Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69779.t1 | XP_003590981.1 | 98.5 | 548 | 8 | 0 | 2 | 549 | 13 | 560 | 2.60E-296 | 1027.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69779.t1 | G7I6T7 | 98.5 | 548 | 8 | 0 | 2 | 549 | 13 | 560 | 1.9e-296 | 1027.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene69779 | 0.800299 | 1.54E-48 | -1.69E-46 |
| MS.gene049983 | MS.gene69779 | 0.802485 | 5.49E-49 | -1.69E-46 |
| MS.gene050559 | MS.gene69779 | 0.803911 | 2.78E-49 | -1.69E-46 |
| MS.gene050562 | MS.gene69779 | 0.803714 | 3.06E-49 | -1.69E-46 |
| MS.gene051209 | MS.gene69779 | 0.819915 | 9.04E-53 | -1.69E-46 |
| MS.gene053575 | MS.gene69779 | 0.800727 | 1.26E-48 | -1.69E-46 |
| MS.gene054892 | MS.gene69779 | 0.809559 | 1.78E-50 | -1.69E-46 |
| MS.gene054893 | MS.gene69779 | 0.813011 | 3.18E-51 | -1.69E-46 |
| MS.gene055724 | MS.gene69779 | 0.800404 | 1.46E-48 | -1.69E-46 |
| MS.gene056363 | MS.gene69779 | 0.815422 | 9.32E-52 | -1.69E-46 |
| MS.gene056519 | MS.gene69779 | 0.832148 | 1.11E-55 | -1.69E-46 |
| MS.gene05686 | MS.gene69779 | 0.867427 | 1.38E-65 | -1.69E-46 |
| MS.gene056973 | MS.gene69779 | 0.822652 | 2.11E-53 | -1.69E-46 |
| MS.gene057174 | MS.gene69779 | 0.866516 | 2.69E-65 | -1.69E-46 |
| MS.gene058781 | MS.gene69779 | 0.80976 | 1.61E-50 | -1.69E-46 |
| MS.gene059634 | MS.gene69779 | 0.854149 | 1.49E-61 | -1.69E-46 |
| MS.gene060522 | MS.gene69779 | 0.845927 | 2.99E-59 | -1.69E-46 |
| MS.gene060933 | MS.gene69779 | 0.849506 | 3.10E-60 | -1.69E-46 |
| MS.gene060935 | MS.gene69779 | 0.829274 | 5.64E-55 | -1.69E-46 |
| MS.gene060937 | MS.gene69779 | 0.839564 | 1.47E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 138 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTCATCAATGACACTTTA+AGG | 0.107306 | 1.1:-59680750 | None:intergenic |
| TAAACAAGTTTGAGAAAGTT+TGG | 0.235719 | 1.1:+59679801 | MS.gene69779:CDS |
| CTGAGCACAGTGGAGGTAAA+TGG | 0.247800 | 1.1:+59680869 | MS.gene69779:CDS |
| TTATTTCCAACAGAGCTTTC+TGG | 0.254169 | 1.1:+59681243 | MS.gene69779:CDS |
| CACTTAATTACTCGTTAATA+TGG | 0.260129 | 1.1:+59680023 | MS.gene69779:CDS |
| ATTCGATTTGGAGTTTATTA+AGG | 0.263278 | 1.1:+59680900 | MS.gene69779:CDS |
| AGCCAATTGTCCTTCTCCTT+TGG | 0.307063 | 1.1:-59681285 | None:intergenic |
| GCGAACTCCTATTCCAAGTT+TGG | 0.314359 | 1.1:-59681001 | None:intergenic |
| TGTCTTGATGAATAAACTAT+TGG | 0.322222 | 1.1:-59680931 | None:intergenic |
| ACAGAAAACCTAACAAATAT+TGG | 0.329471 | 1.1:-59681204 | None:intergenic |
| GATATAATGATGGTGCGTTT+TGG | 0.329648 | 1.1:+59680575 | MS.gene69779:CDS |
| CATCGAACTTCTTCAACTTT+CGG | 0.340671 | 1.1:-59680145 | None:intergenic |
| ATGGGTTAATGCATTCGATT+TGG | 0.345620 | 1.1:+59680888 | MS.gene69779:CDS |
| ATGATGAATGTGTTTACTTT+TGG | 0.348745 | 1.1:+59680059 | MS.gene69779:CDS |
| TCCTTCTCCTTTGGACCAGT+TGG | 0.349557 | 1.1:-59681276 | None:intergenic |
| ACATGCTTCCAATATTTGTT+AGG | 0.353415 | 1.1:+59681196 | MS.gene69779:CDS |
| TCTTCAACTTTCGGTTCATC+TGG | 0.355411 | 1.1:-59680136 | None:intergenic |
| AATGACACTTTAAGGGTTGC+AGG | 0.360391 | 1.1:-59680742 | None:intergenic |
| CATGCTCTCATTGAGCATTA+CGG | 0.360621 | 1.1:+59680409 | MS.gene69779:CDS |
| GGAACAATCAGCTTGAGATT+TGG | 0.364813 | 1.1:-59679972 | None:intergenic |
| GTTCATCAATGACACTTTAA+GGG | 0.377575 | 1.1:-59680749 | None:intergenic |
| GGATCAGAGTCAAAGAATTC+TGG | 0.378539 | 1.1:-59679192 | None:intergenic |
| TCTGGTGAGGAGGGGCCAAC+TGG | 0.379305 | 1.1:+59681261 | MS.gene69779:CDS |
| ATGCTCTCATTGAGCATTAC+GGG | 0.380356 | 1.1:+59680410 | MS.gene69779:CDS |
| TGGAGATGCACAAATTCTAA+TGG | 0.385168 | 1.1:+59679821 | MS.gene69779:CDS |
| CTGTTGGAAATAATTCAAAA+AGG | 0.390774 | 1.1:-59681233 | None:intergenic |
| AGAGGTGAAGGAAGAGAAAA+GGG | 0.395917 | 1.1:-59679219 | None:intergenic |
| AAGAGGTGAAGGAAGAGAAA+AGG | 0.400057 | 1.1:-59679220 | None:intergenic |
| TCATGCAGGGACTTACCTTC+AGG | 0.415789 | 1.1:+59680972 | MS.gene69779:CDS |
| AACTTTCGGTTCATCTGGAC+TGG | 0.420215 | 1.1:-59680131 | None:intergenic |
| AGGGTTGCAGGTCCATTGAA+TGG | 0.426014 | 1.1:-59680730 | None:intergenic |
| TCCTCGCAACGGCTGATCAT+TGG | 0.426252 | 1.1:-59679921 | None:intergenic |
| GTTCATGTAAAACCAGCATT+AGG | 0.426763 | 1.1:+59680670 | MS.gene69779:CDS |
| CCGACGGCTTTATAACCCTT+TGG | 0.428360 | 1.1:-59680094 | None:intergenic |
| CTTCAGGGATCATCCAAACT+TGG | 0.432488 | 1.1:+59680988 | MS.gene69779:CDS |
| CGGTGAACATGTCGGTGATT+GGG | 0.432674 | 1.1:+59680789 | MS.gene69779:CDS |
| TCGGTGAACATGTCGGTGAT+TGG | 0.434338 | 1.1:+59680788 | MS.gene69779:CDS |
| CATATTAACGAGTAATTAAG+TGG | 0.438102 | 1.1:-59680022 | None:intergenic |
| GCAACTTCACCGGAGAGCTT+TGG | 0.443367 | 1.1:+59680833 | MS.gene69779:CDS |
| TTATAACCCTTTGGAGGGTT+AGG | 0.448233 | 1.1:-59680085 | None:intergenic |
| GGATCATCCAAACTTGGAAT+AGG | 0.450282 | 1.1:+59680994 | MS.gene69779:CDS |
| GACGGCATGTATTTCTCATC+AGG | 0.451359 | 1.1:-59680451 | None:intergenic |
| CCCAAGGGATATTCTTCCAC+CGG | 0.460403 | 1.1:-59679759 | None:intergenic |
| TCCTCACCAGAAAGCTCTGT+TGG | 0.461764 | 1.1:-59681249 | None:intergenic |
| GCATGAATCTGGTTGAGATT+CGG | 0.468325 | 1.1:-59680391 | None:intergenic |
| AATACACAACCTTGCGATAG+AGG | 0.468770 | 1.1:+59680253 | MS.gene69779:CDS |
| CCAAGACAGGAAAATCCATC+TGG | 0.469039 | 1.1:-59679884 | None:intergenic |
| GAGGACACGTTCTTGTCGCT+CGG | 0.471944 | 1.1:+59679939 | MS.gene69779:CDS |
| TGAGCACAGTGGAGGTAAAT+GGG | 0.475593 | 1.1:+59680870 | MS.gene69779:CDS |
| CTTTACTGATATTGCAATGT+GGG | 0.475927 | 1.1:+59680699 | MS.gene69779:CDS |
| GAAGGAAGAGAAAAGGGAAG+TGG | 0.478043 | 1.1:-59679213 | None:intergenic |
| TGCGAGAAATAATCTTAAGA+AGG | 0.480833 | 1.1:+59680621 | MS.gene69779:CDS |
| ACGGCTTTATAACCCTTTGG+AGG | 0.486012 | 1.1:-59680091 | None:intergenic |
| ATTGTTGCTGCCGAGTATCT+TGG | 0.490221 | 1.1:+59681075 | MS.gene69779:CDS |
| GCTCAATGAGAGCATGAATC+TGG | 0.490735 | 1.1:-59680402 | None:intergenic |
| GTCCAAAGGAGAAGGACAAT+TGG | 0.490950 | 1.1:+59681283 | MS.gene69779:CDS |
| CTCACAAACTTCTGTTAGAT+CGG | 0.493970 | 1.1:-59680176 | None:intergenic |
| GGGTTGCAGGTCCATTGAAT+GGG | 0.500640 | 1.1:-59680729 | None:intergenic |
| GCCGGTGGAAGAATATCCCT+TGG | 0.503378 | 1.1:+59679758 | MS.gene69779:CDS |
| CTACTTTGATTCTGAACAAG+TGG | 0.505519 | 1.1:+59680321 | MS.gene69779:CDS |
| CGGTGAAGTTGCTCACGCGA+AGG | 0.508371 | 1.1:-59680822 | None:intergenic |
| TTGTTCCGAGTCAGAATCCT+TGG | 0.510563 | 1.1:+59679988 | MS.gene69779:CDS |
| CATGCTAGCTATCCTCATGC+AGG | 0.510869 | 1.1:+59680958 | MS.gene69779:CDS |
| CCTTGTGGCCATTGTGGAAG+AGG | 0.512962 | 1.1:-59679237 | None:intergenic |
| CCACATTGCAATATCAGTAA+AGG | 0.513990 | 1.1:-59680698 | None:intergenic |
| TTGGTTGCCTAACCCTCCAA+AGG | 0.523651 | 1.1:+59680078 | MS.gene69779:CDS |
| AATTCTAATGGAAAGGCACT+AGG | 0.529623 | 1.1:+59679833 | MS.gene69779:CDS |
| CATGCAGGGACTTACCTTCA+GGG | 0.530671 | 1.1:+59680973 | MS.gene69779:CDS |
| AACAGAGCTTTCTGGTGAGG+AGG | 0.540070 | 1.1:+59681251 | MS.gene69779:CDS |
| GTATACTGCGGGTAATGCAA+AGG | 0.543009 | 1.1:+59680510 | MS.gene69779:CDS |
| ACAGAGCTTTCTGGTGAGGA+GGG | 0.543440 | 1.1:+59681252 | MS.gene69779:CDS |
| GTAAAGGCTCCTCCTAATGC+TGG | 0.544725 | 1.1:-59680682 | None:intergenic |
| AGGACACGTTCTTGTCGCTC+GGG | 0.549143 | 1.1:+59679940 | MS.gene69779:CDS |
| CCGGTGGAAGAATATCCCTT+GGG | 0.549609 | 1.1:+59679759 | MS.gene69779:CDS |
| AGACCTTTGGAGATTCCAGA+TGG | 0.551683 | 1.1:+59679869 | MS.gene69779:CDS |
| TTCCTTCACCTCTTCCACAA+TGG | 0.552183 | 1.1:+59679229 | MS.gene69779:CDS |
| GACTCCATCACCAAGATACT+CGG | 0.556847 | 1.1:-59681085 | None:intergenic |
| TTACTCGTTAATATGGTGCA+TGG | 0.557123 | 1.1:+59680030 | MS.gene69779:CDS |
| CGGCTTTATAACCCTTTGGA+GGG | 0.557691 | 1.1:-59680090 | None:intergenic |
| GGTGAAGTTGCTCACGCGAA+GGG | 0.560176 | 1.1:-59680821 | None:intergenic |
| ATTATTTCTCGCATCTTCAT+CGG | 0.561997 | 1.1:-59680611 | None:intergenic |
| ACATGCCGTCATCGGTGTCG+TGG | 0.562228 | 1.1:+59680464 | MS.gene69779:CDS |
| CGTGAATCATATACAATGGT+AGG | 0.564534 | 1.1:-59681150 | None:intergenic |
| TCCAACAGAGCTTTCTGGTG+AGG | 0.565118 | 1.1:+59681248 | MS.gene69779:CDS |
| GCGAGAAATAATCTTAAGAA+GGG | 0.567421 | 1.1:+59680622 | MS.gene69779:CDS |
| TTTCTCGCATCTTCATCGGT+AGG | 0.570074 | 1.1:-59680607 | None:intergenic |
| ATGCACAAATTCTAATGGAA+AGG | 0.570132 | 1.1:+59679826 | MS.gene69779:CDS |
| TATACTGCGGGTAATGCAAA+GGG | 0.571900 | 1.1:+59680511 | MS.gene69779:CDS |
| CATGTAAAACCAGCATTAGG+AGG | 0.572269 | 1.1:+59680673 | MS.gene69779:CDS |
| AACATTGAGATGAACAAGAT+CGG | 0.572272 | 1.1:+59680769 | MS.gene69779:CDS |
| TGGTTGCCTAACCCTCCAAA+GGG | 0.582899 | 1.1:+59680079 | MS.gene69779:CDS |
| CTTCGCGTGAGCAACTTCAC+CGG | 0.582952 | 1.1:+59680823 | MS.gene69779:CDS |
| TGAGAAATACATGCCGTCAT+CGG | 0.585107 | 1.1:+59680456 | MS.gene69779:CDS |
| TCCAATGATCAGCCGTTGCG+AGG | 0.585934 | 1.1:+59679920 | MS.gene69779:CDS |
| GCCAACTGGTCCAAAGGAGA+AGG | 0.588714 | 1.1:+59681275 | MS.gene69779:CDS |
| GTGGCAGTAGTAACCAAGAC+AGG | 0.592567 | 1.1:-59679897 | None:intergenic |
| AAGGTTGTGTATTCCAAACC+TGG | 0.594362 | 1.1:-59680243 | None:intergenic |
| AATCCATCTGGAATCTCCAA+AGG | 0.594832 | 1.1:-59679872 | None:intergenic |
| CTCATATATTGCAACCAACA+TGG | 0.598495 | 1.1:-59681117 | None:intergenic |
| AAGAGCCAAGGATTCTGACT+CGG | 0.598761 | 1.1:-59679993 | None:intergenic |
| CCTCTTCCACAATGGCCACA+AGG | 0.602749 | 1.1:+59679237 | MS.gene69779:CDS |
| GGCACAAATTTACCTGGTGG+AGG | 0.603301 | 1.1:+59680553 | MS.gene69779:CDS |
| GGTTGCAATATATGAGAGAG+TGG | 0.604682 | 1.1:+59681124 | MS.gene69779:CDS |
| CATTGAGCATTACGGGCCAA+CGG | 0.604760 | 1.1:+59680417 | MS.gene69779:CDS |
| CTAGCTAGAGGTGTATCTGT+CGG | 0.607900 | 1.1:+59680280 | MS.gene69779:CDS |
| GGTGGTAACTACTATGCCGA+CGG | 0.610312 | 1.1:-59680110 | None:intergenic |
| TATCACGGCACAAATTTACC+TGG | 0.610377 | 1.1:+59680547 | MS.gene69779:CDS |
| AAGGAGAAGGACAATTGGCT+AGG | 0.611868 | 1.1:+59681288 | MS.gene69779:CDS |
| TAGTTTATTCATCAAGACAT+GGG | 0.614112 | 1.1:+59680935 | MS.gene69779:CDS |
| CCAAAGGGTTATAAAGCCGT+CGG | 0.615266 | 1.1:+59680094 | MS.gene69779:CDS |
| GGAGGGGCCAACTGGTCCAA+AGG | 0.615580 | 1.1:+59681269 | MS.gene69779:CDS |
| CCTGGTGGAGGATATAATGA+TGG | 0.615594 | 1.1:+59680565 | MS.gene69779:CDS |
| TCAGGATGAAAATATACCGT+TGG | 0.617396 | 1.1:-59680433 | None:intergenic |
| CAAGTTTGGATGATCCCTGA+AGG | 0.618933 | 1.1:-59680987 | None:intergenic |
| GGTAAAGCTATAGATTATCA+CGG | 0.619614 | 1.1:+59680532 | MS.gene69779:CDS |
| TTTCGGTTCATCTGGACTGG+TGG | 0.621856 | 1.1:-59680128 | None:intergenic |
| CCTTTACTGATATTGCAATG+TGG | 0.624376 | 1.1:+59680698 | MS.gene69779:CDS |
| CACGGCACAAATTTACCTGG+TGG | 0.625316 | 1.1:+59680550 | MS.gene69779:CDS |
| ATAATACCTTGTGGCCATTG+TGG | 0.625787 | 1.1:-59679243 | None:intergenic |
| CCATCATTATATCCTCCACC+AGG | 0.627153 | 1.1:-59680565 | None:intergenic |
| GTTGCAATATATGAGAGAGT+GGG | 0.627285 | 1.1:+59681125 | MS.gene69779:CDS |
| GGCCATTGTGGAAGAGGTGA+AGG | 0.627997 | 1.1:-59679231 | None:intergenic |
| GCTGCCGAGTATCTTGGTGA+TGG | 0.635810 | 1.1:+59681081 | MS.gene69779:CDS |
| GAAGGGAAACATAGAGAGTG+CGG | 0.636222 | 1.1:+59680639 | MS.gene69779:CDS |
| TGAAGGTAAGTCCCTGCATG+AGG | 0.636865 | 1.1:-59680970 | None:intergenic |
| ATAGTTTATTCATCAAGACA+TGG | 0.637290 | 1.1:+59680934 | MS.gene69779:CDS |
| ACAAGAACGTGTCCTCGCAA+CGG | 0.637737 | 1.1:-59679932 | None:intergenic |
| TCTGTCGGAACATTCTTCTG+TGG | 0.649136 | 1.1:+59680295 | MS.gene69779:CDS |
| AACAAGATCGGTGAACATGT+CGG | 0.653405 | 1.1:+59680781 | MS.gene69779:CDS |
| CACTTGTTCAGAATCAAAGT+AGG | 0.653816 | 1.1:-59680320 | None:intergenic |
| AGAACGTGAATCATATACAA+TGG | 0.654517 | 1.1:-59681154 | None:intergenic |
| GCTAGCATACCTCTATCGCA+AGG | 0.655324 | 1.1:-59680262 | None:intergenic |
| ATGCTAGCTATCCTCATGCA+GGG | 0.655682 | 1.1:+59680959 | MS.gene69779:CDS |
| CAGAGCTTTCTGGTGAGGAG+GGG | 0.657357 | 1.1:+59681253 | MS.gene69779:CDS |
| GCAACGGCTGATCATTGGAG+TGG | 0.664542 | 1.1:-59679916 | None:intergenic |
| GAGTCATTACAGAACCATGT+TGG | 0.666649 | 1.1:+59681103 | MS.gene69779:CDS |
| TTGCAATATATGAGAGAGTG+GGG | 0.676061 | 1.1:+59681126 | MS.gene69779:CDS |
| GATAGAGGTATGCTAGCTAG+AGG | 0.685865 | 1.1:+59680268 | MS.gene69779:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAAAAAAATAATAGAAAA+AGG | - | chr1.1:59679280-59679299 | None:intergenic | 10.0% |
| !! | AGAAAAAAATAATAGAAAAA+GGG | - | chr1.1:59679279-59679298 | None:intergenic | 10.0% |
| !! | AAAAATAATAGAAAAAGGGA+AGG | - | chr1.1:59679275-59679294 | None:intergenic | 20.0% |
| !!! | AATACTATTTGATTTCGTTT+TGG | + | chr1.1:59679637-59679656 | MS.gene69779:intron | 20.0% |
| !!! | ATATTTGTGCTGTTTTTTAT+TGG | + | chr1.1:59679427-59679446 | MS.gene69779:intron | 20.0% |
| !!! | TGCTAAAAGTAATTTTATTC+TGG | + | chr1.1:59681032-59681051 | MS.gene69779:CDS | 20.0% |
| ! | ACAGAAAACCTAACAAATAT+TGG | - | chr1.1:59681207-59681226 | None:intergenic | 25.0% |
| ! | ATAGTTTATTCATCAAGACA+TGG | + | chr1.1:59680934-59680953 | MS.gene69779:CDS | 25.0% |
| ! | CACTTAATTACTCGTTAATA+TGG | + | chr1.1:59680023-59680042 | MS.gene69779:CDS | 25.0% |
| ! | CATATTAACGAGTAATTAAG+TGG | - | chr1.1:59680025-59680044 | None:intergenic | 25.0% |
| ! | CTGTTGGAAATAATTCAAAA+AGG | - | chr1.1:59681236-59681255 | None:intergenic | 25.0% |
| ! | TAAACAAGTTTGAGAAAGTT+TGG | + | chr1.1:59679801-59679820 | MS.gene69779:CDS | 25.0% |
| ! | TAGTTTATTCATCAAGACAT+GGG | + | chr1.1:59680935-59680954 | MS.gene69779:CDS | 25.0% |
| ! | TGTCTTGATGAATAAACTAT+TGG | - | chr1.1:59680934-59680953 | None:intergenic | 25.0% |
| !! | ATGATGAATGTGTTTACTTT+TGG | + | chr1.1:59680059-59680078 | MS.gene69779:CDS | 25.0% |
| !! | GGTATTACTGTGATTAATTT+TGG | + | chr1.1:59679448-59679467 | MS.gene69779:intron | 25.0% |
| !! | TTACTGTGTTCTTTCTATTT+TGG | + | chr1.1:59679363-59679382 | MS.gene69779:intron | 25.0% |
| !! | TTTCACATTTTATAGACCTT+TGG | + | chr1.1:59679856-59679875 | MS.gene69779:CDS | 25.0% |
| !!! | AATATTTGTTAGGTTTTCTG+TGG | + | chr1.1:59681206-59681225 | MS.gene69779:CDS | 25.0% |
| !!! | ATTCGATTTGGAGTTTATTA+AGG | + | chr1.1:59680900-59680919 | MS.gene69779:CDS | 25.0% |
| !!! | GTAGTATTTTTTGCAGATAT+TGG | + | chr1.1:59679476-59679495 | MS.gene69779:intron | 25.0% |
| !!! | TTTGAGTTGATGATTAAAAC+AGG | - | chr1.1:59679326-59679345 | None:intergenic | 25.0% |
| !!! | TTTGATTTCGTTTTGGTTAT+TGG | + | chr1.1:59679644-59679663 | MS.gene69779:intron | 25.0% |
| AACATTGAGATGAACAAGAT+CGG | + | chr1.1:59680769-59680788 | MS.gene69779:CDS | 30.0% | |
| ACATGCTTCCAATATTTGTT+AGG | + | chr1.1:59681196-59681215 | MS.gene69779:CDS | 30.0% | |
| AGAAAAATTCTTTCCAGGTT+TGG | + | chr1.1:59680230-59680249 | MS.gene69779:CDS | 30.0% | |
| AGAACGTGAATCATATACAA+TGG | - | chr1.1:59681157-59681176 | None:intergenic | 30.0% | |
| ATGCACAAATTCTAATGGAA+AGG | + | chr1.1:59679826-59679845 | MS.gene69779:CDS | 30.0% | |
| CTTTACTGATATTGCAATGT+GGG | + | chr1.1:59680699-59680718 | MS.gene69779:CDS | 30.0% | |
| GCGAGAAATAATCTTAAGAA+GGG | + | chr1.1:59680622-59680641 | MS.gene69779:CDS | 30.0% | |
| GGTAAAGCTATAGATTATCA+CGG | + | chr1.1:59680532-59680551 | MS.gene69779:CDS | 30.0% | |
| GTCAAAGAAAAATTCTTTCC+AGG | + | chr1.1:59680225-59680244 | MS.gene69779:CDS | 30.0% | |
| GTTCATCAATGACACTTTAA+GGG | - | chr1.1:59680752-59680771 | None:intergenic | 30.0% | |
| TGCGAGAAATAATCTTAAGA+AGG | + | chr1.1:59680621-59680640 | MS.gene69779:CDS | 30.0% | |
| TGTTCATCAATGACACTTTA+AGG | - | chr1.1:59680753-59680772 | None:intergenic | 30.0% | |
| ! | ATTATTTCTCGCATCTTCAT+CGG | - | chr1.1:59680614-59680633 | None:intergenic | 30.0% |
| !! | TGTAACTTGTATTTTCCCAA+GGG | - | chr1.1:59679777-59679796 | None:intergenic | 30.0% |
| !! | TTGTAACTTGTATTTTCCCA+AGG | - | chr1.1:59679778-59679797 | None:intergenic | 30.0% |
| CACTTGTTCAGAATCAAAGT+AGG | - | chr1.1:59680323-59680342 | None:intergenic | 35.0% | |
| CATCGAACTTCTTCAACTTT+CGG | - | chr1.1:59680148-59680167 | None:intergenic | 35.0% | |
| CCACATTGCAATATCAGTAA+AGG | - | chr1.1:59680701-59680720 | None:intergenic | 35.0% | |
| CCTTTACTGATATTGCAATG+TGG | + | chr1.1:59680698-59680717 | MS.gene69779:CDS | 35.0% | |
| CGTGAATCATATACAATGGT+AGG | - | chr1.1:59681153-59681172 | None:intergenic | 35.0% | |
| CTACTTTGATTCTGAACAAG+TGG | + | chr1.1:59680321-59680340 | MS.gene69779:CDS | 35.0% | |
| CTCACAAACTTCTGTTAGAT+CGG | - | chr1.1:59680179-59680198 | None:intergenic | 35.0% | |
| CTCATATATTGCAACCAACA+TGG | - | chr1.1:59681120-59681139 | None:intergenic | 35.0% | |
| GTTCATGTAAAACCAGCATT+AGG | + | chr1.1:59680670-59680689 | MS.gene69779:CDS | 35.0% | |
| GTTGCAATATATGAGAGAGT+GGG | + | chr1.1:59681125-59681144 | MS.gene69779:CDS | 35.0% | |
| TCAGGATGAAAATATACCGT+TGG | - | chr1.1:59680436-59680455 | None:intergenic | 35.0% | |
| TGGAGATGCACAAATTCTAA+TGG | + | chr1.1:59679821-59679840 | MS.gene69779:CDS | 35.0% | |
| TTACTCGTTAATATGGTGCA+TGG | + | chr1.1:59680030-59680049 | MS.gene69779:CDS | 35.0% | |
| TTATTTCCAACAGAGCTTTC+TGG | + | chr1.1:59681243-59681262 | MS.gene69779:CDS | 35.0% | |
| TTGCAATATATGAGAGAGTG+GGG | + | chr1.1:59681126-59681145 | MS.gene69779:CDS | 35.0% | |
| ! | ATGGGTTAATGCATTCGATT+TGG | + | chr1.1:59680888-59680907 | MS.gene69779:CDS | 35.0% |
| ! | TGGAGCAATTTTGTATACTG+CGG | + | chr1.1:59680498-59680517 | MS.gene69779:CDS | 35.0% |
| !! | AATTCTAATGGAAAGGCACT+AGG | + | chr1.1:59679833-59679852 | MS.gene69779:CDS | 35.0% |
| !! | AGGTTGATGATAATACCTTG+TGG | - | chr1.1:59679255-59679274 | None:intergenic | 35.0% |
| !! | GATATAATGATGGTGCGTTT+TGG | + | chr1.1:59680575-59680594 | MS.gene69779:CDS | 35.0% |
| AAAAACAGACCAAAGCTCTC+CGG | - | chr1.1:59680845-59680864 | None:intergenic | 40.0% | |
| AACAAGATCGGTGAACATGT+CGG | + | chr1.1:59680781-59680800 | MS.gene69779:CDS | 40.0% | |
| AAGAGGTGAAGGAAGAGAAA+AGG | - | chr1.1:59679223-59679242 | None:intergenic | 40.0% | |
| AAGGTTGTGTATTCCAAACC+TGG | - | chr1.1:59680246-59680265 | None:intergenic | 40.0% | |
| AATACACAACCTTGCGATAG+AGG | + | chr1.1:59680253-59680272 | MS.gene69779:CDS | 40.0% | |
| AGAGGTGAAGGAAGAGAAAA+GGG | - | chr1.1:59679222-59679241 | None:intergenic | 40.0% | |
| ATAATACCTTGTGGCCATTG+TGG | - | chr1.1:59679246-59679265 | None:intergenic | 40.0% | |
| ATGCTCTCATTGAGCATTAC+GGG | + | chr1.1:59680410-59680429 | MS.gene69779:CDS | 40.0% | |
| CATGCTCTCATTGAGCATTA+CGG | + | chr1.1:59680409-59680428 | MS.gene69779:CDS | 40.0% | |
| CATGTAAAACCAGCATTAGG+AGG | + | chr1.1:59680673-59680692 | MS.gene69779:CDS | 40.0% | |
| GAGTCATTACAGAACCATGT+TGG | + | chr1.1:59681103-59681122 | MS.gene69779:CDS | 40.0% | |
| GCATGAATCTGGTTGAGATT+CGG | - | chr1.1:59680394-59680413 | None:intergenic | 40.0% | |
| GGAACAATCAGCTTGAGATT+TGG | - | chr1.1:59679975-59679994 | None:intergenic | 40.0% | |
| GGATCAGAGTCAAAGAATTC+TGG | - | chr1.1:59679195-59679214 | None:intergenic | 40.0% | |
| GGATCATCCAAACTTGGAAT+AGG | + | chr1.1:59680994-59681013 | MS.gene69779:CDS | 40.0% | |
| GGTTGCAATATATGAGAGAG+TGG | + | chr1.1:59681124-59681143 | MS.gene69779:CDS | 40.0% | |
| TATACTGCGGGTAATGCAAA+GGG | + | chr1.1:59680511-59680530 | MS.gene69779:CDS | 40.0% | |
| TATCACGGCACAAATTTACC+TGG | + | chr1.1:59680547-59680566 | MS.gene69779:CDS | 40.0% | |
| TCTTCAACTTTCGGTTCATC+TGG | - | chr1.1:59680139-59680158 | None:intergenic | 40.0% | |
| TGAGAAATACATGCCGTCAT+CGG | + | chr1.1:59680456-59680475 | MS.gene69779:CDS | 40.0% | |
| ! | AATCCATCTGGAATCTCCAA+AGG | - | chr1.1:59679875-59679894 | None:intergenic | 40.0% |
| ! | AATGACACTTTAAGGGTTGC+AGG | - | chr1.1:59680745-59680764 | None:intergenic | 40.0% |
| ! | GGAGCAATTTTGTATACTGC+GGG | + | chr1.1:59680499-59680518 | MS.gene69779:CDS | 40.0% |
| ! | TTATAACCCTTTGGAGGGTT+AGG | - | chr1.1:59680088-59680107 | None:intergenic | 40.0% |
| !! | AAGTGGCTTTTTAAGAGCCA+AGG | - | chr1.1:59680008-59680027 | None:intergenic | 40.0% |
| !!! | GTGTCGTGGTTTTTCAAGAA+TGG | + | chr1.1:59680478-59680497 | MS.gene69779:CDS | 40.0% |
| !!! | GTTTTTTTCTCTGAGCACAG+TGG | + | chr1.1:59680859-59680878 | MS.gene69779:CDS | 40.0% |
| !!! | TGGGTTTTTTGCCCATTCAA+TGG | + | chr1.1:59680718-59680737 | MS.gene69779:CDS | 40.0% |
| AAAAACCACGACACCGATGA+CGG | - | chr1.1:59680472-59680491 | None:intergenic | 45.0% | |
| AACTTTCGGTTCATCTGGAC+TGG | - | chr1.1:59680134-59680153 | None:intergenic | 45.0% | |
| AAGAGCCAAGGATTCTGACT+CGG | - | chr1.1:59679996-59680015 | None:intergenic | 45.0% | |
| AAGGAGAAGGACAATTGGCT+AGG | + | chr1.1:59681288-59681307 | MS.gene69779:CDS | 45.0% | |
| AGCCAATTGTCCTTCTCCTT+TGG | - | chr1.1:59681288-59681307 | None:intergenic | 45.0% | |
| AGCTTGTGAGTGATCTACTC+AGG | + | chr1.1:59679725-59679744 | MS.gene69779:intron | 45.0% | |
| ATGCTAGCTATCCTCATGCA+GGG | + | chr1.1:59680959-59680978 | MS.gene69779:CDS | 45.0% | |
| ATTGTTGCTGCCGAGTATCT+TGG | + | chr1.1:59681075-59681094 | MS.gene69779:CDS | 45.0% | |
| CAAGTTTGGATGATCCCTGA+AGG | - | chr1.1:59680990-59681009 | None:intergenic | 45.0% | |
| CCAAAGGGTTATAAAGCCGT+CGG | + | chr1.1:59680094-59680113 | MS.gene69779:CDS | 45.0% | |
| CCAAGACAGGAAAATCCATC+TGG | - | chr1.1:59679887-59679906 | None:intergenic | 45.0% | |
| CCATCATTATATCCTCCACC+AGG | - | chr1.1:59680568-59680587 | None:intergenic | 45.0% | |
| CCTGGTGGAGGATATAATGA+TGG | + | chr1.1:59680565-59680584 | MS.gene69779:CDS | 45.0% | |
| CTTCAGGGATCATCCAAACT+TGG | + | chr1.1:59680988-59681007 | MS.gene69779:CDS | 45.0% | |
| GAAGGAAGAGAAAAGGGAAG+TGG | - | chr1.1:59679216-59679235 | None:intergenic | 45.0% | |
| GAAGGGAAACATAGAGAGTG+CGG | + | chr1.1:59680639-59680658 | MS.gene69779:CDS | 45.0% | |
| GACGGCATGTATTTCTCATC+AGG | - | chr1.1:59680454-59680473 | None:intergenic | 45.0% | |
| GACTCCATCACCAAGATACT+CGG | - | chr1.1:59681088-59681107 | None:intergenic | 45.0% | |
| GCGAACTCCTATTCCAAGTT+TGG | - | chr1.1:59681004-59681023 | None:intergenic | 45.0% | |
| GTATACTGCGGGTAATGCAA+AGG | + | chr1.1:59680510-59680529 | MS.gene69779:CDS | 45.0% | |
| GTCCAAAGGAGAAGGACAAT+TGG | + | chr1.1:59681283-59681302 | MS.gene69779:CDS | 45.0% | |
| TCTGTCGGAACATTCTTCTG+TGG | + | chr1.1:59680295-59680314 | MS.gene69779:CDS | 45.0% | |
| TGAGCACAGTGGAGGTAAAT+GGG | + | chr1.1:59680870-59680889 | MS.gene69779:CDS | 45.0% | |
| TTCCTTCACCTCTTCCACAA+TGG | + | chr1.1:59679229-59679248 | MS.gene69779:CDS | 45.0% | |
| TTGTGAGTGATCTACTCAGG+TGG | + | chr1.1:59679728-59679747 | MS.gene69779:intron | 45.0% | |
| TTGTTCCGAGTCAGAATCCT+TGG | + | chr1.1:59679988-59680007 | MS.gene69779:CDS | 45.0% | |
| TTTCTCGCATCTTCATCGGT+AGG | - | chr1.1:59680610-59680629 | None:intergenic | 45.0% | |
| ! | ACGGCTTTATAACCCTTTGG+AGG | - | chr1.1:59680094-59680113 | None:intergenic | 45.0% |
| ! | AGACCTTTGGAGATTCCAGA+TGG | + | chr1.1:59679869-59679888 | MS.gene69779:CDS | 45.0% |
| ! | CGGCTTTATAACCCTTTGGA+GGG | - | chr1.1:59680093-59680112 | None:intergenic | 45.0% |
| ! | CTAGCTAGAGGTGTATCTGT+CGG | + | chr1.1:59680280-59680299 | MS.gene69779:CDS | 45.0% |
| ! | GATAGAGGTATGCTAGCTAG+AGG | + | chr1.1:59680268-59680287 | MS.gene69779:CDS | 45.0% |
| ! | GCTCAATGAGAGCATGAATC+TGG | - | chr1.1:59680405-59680424 | None:intergenic | 45.0% |
| ! | TTTTTCTCTGAGCACAGTGG+AGG | + | chr1.1:59680862-59680881 | MS.gene69779:CDS | 45.0% |
| !! | CCAGATGGATTTTCCTGTCT+TGG | + | chr1.1:59679884-59679903 | MS.gene69779:CDS | 45.0% |
| ACAAGAACGTGTCCTCGCAA+CGG | - | chr1.1:59679935-59679954 | None:intergenic | 50.0% | |
| AGGGTTGCAGGTCCATTGAA+TGG | - | chr1.1:59680733-59680752 | None:intergenic | 50.0% | |
| CACGGCACAAATTTACCTGG+TGG | + | chr1.1:59680550-59680569 | MS.gene69779:CDS | 50.0% | |
| CATGCAGGGACTTACCTTCA+GGG | + | chr1.1:59680973-59680992 | MS.gene69779:CDS | 50.0% | |
| CATGCTAGCTATCCTCATGC+AGG | + | chr1.1:59680958-59680977 | MS.gene69779:CDS | 50.0% | |
| CATTGAGCATTACGGGCCAA+CGG | + | chr1.1:59680417-59680436 | MS.gene69779:CDS | 50.0% | |
| CCCAAGGGATATTCTTCCAC+CGG | - | chr1.1:59679762-59679781 | None:intergenic | 50.0% | |
| CCGGTGGAAGAATATCCCTT+GGG | + | chr1.1:59679759-59679778 | MS.gene69779:CDS | 50.0% | |
| CGGTGAACATGTCGGTGATT+GGG | + | chr1.1:59680789-59680808 | MS.gene69779:CDS | 50.0% | |
| CTGAGCACAGTGGAGGTAAA+TGG | + | chr1.1:59680869-59680888 | MS.gene69779:CDS | 50.0% | |
| GCTAGCATACCTCTATCGCA+AGG | - | chr1.1:59680265-59680284 | None:intergenic | 50.0% | |
| GGCACAAATTTACCTGGTGG+AGG | + | chr1.1:59680553-59680572 | MS.gene69779:CDS | 50.0% | |
| GGGTTGCAGGTCCATTGAAT+GGG | - | chr1.1:59680732-59680751 | None:intergenic | 50.0% | |
| GGTGGTAACTACTATGCCGA+CGG | - | chr1.1:59680113-59680132 | None:intergenic | 50.0% | |
| GTAAAGGCTCCTCCTAATGC+TGG | - | chr1.1:59680685-59680704 | None:intergenic | 50.0% | |
| GTGGCAGTAGTAACCAAGAC+AGG | - | chr1.1:59679900-59679919 | None:intergenic | 50.0% | |
| TCATGCAGGGACTTACCTTC+AGG | + | chr1.1:59680972-59680991 | MS.gene69779:CDS | 50.0% | |
| TCCTCACCAGAAAGCTCTGT+TGG | - | chr1.1:59681252-59681271 | None:intergenic | 50.0% | |
| TCCTTCTCCTTTGGACCAGT+TGG | - | chr1.1:59681279-59681298 | None:intergenic | 50.0% | |
| TCGGTGAACATGTCGGTGAT+TGG | + | chr1.1:59680788-59680807 | MS.gene69779:CDS | 50.0% | |
| TGAAGGTAAGTCCCTGCATG+AGG | - | chr1.1:59680973-59680992 | None:intergenic | 50.0% | |
| TGAGTGATCTACTCAGGTGG+TGG | + | chr1.1:59679731-59679750 | MS.gene69779:intron | 50.0% | |
| TGGTTGCCTAACCCTCCAAA+GGG | + | chr1.1:59680079-59680098 | MS.gene69779:CDS | 50.0% | |
| TTGGTTGCCTAACCCTCCAA+AGG | + | chr1.1:59680078-59680097 | MS.gene69779:CDS | 50.0% | |
| ! | AACAGAGCTTTCTGGTGAGG+AGG | + | chr1.1:59681251-59681270 | MS.gene69779:CDS | 50.0% |
| ! | ACAGAGCTTTCTGGTGAGGA+GGG | + | chr1.1:59681252-59681271 | MS.gene69779:CDS | 50.0% |
| ! | CCGACGGCTTTATAACCCTT+TGG | - | chr1.1:59680097-59680116 | None:intergenic | 50.0% |
| ! | TCCAACAGAGCTTTCTGGTG+AGG | + | chr1.1:59681248-59681267 | MS.gene69779:CDS | 50.0% |
| ! | TTTCGGTTCATCTGGACTGG+TGG | - | chr1.1:59680131-59680150 | None:intergenic | 50.0% |
| !! | TACTCAGGTGGTGGTTTTGC+CGG | + | chr1.1:59679740-59679759 | MS.gene69779:intron | 50.0% |
| AGGACACGTTCTTGTCGCTC+GGG | + | chr1.1:59679940-59679959 | MS.gene69779:CDS | 55.0% | |
| CCTCTTCCACAATGGCCACA+AGG | + | chr1.1:59679237-59679256 | MS.gene69779:CDS | 55.0% | |
| CCTTGTGGCCATTGTGGAAG+AGG | - | chr1.1:59679240-59679259 | None:intergenic | 55.0% | |
| CTTCGCGTGAGCAACTTCAC+CGG | + | chr1.1:59680823-59680842 | MS.gene69779:CDS | 55.0% | |
| GAGGACACGTTCTTGTCGCT+CGG | + | chr1.1:59679939-59679958 | MS.gene69779:CDS | 55.0% | |
| GCAACGGCTGATCATTGGAG+TGG | - | chr1.1:59679919-59679938 | None:intergenic | 55.0% | |
| GCAACTTCACCGGAGAGCTT+TGG | + | chr1.1:59680833-59680852 | MS.gene69779:CDS | 55.0% | |
| GCCAACTGGTCCAAAGGAGA+AGG | + | chr1.1:59681275-59681294 | MS.gene69779:CDS | 55.0% | |
| GCCGGTGGAAGAATATCCCT+TGG | + | chr1.1:59679758-59679777 | MS.gene69779:CDS | 55.0% | |
| GCTGCCGAGTATCTTGGTGA+TGG | + | chr1.1:59681081-59681100 | MS.gene69779:CDS | 55.0% | |
| GGCCATTGTGGAAGAGGTGA+AGG | - | chr1.1:59679234-59679253 | None:intergenic | 55.0% | |
| GGTGAAGTTGCTCACGCGAA+GGG | - | chr1.1:59680824-59680843 | None:intergenic | 55.0% | |
| TCCAATGATCAGCCGTTGCG+AGG | + | chr1.1:59679920-59679939 | MS.gene69779:CDS | 55.0% | |
| TCCTCGCAACGGCTGATCAT+TGG | - | chr1.1:59679924-59679943 | None:intergenic | 55.0% | |
| ! | CAGAGCTTTCTGGTGAGGAG+GGG | + | chr1.1:59681253-59681272 | MS.gene69779:CDS | 55.0% |
| CGGTGAAGTTGCTCACGCGA+AGG | - | chr1.1:59680825-59680844 | None:intergenic | 60.0% | |
| !! | ACATGCCGTCATCGGTGTCG+TGG | + | chr1.1:59680464-59680483 | MS.gene69779:CDS | 60.0% |
| !! | TCAGGTGGTGGTTTTGCCGG+TGG | + | chr1.1:59679743-59679762 | MS.gene69779:intron | 60.0% |
| GGAGGGGCCAACTGGTCCAA+AGG | + | chr1.1:59681269-59681288 | MS.gene69779:CDS | 65.0% | |
| TCTGGTGAGGAGGGGCCAAC+TGG | + | chr1.1:59681261-59681280 | MS.gene69779:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 59679188 | 59681326 | 59679188 | ID=MS.gene69779 |
| chr1.1 | mRNA | 59679188 | 59681326 | 59679188 | ID=MS.gene69779.t1;Parent=MS.gene69779 |
| chr1.1 | exon | 59679188 | 59679258 | 59679188 | ID=MS.gene69779.t1.exon1;Parent=MS.gene69779.t1 |
| chr1.1 | CDS | 59679188 | 59679258 | 59679188 | ID=cds.MS.gene69779.t1;Parent=MS.gene69779.t1 |
| chr1.1 | exon | 59679747 | 59681326 | 59679747 | ID=MS.gene69779.t1.exon2;Parent=MS.gene69779.t1 |
| chr1.1 | CDS | 59679747 | 59681326 | 59679747 | ID=cds.MS.gene69779.t1;Parent=MS.gene69779.t1 |
| Gene Sequence |
| Protein sequence |
