gene68396
chr1.3 exon 27083344 27084162 27083344 ID=MS.gene68396.t1.exon1;Parent=MS.gene68396.t1
chr1.3 CDS 27083344 27084162 27083344 ID=cds.MS.gene68396.t1;Parent=MS.gene68396.t1
Gene Sequence

>MS.gene68396

ATGGAAAACCCCATTGGCAGAATCCTTCAACATTGGCTAGTCTACCATCCAAACATTCTAAATTTCACATGGAACCCTCCTCACACTCCAGCCTCATCCCTTTCTTTCCTCTCTCTTTCCATAGCCTTTTATCTCTCCCTCACTCTCCTTCTCCTCTTCCCTCTCCCACCCATCCCACCTCACTTCCTCAAACCCTTCACCGCACTCCACAACCTCATCCTCTCCATCCTCTCCCTCATTATGGCTATTGGCACCTCCCTCACCATCCTAACCCACACCCCCAACCTCCGCTCCACCATCTGCTTCCCTCCTCATACCCCTCCAAATGGTCCCCTCTTCTTCTGGGCCTACATCTTCTACCTCTCAAAATATCTTGAATTCATTGACACTCTCTTCATCATCCTTTTGAGATCCATCAAACGTCTCTCATTCCTCCACGTGTACCATCATTCCACCGTCCCTATCATGTGTTATCTATGGCTTAATTCTTCTCAATCACTCTTCCCTATTGCACTTCTTACCAACTCATCCGTCCACGTCATCATGTACTCTTACTACTTCCTCACCACTGTTGGAATCCGACCGCCGTGGAAACGCGTCGTTACCGACTGCCAGATTGTTCAGTTCGTGTTCAGCTTCGCCGTCTCCGGTCTCATGCTTTATTATCACTTCGGATCCAGTACTGGTGGTGGATGCTCTGGGATGAAAGCTTGGTGCTTCAATGCTGTTTTTAATGCTTCTCTTTTGGCTCTTTTTCTTGATTTTCATCTCAAGAGTTATGCTAATTCTAAGAAGAAACGTACTACCGATAAAGACTAG
Protein sequence

>MS.gene68396.t1

MENPIGRILQHWLVYHPNILNFTWNPPHTPASSLSFLSLSIAFYLSLTLLLLFPLPPIPPHFLKPFTALHNLILSILSLIMAIGTSLTILTHTPNLRSTICFPPHTPPNGPLFFWAYIFYLSKYLEFIDTLFIILLRSIKRLSFLHVYHHSTVPIMCYLWLNSSQSLFPIALLTNSSVHVIMYSYYFLTTVGIRPPWKRVVTDCQIVQFVFSFAVSGLMLYYHFGSSTGGGCSGMKAWCFNAVFNASLLALFLDFHLKSYANSKKKRTTDKD