Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68765.t1 | PNY08193.1 | 86 | 542 | 62 | 5 | 1 | 537 | 1 | 533 | 5.10E-255 | 890.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68765.t1 | Q9SI61 | 80.4 | 514 | 98 | 2 | 45 | 558 | 48 | 558 | 1.0e-235 | 817.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68765.t1 | A0A2K3NYV3 | 86.0 | 542 | 62 | 5 | 1 | 537 | 1 | 533 | 3.7e-255 | 890.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049488 | MS.gene68765 | 0.810032 | 1.41E-50 | -1.69E-46 |
| MS.gene050060 | MS.gene68765 | 0.80364 | 3.17E-49 | -1.69E-46 |
| MS.gene050670 | MS.gene68765 | 0.825121 | 5.57E-54 | -1.69E-46 |
| MS.gene051525 | MS.gene68765 | 0.803815 | 2.91E-49 | -1.69E-46 |
| MS.gene051582 | MS.gene68765 | 0.827188 | 1.80E-54 | -1.69E-46 |
| MS.gene052011 | MS.gene68765 | -0.801696 | 7.97E-49 | -1.69E-46 |
| MS.gene052188 | MS.gene68765 | 0.801856 | 7.39E-49 | -1.69E-46 |
| MS.gene052322 | MS.gene68765 | 0.811974 | 5.35E-51 | -1.69E-46 |
| MS.gene054107 | MS.gene68765 | 0.801669 | 8.07E-49 | -1.69E-46 |
| MS.gene055369 | MS.gene68765 | 0.802761 | 4.81E-49 | -1.69E-46 |
| MS.gene05553 | MS.gene68765 | 0.830973 | 2.17E-55 | -1.69E-46 |
| MS.gene056337 | MS.gene68765 | 0.824032 | 1.01E-53 | -1.69E-46 |
| MS.gene056659 | MS.gene68765 | 0.800156 | 1.64E-48 | -1.69E-46 |
| MS.gene056782 | MS.gene68765 | 0.811167 | 8.02E-51 | -1.69E-46 |
| MS.gene057124 | MS.gene68765 | 0.859026 | 5.50E-63 | -1.69E-46 |
| MS.gene057749 | MS.gene68765 | 0.802708 | 4.93E-49 | -1.69E-46 |
| MS.gene057823 | MS.gene68765 | 0.808066 | 3.72E-50 | -1.69E-46 |
| MS.gene05886 | MS.gene68765 | 0.851981 | 6.23E-61 | -1.69E-46 |
| MS.gene059420 | MS.gene68765 | 0.815727 | 7.97E-52 | -1.69E-46 |
| MS.gene061154 | MS.gene68765 | 0.803352 | 3.63E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68765.t1 | MTR_4g072110 | 78.369 | 564 | 98 | 7 | 1 | 558 | 1 | 546 | 0.0 | 870 |
| MS.gene68765.t1 | MTR_3g117590 | 87.010 | 408 | 22 | 2 | 139 | 546 | 27 | 403 | 0.0 | 703 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68765.t1 | AT2G16570 | 84.375 | 480 | 74 | 1 | 79 | 558 | 80 | 558 | 0.0 | 838 |
| MS.gene68765.t1 | AT4G34740 | 83.197 | 488 | 79 | 2 | 72 | 558 | 68 | 553 | 0.0 | 837 |
| MS.gene68765.t1 | AT4G38880 | 67.235 | 528 | 160 | 5 | 12 | 537 | 9 | 525 | 0.0 | 717 |
Find 111 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCCCAATTCTGTTGTATT+TGG | 0.096765 | 3.2:-92826903 | MS.gene68765:CDS |
| ATTATTGGGTCTTGTTATTA+TGG | 0.169325 | 3.2:-92826504 | MS.gene68765:CDS |
| GTTATAGCTGTTCCTGATTC+TGG | 0.192514 | 3.2:-92826807 | MS.gene68765:CDS |
| ATCTTCATCTCTTTCTGATT+TGG | 0.197096 | 3.2:+92826225 | None:intergenic |
| TCACAGAAGATTAGAGATTT+TGG | 0.203480 | 3.2:-92826687 | MS.gene68765:CDS |
| CAGAAAGAGATGAAGATTAT+TGG | 0.205620 | 3.2:-92826219 | MS.gene68765:CDS |
| ATTGCATGTCCACCAATTAT+TGG | 0.249163 | 3.2:-92826519 | MS.gene68765:CDS |
| GCTGAGATTAAGGAATTTAT+TGG | 0.256050 | 3.2:-92826432 | MS.gene68765:CDS |
| AAGATTGTTTGGTGAAATAT+TGG | 0.274673 | 3.2:-92826859 | MS.gene68765:CDS |
| TCAACAATTCTCGCTATAAA+AGG | 0.280350 | 3.2:+92827215 | None:intergenic |
| GTGAATGGGAATGTGTTGTT+AGG | 0.284914 | 3.2:+92827707 | None:intergenic |
| TCTTCATCTCTTTCTGATTT+GGG | 0.291726 | 3.2:+92826226 | None:intergenic |
| TAATAACAAGACCCAATAAT+TGG | 0.293975 | 3.2:+92826507 | None:intergenic |
| AATGAGTGTAGCTGAGATTA+AGG | 0.295289 | 3.2:-92826442 | MS.gene68765:CDS |
| TTTCCCAAATACAACAGAAT+TGG | 0.301159 | 3.2:+92826899 | None:intergenic |
| TAGCATAGACGTGAAGCTTC+TGG | 0.312710 | 3.2:+92827611 | None:intergenic |
| TCCAGGTAATTGACGAAGTT+TGG | 0.318477 | 3.2:+92827466 | None:intergenic |
| CCGGTTCGTGCTGTTCTTGA+AGG | 0.320056 | 3.2:-92826645 | MS.gene68765:CDS |
| TGCCCAATTCTGTTGTATTT+GGG | 0.324405 | 3.2:-92826902 | MS.gene68765:CDS |
| TTCTGTTATGCTTGTTTCAC+TGG | 0.324666 | 3.2:-92826342 | MS.gene68765:CDS |
| TAACGATACCAGCACCTTCT+TGG | 0.325690 | 3.2:+92827558 | None:intergenic |
| TGTGTTGTTAGGGTTGTTAT+TGG | 0.329634 | 3.2:+92827718 | None:intergenic |
| AGAAATGAACTTGAGGAATC+TGG | 0.335037 | 3.2:-92827305 | MS.gene68765:CDS |
| TTGCATGTCCACCAATTATT+GGG | 0.345820 | 3.2:-92826518 | MS.gene68765:CDS |
| AGAATGAGAAGGTGAGGTTT+TGG | 0.352465 | 3.2:+92827766 | None:intergenic |
| TGACCGATGGCTAAGGTTCC+AGG | 0.358511 | 3.2:+92827449 | None:intergenic |
| GTTGCTGTCAGAGATCCTTT+TGG | 0.373947 | 3.2:-92827134 | MS.gene68765:CDS |
| TTTGTTGCAGGTTACCGTTT+TGG | 0.378465 | 3.2:-92827377 | MS.gene68765:CDS |
| AAAGTCCTTCAAACTGTTAC+CGG | 0.388219 | 3.2:-92827521 | MS.gene68765:CDS |
| TTTAGGTTTGTTGAGGGAAG+AGG | 0.397497 | 3.2:+92827874 | None:intergenic |
| TTAAGTTCAGTAGGTTCAAC+AGG | 0.399551 | 3.2:+92826312 | None:intergenic |
| TTCCCAAATACAACAGAATT+GGG | 0.403442 | 3.2:+92826900 | None:intergenic |
| GTGCTGTTCTTGAAGGGAAA+AGG | 0.406661 | 3.2:-92826638 | MS.gene68765:CDS |
| TATGAATCAAGAAGATTGTT+TGG | 0.412509 | 3.2:-92826870 | MS.gene68765:CDS |
| CTAATCAAACCCTGTTGAAA+AGG | 0.417806 | 3.2:+92826744 | None:intergenic |
| TCTGGTGTTGTTGCTGCACT+TGG | 0.419203 | 3.2:-92826789 | MS.gene68765:CDS |
| TTCGTCGTCATCATCATTAG+TGG | 0.423475 | 3.2:+92827676 | None:intergenic |
| TGAATGGGAATGTGTTGTTA+GGG | 0.428275 | 3.2:+92827708 | None:intergenic |
| AGAGAGTTTAGGTTTGTTGA+GGG | 0.448031 | 3.2:+92827868 | None:intergenic |
| CAAGTTCATTTCTCAAGAAA+CGG | 0.451446 | 3.2:+92827315 | None:intergenic |
| GCAGCAACAACACCAGAATC+AGG | 0.452380 | 3.2:+92826795 | None:intergenic |
| CGTGAAGAATGTGGCATTGT+TGG | 0.452730 | 3.2:-92827647 | MS.gene68765:CDS |
| TCCGTTGGTGTTGCTCATAA+TGG | 0.454130 | 3.2:-92827353 | MS.gene68765:CDS |
| ATAACTACATCACAATCAAC+AGG | 0.456568 | 3.2:+92826825 | None:intergenic |
| TCCTGGTGAAATTGTGGTTG+TGG | 0.462497 | 3.2:-92827006 | MS.gene68765:CDS |
| CTTCAAACTGTTACCGGTGT+TGG | 0.464798 | 3.2:-92827515 | MS.gene68765:CDS |
| TGCTGTTCTTGAAGGGAAAA+GGG | 0.475172 | 3.2:-92826637 | MS.gene68765:CDS |
| GGATAGTTTGAAGAAGTTGT+TGG | 0.482382 | 3.2:-92826382 | MS.gene68765:CDS |
| CTTGGTTATGCTGCAAAAGC+TGG | 0.485841 | 3.2:-92826771 | MS.gene68765:CDS |
| TGTGGCATTGTTGGTATCTA+CGG | 0.487304 | 3.2:-92827638 | MS.gene68765:CDS |
| GTTGAGGGAAGAGGAAGAGA+GGG | 0.493244 | 3.2:+92827883 | None:intergenic |
| CCTTCAAGAACAGCACGAAC+CGG | 0.494340 | 3.2:+92826645 | None:intergenic |
| AAGAGAGTTTAGGTTTGTTG+AGG | 0.497209 | 3.2:+92827867 | None:intergenic |
| GATAGTTTGAAGAAGTTGTT+GGG | 0.498781 | 3.2:-92826381 | MS.gene68765:CDS |
| TGTTGAGGGAAGAGGAAGAG+AGG | 0.501159 | 3.2:+92827882 | None:intergenic |
| GATATCAACTCTTCAGAGCT+AGG | 0.501424 | 3.2:+92826471 | None:intergenic |
| ACCAAACTTCGTCAATTACC+TGG | 0.502006 | 3.2:-92827467 | MS.gene68765:CDS |
| AACAAGTGTTGGCGGTTGAA+TGG | 0.508842 | 3.2:+92827825 | None:intergenic |
| CGGTTCGTGCTGTTCTTGAA+GGG | 0.509292 | 3.2:-92826644 | MS.gene68765:CDS |
| TCTGTGGACGGTGGATTGAA+TGG | 0.513186 | 3.2:-92826264 | MS.gene68765:CDS |
| AAACGGTAACCTGCAACAAA+AGG | 0.514148 | 3.2:+92827380 | None:intergenic |
| TCTGTTATGCTTGTTTCACT+GGG | 0.514410 | 3.2:-92826341 | MS.gene68765:CDS |
| TATGAAAGAGAGGTTTATCC+TGG | 0.522853 | 3.2:-92827023 | MS.gene68765:CDS |
| CTTCAACACCGTGGCCAAGA+AGG | 0.526221 | 3.2:-92827572 | MS.gene68765:CDS |
| ACCAAAGGTCGAAAACCAAA+AGG | 0.526636 | 3.2:+92827119 | None:intergenic |
| TAGTGGCGATGTTTGTGAAT+GGG | 0.534660 | 3.2:+92827693 | None:intergenic |
| TTTGGTGTCGTTGAAAACTT+CGG | 0.543746 | 3.2:+92827484 | None:intergenic |
| TGGGTCTTGTTATTATGGTG+TGG | 0.544696 | 3.2:-92826499 | MS.gene68765:CDS |
| TCTTGAAGGGAAAAGGGTTG+TGG | 0.550569 | 3.2:-92826631 | MS.gene68765:CDS |
| GTGAGGTTGTTAAAAGAAGC+TGG | 0.552217 | 3.2:-92826564 | MS.gene68765:CDS |
| CTTCTTCTTCCCATAACCAA+AGG | 0.554261 | 3.2:+92827104 | None:intergenic |
| CAACACCAACGGAACCAAAA+CGG | 0.557562 | 3.2:+92827363 | None:intergenic |
| GTTGTAAGAATGAGAAGGTG+AGG | 0.561350 | 3.2:+92827760 | None:intergenic |
| CAACACCGGTAACAGTTTGA+AGG | 0.562556 | 3.2:+92827516 | None:intergenic |
| TCCACAACCACAATTTCACC+AGG | 0.563343 | 3.2:+92827005 | None:intergenic |
| GGTTTATCCTGGTGAAATTG+TGG | 0.564016 | 3.2:-92827012 | MS.gene68765:CDS |
| TTTCTTGAGAAATGAACTTG+AGG | 0.564667 | 3.2:-92827312 | MS.gene68765:CDS |
| CACCGTGGCCAAGAAGGTGC+TGG | 0.566006 | 3.2:-92827566 | MS.gene68765:CDS |
| TTCGGAAACGAGGCCAACAC+CGG | 0.567067 | 3.2:+92827502 | None:intergenic |
| AAATCTCTAATCTTCTGTGA+TGG | 0.569057 | 3.2:+92826690 | None:intergenic |
| TAACAAGACCCAATAATTGG+TGG | 0.569913 | 3.2:+92826510 | None:intergenic |
| TGTGAAGTTGAAGCTTTCAC+CGG | 0.573769 | 3.2:-92826664 | MS.gene68765:CDS |
| CGAAGCTACTTATGAAAGAG+AGG | 0.573913 | 3.2:-92827033 | MS.gene68765:CDS |
| TTAGTGGCGATGTTTGTGAA+TGG | 0.579736 | 3.2:+92827692 | None:intergenic |
| CGTTGAAAACTTCGGAAACG+AGG | 0.581432 | 3.2:+92827492 | None:intergenic |
| GTTGAAGAGCGTGGAGAGCG+AGG | 0.582022 | 3.2:+92827588 | None:intergenic |
| GAAAAGCCTCGTGAAGAATG+TGG | 0.582099 | 3.2:-92827656 | MS.gene68765:CDS |
| ATTGTCCTGCGGTTGAGTAA+CGG | 0.585495 | 3.2:+92827423 | None:intergenic |
| ATTGGAGGTGATTCTGTGGA+CGG | 0.593464 | 3.2:-92826276 | MS.gene68765:CDS |
| TACCAGCACCTTCTTGGCCA+CGG | 0.594795 | 3.2:+92827564 | None:intergenic |
| GGCGGTTGAATGGTTGAGAG+AGG | 0.597439 | 3.2:+92827835 | None:intergenic |
| GTTATGGGAAGAAGAAGTAA+CGG | 0.598346 | 3.2:-92827098 | MS.gene68765:CDS |
| TTGATTAGGTCACACTATGT+TGG | 0.599304 | 3.2:-92826729 | MS.gene68765:CDS |
| ACGGACATGACCGATGGCTA+AGG | 0.601051 | 3.2:+92827442 | None:intergenic |
| GTTGATGATTCAATTGTGAG+AGG | 0.610184 | 3.2:-92826606 | MS.gene68765:CDS |
| TTACCTGGAACCTTAGCCAT+CGG | 0.612138 | 3.2:-92827452 | MS.gene68765:CDS |
| CATGTCCGTTACTCAACCGC+AGG | 0.612516 | 3.2:-92827428 | MS.gene68765:CDS |
| TTGTAGTTGTAAGAATGAGA+AGG | 0.631544 | 3.2:+92827755 | None:intergenic |
| ACCATTATGAGCAACACCAA+CGG | 0.634502 | 3.2:+92827352 | None:intergenic |
| GAGGATTGGAGGTGATTCTG+TGG | 0.636067 | 3.2:-92826280 | MS.gene68765:CDS |
| CAACATCATCTAAAATTGTG+AGG | 0.642187 | 3.2:-92826581 | MS.gene68765:CDS |
| GGACGGTGGATTGAATGGAT+CGG | 0.653459 | 3.2:-92826259 | MS.gene68765:CDS |
| GGAGGTGATTCTGTGGACGG+TGG | 0.657786 | 3.2:-92826273 | MS.gene68765:CDS |
| TGAGTAACGGACATGACCGA+TGG | 0.661499 | 3.2:+92827436 | None:intergenic |
| AACTTCTTCAAACTATCCAT+AGG | 0.662605 | 3.2:+92826387 | None:intergenic |
| ATTGTGGTTGTGGATAAAAG+TGG | 0.668729 | 3.2:-92826996 | MS.gene68765:CDS |
| GGCCACGGTGTTGAAGAGCG+TGG | 0.680312 | 3.2:+92827579 | None:intergenic |
| GTGCTAAAGAAGTTCACATG+AGG | 0.680748 | 3.2:-92826542 | MS.gene68765:CDS |
| TTTGAGCATGGATTGTCCTG+CGG | 0.688776 | 3.2:+92827412 | None:intergenic |
| ACAATGCCACATTCTTCACG+AGG | 0.693568 | 3.2:+92827650 | None:intergenic |
| CTCCACGCTCTTCAACACCG+TGG | 0.743272 | 3.2:-92827581 | MS.gene68765:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTCAAAAATACATTGTTT+TGG | + | chr3.2:92827181-92827200 | None:intergenic | 20.0% |
| !!! | TTTTTAACTTTAAGTTCAGT+AGG | + | chr3.2:92827817-92827836 | None:intergenic | 20.0% |
| ! | CTGAACTTAAAGTTAAAAAG+AGG | - | chr3.2:92827818-92827837 | MS.gene68765:CDS | 25.0% |
| ! | CTTAAAGTTAAAAAGAGGAT+TGG | - | chr3.2:92827823-92827842 | MS.gene68765:CDS | 25.0% |
| ! | TAATAACAAGACCCAATAAT+TGG | + | chr3.2:92827613-92827632 | None:intergenic | 25.0% |
| ! | TATGAATCAAGAAGATTGTT+TGG | - | chr3.2:92827247-92827266 | MS.gene68765:CDS | 25.0% |
| !! | AAGATTGTTTGGTGAAATAT+TGG | - | chr3.2:92827258-92827277 | MS.gene68765:CDS | 25.0% |
| !!! | AAAATACATTGTTTTGGTTC+TGG | + | chr3.2:92827175-92827194 | None:intergenic | 25.0% |
| !!! | ATTATTGGGTCTTGTTATTA+TGG | - | chr3.2:92827613-92827632 | MS.gene68765:CDS | 25.0% |
| AAAGTTAAAAAGAGGATTGG+AGG | - | chr3.2:92827826-92827845 | MS.gene68765:CDS | 30.0% | |
| AAATCTCTAATCTTCTGTGA+TGG | + | chr3.2:92827430-92827449 | None:intergenic | 30.0% | |
| AACTTCTTCAAACTATCCAT+AGG | + | chr3.2:92827733-92827752 | None:intergenic | 30.0% | |
| ATAACTACATCACAATCAAC+AGG | + | chr3.2:92827295-92827314 | None:intergenic | 30.0% | |
| ATCTTCATCTCTTTCTGATT+TGG | + | chr3.2:92827895-92827914 | None:intergenic | 30.0% | |
| CAAGTTCATTTCTCAAGAAA+CGG | + | chr3.2:92826805-92826824 | None:intergenic | 30.0% | |
| CAGAAAGAGATGAAGATTAT+TGG | - | chr3.2:92827898-92827917 | MS.gene68765:CDS | 30.0% | |
| GAAGAAGAAAAAGAGAGTTT+AGG | + | chr3.2:92826263-92826282 | None:intergenic | 30.0% | |
| GATAGTTTGAAGAAGTTGTT+GGG | - | chr3.2:92827736-92827755 | MS.gene68765:CDS | 30.0% | |
| GCTGAGATTAAGGAATTTAT+TGG | - | chr3.2:92827685-92827704 | MS.gene68765:CDS | 30.0% | |
| TCAACAATTCTCGCTATAAA+AGG | + | chr3.2:92826905-92826924 | None:intergenic | 30.0% | |
| TCTTCATCTCTTTCTGATTT+GGG | + | chr3.2:92827894-92827913 | None:intergenic | 30.0% | |
| TTCCCAAATACAACAGAATT+GGG | + | chr3.2:92827220-92827239 | None:intergenic | 30.0% | |
| TTGTAGTTGTAAGAATGAGA+AGG | + | chr3.2:92826365-92826384 | None:intergenic | 30.0% | |
| TTTCCCAAATACAACAGAAT+TGG | + | chr3.2:92827221-92827240 | None:intergenic | 30.0% | |
| TTTCTTGAGAAATGAACTTG+AGG | - | chr3.2:92826805-92826824 | MS.gene68765:CDS | 30.0% | |
| ! | CAACATCATCTAAAATTGTG+AGG | - | chr3.2:92827536-92827555 | MS.gene68765:CDS | 30.0% |
| ! | TCACAGAAGATTAGAGATTT+TGG | - | chr3.2:92827430-92827449 | MS.gene68765:CDS | 30.0% |
| AAAGTCCTTCAAACTGTTAC+CGG | - | chr3.2:92826596-92826615 | MS.gene68765:CDS | 35.0% | |
| AATGAGTGTAGCTGAGATTA+AGG | - | chr3.2:92827675-92827694 | MS.gene68765:CDS | 35.0% | |
| AGAAATGAACTTGAGGAATC+TGG | - | chr3.2:92826812-92826831 | MS.gene68765:CDS | 35.0% | |
| ATTGCATGTCCACCAATTAT+TGG | - | chr3.2:92827598-92827617 | MS.gene68765:CDS | 35.0% | |
| ATTGTGGTTGTGGATAAAAG+TGG | - | chr3.2:92827121-92827140 | MS.gene68765:CDS | 35.0% | |
| CTAATCAAACCCTGTTGAAA+AGG | + | chr3.2:92827376-92827395 | None:intergenic | 35.0% | |
| GAAGCGTGTGAAAAAGTTAA+AGG | - | chr3.2:92826923-92826942 | MS.gene68765:CDS | 35.0% | |
| GGATAGTTTGAAGAAGTTGT+TGG | - | chr3.2:92827735-92827754 | MS.gene68765:CDS | 35.0% | |
| GTTATGGGAAGAAGAAGTAA+CGG | - | chr3.2:92827019-92827038 | MS.gene68765:CDS | 35.0% | |
| GTTGTGGAAAAAACAAGTGT+TGG | + | chr3.2:92826306-92826325 | None:intergenic | 35.0% | |
| TAACAAGACCCAATAATTGG+TGG | + | chr3.2:92827610-92827629 | None:intergenic | 35.0% | |
| TATGAAAGAGAGGTTTATCC+TGG | - | chr3.2:92827094-92827113 | MS.gene68765:CDS | 35.0% | |
| TCTGTTATGCTTGTTTCACT+GGG | - | chr3.2:92827776-92827795 | MS.gene68765:CDS | 35.0% | |
| TGCCCAATTCTGTTGTATTT+GGG | - | chr3.2:92827215-92827234 | MS.gene68765:CDS | 35.0% | |
| TTAAGTTCAGTAGGTTCAAC+AGG | + | chr3.2:92827808-92827827 | None:intergenic | 35.0% | |
| TTCTGTTATGCTTGTTTCAC+TGG | - | chr3.2:92827775-92827794 | MS.gene68765:CDS | 35.0% | |
| TTGATTAGGTCACACTATGT+TGG | - | chr3.2:92827388-92827407 | MS.gene68765:CDS | 35.0% | |
| TTGCATGTCCACCAATTATT+GGG | - | chr3.2:92827599-92827618 | MS.gene68765:CDS | 35.0% | |
| TTGCCCAATTCTGTTGTATT+TGG | - | chr3.2:92827214-92827233 | MS.gene68765:CDS | 35.0% | |
| ! | CTTTTCAACAGGGTTTGATT+AGG | - | chr3.2:92827374-92827393 | MS.gene68765:CDS | 35.0% |
| ! | TGAATGGGAATGTGTTGTTA+GGG | + | chr3.2:92826412-92826431 | None:intergenic | 35.0% |
| ! | TGTGTTGTTAGGGTTGTTAT+TGG | + | chr3.2:92826402-92826421 | None:intergenic | 35.0% |
| !! | AAGAGAGTTTAGGTTTGTTG+AGG | + | chr3.2:92826253-92826272 | None:intergenic | 35.0% |
| !! | AGAGAGTTTAGGTTTGTTGA+GGG | + | chr3.2:92826252-92826271 | None:intergenic | 35.0% |
| !! | GTTGATGATTCAATTGTGAG+AGG | - | chr3.2:92827511-92827530 | MS.gene68765:CDS | 35.0% |
| !! | TTCACTTGCTTTTCTACCTA+TGG | - | chr3.2:92827714-92827733 | MS.gene68765:CDS | 35.0% |
| !! | TTTGGTGTCGTTGAAAACTT+CGG | + | chr3.2:92826636-92826655 | None:intergenic | 35.0% |
| !!! | TTGAGAGAAGAGTTTTGTTG+TGG | + | chr3.2:92826322-92826341 | None:intergenic | 35.0% |
| AAACGGTAACCTGCAACAAA+AGG | + | chr3.2:92826740-92826759 | None:intergenic | 40.0% | |
| ACCAAACTTCGTCAATTACC+TGG | - | chr3.2:92826650-92826669 | MS.gene68765:CDS | 40.0% | |
| ACCAAAGGTCGAAAACCAAA+AGG | + | chr3.2:92827001-92827020 | None:intergenic | 40.0% | |
| ACCATTATGAGCAACACCAA+CGG | + | chr3.2:92826768-92826787 | None:intergenic | 40.0% | |
| CGAAGCTACTTATGAAAGAG+AGG | - | chr3.2:92827084-92827103 | MS.gene68765:CDS | 40.0% | |
| CTTCTTCTTCCCATAACCAA+AGG | + | chr3.2:92827016-92827035 | None:intergenic | 40.0% | |
| GATATCAACTCTTCAGAGCT+AGG | + | chr3.2:92827649-92827668 | None:intergenic | 40.0% | |
| GGTTTATCCTGGTGAAATTG+TGG | - | chr3.2:92827105-92827124 | MS.gene68765:CDS | 40.0% | |
| GTGAGGTTGTTAAAAGAAGC+TGG | - | chr3.2:92827553-92827572 | MS.gene68765:CDS | 40.0% | |
| GTGCTAAAGAAGTTCACATG+AGG | - | chr3.2:92827575-92827594 | MS.gene68765:CDS | 40.0% | |
| GTTATAGCTGTTCCTGATTC+TGG | - | chr3.2:92827310-92827329 | MS.gene68765:CDS | 40.0% | |
| GTTGTAAGAATGAGAAGGTG+AGG | + | chr3.2:92826360-92826379 | None:intergenic | 40.0% | |
| TAGTGGCGATGTTTGTGAAT+GGG | + | chr3.2:92826427-92826446 | None:intergenic | 40.0% | |
| TCCAGGTAATTGACGAAGTT+TGG | + | chr3.2:92826654-92826673 | None:intergenic | 40.0% | |
| TGCTGTTCTTGAAGGGAAAA+GGG | - | chr3.2:92827480-92827499 | MS.gene68765:CDS | 40.0% | |
| TGTGAAGTTGAAGCTTTCAC+CGG | - | chr3.2:92827453-92827472 | MS.gene68765:CDS | 40.0% | |
| TGTGGCATTGTTGGTATCTA+CGG | - | chr3.2:92826479-92826498 | MS.gene68765:CDS | 40.0% | |
| TTAGTGGCGATGTTTGTGAA+TGG | + | chr3.2:92826428-92826447 | None:intergenic | 40.0% | |
| TTCGTCGTCATCATCATTAG+TGG | + | chr3.2:92826444-92826463 | None:intergenic | 40.0% | |
| ! | AATGAGAAGGTGAGGTTTTG+GGG | + | chr3.2:92826352-92826371 | None:intergenic | 40.0% |
| ! | AGAATGAGAAGGTGAGGTTT+TGG | + | chr3.2:92826354-92826373 | None:intergenic | 40.0% |
| ! | GAATGAGAAGGTGAGGTTTT+GGG | + | chr3.2:92826353-92826372 | None:intergenic | 40.0% |
| ! | GGTTTTCGACCTTTGGTTAT+GGG | - | chr3.2:92827004-92827023 | MS.gene68765:CDS | 40.0% |
| ! | GTGAATGGGAATGTGTTGTT+AGG | + | chr3.2:92826413-92826432 | None:intergenic | 40.0% |
| ! | TGGTTTTCGACCTTTGGTTA+TGG | - | chr3.2:92827003-92827022 | MS.gene68765:CDS | 40.0% |
| ! | TTTGTTGCAGGTTACCGTTT+TGG | - | chr3.2:92826740-92826759 | MS.gene68765:CDS | 40.0% |
| !! | GTGGAAAAAACAAGTGTTGG+CGG | + | chr3.2:92826303-92826322 | None:intergenic | 40.0% |
| !! | TGGGTCTTGTTATTATGGTG+TGG | - | chr3.2:92827618-92827637 | MS.gene68765:CDS | 40.0% |
| !! | TTTAGGTTTGTTGAGGGAAG+AGG | + | chr3.2:92826246-92826265 | None:intergenic | 40.0% |
| !!! | CGGTTCTGTTGTTTTTGCTT+CGG | - | chr3.2:92827039-92827058 | MS.gene68765:CDS | 40.0% |
| !!! | TCCTTTTGGTTTTCGACCTT+TGG | - | chr3.2:92826997-92827016 | MS.gene68765:CDS | 40.0% |
| ACAATGCCACATTCTTCACG+AGG | + | chr3.2:92826470-92826489 | None:intergenic | 45.0% | |
| ATTGGAGGTGATTCTGTGGA+CGG | - | chr3.2:92827841-92827860 | MS.gene68765:CDS | 45.0% | |
| ATTGTCCTGCGGTTGAGTAA+CGG | + | chr3.2:92826697-92826716 | None:intergenic | 45.0% | |
| CAACACCAACGGAACCAAAA+CGG | + | chr3.2:92826757-92826776 | None:intergenic | 45.0% | |
| CAACACCGGTAACAGTTTGA+AGG | + | chr3.2:92826604-92826623 | None:intergenic | 45.0% | |
| CGTGAAGAATGTGGCATTGT+TGG | - | chr3.2:92826470-92826489 | MS.gene68765:CDS | 45.0% | |
| CGTTGAAAACTTCGGAAACG+AGG | + | chr3.2:92826628-92826647 | None:intergenic | 45.0% | |
| CTTCAAACTGTTACCGGTGT+TGG | - | chr3.2:92826602-92826621 | MS.gene68765:CDS | 45.0% | |
| CTTGGTTATGCTGCAAAAGC+TGG | - | chr3.2:92827346-92827365 | MS.gene68765:CDS | 45.0% | |
| GAAAAGCCTCGTGAAGAATG+TGG | - | chr3.2:92826461-92826480 | MS.gene68765:CDS | 45.0% | |
| TAACGATACCAGCACCTTCT+TGG | + | chr3.2:92826562-92826581 | None:intergenic | 45.0% | |
| TAGCATAGACGTGAAGCTTC+TGG | + | chr3.2:92826509-92826528 | None:intergenic | 45.0% | |
| TCCACAACCACAATTTCACC+AGG | + | chr3.2:92827115-92827134 | None:intergenic | 45.0% | |
| TCCTGGTGAAATTGTGGTTG+TGG | - | chr3.2:92827111-92827130 | MS.gene68765:CDS | 45.0% | |
| TCTTGAAGGGAAAAGGGTTG+TGG | - | chr3.2:92827486-92827505 | MS.gene68765:CDS | 45.0% | |
| TTACCTGGAACCTTAGCCAT+CGG | - | chr3.2:92826665-92826684 | MS.gene68765:CDS | 45.0% | |
| ! | AACGTGCAACCTTTTGTTGC+AGG | - | chr3.2:92826728-92826747 | MS.gene68765:CDS | 45.0% |
| ! | AGCTGGTGTTCCTTTTCAAC+AGG | - | chr3.2:92827363-92827382 | MS.gene68765:CDS | 45.0% |
| ! | GCTGGTGTTCCTTTTCAACA+GGG | - | chr3.2:92827364-92827383 | MS.gene68765:CDS | 45.0% |
| ! | GTGCTGTTCTTGAAGGGAAA+AGG | - | chr3.2:92827479-92827498 | MS.gene68765:CDS | 45.0% |
| ! | GTTGCTGTCAGAGATCCTTT+TGG | - | chr3.2:92826983-92827002 | MS.gene68765:CDS | 45.0% |
| ! | TTTGAGCATGGATTGTCCTG+CGG | + | chr3.2:92826708-92826727 | None:intergenic | 45.0% |
| !! | AACAAGTGTTGGCGGTTGAA+TGG | + | chr3.2:92826295-92826314 | None:intergenic | 45.0% |
| !! | AGGTTGCACGTTTTTGAGCA+TGG | + | chr3.2:92826720-92826739 | None:intergenic | 45.0% |
| !! | TCCGTTGGTGTTGCTCATAA+TGG | - | chr3.2:92826764-92826783 | MS.gene68765:CDS | 45.0% |
| CCTTCAAGAACAGCACGAAC+CGG | + | chr3.2:92827475-92827494 | None:intergenic | 50.0% | |
| GAGGATTGGAGGTGATTCTG+TGG | - | chr3.2:92827837-92827856 | MS.gene68765:CDS | 50.0% | |
| GCAGCAACAACACCAGAATC+AGG | + | chr3.2:92827325-92827344 | None:intergenic | 50.0% | |
| GTTGAGGGAAGAGGAAGAGA+GGG | + | chr3.2:92826237-92826256 | None:intergenic | 50.0% | |
| TGTTGAGGGAAGAGGAAGAG+AGG | + | chr3.2:92826238-92826257 | None:intergenic | 50.0% | |
| ! | CGGTTCGTGCTGTTCTTGAA+GGG | - | chr3.2:92827473-92827492 | MS.gene68765:CDS | 50.0% |
| !! | GGACGGTGGATTGAATGGAT+CGG | - | chr3.2:92827858-92827877 | MS.gene68765:CDS | 50.0% |
| !! | TCTGGTGTTGTTGCTGCACT+TGG | - | chr3.2:92827328-92827347 | MS.gene68765:CDS | 50.0% |
| !! | TCTGTGGACGGTGGATTGAA+TGG | - | chr3.2:92827853-92827872 | MS.gene68765:CDS | 50.0% |
| !! | TGAGTAACGGACATGACCGA+TGG | + | chr3.2:92826684-92826703 | None:intergenic | 50.0% |
| !!! | GGTTACCGTTTTGGTTCCGT+TGG | - | chr3.2:92826749-92826768 | MS.gene68765:CDS | 50.0% |
| ACGGACATGACCGATGGCTA+AGG | + | chr3.2:92826678-92826697 | None:intergenic | 55.0% | |
| CATGTCCGTTACTCAACCGC+AGG | - | chr3.2:92826689-92826708 | MS.gene68765:CDS | 55.0% | |
| CTTCAACACCGTGGCCAAGA+AGG | - | chr3.2:92826545-92826564 | MS.gene68765:CDS | 55.0% | |
| GGCGGTTGAATGGTTGAGAG+AGG | + | chr3.2:92826285-92826304 | None:intergenic | 55.0% | |
| TACCAGCACCTTCTTGGCCA+CGG | + | chr3.2:92826556-92826575 | None:intergenic | 55.0% | |
| TGACCGATGGCTAAGGTTCC+AGG | + | chr3.2:92826671-92826690 | None:intergenic | 55.0% | |
| TTCGGAAACGAGGCCAACAC+CGG | + | chr3.2:92826618-92826637 | None:intergenic | 55.0% | |
| ! | CCGGTTCGTGCTGTTCTTGA+AGG | - | chr3.2:92827472-92827491 | MS.gene68765:CDS | 55.0% |
| CTCCACGCTCTTCAACACCG+TGG | - | chr3.2:92826536-92826555 | MS.gene68765:CDS | 60.0% | |
| GGAGGTGATTCTGTGGACGG+TGG | - | chr3.2:92827844-92827863 | MS.gene68765:CDS | 60.0% | |
| ! | GTTGAAGAGCGTGGAGAGCG+AGG | + | chr3.2:92826532-92826551 | None:intergenic | 60.0% |
| ! | CACCGTGGCCAAGAAGGTGC+TGG | - | chr3.2:92826551-92826570 | MS.gene68765:CDS | 65.0% |
| ! | GGCCACGGTGTTGAAGAGCG+TGG | + | chr3.2:92826541-92826560 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 92826212 | 92827927 | 92826212 | ID=MS.gene68765 |
| chr3.2 | mRNA | 92826212 | 92827927 | 92826212 | ID=MS.gene68765.t1;Parent=MS.gene68765 |
| chr3.2 | exon | 92826212 | 92827927 | 92826212 | ID=MS.gene68765.t1.exon1;Parent=MS.gene68765.t1 |
| chr3.2 | CDS | 92826212 | 92827927 | 92826212 | ID=cds.MS.gene68765.t1;Parent=MS.gene68765.t1 |
| Gene Sequence |
| Protein sequence |
