Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene70141.t1 | XP_003630420.1 | 81.2 | 544 | 59 | 6 | 1 | 542 | 1 | 503 | 2.50E-219 | 771.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene70141.t1 | Q9M0R2 | 66.2 | 340 | 110 | 1 | 203 | 537 | 324 | 663 | 2.4e-133 | 477.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene70141.t1 | G7LGG8 | 81.2 | 544 | 59 | 6 | 1 | 542 | 1 | 503 | 1.8e-219 | 771.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049660 | MS.gene70141 | 0.827432 | 1.57E-54 | -1.69E-46 |
MS.gene049989 | MS.gene70141 | 0.81274 | 3.64E-51 | -1.69E-46 |
MS.gene050338 | MS.gene70141 | 0.807645 | 4.57E-50 | -1.69E-46 |
MS.gene05054 | MS.gene70141 | 0.822438 | 2.37E-53 | -1.69E-46 |
MS.gene051423 | MS.gene70141 | 0.803541 | 3.32E-49 | -1.69E-46 |
MS.gene052367 | MS.gene70141 | 0.809279 | 2.05E-50 | -1.69E-46 |
MS.gene052383 | MS.gene70141 | 0.812843 | 3.46E-51 | -1.69E-46 |
MS.gene053348 | MS.gene70141 | 0.818201 | 2.22E-52 | -1.69E-46 |
MS.gene054551 | MS.gene70141 | 0.801493 | 8.77E-49 | -1.69E-46 |
MS.gene054614 | MS.gene70141 | 0.862124 | 6.33E-64 | -1.69E-46 |
MS.gene054999 | MS.gene70141 | 0.802029 | 6.81E-49 | -1.69E-46 |
MS.gene056041 | MS.gene70141 | 0.817631 | 2.98E-52 | -1.69E-46 |
MS.gene056704 | MS.gene70141 | 0.800404 | 1.46E-48 | -1.69E-46 |
MS.gene056870 | MS.gene70141 | 0.828408 | 9.14E-55 | -1.69E-46 |
MS.gene058382 | MS.gene70141 | 0.818609 | 1.79E-52 | -1.69E-46 |
MS.gene058386 | MS.gene70141 | 0.819483 | 1.13E-52 | -1.69E-46 |
MS.gene058827 | MS.gene70141 | 0.811909 | 5.53E-51 | -1.69E-46 |
MS.gene058828 | MS.gene70141 | 0.800452 | 1.43E-48 | -1.69E-46 |
MS.gene060473 | MS.gene70141 | 0.812909 | 3.34E-51 | -1.69E-46 |
MS.gene060565 | MS.gene70141 | 0.815157 | 1.07E-51 | -1.69E-46 |
MS.gene060825 | MS.gene70141 | 0.821895 | 3.17E-53 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene70141.t1 | MTR_8g095360 | 82.967 | 546 | 46 | 9 | 1 | 542 | 1 | 503 | 0.0 | 882 |
MS.gene70141.t1 | MTR_3g097350 | 65.035 | 572 | 151 | 13 | 9 | 542 | 13 | 573 | 0.0 | 657 |
MS.gene70141.t1 | MTR_4g033435 | 68.992 | 387 | 111 | 5 | 156 | 536 | 207 | 590 | 0.0 | 554 |
MS.gene70141.t1 | MTR_2g031610 | 53.333 | 345 | 153 | 4 | 203 | 540 | 124 | 467 | 3.83e-130 | 388 |
MS.gene70141.t1 | MTR_4g033435 | 69.231 | 260 | 73 | 4 | 156 | 411 | 207 | 463 | 2.52e-123 | 370 |
MS.gene70141.t1 | MTR_4g013300 | 52.367 | 338 | 150 | 7 | 200 | 530 | 104 | 437 | 1.64e-117 | 355 |
MS.gene70141.t1 | MTR_7g070480 | 51.205 | 332 | 152 | 7 | 205 | 530 | 84 | 411 | 1.23e-113 | 344 |
MS.gene70141.t1 | MTR_1g069915 | 43.909 | 353 | 184 | 6 | 197 | 540 | 120 | 467 | 1.86e-99 | 309 |
MS.gene70141.t1 | MTR_3g098530 | 30.516 | 213 | 132 | 6 | 215 | 425 | 64 | 262 | 7.20e-19 | 87.0 |
MS.gene70141.t1 | MTR_3g117100 | 29.437 | 231 | 138 | 7 | 220 | 435 | 110 | 330 | 3.57e-16 | 82.0 |
MS.gene70141.t1 | MTR_8g096170 | 29.954 | 217 | 128 | 7 | 215 | 425 | 47 | 245 | 4.06e-16 | 79.0 |
MS.gene70141.t1 | MTR_4g070810 | 27.982 | 218 | 138 | 6 | 220 | 425 | 107 | 317 | 1.87e-15 | 79.7 |
MS.gene70141.t1 | MTR_8g096180 | 29.493 | 217 | 129 | 7 | 215 | 425 | 44 | 242 | 2.16e-15 | 76.6 |
MS.gene70141.t1 | MTR_1g022480 | 28.899 | 218 | 136 | 7 | 220 | 425 | 112 | 322 | 4.20e-15 | 78.6 |
MS.gene70141.t1 | MTR_1g022480 | 28.899 | 218 | 136 | 7 | 220 | 425 | 112 | 322 | 4.26e-15 | 78.6 |
MS.gene70141.t1 | MTR_1g022480 | 28.899 | 218 | 136 | 7 | 220 | 425 | 112 | 322 | 6.16e-15 | 78.2 |
MS.gene70141.t1 | MTR_4g070790 | 27.064 | 218 | 140 | 6 | 220 | 425 | 84 | 294 | 1.50e-14 | 75.9 |
MS.gene70141.t1 | MTR_5g021050 | 25.974 | 231 | 146 | 7 | 220 | 435 | 76 | 296 | 1.52e-14 | 76.6 |
MS.gene70141.t1 | MTR_5g021050 | 25.974 | 231 | 146 | 7 | 220 | 435 | 76 | 296 | 1.54e-14 | 76.6 |
MS.gene70141.t1 | MTR_4g070720 | 26.754 | 228 | 148 | 6 | 220 | 435 | 96 | 316 | 1.37e-13 | 73.9 |
MS.gene70141.t1 | MTR_1g022480 | 28.372 | 215 | 135 | 7 | 223 | 425 | 31 | 238 | 1.61e-13 | 73.6 |
MS.gene70141.t1 | MTR_3g117090 | 26.316 | 228 | 149 | 6 | 220 | 435 | 97 | 317 | 4.33e-13 | 72.0 |
MS.gene70141.t1 | MTR_3g117090 | 26.316 | 228 | 149 | 6 | 220 | 435 | 97 | 317 | 5.21e-13 | 72.0 |
MS.gene70141.t1 | MTR_8g096180 | 28.000 | 225 | 132 | 7 | 215 | 425 | 44 | 252 | 6.34e-13 | 69.3 |
MS.gene70141.t1 | MTR_7g056587 | 27.650 | 217 | 138 | 7 | 221 | 425 | 101 | 310 | 7.26e-13 | 71.6 |
MS.gene70141.t1 | MTR_7g056587 | 27.650 | 217 | 138 | 7 | 221 | 425 | 123 | 332 | 9.06e-13 | 71.2 |
MS.gene70141.t1 | MTR_7g056587 | 27.650 | 217 | 138 | 7 | 221 | 425 | 109 | 318 | 9.88e-13 | 71.2 |
MS.gene70141.t1 | MTR_7g056587 | 27.650 | 217 | 138 | 7 | 221 | 425 | 109 | 318 | 1.04e-12 | 71.2 |
MS.gene70141.t1 | MTR_8g076880 | 28.139 | 231 | 141 | 7 | 220 | 435 | 79 | 299 | 1.67e-12 | 70.5 |
MS.gene70141.t1 | MTR_3g112150 | 28.507 | 221 | 133 | 8 | 220 | 425 | 93 | 303 | 9.61e-12 | 67.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene70141.t1 | AT4G09160 | 66.568 | 338 | 108 | 1 | 205 | 537 | 326 | 663 | 3.84e-172 | 502 |
MS.gene70141.t1 | AT4G09160 | 66.568 | 338 | 108 | 1 | 205 | 537 | 301 | 638 | 4.41e-172 | 501 |
MS.gene70141.t1 | AT4G09160 | 66.568 | 338 | 108 | 1 | 205 | 537 | 301 | 638 | 5.67e-172 | 501 |
MS.gene70141.t1 | AT1G72160 | 66.082 | 342 | 111 | 1 | 201 | 537 | 147 | 488 | 1.43e-168 | 487 |
MS.gene70141.t1 | AT1G22530 | 55.297 | 387 | 155 | 5 | 154 | 538 | 279 | 649 | 1.57e-144 | 431 |
MS.gene70141.t1 | AT1G22530 | 55.297 | 387 | 155 | 5 | 154 | 538 | 313 | 683 | 1.70e-144 | 432 |
MS.gene70141.t1 | AT1G72150 | 48.262 | 489 | 209 | 9 | 85 | 537 | 93 | 573 | 1.38e-141 | 421 |
MS.gene70141.t1 | AT1G30690 | 48.986 | 345 | 163 | 7 | 203 | 541 | 202 | 539 | 3.29e-117 | 357 |
MS.gene70141.t1 | AT1G30690 | 48.986 | 345 | 163 | 7 | 203 | 541 | 202 | 539 | 3.29e-117 | 357 |
MS.gene70141.t1 | AT3G51670 | 47.872 | 376 | 185 | 8 | 171 | 539 | 34 | 405 | 7.43e-114 | 344 |
MS.gene70141.t1 | AT1G01630 | 30.435 | 253 | 150 | 9 | 185 | 425 | 7 | 245 | 1.75e-18 | 85.9 |
MS.gene70141.t1 | AT4G39180 | 29.817 | 218 | 134 | 6 | 220 | 425 | 96 | 306 | 1.57e-17 | 86.3 |
MS.gene70141.t1 | AT4G39180 | 29.817 | 218 | 134 | 6 | 220 | 425 | 96 | 306 | 1.68e-17 | 86.3 |
MS.gene70141.t1 | AT4G39180 | 29.817 | 218 | 134 | 6 | 220 | 425 | 96 | 306 | 1.68e-17 | 86.3 |
MS.gene70141.t1 | AT2G21540 | 28.440 | 218 | 137 | 6 | 220 | 425 | 95 | 305 | 3.06e-16 | 82.0 |
MS.gene70141.t1 | AT2G21540 | 28.440 | 218 | 137 | 6 | 220 | 425 | 95 | 305 | 3.06e-16 | 82.0 |
MS.gene70141.t1 | AT2G21540 | 28.440 | 218 | 137 | 6 | 220 | 425 | 95 | 305 | 3.16e-16 | 82.0 |
MS.gene70141.t1 | AT2G21540 | 28.440 | 218 | 137 | 6 | 220 | 425 | 95 | 305 | 3.16e-16 | 82.0 |
MS.gene70141.t1 | AT2G21540 | 28.440 | 218 | 137 | 6 | 220 | 425 | 95 | 305 | 3.16e-16 | 82.0 |
MS.gene70141.t1 | AT2G21540 | 28.440 | 218 | 137 | 6 | 220 | 425 | 95 | 305 | 3.16e-16 | 82.0 |
MS.gene70141.t1 | AT4G34580 | 28.054 | 221 | 134 | 7 | 220 | 425 | 88 | 298 | 2.08e-15 | 79.7 |
MS.gene70141.t1 | AT4G34580 | 28.054 | 221 | 134 | 7 | 220 | 425 | 88 | 298 | 2.08e-15 | 79.7 |
MS.gene70141.t1 | AT3G24840 | 28.634 | 227 | 143 | 7 | 221 | 435 | 104 | 323 | 4.62e-15 | 78.6 |
MS.gene70141.t1 | AT3G24840 | 28.634 | 227 | 143 | 7 | 221 | 435 | 104 | 323 | 4.62e-15 | 78.6 |
MS.gene70141.t1 | AT3G24840 | 28.634 | 227 | 143 | 7 | 221 | 435 | 104 | 323 | 4.62e-15 | 78.6 |
MS.gene70141.t1 | AT3G24840 | 28.634 | 227 | 143 | 7 | 221 | 435 | 104 | 323 | 4.62e-15 | 78.6 |
MS.gene70141.t1 | AT3G24840 | 28.634 | 227 | 143 | 7 | 221 | 435 | 104 | 323 | 4.75e-15 | 78.6 |
MS.gene70141.t1 | AT3G24840 | 28.634 | 227 | 143 | 7 | 221 | 435 | 104 | 323 | 4.75e-15 | 78.6 |
MS.gene70141.t1 | AT3G24840 | 28.634 | 227 | 143 | 7 | 221 | 435 | 104 | 323 | 4.75e-15 | 78.6 |
MS.gene70141.t1 | AT1G19650 | 28.571 | 231 | 140 | 7 | 220 | 435 | 104 | 324 | 1.06e-14 | 77.4 |
MS.gene70141.t1 | AT2G16380 | 26.754 | 228 | 148 | 6 | 220 | 435 | 88 | 308 | 1.55e-14 | 76.6 |
MS.gene70141.t1 | AT2G16380 | 26.754 | 228 | 148 | 6 | 220 | 435 | 88 | 308 | 1.55e-14 | 76.6 |
MS.gene70141.t1 | AT1G19650 | 29.412 | 221 | 131 | 7 | 220 | 425 | 104 | 314 | 6.42e-14 | 74.3 |
MS.gene70141.t1 | AT1G19650 | 28.261 | 230 | 140 | 7 | 221 | 435 | 33 | 252 | 1.26e-13 | 73.9 |
MS.gene70141.t1 | AT4G39170 | 28.632 | 234 | 136 | 9 | 220 | 435 | 108 | 328 | 1.59e-13 | 73.9 |
MS.gene70141.t1 | AT4G39170 | 28.632 | 234 | 136 | 9 | 220 | 435 | 108 | 328 | 1.61e-13 | 73.6 |
MS.gene70141.t1 | AT2G21520 | 26.050 | 238 | 156 | 7 | 211 | 435 | 100 | 330 | 4.64e-13 | 72.4 |
MS.gene70141.t1 | AT2G21520 | 26.050 | 238 | 156 | 7 | 211 | 435 | 104 | 334 | 4.83e-13 | 72.4 |
MS.gene70141.t1 | AT2G21520 | 26.050 | 238 | 156 | 7 | 211 | 435 | 104 | 334 | 4.83e-13 | 72.4 |
MS.gene70141.t1 | AT1G22180 | 26.818 | 220 | 141 | 5 | 217 | 432 | 45 | 248 | 9.08e-13 | 69.7 |
MS.gene70141.t1 | AT1G22180 | 26.818 | 220 | 141 | 5 | 217 | 432 | 45 | 248 | 9.08e-13 | 69.7 |
MS.gene70141.t1 | AT4G08690 | 25.000 | 220 | 141 | 6 | 217 | 430 | 42 | 243 | 1.13e-11 | 66.2 |
MS.gene70141.t1 | AT4G08690 | 25.000 | 220 | 141 | 6 | 217 | 430 | 42 | 243 | 1.13e-11 | 66.2 |
MS.gene70141.t1 | AT4G08690 | 25.000 | 220 | 141 | 6 | 217 | 430 | 42 | 243 | 1.13e-11 | 66.2 |
MS.gene70141.t1 | AT1G75370 | 26.754 | 228 | 148 | 7 | 220 | 435 | 113 | 333 | 1.29e-11 | 67.8 |
MS.gene70141.t1 | AT1G75170 | 25.701 | 214 | 138 | 6 | 217 | 425 | 43 | 240 | 3.76e-11 | 64.7 |
MS.gene70141.t1 | AT1G75170 | 25.701 | 214 | 138 | 6 | 217 | 425 | 43 | 240 | 3.76e-11 | 64.7 |
MS.gene70141.t1 | AT1G75370 | 26.754 | 228 | 148 | 7 | 220 | 435 | 113 | 333 | 5.59e-11 | 65.9 |
Find 117 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGAACTGAATTCTCCATTTA+AGG | 0.132695 | 4.1:+7434926 | None:intergenic |
CCTGAGGAAGTATCCATTTA+TGG | 0.183327 | 4.1:-7435243 | MS.gene70141:CDS |
TCTTGGGAGGTGAGAGTAAT+AGG | 0.186017 | 4.1:-7433427 | MS.gene70141:CDS |
AGAGACAAAATTTCCTTAAA+TGG | 0.187206 | 4.1:-7434939 | MS.gene70141:CDS |
GCAACAGGTTCTTGCTTTGC+AGG | 0.224764 | 4.1:+7435297 | None:intergenic |
ATTCTCTGGAGAAAAGAATT+TGG | 0.227723 | 4.1:-7435117 | MS.gene70141:CDS |
ATTCTCCTGGACCTGGTAAA+TGG | 0.228568 | 4.1:-7434828 | MS.gene70141:CDS |
TTGAGTAAAGATGGTGAATT+TGG | 0.244972 | 4.1:-7434192 | MS.gene70141:CDS |
ACCTGTTTAGCCACAAATTC+GGG | 0.253270 | 4.1:+7434754 | None:intergenic |
ACAAGCCCTTCAATTGTTTC+AGG | 0.268118 | 4.1:-7434785 | MS.gene70141:CDS |
TTCTTCTTCGGTATTAGATT+TGG | 0.269327 | 4.1:+7435662 | None:intergenic |
AGTTCCTTGAGAAGAGTATT+AGG | 0.285523 | 4.1:-7434909 | MS.gene70141:CDS |
CCATTGACAACACAAGTTCT+AGG | 0.290988 | 4.1:-7433255 | MS.gene70141:CDS |
AAAAGCAAGTTTGTCTTTGC+TGG | 0.291845 | 4.1:-7434376 | MS.gene70141:CDS |
ATTTGGAATAGAGGAGTTAA+TGG | 0.294500 | 4.1:-7435100 | MS.gene70141:CDS |
AAGGAGTGGTATCCCATAAA+TGG | 0.296881 | 4.1:+7435230 | None:intergenic |
TGTTCATGTCAATGATCTTA+AGG | 0.301789 | 4.1:-7434851 | MS.gene70141:CDS |
ATCTTGTTGCTCTGACTCTA+AGG | 0.326417 | 4.1:+7435740 | None:intergenic |
TACCTGTTTAGCCACAAATT+CGG | 0.329481 | 4.1:+7434753 | None:intergenic |
AGCAAAGACAAACTTGCTTT+TGG | 0.331662 | 4.1:+7434378 | None:intergenic |
TGCAGAAATGTATACTATCT+TGG | 0.342464 | 4.1:-7433444 | MS.gene70141:intron |
TCAGTCAGAGAGTGAAGATT+TGG | 0.342948 | 4.1:+7433204 | None:intergenic |
CCCCGAATTTGTGGCTAAAC+AGG | 0.344867 | 4.1:-7434755 | MS.gene70141:intron |
CAACAACATGTGGTGTTGTT+TGG | 0.359368 | 4.1:+7435820 | None:intergenic |
GTTTCAACTTTCTCTGCAAC+AGG | 0.363178 | 4.1:+7435282 | None:intergenic |
GAGTTAATGGATGAGAAATT+AGG | 0.366666 | 4.1:-7435087 | MS.gene70141:CDS |
GAGTAATAGGGTGGGAAGTA+AGG | 0.385717 | 4.1:-7433414 | MS.gene70141:CDS |
TGAGAAATTAGGTGATGAAT+TGG | 0.386783 | 4.1:-7435076 | MS.gene70141:CDS |
AAACAATTGAAGGGCTTGTT+TGG | 0.391690 | 4.1:+7434789 | None:intergenic |
ACATGTGGTGTTGTTTGGTT+TGG | 0.400074 | 4.1:+7435825 | None:intergenic |
GTTTGGAATATCAGAAGGTT+TGG | 0.400595 | 4.1:+7435617 | None:intergenic |
TTTGTTGAAAGTTTCTTCTT+CGG | 0.404596 | 4.1:+7435650 | None:intergenic |
CTGAGGAAGTATCCATTTAT+GGG | 0.406828 | 4.1:-7435242 | MS.gene70141:CDS |
CTTGTGCAGGTTCTTCTGGT+GGG | 0.413583 | 4.1:+7435484 | None:intergenic |
AAAGGAAGAAGGAGATAAGA+AGG | 0.419922 | 4.1:-7435421 | MS.gene70141:CDS |
TTGGTTCTCTGGGTAAGAAA+AGG | 0.421719 | 4.1:+7434397 | None:intergenic |
CTCAATCCACCGTACTTCAC+AGG | 0.426324 | 4.1:+7434210 | None:intergenic |
GCAGAAATGTATACTATCTT+GGG | 0.426741 | 4.1:-7433443 | MS.gene70141:intron |
TGAGAAGAGTATTAGGAACT+TGG | 0.426783 | 4.1:-7434902 | MS.gene70141:CDS |
CGTCACTTCTTTCGTCTACA+AGG | 0.435281 | 4.1:+7435211 | None:intergenic |
CTATACTGTGATTGTCCAAA+AGG | 0.437811 | 4.1:-7433356 | MS.gene70141:CDS |
TTCTCCTGGACCTGGTAAAT+GGG | 0.441533 | 4.1:-7434827 | MS.gene70141:CDS |
CCTAGAACTTGTGTTGTCAA+TGG | 0.442818 | 4.1:+7433255 | None:intergenic |
CTGCTACTGAGATCACAATA+AGG | 0.444194 | 4.1:-7434158 | MS.gene70141:CDS |
GTATAGCTTCCTTCATTGCT+TGG | 0.448666 | 4.1:+7433373 | None:intergenic |
GAGAAAAGAATTTGGAATAG+AGG | 0.448687 | 4.1:-7435109 | MS.gene70141:CDS |
TTACATGCATGGATTTGATA+AGG | 0.449042 | 4.1:-7435043 | MS.gene70141:CDS |
AGGTGATGAATTGGAGAAAG+TGG | 0.450262 | 4.1:-7435067 | MS.gene70141:CDS |
CAAAAGGGTCTCAGTTGACT+TGG | 0.453511 | 4.1:+7434348 | None:intergenic |
TGGTTCTCTGGGTAAGAAAA+GGG | 0.464110 | 4.1:+7434398 | None:intergenic |
TACTTCACAGGGAGTTGCTC+TGG | 0.465408 | 4.1:+7434222 | None:intergenic |
TGATTAAGAACACGATTCTC+TGG | 0.467531 | 4.1:-7435131 | MS.gene70141:CDS |
GGACAATTACCCCGAATTTG+TGG | 0.468856 | 4.1:-7434764 | MS.gene70141:CDS |
CCTGTGTGTTATAACATATA+TGG | 0.470073 | 4.1:-7435012 | MS.gene70141:CDS |
TACGGTGGATTGAGTAAAGA+TGG | 0.480608 | 4.1:-7434201 | MS.gene70141:CDS |
GATACTTCCTCAGGTGGTAA+TGG | 0.483512 | 4.1:+7435252 | None:intergenic |
TCTTGTGCAGGTTCTTCTGG+TGG | 0.483607 | 4.1:+7435483 | None:intergenic |
AAAGACGAAGAAAAGGAAGA+AGG | 0.486264 | 4.1:-7435432 | MS.gene70141:CDS |
AAAGCAAGTTTGTCTTTGCT+GGG | 0.493026 | 4.1:-7434375 | MS.gene70141:CDS |
CAATGTGCCATGGTGGTACT+TGG | 0.493581 | 4.1:-7434440 | MS.gene70141:CDS |
TGGAATATCAGAAGGTTTGG+TGG | 0.495296 | 4.1:+7435620 | None:intergenic |
AATTGTCCTGAAACAATTGA+AGG | 0.495434 | 4.1:+7434779 | None:intergenic |
AACGAAGAAAGACGAAGAAA+AGG | 0.495758 | 4.1:-7435439 | MS.gene70141:CDS |
CCATAAATGGATACTTCCTC+AGG | 0.496479 | 4.1:+7435243 | None:intergenic |
TAAGAAGGAAGAGGAAGTGA+AGG | 0.497688 | 4.1:-7435406 | MS.gene70141:CDS |
AGTTCCCATTTACCAGGTCC+AGG | 0.502724 | 4.1:+7434823 | None:intergenic |
CTTGGGAGGTGAGAGTAATA+GGG | 0.506539 | 4.1:-7433426 | MS.gene70141:CDS |
TGCAGGTTCTTCTGGTGGGG+TGG | 0.508197 | 4.1:+7435488 | None:intergenic |
ATGAGTCTCAAGAGTGATGT+TGG | 0.508469 | 4.1:+7435689 | None:intergenic |
AGAAGGAGATAAGAAGGAAG+AGG | 0.510068 | 4.1:-7435415 | MS.gene70141:CDS |
GAGAAAGTGGTTTACATGCA+TGG | 0.510618 | 4.1:-7435054 | MS.gene70141:CDS |
GGTGGTACTTGGCAGTGAAT+AGG | 0.518645 | 4.1:-7434429 | MS.gene70141:CDS |
TGTCTAAGTTCCCATTTACC+AGG | 0.530869 | 4.1:+7434817 | None:intergenic |
GTATCTTCTGTGGAGGATGA+TGG | 0.535272 | 4.1:-7435375 | MS.gene70141:CDS |
TTGTGCAGGTTCTTCTGGTG+GGG | 0.538607 | 4.1:+7435485 | None:intergenic |
AATGATCTTAAGGATTCTCC+TGG | 0.539991 | 4.1:-7434841 | MS.gene70141:CDS |
GAATTTGTACCAAGCAATGA+AGG | 0.540167 | 4.1:-7433382 | MS.gene70141:CDS |
TGTAGAATTTCCTGTTACTG+AGG | 0.540830 | 4.1:-7434118 | MS.gene70141:intron |
CTTAAGGATTCTCCTGGACC+TGG | 0.542401 | 4.1:-7434835 | MS.gene70141:CDS |
ATGGTAAGAACAACTTTACC+AGG | 0.550180 | 4.1:+7433274 | None:intergenic |
TTGGTAGAGCAGAGAAGGCA+TGG | 0.554359 | 4.1:+7435538 | None:intergenic |
AGTTTCAAAATTAGTGAACC+TGG | 0.558010 | 4.1:-7433292 | MS.gene70141:CDS |
GAGCAACTCCCTGTGAAGTA+CGG | 0.569298 | 4.1:-7434219 | MS.gene70141:CDS |
TCATTGTTTGGAATATCAGA+AGG | 0.571936 | 4.1:+7435612 | None:intergenic |
AGGTGTTCATCAATGTGCCA+TGG | 0.572219 | 4.1:-7434450 | MS.gene70141:CDS |
GGGAGGTGAGAGTAATAGGG+TGG | 0.573952 | 4.1:-7433423 | MS.gene70141:CDS |
TGTCCAAAAGGCAAGAAAAG+TGG | 0.574530 | 4.1:-7433344 | MS.gene70141:CDS |
ATGCATGGATTTGATAAGGA+AGG | 0.579630 | 4.1:-7435039 | MS.gene70141:CDS |
GGAAAATGTAGTATCTTCTG+TGG | 0.580397 | 4.1:-7435385 | MS.gene70141:CDS |
TCTTGTTGCTCTGACTCTAA+GGG | 0.581269 | 4.1:+7435741 | None:intergenic |
AGTTCCTAATACTCTTCTCA+AGG | 0.586771 | 4.1:+7434905 | None:intergenic |
TTCATTGCCATTACCACCTG+AGG | 0.595484 | 4.1:-7435259 | MS.gene70141:CDS |
CTTCTTTCGTCTACAAGGAG+TGG | 0.596620 | 4.1:+7435216 | None:intergenic |
AACAACACCACATGTTGTTG+AGG | 0.598014 | 4.1:-7435817 | MS.gene70141:CDS |
ATAGGGTGGGAAGTAAGGTA+TGG | 0.600440 | 4.1:-7433409 | MS.gene70141:CDS |
ATTGTCCTGAAACAATTGAA+GGG | 0.601114 | 4.1:+7434780 | None:intergenic |
AGGGTCTCAGTTGACTTGGA+AGG | 0.603122 | 4.1:+7434352 | None:intergenic |
CCATATATGTTATAACACAC+AGG | 0.604070 | 4.1:+7435012 | None:intergenic |
TTGGTTTGGAGAGTCATCGT+GGG | 0.606315 | 4.1:+7435839 | None:intergenic |
GGAGGTGAGAGTAATAGGGT+GGG | 0.610127 | 4.1:-7433422 | MS.gene70141:CDS |
TATTGAAGAAAGCGTTGTTG+CGG | 0.623757 | 4.1:-7435334 | MS.gene70141:CDS |
TCAATCCACCGTACTTCACA+GGG | 0.625536 | 4.1:+7434211 | None:intergenic |
TTTGGTTTGGAGAGTCATCG+TGG | 0.627279 | 4.1:+7435838 | None:intergenic |
AAATGTAGTATCTTCTGTGG+AGG | 0.629752 | 4.1:-7435382 | MS.gene70141:CDS |
AGAACCTGCACAAGAAAACA+AGG | 0.630005 | 4.1:-7435475 | MS.gene70141:CDS |
TTCTTGCTTTGCAGGAACAG+AGG | 0.630059 | 4.1:+7435305 | None:intergenic |
TAAATGGATACTTCCTCAGG+TGG | 0.634257 | 4.1:+7435246 | None:intergenic |
GTGAAGATTTGGTCTTCAAG+CGG | 0.637718 | 4.1:+7433215 | None:intergenic |
GAAATGTATACTATCTTGGG+AGG | 0.647101 | 4.1:-7433440 | MS.gene70141:CDS |
ACAACTTCCTCAACAACATG+TGG | 0.651182 | 4.1:+7435810 | None:intergenic |
CATATATGTTATAACACACA+GGG | 0.656526 | 4.1:+7435013 | None:intergenic |
ATATGGTGAATTTCAGAACA+AGG | 0.659457 | 4.1:-7434995 | MS.gene70141:CDS |
CCTGTTTAGCCACAAATTCG+GGG | 0.660017 | 4.1:+7434755 | None:intergenic |
CAACTCCCTGTGAAGTACGG+TGG | 0.660112 | 4.1:-7434216 | MS.gene70141:CDS |
TTCACTGCCAAGTACCACCA+TGG | 0.690995 | 4.1:+7434433 | None:intergenic |
TGTTCATCAATGTGCCATGG+TGG | 0.709016 | 4.1:-7434447 | MS.gene70141:CDS |
CAATAGTGCATACACCACCA+TGG | 0.712017 | 4.1:+7434872 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTACATACAATTTTTTTATA+TGG | - | chr4.1:7434479-7434498 | MS.gene70141:intron | 10.0% |
!! | TTGATAAATTATATGTGTAA+TGG | - | chr4.1:7434518-7434537 | MS.gene70141:intron | 15.0% |
!!! | AGGTTTGATATTTTTTTATT+TGG | - | chr4.1:7435574-7435593 | MS.gene70141:CDS | 15.0% |
!!! | ATTGTGAATAATTTGATTTT+TGG | - | chr4.1:7434776-7434795 | MS.gene70141:CDS | 15.0% |
!!! | TGCAATTTTTTGAAATATTA+AGG | + | chr4.1:7434434-7434453 | None:intergenic | 15.0% |
!! | AAATATCAAACCTTATATCA+AGG | + | chr4.1:7435567-7435586 | None:intergenic | 20.0% |
!! | GGAATAGAATATAAAATCAA+AGG | + | chr4.1:7435054-7435073 | None:intergenic | 20.0% |
!! | TTGTCTTCTTATAACATTAT+TGG | - | chr4.1:7434323-7434342 | MS.gene70141:intron | 20.0% |
!!! | AATTTTTACAAGCATTAAAG+TGG | + | chr4.1:7435214-7435233 | None:intergenic | 20.0% |
!!! | ACTTGTTTTTCTTGTTTTAT+TGG | + | chr4.1:7433531-7433550 | None:intergenic | 20.0% |
!!! | TAACACTTTCTGTTTTTTTT+AGG | - | chr4.1:7434577-7434596 | MS.gene70141:intron | 20.0% |
!!! | TGATGTTTTGATTTCTTTAT+AGG | - | chr4.1:7435382-7435401 | MS.gene70141:CDS | 20.0% |
! | AATTCATTTGCCTTGATATA+AGG | - | chr4.1:7435554-7435573 | MS.gene70141:CDS | 25.0% |
! | AGAGACAAAATTTCCTTAAA+TGG | - | chr4.1:7434108-7434127 | MS.gene70141:intron | 25.0% |
! | ATCAAAACATCAACATCATT+AGG | + | chr4.1:7435374-7435393 | None:intergenic | 25.0% |
! | ATGTTAGAATTAGTTAGTGA+TGG | - | chr4.1:7435502-7435521 | MS.gene70141:CDS | 25.0% |
! | CATATATGTTATAACACACA+GGG | + | chr4.1:7434037-7434056 | None:intergenic | 25.0% |
! | GAGCATTCTACATATATAAA+GGG | - | chr4.1:7435310-7435329 | MS.gene70141:CDS | 25.0% |
! | TAGGATTAAGAATCTTTCAT+AGG | - | chr4.1:7434992-7435011 | MS.gene70141:CDS | 25.0% |
! | TCAGATAATATTGACAAAAG+AGG | + | chr4.1:7435021-7435040 | None:intergenic | 25.0% |
! | TTTGCTAAAAGAATATACGT+TGG | + | chr4.1:7434407-7434426 | None:intergenic | 25.0% |
! | TTTGTTGAAAGTTTCTTCTT+CGG | + | chr4.1:7433400-7433419 | None:intergenic | 25.0% |
!! | AGAGCATTCTACATATATAA+AGG | - | chr4.1:7435309-7435328 | MS.gene70141:CDS | 25.0% |
!! | TATATGTTTTCACCTCAAAA+GGG | + | chr4.1:7434717-7434736 | None:intergenic | 25.0% |
!! | TTATATGTTTTCACCTCAAA+AGG | + | chr4.1:7434718-7434737 | None:intergenic | 25.0% |
!! | TTTGAGGTGAAAACATATAA+GGG | - | chr4.1:7434718-7434737 | MS.gene70141:intron | 25.0% |
!!! | AGGGTTAAAAATTTGCTTTT+TGG | - | chr4.1:7434737-7434756 | MS.gene70141:intron | 25.0% |
!!! | TTTTGAGGTGAAAACATATA+AGG | - | chr4.1:7434717-7434736 | MS.gene70141:intron | 25.0% |
AAAACATCAACATCATTAGG+TGG | + | chr4.1:7435371-7435390 | None:intergenic | 30.0% | |
AATTGTCCTGAAACAATTGA+AGG | + | chr4.1:7434271-7434290 | None:intergenic | 30.0% | |
AGTTTCAAAATTAGTGAACC+TGG | - | chr4.1:7435755-7435774 | MS.gene70141:CDS | 30.0% | |
ATATGGTGAATTTCAGAACA+AGG | - | chr4.1:7434052-7434071 | MS.gene70141:intron | 30.0% | |
ATTGTCCTGAAACAATTGAA+GGG | + | chr4.1:7434270-7434289 | None:intergenic | 30.0% | |
CCATATATGTTATAACACAC+AGG | + | chr4.1:7434038-7434057 | None:intergenic | 30.0% | |
CCTGTGTGTTATAACATATA+TGG | - | chr4.1:7434035-7434054 | MS.gene70141:intron | 30.0% | |
GCAGAAATGTATACTATCTT+GGG | - | chr4.1:7435604-7435623 | MS.gene70141:CDS | 30.0% | |
TAATCCTATGTTGCATTCTT+TGG | + | chr4.1:7434980-7434999 | None:intergenic | 30.0% | |
TGAGAAATTAGGTGATGAAT+TGG | - | chr4.1:7433971-7433990 | MS.gene70141:intron | 30.0% | |
TGCAGAAATGTATACTATCT+TGG | - | chr4.1:7435603-7435622 | MS.gene70141:CDS | 30.0% | |
TGTTCATGTCAATGATCTTA+AGG | - | chr4.1:7434196-7434215 | MS.gene70141:CDS | 30.0% | |
TTACATGCATGGATTTGATA+AGG | - | chr4.1:7434004-7434023 | MS.gene70141:intron | 30.0% | |
TTCTTCTTCGGTATTAGATT+TGG | + | chr4.1:7433388-7433407 | None:intergenic | 30.0% | |
TTGAGTAAAGATGGTGAATT+TGG | - | chr4.1:7434855-7434874 | MS.gene70141:CDS | 30.0% | |
! | ATTCTCTGGAGAAAAGAATT+TGG | - | chr4.1:7433930-7433949 | MS.gene70141:intron | 30.0% |
! | ATTTGGAATAGAGGAGTTAA+TGG | - | chr4.1:7433947-7433966 | MS.gene70141:intron | 30.0% |
! | GAATGAGAATTTTAAGCTCT+TGG | + | chr4.1:7433473-7433492 | None:intergenic | 30.0% |
! | GAGAAAAGAATTTGGAATAG+AGG | - | chr4.1:7433938-7433957 | MS.gene70141:intron | 30.0% |
! | GAGTTAATGGATGAGAAATT+AGG | - | chr4.1:7433960-7433979 | MS.gene70141:intron | 30.0% |
! | TATACGTTGGTTATTCACAT+TGG | + | chr4.1:7434394-7434413 | None:intergenic | 30.0% |
! | TCATTGTTTGGAATATCAGA+AGG | + | chr4.1:7433438-7433457 | None:intergenic | 30.0% |
!! | CAAGAAAACTTTTTCTGATG+AGG | - | chr4.1:7434082-7434101 | MS.gene70141:intron | 30.0% |
!! | CTAACATTTTACACTAGTCT+AGG | + | chr4.1:7435489-7435508 | None:intergenic | 30.0% |
!!! | AAGAGATTTTAAGGTGAAAG+AGG | - | chr4.1:7433884-7433903 | MS.gene70141:intron | 30.0% |
!!! | AGTGACTTGTTTTCATTGTT+TGG | + | chr4.1:7433450-7433469 | None:intergenic | 30.0% |
AAAAGCAAGTTTGTCTTTGC+TGG | - | chr4.1:7434671-7434690 | MS.gene70141:intron | 35.0% | |
AAAGACGAAGAAAAGGAAGA+AGG | - | chr4.1:7433615-7433634 | MS.gene70141:intron | 35.0% | |
AAAGCAAGTTTGTCTTTGCT+GGG | - | chr4.1:7434672-7434691 | MS.gene70141:intron | 35.0% | |
AAAGGAAGAAGGAGATAAGA+AGG | - | chr4.1:7433626-7433645 | MS.gene70141:intron | 35.0% | |
AAATGTAGTATCTTCTGTGG+AGG | - | chr4.1:7433665-7433684 | MS.gene70141:intron | 35.0% | |
AACGAAGAAAGACGAAGAAA+AGG | - | chr4.1:7433608-7433627 | MS.gene70141:intron | 35.0% | |
AATGATCTTAAGGATTCTCC+TGG | - | chr4.1:7434206-7434225 | MS.gene70141:CDS | 35.0% | |
AGTTCCTAATACTCTTCTCA+AGG | + | chr4.1:7434145-7434164 | None:intergenic | 35.0% | |
ATGCATGGATTTGATAAGGA+AGG | - | chr4.1:7434008-7434027 | MS.gene70141:intron | 35.0% | |
ATGGTAAGAACAACTTTACC+AGG | + | chr4.1:7435776-7435795 | None:intergenic | 35.0% | |
CTATACTGTGATTGTCCAAA+AGG | - | chr4.1:7435691-7435710 | MS.gene70141:CDS | 35.0% | |
GAAATGTATACTATCTTGGG+AGG | - | chr4.1:7435607-7435626 | MS.gene70141:CDS | 35.0% | |
GAATTTGTACCAAGCAATGA+AGG | - | chr4.1:7435665-7435684 | MS.gene70141:CDS | 35.0% | |
GGAAAATGTAGTATCTTCTG+TGG | - | chr4.1:7433662-7433681 | MS.gene70141:intron | 35.0% | |
GGAACTGAATTCTCCATTTA+AGG | + | chr4.1:7434124-7434143 | None:intergenic | 35.0% | |
TACCTGTTTAGCCACAAATT+CGG | + | chr4.1:7434297-7434316 | None:intergenic | 35.0% | |
TGATTAAGAACACGATTCTC+TGG | - | chr4.1:7433916-7433935 | MS.gene70141:intron | 35.0% | |
TGTAGAATTTCCTGTTACTG+AGG | - | chr4.1:7434929-7434948 | MS.gene70141:CDS | 35.0% | |
TTCTATTCCACAAATTGTGC+AGG | - | chr4.1:7435065-7435084 | MS.gene70141:CDS | 35.0% | |
! | AAACAATTGAAGGGCTTGTT+TGG | + | chr4.1:7434261-7434280 | None:intergenic | 35.0% |
! | GTTTGGAATATCAGAAGGTT+TGG | + | chr4.1:7433433-7433452 | None:intergenic | 35.0% |
! | TCTACGTGCAAGAGATTTTA+AGG | - | chr4.1:7433875-7433894 | MS.gene70141:intron | 35.0% |
! | TTTTATTGGTAGAGCAGAGA+AGG | + | chr4.1:7433517-7433536 | None:intergenic | 35.0% |
! | TTTTCTTCTCAGGTTCATCA+GGG | + | chr4.1:7433338-7433357 | None:intergenic | 35.0% |
!! | AACTTGGATTTTAACCATGG+TGG | - | chr4.1:7434161-7434180 | MS.gene70141:CDS | 35.0% |
!! | AGCAAAGACAAACTTGCTTT+TGG | + | chr4.1:7434672-7434691 | None:intergenic | 35.0% |
!! | AGGAACTTGGATTTTAACCA+TGG | - | chr4.1:7434158-7434177 | MS.gene70141:CDS | 35.0% |
!! | AGTTCCTTGAGAAGAGTATT+AGG | - | chr4.1:7434138-7434157 | MS.gene70141:CDS | 35.0% |
!! | CTGAGGAAGTATCCATTTAT+GGG | - | chr4.1:7433805-7433824 | MS.gene70141:intron | 35.0% |
!! | TATTGAAGAAAGCGTTGTTG+CGG | - | chr4.1:7433713-7433732 | MS.gene70141:intron | 35.0% |
!! | TGAGAAGAGTATTAGGAACT+TGG | - | chr4.1:7434145-7434164 | MS.gene70141:CDS | 35.0% |
!!! | AAACTTGCTTTTGGTTCTCT+GGG | + | chr4.1:7434663-7434682 | None:intergenic | 35.0% |
!!! | TCTACAGTATGTTTTGATGC+TGG | + | chr4.1:7434915-7434934 | None:intergenic | 35.0% |
!!! | TTTTGTTAGCTTTGCAGTGT+TGG | - | chr4.1:7435180-7435199 | MS.gene70141:CDS | 35.0% |
AACAACACCACATGTTGTTG+AGG | - | chr4.1:7433230-7433249 | MS.gene70141:CDS | 40.0% | |
AAGGAGTGGTATCCCATAAA+TGG | + | chr4.1:7433820-7433839 | None:intergenic | 40.0% | |
ACAACTTCCTCAACAACATG+TGG | + | chr4.1:7433240-7433259 | None:intergenic | 40.0% | |
ACAAGCCCTTCAATTGTTTC+AGG | - | chr4.1:7434262-7434281 | MS.gene70141:intron | 40.0% | |
ACCTGTTTAGCCACAAATTC+GGG | + | chr4.1:7434296-7434315 | None:intergenic | 40.0% | |
AGAACCTGCACAAGAAAACA+AGG | - | chr4.1:7433572-7433591 | MS.gene70141:intron | 40.0% | |
AGAAGGAGATAAGAAGGAAG+AGG | - | chr4.1:7433632-7433651 | MS.gene70141:intron | 40.0% | |
AGGTGATGAATTGGAGAAAG+TGG | - | chr4.1:7433980-7433999 | MS.gene70141:intron | 40.0% | |
ATCTTGTTGCTCTGACTCTA+AGG | + | chr4.1:7433310-7433329 | None:intergenic | 40.0% | |
ATGAGTCTCAAGAGTGATGT+TGG | + | chr4.1:7433361-7433380 | None:intergenic | 40.0% | |
CATCAACATCATTAGGTGGT+TGG | + | chr4.1:7435367-7435386 | None:intergenic | 40.0% | |
CCATAAATGGATACTTCCTC+AGG | + | chr4.1:7433807-7433826 | None:intergenic | 40.0% | |
CCATTGACAACACAAGTTCT+AGG | - | chr4.1:7435792-7435811 | MS.gene70141:CDS | 40.0% | |
CCTAGAACTTGTGTTGTCAA+TGG | + | chr4.1:7435795-7435814 | None:intergenic | 40.0% | |
CTGCTACTGAGATCACAATA+AGG | - | chr4.1:7434889-7434908 | MS.gene70141:CDS | 40.0% | |
GAAAAACCAACCTCAGTAAC+AGG | + | chr4.1:7434942-7434961 | None:intergenic | 40.0% | |
GAATTTCCTGTTACTGAGGT+TGG | - | chr4.1:7434933-7434952 | MS.gene70141:CDS | 40.0% | |
GAGAAAGTGGTTTACATGCA+TGG | - | chr4.1:7433993-7434012 | MS.gene70141:intron | 40.0% | |
GCATCCAAAGAATGCAACAT+AGG | - | chr4.1:7434973-7434992 | MS.gene70141:CDS | 40.0% | |
GTATAGCTTCCTTCATTGCT+TGG | + | chr4.1:7435677-7435696 | None:intergenic | 40.0% | |
GTTTCAACTTTCTCTGCAAC+AGG | + | chr4.1:7433768-7433787 | None:intergenic | 40.0% | |
TAAATGGATACTTCCTCAGG+TGG | + | chr4.1:7433804-7433823 | None:intergenic | 40.0% | |
TAAGAAGGAAGAGGAAGTGA+AGG | - | chr4.1:7433641-7433660 | MS.gene70141:intron | 40.0% | |
TCAGTCAGAGAGTGAAGATT+TGG | + | chr4.1:7435846-7435865 | None:intergenic | 40.0% | |
TCTTGTTGCTCTGACTCTAA+GGG | + | chr4.1:7433309-7433328 | None:intergenic | 40.0% | |
TGGAATATCAGAAGGTTTGG+TGG | + | chr4.1:7433430-7433449 | None:intergenic | 40.0% | |
TGGTTCTCTGGGTAAGAAAA+GGG | + | chr4.1:7434652-7434671 | None:intergenic | 40.0% | |
TGTCCAAAAGGCAAGAAAAG+TGG | - | chr4.1:7435703-7435722 | MS.gene70141:CDS | 40.0% | |
TGTCTAAGTTCCCATTTACC+AGG | + | chr4.1:7434233-7434252 | None:intergenic | 40.0% | |
! | GTGAAGATTTGGTCTTCAAG+CGG | + | chr4.1:7435835-7435854 | None:intergenic | 40.0% |
! | GTTTTCTTCTCAGGTTCATC+AGG | + | chr4.1:7433339-7433358 | None:intergenic | 40.0% |
! | TTGGTTCTCTGGGTAAGAAA+AGG | + | chr4.1:7434653-7434672 | None:intergenic | 40.0% |
! | TTTTCTTGTGCAGGTTCTTC+TGG | + | chr4.1:7433570-7433589 | None:intergenic | 40.0% |
!! | ACATGTGGTGTTGTTTGGTT+TGG | + | chr4.1:7433225-7433244 | None:intergenic | 40.0% |
!! | CAACAACATGTGGTGTTGTT+TGG | + | chr4.1:7433230-7433249 | None:intergenic | 40.0% |
!! | CCTGAGGAAGTATCCATTTA+TGG | - | chr4.1:7433804-7433823 | MS.gene70141:intron | 40.0% |
!! | TACGGTGGATTGAGTAAAGA+TGG | - | chr4.1:7434846-7434865 | MS.gene70141:CDS | 40.0% |
!!! | AAGCCACTTTTCTTGCCTTT+TGG | + | chr4.1:7435709-7435728 | None:intergenic | 40.0% |
!!! | CAAACTTGCTTTTGGTTCTC+TGG | + | chr4.1:7434664-7434683 | None:intergenic | 40.0% |
!!! | CGTAGCTGTTTTTTCAGGTT+GGG | + | chr4.1:7433283-7433302 | None:intergenic | 40.0% |
!!! | GGAATCGTAGCTGTTTTTTC+AGG | + | chr4.1:7433288-7433307 | None:intergenic | 40.0% |
!!! | GTAGCTGTTTTTTCAGGTTG+GGG | + | chr4.1:7433282-7433301 | None:intergenic | 40.0% |
!!! | GTGATGTTGGTTTTCTTCTC+AGG | + | chr4.1:7433348-7433367 | None:intergenic | 40.0% |
!!! | TCGTAGCTGTTTTTTCAGGT+TGG | + | chr4.1:7433284-7433303 | None:intergenic | 40.0% |
AGGTGTTCATCAATGTGCCA+TGG | - | chr4.1:7434597-7434616 | MS.gene70141:intron | 45.0% | |
ATAGGGTGGGAAGTAAGGTA+TGG | - | chr4.1:7435638-7435657 | MS.gene70141:CDS | 45.0% | |
ATTCTCCTGGACCTGGTAAA+TGG | - | chr4.1:7434219-7434238 | MS.gene70141:CDS | 45.0% | |
CAAAAGGGTCTCAGTTGACT+TGG | + | chr4.1:7434702-7434721 | None:intergenic | 45.0% | |
CAATAGTGCATACACCACCA+TGG | + | chr4.1:7434178-7434197 | None:intergenic | 45.0% | |
CCTGTTTAGCCACAAATTCG+GGG | + | chr4.1:7434295-7434314 | None:intergenic | 45.0% | |
CGTCACTTCTTTCGTCTACA+AGG | + | chr4.1:7433839-7433858 | None:intergenic | 45.0% | |
CTTCAAGCCTGCACAATTTG+TGG | + | chr4.1:7435075-7435094 | None:intergenic | 45.0% | |
CTTCTTTCGTCTACAAGGAG+TGG | + | chr4.1:7433834-7433853 | None:intergenic | 45.0% | |
CTTGGGAGGTGAGAGTAATA+GGG | - | chr4.1:7435621-7435640 | MS.gene70141:CDS | 45.0% | |
GAGTAATAGGGTGGGAAGTA+AGG | - | chr4.1:7435633-7435652 | MS.gene70141:CDS | 45.0% | |
GATACTTCCTCAGGTGGTAA+TGG | + | chr4.1:7433798-7433817 | None:intergenic | 45.0% | |
GGACAATTACCCCGAATTTG+TGG | - | chr4.1:7434283-7434302 | MS.gene70141:intron | 45.0% | |
GTATCTTCTGTGGAGGATGA+TGG | - | chr4.1:7433672-7433691 | MS.gene70141:intron | 45.0% | |
TCAATCCACCGTACTTCACA+GGG | + | chr4.1:7434839-7434858 | None:intergenic | 45.0% | |
TCTTGGGAGGTGAGAGTAAT+AGG | - | chr4.1:7435620-7435639 | MS.gene70141:CDS | 45.0% | |
TGATGGAGCAAAAACTGTGG+AGG | - | chr4.1:7433689-7433708 | MS.gene70141:intron | 45.0% | |
TGTTCATCAATGTGCCATGG+TGG | - | chr4.1:7434600-7434619 | MS.gene70141:intron | 45.0% | |
TTCATTGCCATTACCACCTG+AGG | - | chr4.1:7433788-7433807 | MS.gene70141:intron | 45.0% | |
TTCTCCTGGACCTGGTAAAT+GGG | - | chr4.1:7434220-7434239 | MS.gene70141:CDS | 45.0% | |
TTCTTGCTTTGCAGGAACAG+AGG | + | chr4.1:7433745-7433764 | None:intergenic | 45.0% | |
! | AGTCAACTGAGACCCTTTTG+AGG | - | chr4.1:7434702-7434721 | MS.gene70141:intron | 45.0% |
!! | GGATGATGGAGCAAAAACTG+TGG | - | chr4.1:7433686-7433705 | MS.gene70141:intron | 45.0% |
!! | TTGGTTTGGAGAGTCATCGT+GGG | + | chr4.1:7433211-7433230 | None:intergenic | 45.0% |
!! | TTTGGTTTGGAGAGTCATCG+TGG | + | chr4.1:7433212-7433231 | None:intergenic | 45.0% |
!!! | TCGTCCTTGTTTTCTTGTGC+AGG | + | chr4.1:7433579-7433598 | None:intergenic | 45.0% |
AGTTCCCATTTACCAGGTCC+AGG | + | chr4.1:7434227-7434246 | None:intergenic | 50.0% | |
CAATGTGCCATGGTGGTACT+TGG | - | chr4.1:7434607-7434626 | MS.gene70141:intron | 50.0% | |
CCCCGAATTTGTGGCTAAAC+AGG | - | chr4.1:7434292-7434311 | MS.gene70141:intron | 50.0% | |
CTCAATCCACCGTACTTCAC+AGG | + | chr4.1:7434840-7434859 | None:intergenic | 50.0% | |
CTTAAGGATTCTCCTGGACC+TGG | - | chr4.1:7434212-7434231 | MS.gene70141:CDS | 50.0% | |
CTTGTGCAGGTTCTTCTGGT+GGG | + | chr4.1:7433566-7433585 | None:intergenic | 50.0% | |
GAGCAACTCCCTGTGAAGTA+CGG | - | chr4.1:7434828-7434847 | MS.gene70141:CDS | 50.0% | |
GCAACAGGTTCTTGCTTTGC+AGG | + | chr4.1:7433753-7433772 | None:intergenic | 50.0% | |
GGAGGTGAGAGTAATAGGGT+GGG | - | chr4.1:7435625-7435644 | MS.gene70141:CDS | 50.0% | |
GGTGGTACTTGGCAGTGAAT+AGG | - | chr4.1:7434618-7434637 | MS.gene70141:intron | 50.0% | |
TACTTCACAGGGAGTTGCTC+TGG | + | chr4.1:7434828-7434847 | None:intergenic | 50.0% | |
TCTTGTGCAGGTTCTTCTGG+TGG | + | chr4.1:7433567-7433586 | None:intergenic | 50.0% | |
TTCACTGCCAAGTACCACCA+TGG | + | chr4.1:7434617-7434636 | None:intergenic | 50.0% | |
TTGGTAGAGCAGAGAAGGCA+TGG | + | chr4.1:7433512-7433531 | None:intergenic | 50.0% | |
TTGTGCAGGTTCTTCTGGTG+GGG | + | chr4.1:7433565-7433584 | None:intergenic | 50.0% | |
! | AGCTTTGCAGTGTTGGACTG+TGG | - | chr4.1:7435187-7435206 | MS.gene70141:CDS | 50.0% |
!! | AGGGTCTCAGTTGACTTGGA+AGG | + | chr4.1:7434698-7434717 | None:intergenic | 50.0% |
CAACTCCCTGTGAAGTACGG+TGG | - | chr4.1:7434831-7434850 | MS.gene70141:CDS | 55.0% | |
GGGAGGTGAGAGTAATAGGG+TGG | - | chr4.1:7435624-7435643 | MS.gene70141:CDS | 55.0% | |
TGCAGGTTCTTCTGGTGGGG+TGG | + | chr4.1:7433562-7433581 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.1 | gene | 7433204 | 7435865 | 7433204 | ID=MS.gene70141 |
chr4.1 | mRNA | 7433204 | 7435865 | 7433204 | ID=MS.gene70141.t1;Parent=MS.gene70141 |
chr4.1 | exon | 7434756 | 7435865 | 7434756 | ID=MS.gene70141.t1.exon1;Parent=MS.gene70141.t1 |
chr4.1 | CDS | 7434756 | 7435865 | 7434756 | ID=cds.MS.gene70141.t1;Parent=MS.gene70141.t1 |
chr4.1 | exon | 7434346 | 7434470 | 7434346 | ID=MS.gene70141.t1.exon2;Parent=MS.gene70141.t1 |
chr4.1 | CDS | 7434346 | 7434470 | 7434346 | ID=cds.MS.gene70141.t1;Parent=MS.gene70141.t1 |
chr4.1 | exon | 7434119 | 7434254 | 7434119 | ID=MS.gene70141.t1.exon3;Parent=MS.gene70141.t1 |
chr4.1 | CDS | 7434119 | 7434254 | 7434119 | ID=cds.MS.gene70141.t1;Parent=MS.gene70141.t1 |
chr4.1 | exon | 7433204 | 7433461 | 7433204 | ID=MS.gene70141.t1.exon4;Parent=MS.gene70141.t1 |
chr4.1 | CDS | 7433204 | 7433461 | 7433204 | ID=cds.MS.gene70141.t1;Parent=MS.gene70141.t1 |
Gene Sequence |
Protein sequence |