Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70311.t1 | XP_003630114.1 | 99.4 | 342 | 2 | 0 | 1 | 342 | 1 | 342 | 1.00E-189 | 672.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70311.t1 | Q9C5J9 | 77.0 | 348 | 65 | 7 | 2 | 342 | 3 | 342 | 9.6e-141 | 501.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70311.t1 | G7LBB0 | 99.4 | 342 | 2 | 0 | 1 | 342 | 1 | 342 | 7.2e-190 | 672.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05029 | MS.gene70311 | 0.804414 | 2.19E-49 | -1.69E-46 |
| MS.gene050752 | MS.gene70311 | 0.818287 | 2.12E-52 | -1.69E-46 |
| MS.gene050955 | MS.gene70311 | 0.815053 | 1.13E-51 | -1.69E-46 |
| MS.gene051003 | MS.gene70311 | 0.826948 | 2.05E-54 | -1.69E-46 |
| MS.gene051234 | MS.gene70311 | 0.804704 | 1.90E-49 | -1.69E-46 |
| MS.gene054004 | MS.gene70311 | 0.816136 | 6.46E-52 | -1.69E-46 |
| MS.gene054005 | MS.gene70311 | 0.831171 | 1.94E-55 | -1.69E-46 |
| MS.gene054403 | MS.gene70311 | 0.820315 | 7.32E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene51627 | MS.gene70311 | PPI |
| MS.gene009458 | MS.gene70311 | PPI |
| MS.gene56256 | MS.gene70311 | PPI |
| MS.gene63514 | MS.gene70311 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70311.t1 | MTR_8g091980 | 99.415 | 342 | 2 | 0 | 1 | 342 | 1 | 342 | 0.0 | 694 |
| MS.gene70311.t1 | MTR_8g091980 | 99.281 | 278 | 2 | 0 | 1 | 278 | 1 | 278 | 0.0 | 566 |
| MS.gene70311.t1 | MTR_8g092020 | 23.786 | 206 | 131 | 5 | 22 | 227 | 13 | 192 | 1.43e-12 | 66.2 |
| MS.gene70311.t1 | MTR_7g103070 | 28.369 | 141 | 76 | 3 | 23 | 162 | 18 | 134 | 2.75e-12 | 65.9 |
| MS.gene70311.t1 | MTR_1g029450 | 30.675 | 163 | 83 | 6 | 23 | 183 | 19 | 153 | 5.01e-12 | 65.1 |
| MS.gene70311.t1 | MTR_8g006970 | 26.286 | 175 | 96 | 5 | 17 | 189 | 16 | 159 | 7.02e-12 | 64.7 |
| MS.gene70311.t1 | MTR_1g062760 | 29.078 | 141 | 74 | 4 | 23 | 162 | 16 | 131 | 9.52e-12 | 63.9 |
| MS.gene70311.t1 | MTR_8g093740 | 31.902 | 163 | 81 | 7 | 23 | 183 | 15 | 149 | 1.63e-11 | 63.2 |
| MS.gene70311.t1 | MTR_8g006970 | 25.749 | 167 | 93 | 4 | 23 | 189 | 10 | 145 | 1.98e-11 | 62.4 |
| MS.gene70311.t1 | MTR_7g081700 | 25.150 | 167 | 94 | 4 | 23 | 189 | 10 | 145 | 8.79e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70311.t1 | AT5G64813 | 77.011 | 348 | 65 | 7 | 2 | 342 | 3 | 342 | 0.0 | 513 |
| MS.gene70311.t1 | AT5G64813 | 77.011 | 348 | 65 | 7 | 2 | 342 | 3 | 342 | 0.0 | 513 |
| MS.gene70311.t1 | AT5G64813 | 77.011 | 348 | 65 | 7 | 2 | 342 | 3 | 342 | 0.0 | 513 |
| MS.gene70311.t1 | AT5G09910 | 70.349 | 344 | 86 | 5 | 2 | 342 | 3 | 333 | 3.87e-163 | 459 |
| MS.gene70311.t1 | AT5G09910 | 70.349 | 344 | 86 | 5 | 2 | 342 | 3 | 333 | 3.87e-163 | 459 |
| MS.gene70311.t1 | AT5G09910 | 65.698 | 344 | 85 | 6 | 2 | 342 | 3 | 316 | 3.15e-145 | 413 |
| MS.gene70311.t1 | AT5G09910 | 65.698 | 344 | 85 | 6 | 2 | 342 | 3 | 316 | 3.15e-145 | 413 |
| MS.gene70311.t1 | AT5G09910 | 65.698 | 344 | 85 | 6 | 2 | 342 | 3 | 316 | 3.15e-145 | 413 |
| MS.gene70311.t1 | AT1G43890 | 32.515 | 163 | 80 | 6 | 23 | 183 | 15 | 149 | 2.42e-13 | 68.6 |
| MS.gene70311.t1 | AT1G43890 | 32.515 | 163 | 80 | 6 | 23 | 183 | 15 | 149 | 2.42e-13 | 68.6 |
| MS.gene70311.t1 | AT1G43890 | 32.515 | 163 | 80 | 6 | 23 | 183 | 15 | 149 | 2.42e-13 | 68.6 |
| MS.gene70311.t1 | AT5G03530 | 29.605 | 152 | 78 | 5 | 23 | 173 | 15 | 138 | 3.62e-11 | 62.4 |
| MS.gene70311.t1 | AT5G03530 | 29.605 | 152 | 78 | 5 | 23 | 173 | 15 | 138 | 3.62e-11 | 62.4 |
Find 87 sgRNAs with CRISPR-Local
Find 286 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAGTTCACCTTATCGTTAA+AGG | 0.183622 | 4.1:+9426210 | MS.gene70311:CDS |
| CCTGTTCCATATATTGTTAT+TGG | 0.188210 | 4.1:+9426734 | MS.gene70311:CDS |
| CATTTCCAGCACACTACTTA+TGG | 0.225792 | 4.1:+9426366 | MS.gene70311:intron |
| TTGTTACCAATAACAATATA+TGG | 0.272612 | 4.1:-9426740 | None:intergenic |
| CACACTACTTATGGAAATTC+TGG | 0.286680 | 4.1:+9426375 | MS.gene70311:CDS |
| GGAACGTGAGAGGGAGAATA+AGG | 0.330995 | 4.1:+9424140 | MS.gene70311:CDS |
| GTTGAACTGTGGGATGTATC+AGG | 0.360390 | 4.1:+9426444 | MS.gene70311:CDS |
| CCTTTGGGATCTGGCGGCCC+TGG | 0.368152 | 4.1:+9426704 | MS.gene70311:CDS |
| TTGAGGCGCTTACTGCAATA+AGG | 0.372575 | 4.1:-9426904 | None:intergenic |
| GCAGCTGAGATTGCTGCAAC+TGG | 0.375965 | 4.1:+9426668 | MS.gene70311:CDS |
| TTCTCATTCTTGCAGGTGTT+GGG | 0.377533 | 4.1:+9426178 | MS.gene70311:intron |
| GAACCAGACAAAGAAAATCT+AGG | 0.383439 | 4.1:-9428961 | None:intergenic |
| ACGCCAATGGGTCGAGAAGC+AGG | 0.392805 | 4.1:+9426823 | MS.gene70311:CDS |
| GATGATCAGTCTTATAATAC+AGG | 0.395791 | 4.1:+9428741 | MS.gene70311:CDS |
| AGGGTTTGGAAACCATGTTC+TGG | 0.396334 | 4.1:+9424115 | None:intergenic |
| CTACTGTACAACCAATTGTC+TGG | 0.410194 | 4.1:-9426254 | None:intergenic |
| GCTCGTCCTTCCCAGACAAT+TGG | 0.412167 | 4.1:+9426243 | MS.gene70311:CDS |
| TAGCTTTCAGAGACCGAAAC+TGG | 0.435235 | 4.1:-9428931 | None:intergenic |
| CTCTCTCAGAATCACCTTTG+AGG | 0.453797 | 4.1:-9426413 | None:intergenic |
| CCAATAACAATATATGGAAC+AGG | 0.458650 | 4.1:-9426734 | None:intergenic |
| AAAAGAAGCAAGGTATGATA+AGG | 0.458953 | 4.1:+9428478 | MS.gene70311:CDS |
| ATTCGCTGAGAAGATCTTTG+AGG | 0.468161 | 4.1:-9428675 | None:intergenic |
| GTCTGGGAAGGACGAGCAAT+GGG | 0.472190 | 4.1:-9426237 | None:intergenic |
| AGCTGATATTGTTGCAAAAG+AGG | 0.478431 | 4.1:+9426763 | MS.gene70311:CDS |
| CTATCCTCAACAACCAGTTT+CGG | 0.481026 | 4.1:+9428918 | MS.gene70311:CDS |
| CGAAGACGAGTTTGCAGAAG+TGG | 0.483875 | 4.1:+9426645 | MS.gene70311:CDS |
| AGATTGCGTTGAGCCGGAAG+TGG | 0.491900 | 4.1:-9428877 | None:intergenic |
| GTGCTCGTTGTTGGTGACTC+AGG | 0.492664 | 4.1:+9424198 | MS.gene70311:CDS |
| CTCACGTTCCCTCCAGAACA+TGG | 0.493187 | 4.1:-9424127 | None:intergenic |
| GGAGTTAGATTGCGTTGAGC+CGG | 0.493866 | 4.1:-9428883 | None:intergenic |
| AACCCTGCTTCTCGACCCAT+TGG | 0.497798 | 4.1:-9426826 | None:intergenic |
| TTGTTGATGTTGCACGCCAA+TGG | 0.504775 | 4.1:+9426810 | MS.gene70311:CDS |
| CATAACGGTGGAGTGCTTTG+TGG | 0.506067 | 4.1:+9424165 | MS.gene70311:CDS |
| AGTCAGTGGAAGCTCCTCGC+TGG | 0.509155 | 4.1:-9426858 | None:intergenic |
| ATGAAATACCTGCACCTACA+TGG | 0.516650 | 4.1:+9428640 | MS.gene70311:CDS |
| TGGGAGAACCTTTAACGATA+AGG | 0.517212 | 4.1:-9426218 | None:intergenic |
| AACGATAAGGTGAACTAAAG+AGG | 0.519763 | 4.1:-9426205 | None:intergenic |
| TTGGGATCTGGCGGCCCTGG+TGG | 0.522309 | 4.1:+9426707 | MS.gene70311:CDS |
| TGTTGATGTTGCACGCCAAT+GGG | 0.527951 | 4.1:+9426811 | MS.gene70311:CDS |
| TGAGGATAGAGTGTGGGTGG+TGG | 0.530789 | 4.1:-9428904 | None:intergenic |
| GAGATTTCTTTGTTGAACTG+TGG | 0.535232 | 4.1:+9426433 | MS.gene70311:CDS |
| TGAGAAGATCTTTGAGGTGA+AGG | 0.537945 | 4.1:-9428669 | None:intergenic |
| AGATCTTTGAGGTGAAGGAA+TGG | 0.539829 | 4.1:-9428664 | None:intergenic |
| TACTGTACAACCAATTGTCT+GGG | 0.540418 | 4.1:-9426253 | None:intergenic |
| AGTGGAAGCTCCTCGCTGGA+TGG | 0.542183 | 4.1:-9426854 | None:intergenic |
| CAAGTCAGAGTGCTCGTTGT+TGG | 0.544697 | 4.1:+9424189 | MS.gene70311:CDS |
| AACCAGACAAAGAAAATCTA+GGG | 0.551575 | 4.1:-9428960 | None:intergenic |
| GGAAGCATGTTATACTTGTA+CGG | 0.551656 | 4.1:-9428853 | None:intergenic |
| AGATTTCTTTGTTGAACTGT+GGG | 0.551856 | 4.1:+9426434 | MS.gene70311:CDS |
| GGAATGGACCATGTAGGTGC+AGG | 0.556023 | 4.1:-9428648 | None:intergenic |
| CAGCTGAGATTGCTGCAACT+GGG | 0.556342 | 4.1:+9426669 | MS.gene70311:CDS |
| TGTCTGGGAAGGACGAGCAA+TGG | 0.556939 | 4.1:-9426238 | None:intergenic |
| TGTTGAGGATAGAGTGTGGG+TGG | 0.563767 | 4.1:-9428907 | None:intergenic |
| TCAGTGAATAAAAGAGAGAT+CGG | 0.566338 | 4.1:-9426488 | None:intergenic |
| GATTGCGTTGAGCCGGAAGT+GGG | 0.566553 | 4.1:-9428876 | None:intergenic |
| GCTGATATTGTTGCAAAAGA+GGG | 0.567194 | 4.1:+9426764 | MS.gene70311:CDS |
| GCAATAAGGCCTCCACCACC+AGG | 0.569478 | 4.1:-9426890 | None:intergenic |
| AGCTCTTCAAGTAGCCTCAA+AGG | 0.575296 | 4.1:+9426399 | MS.gene70311:CDS |
| CGCCAATGGGTCGAGAAGCA+GGG | 0.583957 | 4.1:+9426824 | MS.gene70311:CDS |
| GAGGGTGCGAGAGGAAGCAG+CGG | 0.585539 | 4.1:+9426782 | MS.gene70311:CDS |
| AGAAGCAAGGTATGATAAGG+AGG | 0.588578 | 4.1:+9428481 | MS.gene70311:CDS |
| TTGCGTTGAGCCGGAAGTGG+GGG | 0.590536 | 4.1:-9428874 | None:intergenic |
| TATGGAACAGGAAGACCACC+AGG | 0.593874 | 4.1:-9426722 | None:intergenic |
| TGTTCTGGAGGGAACGTGAG+AGG | 0.595631 | 4.1:+9424130 | MS.gene70311:CDS |
| GTTTGGAAACCATGTTCTGG+AGG | 0.608805 | 4.1:+9424118 | None:intergenic |
| CCAGGGCCGCCAGATCCCAA+AGG | 0.609580 | 4.1:-9426704 | None:intergenic |
| GTACAACCAATTGTCTGGGA+AGG | 0.616763 | 4.1:-9426249 | None:intergenic |
| CCAGGAAAACTCTCAGTCAG+TGG | 0.617823 | 4.1:-9426872 | None:intergenic |
| TGGTTGTACAGTAGATGTGA+AGG | 0.618127 | 4.1:+9426263 | MS.gene70311:CDS |
| GTTCTGGAGGGAACGTGAGA+GGG | 0.619113 | 4.1:+9424131 | MS.gene70311:CDS |
| TACAGGCAGCAAAAGAAGCA+AGG | 0.630672 | 4.1:+9428468 | MS.gene70311:intron |
| GAGACCGAAACTGGTTGTTG+AGG | 0.633597 | 4.1:-9428922 | None:intergenic |
| TTTGGAAACCATGTTCTGGA+GGG | 0.634282 | 4.1:+9424119 | None:intergenic |
| GGTTGTTGAGGATAGAGTGT+GGG | 0.640336 | 4.1:-9428910 | None:intergenic |
| AGGGAGAATAAGGAACATAA+CGG | 0.642381 | 4.1:+9424150 | MS.gene70311:CDS |
| GTTGCAAAAGAGGGTGCGAG+AGG | 0.651488 | 4.1:+9426773 | MS.gene70311:CDS |
| ATTGCGTTGAGCCGGAAGTG+GGG | 0.655325 | 4.1:-9428875 | None:intergenic |
| AGGGTGCGAGAGGAAGCAGC+GGG | 0.661507 | 4.1:+9426783 | MS.gene70311:CDS |
| TCAGCTCCTTTGGGATCTGG+CGG | 0.672711 | 4.1:+9426698 | MS.gene70311:CDS |
| ATGATCAGTCTTATAATACA+GGG | 0.679216 | 4.1:+9428742 | MS.gene70311:CDS |
| GAAGACGAGTTTGCAGAAGT+GGG | 0.680237 | 4.1:+9426646 | MS.gene70311:CDS |
| GAGAATAAGGAACATAACGG+TGG | 0.686740 | 4.1:+9424153 | MS.gene70311:CDS |
| TGGTTGTTGAGGATAGAGTG+TGG | 0.696987 | 4.1:-9428911 | None:intergenic |
| GGGTTTGCTTCCATCCAGCG+AGG | 0.699492 | 4.1:+9426844 | MS.gene70311:CDS |
| GGTGAAGGAATGGACCATGT+AGG | 0.709587 | 4.1:-9428654 | None:intergenic |
| TAGATGAAATATCTTCTCAG+CGG | 0.726315 | 4.1:+9428697 | MS.gene70311:CDS |
| ATGGAACAGGAAGACCACCA+GGG | 0.755247 | 4.1:-9426721 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATCTAAATAGAAAT+AGG | + | chr4.1:9427432-9427451 | MS.gene70311:intron | 10.0% |
| !! | GGTATTTATTATATAATTAA+TGG | - | chr4.1:9425743-9425762 | None:intergenic | 10.0% |
| !! | TAAATAAATAAATAAATACG+AGG | - | chr4.1:9428379-9428398 | None:intergenic | 10.0% |
| !!! | AATATTATTTGATTTTGAAT+TGG | + | chr4.1:9425236-9425255 | MS.gene70311:intron | 10.0% |
| !!! | AATTTATTTTCAAAATCAAA+AGG | + | chr4.1:9428087-9428106 | MS.gene70311:intron | 10.0% |
| !!! | ATAATATTAAATTTTATCAC+AGG | - | chr4.1:9425224-9425243 | None:intergenic | 10.0% |
| !!! | ATTTTTATAAATTAACTTTG+GGG | + | chr4.1:9425378-9425397 | MS.gene70311:intron | 10.0% |
| !!! | CTATTTTTATAAATTAACTT+TGG | + | chr4.1:9425376-9425395 | MS.gene70311:intron | 10.0% |
| !! | ATAAAATTCTATAGAGAATA+TGG | + | chr4.1:9427512-9427531 | MS.gene70311:intron | 15.0% |
| !! | ATATAATCCATTTATAAAGT+AGG | + | chr4.1:9425447-9425466 | MS.gene70311:intron | 15.0% |
| !!! | AGTAGTTTTAATTTTTTTGT+CGG | + | chr4.1:9428440-9428459 | MS.gene70311:intron | 15.0% |
| !!! | TAGAAGTTGATTTTTTTTAT+CGG | + | chr4.1:9428063-9428082 | MS.gene70311:intron | 15.0% |
| !!! | TCTAATCTAGTTTTTTTTAA+GGG | - | chr4.1:9428047-9428066 | None:intergenic | 15.0% |
| !!! | TTCTAATCTAGTTTTTTTTA+AGG | - | chr4.1:9428048-9428067 | None:intergenic | 15.0% |
| !!! | TTTTATAAAACTGAAACAAT+AGG | - | chr4.1:9426535-9426554 | None:intergenic | 15.0% |
| !! | AACTTAAGATGTTATACTAT+CGG | + | chr4.1:9428255-9428274 | MS.gene70311:intron | 20.0% |
| !! | ACTGTTATAATATTTGATTG+AGG | + | chr4.1:9424867-9424886 | MS.gene70311:intron | 20.0% |
| !! | AGCAAATTAAGAAATAGAAA+CGG | - | chr4.1:9425649-9425668 | None:intergenic | 20.0% |
| !! | ATCAAAATCTAATGTTACTA+GGG | + | chr4.1:9425407-9425426 | MS.gene70311:intron | 20.0% |
| !! | TAAAACTACTATAAGAAGAA+TGG | - | chr4.1:9428430-9428449 | None:intergenic | 20.0% |
| !! | TATCAAAATCTAATGTTACT+AGG | + | chr4.1:9425406-9425425 | MS.gene70311:intron | 20.0% |
| !! | TATTAATAAGGGGAAATATT+TGG | + | chr4.1:9427753-9427772 | MS.gene70311:intron | 20.0% |
| !! | TTAGAAATTAGCATTAACAT+CGG | - | chr4.1:9427010-9427029 | None:intergenic | 20.0% |
| !! | TTCAATCAATCAAATATTAC+AGG | + | chr4.1:9425098-9425117 | MS.gene70311:intron | 20.0% |
| !! | TTGTTACCAATAACAATATA+TGG | - | chr4.1:9426743-9426762 | None:intergenic | 20.0% |
| !!! | AAATTGGTAGTATTAATAAG+GGG | + | chr4.1:9427743-9427762 | MS.gene70311:intron | 20.0% |
| !!! | ACAAATTGGTAGTATTAATA+AGG | + | chr4.1:9427741-9427760 | MS.gene70311:intron | 20.0% |
| !!! | CAAATTGGTAGTATTAATAA+GGG | + | chr4.1:9427742-9427761 | MS.gene70311:intron | 20.0% |
| !!! | CAACAACAATAAATTTTGTA+AGG | - | chr4.1:9428813-9428832 | None:intergenic | 20.0% |
| !!! | CTATTTCATCTGATATTTTA+TGG | - | chr4.1:9427311-9427330 | None:intergenic | 20.0% |
| !!! | TTATTTTCTTCACTAATGTT+TGG | - | chr4.1:9426058-9426077 | None:intergenic | 20.0% |
| ! | AACAATACATGTATCTTAAG+GGG | + | chr4.1:9427782-9427801 | MS.gene70311:intron | 25.0% |
| ! | AAGTAGGTTAACTTTGTATA+TGG | + | chr4.1:9425122-9425141 | MS.gene70311:intron | 25.0% |
| ! | AATAGAGAGAATCATAAAGT+AGG | - | chr4.1:9426117-9426136 | None:intergenic | 25.0% |
| ! | AATTCATTATCCATAATGAG+TGG | - | chr4.1:9428180-9428199 | None:intergenic | 25.0% |
| ! | ACTTAAGCCTACTTTATAAA+TGG | - | chr4.1:9425457-9425476 | None:intergenic | 25.0% |
| ! | AGAACAATACATGTATCTTA+AGG | + | chr4.1:9427780-9427799 | MS.gene70311:intron | 25.0% |
| ! | AGTAGGTTAACTTTGTATAT+GGG | + | chr4.1:9425123-9425142 | MS.gene70311:intron | 25.0% |
| ! | ATAGAGAGAATCATAAAGTA+GGG | - | chr4.1:9426116-9426135 | None:intergenic | 25.0% |
| ! | ATCAAATATTACAGGAAAGT+AGG | + | chr4.1:9425106-9425125 | MS.gene70311:intron | 25.0% |
| ! | ATTAACATCGGAATTATTCA+TGG | - | chr4.1:9426998-9427017 | None:intergenic | 25.0% |
| ! | ATTTGAAAAACTCTCAGATA+TGG | + | chr4.1:9425506-9425525 | MS.gene70311:intron | 25.0% |
| ! | CTAAAATTAGCCGTAATATA+TGG | + | chr4.1:9424910-9424929 | MS.gene70311:intron | 25.0% |
| ! | GAACAATACATGTATCTTAA+GGG | + | chr4.1:9427781-9427800 | MS.gene70311:intron | 25.0% |
| ! | GATGTTAATGCTAATTTCTA+AGG | + | chr4.1:9427009-9427028 | MS.gene70311:intron | 25.0% |
| ! | GTATACATGTTTAGATTTGA+AGG | + | chr4.1:9426556-9426575 | MS.gene70311:intron | 25.0% |
| ! | TATACATTCATTACACAACA+AGG | - | chr4.1:9427651-9427670 | None:intergenic | 25.0% |
| ! | TCAAGTATTAACAAGTATAG+TGG | + | chr4.1:9427036-9427055 | MS.gene70311:intron | 25.0% |
| ! | TTAATACTACCAATTTGTCT+TGG | - | chr4.1:9427739-9427758 | None:intergenic | 25.0% |
| ! | TTCTATAGAGAATATGGAAT+AGG | + | chr4.1:9427518-9427537 | MS.gene70311:intron | 25.0% |
| ! | TTGACAAATGTCAATTTCTT+TGG | + | chr4.1:9425026-9425045 | MS.gene70311:intron | 25.0% |
| ! | TTGGAATTTAGAAATCCATT+GGG | + | chr4.1:9424782-9424801 | MS.gene70311:intron | 25.0% |
| ! | TTTCAAAATCAAAAGGCTAA+TGG | + | chr4.1:9428094-9428113 | MS.gene70311:intron | 25.0% |
| !! | ATGATCAGTCTTATAATACA+GGG | + | chr4.1:9428742-9428761 | MS.gene70311:CDS | 25.0% |
| !! | ATTAAGATGTCTCTGAAAAA+TGG | - | chr4.1:9426141-9426160 | None:intergenic | 25.0% |
| !! | GTTTAAGTTAGAATTAACTC+TGG | + | chr4.1:9424365-9424384 | MS.gene70311:intron | 25.0% |
| !! | TTTGGAATTTAGAAATCCAT+TGG | + | chr4.1:9424781-9424800 | MS.gene70311:intron | 25.0% |
| !! | TTTTGAATTGGTTAAAGTTC+AGG | + | chr4.1:9425248-9425267 | MS.gene70311:intron | 25.0% |
| !!! | ACTTTACTGTGATTTTTTAG+CGG | + | chr4.1:9424696-9424715 | MS.gene70311:intron | 25.0% |
| !!! | ATCACAGGACTTTTAAAAAT+TGG | - | chr4.1:9427921-9427940 | None:intergenic | 25.0% |
| !!! | ATGGAATAGCTTTGTTTTAA+TGG | - | chr4.1:9427224-9427243 | None:intergenic | 25.0% |
| !!! | ATTTTTTTATGACGTGAATC+AGG | - | chr4.1:9425710-9425729 | None:intergenic | 25.0% |
| !!! | CTCTTTTATTCACTGATTAA+TGG | + | chr4.1:9426495-9426514 | MS.gene70311:CDS | 25.0% |
| !!! | GAAATAGAGCTATTTTAGAA+GGG | + | chr4.1:9427324-9427343 | MS.gene70311:intron | 25.0% |
| !!! | GATTTTGATAGAATTGATTC+CGG | + | chr4.1:9424296-9424315 | MS.gene70311:intron | 25.0% |
| !!! | GTTTCTAAGGTACATAAATA+AGG | - | chr4.1:9424646-9424665 | None:intergenic | 25.0% |
| !!! | TGAAATAGAGCTATTTTAGA+AGG | + | chr4.1:9427323-9427342 | MS.gene70311:intron | 25.0% |
| !!! | TGGAATAGCTTTGTTTTAAT+GGG | - | chr4.1:9427223-9427242 | None:intergenic | 25.0% |
| AAAAGAAGCAAGGTATGATA+AGG | + | chr4.1:9428478-9428497 | MS.gene70311:CDS | 30.0% | |
| AAACATTGAAGAAACACAGA+TGG | - | chr4.1:9427950-9427969 | None:intergenic | 30.0% | |
| AACCAGACAAAGAAAATCTA+GGG | - | chr4.1:9428963-9428982 | None:intergenic | 30.0% | |
| ACAAATAGTTAAATGCCAAG+TGG | - | chr4.1:9427286-9427305 | None:intergenic | 30.0% | |
| AGAGTCAGATTAGTAAAAAC+AGG | - | chr4.1:9427254-9427273 | None:intergenic | 30.0% | |
| AGATTTCTTTGTTGAACTGT+GGG | + | chr4.1:9426434-9426453 | MS.gene70311:CDS | 30.0% | |
| AGGTAAGCATTTCACATTAT+AGG | + | chr4.1:9426283-9426302 | MS.gene70311:intron | 30.0% | |
| AGTAAAGCAGATCATTTCTA+TGG | - | chr4.1:9427379-9427398 | None:intergenic | 30.0% | |
| AGTACAATCAATTAAGCCTA+AGG | - | chr4.1:9425875-9425894 | None:intergenic | 30.0% | |
| AGTGACACAAAATTTAGTTG+AGG | - | chr4.1:9426924-9426943 | None:intergenic | 30.0% | |
| ATAAATGTACTCTACACACT+CGG | - | chr4.1:9424943-9424962 | None:intergenic | 30.0% | |
| ATAAGCACAACTGATACTTT+AGG | - | chr4.1:9428313-9428332 | None:intergenic | 30.0% | |
| ATGTTTAGATTTGAAGGAAG+TGG | + | chr4.1:9426562-9426581 | MS.gene70311:intron | 30.0% | |
| ATTGTTTGAACTTCATTTGC+AGG | + | chr4.1:9426587-9426606 | MS.gene70311:intron | 30.0% | |
| CAAATGTGTCTATACTCAAA+GGG | - | chr4.1:9427700-9427719 | None:intergenic | 30.0% | |
| CCAATAACAATATATGGAAC+AGG | - | chr4.1:9426737-9426756 | None:intergenic | 30.0% | |
| CCTGTTCCATATATTGTTAT+TGG | + | chr4.1:9426734-9426753 | MS.gene70311:CDS | 30.0% | |
| CTACTTCTAATCTAGATAGT+TGG | - | chr4.1:9428020-9428039 | None:intergenic | 30.0% | |
| GGTAAGCATTTCACATTATA+GGG | + | chr4.1:9426284-9426303 | MS.gene70311:intron | 30.0% | |
| GTAAAGCAGATCATTTCTAT+GGG | - | chr4.1:9427378-9427397 | None:intergenic | 30.0% | |
| TAAACGATGAATAGTGTGTT+TGG | + | chr4.1:9425943-9425962 | MS.gene70311:intron | 30.0% | |
| TAAGTTAGAATTAACTCTGG+AGG | + | chr4.1:9424368-9424387 | MS.gene70311:intron | 30.0% | |
| TAGAGAGAATCATAAAGTAG+GGG | - | chr4.1:9426115-9426134 | None:intergenic | 30.0% | |
| TAGATGAAATATCTTCTCAG+CGG | + | chr4.1:9428697-9428716 | MS.gene70311:CDS | 30.0% | |
| TATGATGAATTTAACTCAGC+TGG | + | chr4.1:9424600-9424619 | MS.gene70311:intron | 30.0% | |
| TCAAATGTGTCTATACTCAA+AGG | - | chr4.1:9427701-9427720 | None:intergenic | 30.0% | |
| TCAGTGAATAAAAGAGAGAT+CGG | - | chr4.1:9426491-9426510 | None:intergenic | 30.0% | |
| TCTTCTCCTAATCAACTAAA+AGG | - | chr4.1:9428610-9428629 | None:intergenic | 30.0% | |
| TTAGTTCACCTTATCGTTAA+AGG | + | chr4.1:9426210-9426229 | MS.gene70311:CDS | 30.0% | |
| TTCTTTATAGCCACTCATTA+TGG | + | chr4.1:9428167-9428186 | MS.gene70311:intron | 30.0% | |
| ! | ATCATCTAAAGCATAGAAAG+TGG | - | chr4.1:9426964-9426983 | None:intergenic | 30.0% |
| ! | CTTAAGGGGTCTTATAAATA+GGG | + | chr4.1:9427796-9427815 | MS.gene70311:intron | 30.0% |
| ! | GATGATCAGTCTTATAATAC+AGG | + | chr4.1:9428741-9428760 | MS.gene70311:CDS | 30.0% |
| ! | TCTTAAGGGGTCTTATAAAT+AGG | + | chr4.1:9427795-9427814 | MS.gene70311:intron | 30.0% |
| ! | TGATATTTTCTCATTCTTGC+AGG | + | chr4.1:9426171-9426190 | MS.gene70311:intron | 30.0% |
| !! | TTCTTCAACTTACTTTTAGC+CGG | - | chr4.1:9424318-9424337 | None:intergenic | 30.0% |
| !! | TTTGTTCTGTACTTTAAAGC+TGG | + | chr4.1:9427080-9427099 | MS.gene70311:intron | 30.0% |
| !!! | CTTTACTGTGATTTTTTAGC+GGG | + | chr4.1:9424697-9424716 | MS.gene70311:intron | 30.0% |
| !!! | TTTACTGTGATTTTTTAGCG+GGG | + | chr4.1:9424698-9424717 | MS.gene70311:intron | 30.0% |
| !!! | TTTTTGAAGTGTGCAAGTTA+TGG | + | chr4.1:9424543-9424562 | MS.gene70311:intron | 30.0% |
| AACATCGGAATTATTCATGG+AGG | - | chr4.1:9426995-9427014 | None:intergenic | 35.0% | |
| AACGATAAGGTGAACTAAAG+AGG | - | chr4.1:9426208-9426227 | None:intergenic | 35.0% | |
| AAGCTACTATTTGTAGCTTG+TGG | - | chr4.1:9426003-9426022 | None:intergenic | 35.0% | |
| AATTTCCATAAGTAGTGTGC+TGG | - | chr4.1:9426374-9426393 | None:intergenic | 35.0% | |
| ACACTGTTTATTCGATCACA+TGG | - | chr4.1:9427897-9427916 | None:intergenic | 35.0% | |
| ACCATTTCAGATACAGTGAT+AGG | - | chr4.1:9427156-9427175 | None:intergenic | 35.0% | |
| AGAACTTAGAAGTAGGAAGA+TGG | + | chr4.1:9424975-9424994 | MS.gene70311:intron | 35.0% | |
| AGAGAGAATCATAAAGTAGG+GGG | - | chr4.1:9426114-9426133 | None:intergenic | 35.0% | |
| AGCTGATATTGTTGCAAAAG+AGG | + | chr4.1:9426763-9426782 | MS.gene70311:CDS | 35.0% | |
| AGGGAGAATAAGGAACATAA+CGG | + | chr4.1:9424150-9424169 | MS.gene70311:CDS | 35.0% | |
| AGTATTTCGTCAAATCAAGC+AGG | - | chr4.1:9425616-9425635 | None:intergenic | 35.0% | |
| ATTCCTCTATGACAAATCTG+TGG | - | chr4.1:9425482-9425501 | None:intergenic | 35.0% | |
| CACACTACTTATGGAAATTC+TGG | + | chr4.1:9426375-9426394 | MS.gene70311:CDS | 35.0% | |
| CATCCATCAACTAAACTCTA+AGG | - | chr4.1:9427180-9427199 | None:intergenic | 35.0% | |
| CCATTTCAGATACAGTGATA+GGG | - | chr4.1:9427155-9427174 | None:intergenic | 35.0% | |
| CTACTATAAGAAGAATGGAC+TGG | - | chr4.1:9428425-9428444 | None:intergenic | 35.0% | |
| CTGTAATGCAAACGACTATA+TGG | + | chr4.1:9425179-9425198 | MS.gene70311:intron | 35.0% | |
| GAACCAGACAAAGAAAATCT+AGG | - | chr4.1:9428964-9428983 | None:intergenic | 35.0% | |
| GAGATTTCTTTGTTGAACTG+TGG | + | chr4.1:9426433-9426452 | MS.gene70311:CDS | 35.0% | |
| GCTGATATTGTTGCAAAAGA+GGG | + | chr4.1:9426764-9426783 | MS.gene70311:CDS | 35.0% | |
| GTACCTTAGAGTTTAGTTGA+TGG | + | chr4.1:9427174-9427193 | MS.gene70311:intron | 35.0% | |
| GTCAGATTAGTAAAAACAGG+AGG | - | chr4.1:9427251-9427270 | None:intergenic | 35.0% | |
| TAAAGCACAAAGCTCTTCTA+AGG | - | chr4.1:9424676-9424695 | None:intergenic | 35.0% | |
| TACTGTACAACCAATTGTCT+GGG | - | chr4.1:9426256-9426275 | None:intergenic | 35.0% | |
| TATGACGTGAATCAGGAAAA+GGG | - | chr4.1:9425703-9425722 | None:intergenic | 35.0% | |
| TCAAGACTTGAGTGAATCAT+AGG | + | chr4.1:9424343-9424362 | MS.gene70311:intron | 35.0% | |
| TCCTAATCAACTAAAAGGAG+AGG | - | chr4.1:9428605-9428624 | None:intergenic | 35.0% | |
| TTATGACGTGAATCAGGAAA+AGG | - | chr4.1:9425704-9425723 | None:intergenic | 35.0% | |
| TTCCTCTATGACAAATCTGT+GGG | - | chr4.1:9425481-9425500 | None:intergenic | 35.0% | |
| ! | CTTTTCAGTCCAAGACAAAT+TGG | + | chr4.1:9427727-9427746 | MS.gene70311:intron | 35.0% |
| ! | GAATAGTGTGTTTGGAATTG+CGG | + | chr4.1:9425951-9425970 | MS.gene70311:intron | 35.0% |
| ! | GGAAGCATGTTATACTTGTA+CGG | - | chr4.1:9428856-9428875 | None:intergenic | 35.0% |
| ! | TACCCTAGATTTTCTTTGTC+TGG | + | chr4.1:9428958-9428977 | MS.gene70311:CDS | 35.0% |
| ! | TACTATTTGTAGCTTGTGGT+TGG | - | chr4.1:9425999-9426018 | None:intergenic | 35.0% |
| ! | TGTGATTAAGTTTTTCCGCA+TGG | + | chr4.1:9428505-9428524 | MS.gene70311:CDS | 35.0% |
| !! | AAGTCAAGTTGATTGAGTGA+AGG | + | chr4.1:9424750-9424769 | MS.gene70311:intron | 35.0% |
| !! | ACCTCTCCTTTTAGTTGATT+AGG | + | chr4.1:9428601-9428620 | MS.gene70311:intron | 35.0% |
| !! | AGTTTAGTTGATGGATGAAG+AGG | + | chr4.1:9427183-9427202 | MS.gene70311:intron | 35.0% |
| !! | CTGCTTTAGAACTTAGAAGT+AGG | + | chr4.1:9424968-9424987 | MS.gene70311:intron | 35.0% |
| !!! | TTTTTTTGTCGGATGACTAC+AGG | + | chr4.1:9428451-9428470 | MS.gene70311:intron | 35.0% |
| ACTTAGAAGTAGGAAGATGG+TGG | + | chr4.1:9424978-9424997 | MS.gene70311:intron | 40.0% | |
| AGAAGCAAGGTATGATAAGG+AGG | + | chr4.1:9428481-9428500 | MS.gene70311:CDS | 40.0% | |
| AGTAAAAACAGGAGGCAACA+TGG | - | chr4.1:9427243-9427262 | None:intergenic | 40.0% | |
| ATGAAATACCTGCACCTACA+TGG | + | chr4.1:9428640-9428659 | MS.gene70311:CDS | 40.0% | |
| ATGGAATAGGTTACTCTGTC+AGG | + | chr4.1:9427531-9427550 | MS.gene70311:intron | 40.0% | |
| ATTCGCTGAGAAGATCTTTG+AGG | - | chr4.1:9428678-9428697 | None:intergenic | 40.0% | |
| CAAAGACATTACTGACCATG+CGG | - | chr4.1:9428523-9428542 | None:intergenic | 40.0% | |
| CACAGATGGTTGAAAATCAC+AGG | - | chr4.1:9427936-9427955 | None:intergenic | 40.0% | |
| CATTTCCAGCACACTACTTA+TGG | + | chr4.1:9426366-9426385 | MS.gene70311:intron | 40.0% | |
| CCCTATCACTGTATCTGAAA+TGG | + | chr4.1:9427152-9427171 | MS.gene70311:intron | 40.0% | |
| CCTAAGGATAGACAACTTGA+GGG | - | chr4.1:9425859-9425878 | None:intergenic | 40.0% | |
| CGGCATGACACCATATATTA+CGG | - | chr4.1:9424923-9424942 | None:intergenic | 40.0% | |
| CTACTGTACAACCAATTGTC+TGG | - | chr4.1:9426257-9426276 | None:intergenic | 40.0% | |
| CTATCCTCAACAACCAGTTT+CGG | + | chr4.1:9428918-9428937 | MS.gene70311:CDS | 40.0% | |
| GACTCTCTACTATATCCACT+TGG | + | chr4.1:9427268-9427287 | MS.gene70311:intron | 40.0% | |
| GAGAATAAGGAACATAACGG+TGG | + | chr4.1:9424153-9424172 | MS.gene70311:CDS | 40.0% | |
| GAGAGAATCATAAAGTAGGG+GGG | - | chr4.1:9426113-9426132 | None:intergenic | 40.0% | |
| GATGAATTTAACTCAGCTGG+TGG | + | chr4.1:9424603-9424622 | MS.gene70311:intron | 40.0% | |
| GCACTAGTACAAAATCCCAA+TGG | - | chr4.1:9424800-9424819 | None:intergenic | 40.0% | |
| GTAGTGTGCTGGAAATGAAA+CGG | - | chr4.1:9426363-9426382 | None:intergenic | 40.0% | |
| GTATATGGGTGTTTGACTCT+AGG | + | chr4.1:9425137-9425156 | MS.gene70311:intron | 40.0% | |
| TCTGCTTTACTTGACTGATG+AGG | + | chr4.1:9427388-9427407 | MS.gene70311:intron | 40.0% | |
| TGGGAGAACCTTTAACGATA+AGG | - | chr4.1:9426221-9426240 | None:intergenic | 40.0% | |
| TGGTTGTACAGTAGATGTGA+AGG | + | chr4.1:9426263-9426282 | MS.gene70311:CDS | 40.0% | |
| TTCCCACAGATTTGTCATAG+AGG | + | chr4.1:9425476-9425495 | MS.gene70311:intron | 40.0% | |
| TTCTCATTCTTGCAGGTGTT+GGG | + | chr4.1:9426178-9426197 | MS.gene70311:intron | 40.0% | |
| TTTCTCATTCTTGCAGGTGT+TGG | + | chr4.1:9426177-9426196 | MS.gene70311:intron | 40.0% | |
| ! | AAGGGCATAAGTTTGGACTT+GGG | - | chr4.1:9425899-9425918 | None:intergenic | 40.0% |
| ! | AATTTTGTCTCCTGCAGTAG+TGG | + | chr4.1:9424441-9424460 | MS.gene70311:intron | 40.0% |
| ! | AGGGGTCTTATAAATAGGGA+CGG | + | chr4.1:9427800-9427819 | MS.gene70311:intron | 40.0% |
| ! | CCATCTGACTTTCTGTTTTC+CGG | - | chr4.1:9425764-9425783 | None:intergenic | 40.0% |
| ! | CTAAGGTAAGCTGGTTTCTA+AGG | - | chr4.1:9424659-9424678 | None:intergenic | 40.0% |
| !! | AAAGCTCTTCTAAGGTAAGC+TGG | - | chr4.1:9424668-9424687 | None:intergenic | 40.0% |
| !! | ACATATGAGAGAAGTGCCTA+AGG | - | chr4.1:9427572-9427591 | None:intergenic | 40.0% |
| !! | AGATCTTTGAGGTGAAGGAA+TGG | - | chr4.1:9428667-9428686 | None:intergenic | 40.0% |
| !! | CATATGAGAGAAGTGCCTAA+GGG | - | chr4.1:9427571-9427590 | None:intergenic | 40.0% |
| !! | TCAAGTTGATTGAGTGAAGG+AGG | + | chr4.1:9424753-9424772 | MS.gene70311:intron | 40.0% |
| !! | TGAGAAGATCTTTGAGGTGA+AGG | - | chr4.1:9428672-9428691 | None:intergenic | 40.0% |
| !! | TTCTGTACTTTAAAGCTGGC+TGG | + | chr4.1:9427084-9427103 | MS.gene70311:intron | 40.0% |
| AACCAAACACACTCGTTGAG+AGG | - | chr4.1:9424259-9424278 | None:intergenic | 45.0% | |
| ACCAAACACACTCGTTGAGA+GGG | - | chr4.1:9424258-9424277 | None:intergenic | 45.0% | |
| AGAATCATAAAGTAGGGGGG+AGG | - | chr4.1:9426110-9426129 | None:intergenic | 45.0% | |
| AGCTCTTCAAGTAGCCTCAA+AGG | + | chr4.1:9426399-9426418 | MS.gene70311:CDS | 45.0% | |
| AGTTGACTGATGCACATCGA+AGG | - | chr4.1:9425918-9425937 | None:intergenic | 45.0% | |
| ATGCTTAGTTCCACTACTGC+AGG | - | chr4.1:9424454-9424473 | None:intergenic | 45.0% | |
| CACACACAGCTATAAAAGCG+AGG | - | chr4.1:9425338-9425357 | None:intergenic | 45.0% | |
| CCGGAAAACAGAAAGTCAGA+TGG | + | chr4.1:9425761-9425780 | MS.gene70311:intron | 45.0% | |
| CGTACTTTCGAGATCTATGC+TGG | + | chr4.1:9425050-9425069 | MS.gene70311:intron | 45.0% | |
| CTCTCTCAGAATCACCTTTG+AGG | - | chr4.1:9426416-9426435 | None:intergenic | 45.0% | |
| GAAGACGAGTTTGCAGAAGT+GGG | + | chr4.1:9426646-9426665 | MS.gene70311:CDS | 45.0% | |
| GAATCATAAAGTAGGGGGGA+GGG | - | chr4.1:9426109-9426128 | None:intergenic | 45.0% | |
| GATGTGCATCAGTCAACTGT+AGG | + | chr4.1:9425920-9425939 | MS.gene70311:intron | 45.0% | |
| GCCTAAGGATAGACAACTTG+AGG | - | chr4.1:9425860-9425879 | None:intergenic | 45.0% | |
| GGTTGTTGAGGATAGAGTGT+GGG | - | chr4.1:9428913-9428932 | None:intergenic | 45.0% | |
| GTACAACCAATTGTCTGGGA+AGG | - | chr4.1:9426252-9426271 | None:intergenic | 45.0% | |
| GTCCTATGTAGAAGACCCTT+AGG | + | chr4.1:9427553-9427572 | MS.gene70311:intron | 45.0% | |
| GTTGAACTGTGGGATGTATC+AGG | + | chr4.1:9426444-9426463 | MS.gene70311:CDS | 45.0% | |
| GTTGACTGATGCACATCGAA+GGG | - | chr4.1:9425917-9425936 | None:intergenic | 45.0% | |
| GTTGATTGAGTGAAGGAGGT+TGG | + | chr4.1:9424757-9424776 | MS.gene70311:intron | 45.0% | |
| TACAGGCAGCAAAAGAAGCA+AGG | + | chr4.1:9428468-9428487 | MS.gene70311:intron | 45.0% | |
| TAGACAACTTGAGGGCAGTT+TGG | - | chr4.1:9425851-9425870 | None:intergenic | 45.0% | |
| TAGCTTTCAGAGACCGAAAC+TGG | - | chr4.1:9428934-9428953 | None:intergenic | 45.0% | |
| TGAGTGAAGGAGGTTGGATT+TGG | + | chr4.1:9424763-9424782 | MS.gene70311:intron | 45.0% | |
| TGCCACTGAAACTCGTAGAT+CGG | + | chr4.1:9424817-9424836 | MS.gene70311:intron | 45.0% | |
| TGCCTAAGGGTCTTCTACAT+AGG | - | chr4.1:9427558-9427577 | None:intergenic | 45.0% | |
| TGGTTGTTGAGGATAGAGTG+TGG | - | chr4.1:9428914-9428933 | None:intergenic | 45.0% | |
| TGTTGATGTTGCACGCCAAT+GGG | + | chr4.1:9426811-9426830 | MS.gene70311:CDS | 45.0% | |
| TTGTTGATGTTGCACGCCAA+TGG | + | chr4.1:9426810-9426829 | MS.gene70311:CDS | 45.0% | |
| ! | CACATCGAAGGGCATAAGTT+TGG | - | chr4.1:9425906-9425925 | None:intergenic | 45.0% |
| ! | CCCTCAAGTTGTCTATCCTT+AGG | + | chr4.1:9425856-9425875 | MS.gene70311:intron | 45.0% |
| ! | GAAGGGCATAAGTTTGGACT+TGG | - | chr4.1:9425900-9425919 | None:intergenic | 45.0% |
| ! | GGGACATTTTCAGCTCCTTT+GGG | + | chr4.1:9426689-9426708 | MS.gene70311:CDS | 45.0% |
| ! | TGGGACATTTTCAGCTCCTT+TGG | + | chr4.1:9426688-9426707 | MS.gene70311:CDS | 45.0% |
| ! | TTGAGGCGCTTACTGCAATA+AGG | - | chr4.1:9426907-9426926 | None:intergenic | 45.0% |
| !! | TTGACTTTTTCCACACGACG+CGG | - | chr4.1:9424737-9424756 | None:intergenic | 45.0% |
| !!! | CTGTGATTTTTTAGCGGGGA+TGG | + | chr4.1:9424702-9424721 | MS.gene70311:intron | 45.0% |
| !!! | TTTTCAGCTCCTTTGGGATC+TGG | + | chr4.1:9426695-9426714 | MS.gene70311:CDS | 45.0% |
| !! | AATTATAAATATATCAAATT+CGG | - | chr4.1:9424489-9424508 | None:intergenic | 5.0% |
| !! | ATTAATTATATAATAAATAC+CGG | + | chr4.1:9425742-9425761 | MS.gene70311:intron | 5.0% |
| !! | TAAATTTAAACAAAAAATAA+AGG | - | chr4.1:9428556-9428575 | None:intergenic | 5.0% |
| !!! | TATTTTTATAAATTAACTTT+GGG | + | chr4.1:9425377-9425396 | MS.gene70311:intron | 5.0% |
| !!! | TATTTTTTGTTTAAATTTAT+GGG | + | chr4.1:9428557-9428576 | MS.gene70311:intron | 5.0% |
| !!! | TTATTTTTTGTTTAAATTTA+TGG | + | chr4.1:9428556-9428575 | MS.gene70311:intron | 5.0% |
| !!! | TTTGATATATTTATAATTTT+TGG | + | chr4.1:9424491-9424510 | MS.gene70311:intron | 5.0% |
| ATGGAACAGGAAGACCACCA+GGG | - | chr4.1:9426724-9426743 | None:intergenic | 50.0% | |
| CAGCTGAGATTGCTGCAACT+GGG | + | chr4.1:9426669-9426688 | MS.gene70311:CDS | 50.0% | |
| CCAGGAAAACTCTCAGTCAG+TGG | - | chr4.1:9426875-9426894 | None:intergenic | 50.0% | |
| CGAAGACGAGTTTGCAGAAG+TGG | + | chr4.1:9426645-9426664 | MS.gene70311:CDS | 50.0% | |
| CTGAAACTCGTAGATCGGGA+CGG | + | chr4.1:9424822-9424841 | MS.gene70311:intron | 50.0% | |
| GAGACCGAAACTGGTTGTTG+AGG | - | chr4.1:9428925-9428944 | None:intergenic | 50.0% | |
| GCCACTGAAACTCGTAGATC+GGG | + | chr4.1:9424818-9424837 | MS.gene70311:intron | 50.0% | |
| GGAACGTGAGAGGGAGAATA+AGG | + | chr4.1:9424140-9424159 | MS.gene70311:CDS | 50.0% | |
| GGAGTTAGATTGCGTTGAGC+CGG | - | chr4.1:9428886-9428905 | None:intergenic | 50.0% | |
| GGTGAAGGAATGGACCATGT+AGG | - | chr4.1:9428657-9428676 | None:intergenic | 50.0% | |
| GTGTGCTGGAAATGAAACGG+AGG | - | chr4.1:9426360-9426379 | None:intergenic | 50.0% | |
| TAACATGCTTCCCCCACTTC+CGG | + | chr4.1:9428864-9428883 | MS.gene70311:CDS | 50.0% | |
| TATGGAACAGGAAGACCACC+AGG | - | chr4.1:9426725-9426744 | None:intergenic | 50.0% | |
| TCCCGATCTACGAGTTTCAG+TGG | - | chr4.1:9424822-9424841 | None:intergenic | 50.0% | |
| TCCCTCTCAACGAGTGTGTT+TGG | + | chr4.1:9424254-9424273 | MS.gene70311:intron | 50.0% | |
| TGTTGAGGATAGAGTGTGGG+TGG | - | chr4.1:9428910-9428929 | None:intergenic | 50.0% | |
| ! | ACTGAGAGTTTTCCTGGTGG+TGG | + | chr4.1:9426878-9426897 | MS.gene70311:CDS | 50.0% |
| ! | CAAGTCAGAGTGCTCGTTGT+TGG | + | chr4.1:9424189-9424208 | MS.gene70311:CDS | 50.0% |
| ! | CATAACGGTGGAGTGCTTTG+TGG | + | chr4.1:9424165-9424184 | MS.gene70311:CDS | 50.0% |
| ! | CTGACTGAGAGTTTTCCTGG+TGG | + | chr4.1:9426875-9426894 | MS.gene70311:CDS | 50.0% |
| !! | CCACTGACTGAGAGTTTTCC+TGG | + | chr4.1:9426872-9426891 | MS.gene70311:CDS | 50.0% |
| !! | TGACTTTTTCCACACGACGC+GGG | - | chr4.1:9424736-9424755 | None:intergenic | 50.0% |
| AACCCTGCTTCTCGACCCAT+TGG | - | chr4.1:9426829-9426848 | None:intergenic | 55.0% | |
| AGATTGCGTTGAGCCGGAAG+TGG | - | chr4.1:9428880-9428899 | None:intergenic | 55.0% | |
| AGGGCAAGCAGTCACATGCT+CGG | - | chr4.1:9426090-9426109 | None:intergenic | 55.0% | |
| ATTGCGTTGAGCCGGAAGTG+GGG | - | chr4.1:9428878-9428897 | None:intergenic | 55.0% | |
| GAAAATTTCCCCGCGTCGTG+TGG | + | chr4.1:9424724-9424743 | MS.gene70311:intron | 55.0% | |
| GATTGCGTTGAGCCGGAAGT+GGG | - | chr4.1:9428879-9428898 | None:intergenic | 55.0% | |
| GCAGCTGAGATTGCTGCAAC+TGG | + | chr4.1:9426668-9426687 | MS.gene70311:CDS | 55.0% | |
| GCTCGTCCTTCCCAGACAAT+TGG | + | chr4.1:9426243-9426262 | MS.gene70311:CDS | 55.0% | |
| GGAATGGACCATGTAGGTGC+AGG | - | chr4.1:9428651-9428670 | None:intergenic | 55.0% | |
| GTCTGGGAAGGACGAGCAAT+GGG | - | chr4.1:9426240-9426259 | None:intergenic | 55.0% | |
| TGAGGATAGAGTGTGGGTGG+TGG | - | chr4.1:9428907-9428926 | None:intergenic | 55.0% | |
| TGTCTGGGAAGGACGAGCAA+TGG | - | chr4.1:9426241-9426260 | None:intergenic | 55.0% | |
| ! | GTTGCAAAAGAGGGTGCGAG+AGG | + | chr4.1:9426773-9426792 | MS.gene70311:CDS | 55.0% |
| !! | GACTTTTTCCACACGACGCG+GGG | - | chr4.1:9424735-9424754 | None:intergenic | 55.0% |
| !! | GTGCTCGTTGTTGGTGACTC+AGG | + | chr4.1:9424198-9424217 | MS.gene70311:CDS | 55.0% |
| !! | GTTCTGGAGGGAACGTGAGA+GGG | + | chr4.1:9424131-9424150 | MS.gene70311:CDS | 55.0% |
| !! | TCAGCTCCTTTGGGATCTGG+CGG | + | chr4.1:9426698-9426717 | MS.gene70311:CDS | 55.0% |
| !! | TGTTCTGGAGGGAACGTGAG+AGG | + | chr4.1:9424130-9424149 | MS.gene70311:CDS | 55.0% |
| !!! | GAGAGTTTTCCTGGTGGTGG+AGG | + | chr4.1:9426881-9426900 | MS.gene70311:CDS | 55.0% |
| ACGCCAATGGGTCGAGAAGC+AGG | + | chr4.1:9426823-9426842 | MS.gene70311:CDS | 60.0% | |
| AGTCAGTGGAAGCTCCTCGC+TGG | - | chr4.1:9426861-9426880 | None:intergenic | 60.0% | |
| AGTGGAAGCTCCTCGCTGGA+TGG | - | chr4.1:9426857-9426876 | None:intergenic | 60.0% | |
| CGCCAATGGGTCGAGAAGCA+GGG | + | chr4.1:9426824-9426843 | MS.gene70311:CDS | 60.0% | |
| GCAATAAGGCCTCCACCACC+AGG | - | chr4.1:9426893-9426912 | None:intergenic | 60.0% | |
| GGAGCTGAGCGAAGCTAGTG+TGG | + | chr4.1:9425269-9425288 | MS.gene70311:intron | 60.0% | |
| TTGCGTTGAGCCGGAAGTGG+GGG | - | chr4.1:9428877-9428896 | None:intergenic | 60.0% | |
| ! | GGGTTTGCTTCCATCCAGCG+AGG | + | chr4.1:9426844-9426863 | MS.gene70311:CDS | 60.0% |
| AGGGTGCGAGAGGAAGCAGC+GGG | + | chr4.1:9426783-9426802 | MS.gene70311:CDS | 65.0% | |
| ! | GAGGGTGCGAGAGGAAGCAG+CGG | + | chr4.1:9426782-9426801 | MS.gene70311:CDS | 65.0% |
| CCAGGGCCGCCAGATCCCAA+AGG | - | chr4.1:9426707-9426726 | None:intergenic | 70.0% | |
| TTGGGATCTGGCGGCCCTGG+TGG | + | chr4.1:9426707-9426726 | MS.gene70311:CDS | 70.0% | |
| !! | CCTTTGGGATCTGGCGGCCC+TGG | + | chr4.1:9426704-9426723 | MS.gene70311:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 9424129 | 9429035 | 9424129 | ID=MS.gene70311 |
| chr4.1 | mRNA | 9424129 | 9429035 | 9424129 | ID=MS.gene70311.t1;Parent=MS.gene70311 |
| chr4.1 | exon | 9424129 | 9424219 | 9424129 | ID=MS.gene70311.t1.exon1;Parent=MS.gene70311.t1 |
| chr4.1 | CDS | 9424129 | 9424219 | 9424129 | ID=cds.MS.gene70311.t1;Parent=MS.gene70311.t1 |
| chr4.1 | exon | 9426193 | 9426284 | 9426193 | ID=MS.gene70311.t1.exon2;Parent=MS.gene70311.t1 |
| chr4.1 | CDS | 9426193 | 9426284 | 9426193 | ID=cds.MS.gene70311.t1;Parent=MS.gene70311.t1 |
| chr4.1 | exon | 9426375 | 9426516 | 9426375 | ID=MS.gene70311.t1.exon3;Parent=MS.gene70311.t1 |
| chr4.1 | CDS | 9426375 | 9426516 | 9426375 | ID=cds.MS.gene70311.t1;Parent=MS.gene70311.t1 |
| chr4.1 | exon | 9426609 | 9426913 | 9426609 | ID=MS.gene70311.t1.exon4;Parent=MS.gene70311.t1 |
| chr4.1 | CDS | 9426609 | 9426913 | 9426609 | ID=cds.MS.gene70311.t1;Parent=MS.gene70311.t1 |
| chr4.1 | exon | 9428473 | 9428526 | 9428473 | ID=MS.gene70311.t1.exon5;Parent=MS.gene70311.t1 |
| chr4.1 | CDS | 9428473 | 9428526 | 9428473 | ID=cds.MS.gene70311.t1;Parent=MS.gene70311.t1 |
| chr4.1 | exon | 9428615 | 9428763 | 9428615 | ID=MS.gene70311.t1.exon6;Parent=MS.gene70311.t1 |
| chr4.1 | CDS | 9428615 | 9428763 | 9428615 | ID=cds.MS.gene70311.t1;Parent=MS.gene70311.t1 |
| chr4.1 | exon | 9428840 | 9429035 | 9428840 | ID=MS.gene70311.t1.exon7;Parent=MS.gene70311.t1 |
| chr4.1 | CDS | 9428840 | 9429035 | 9428840 | ID=cds.MS.gene70311.t1;Parent=MS.gene70311.t1 |
| Gene Sequence |
| Protein sequence |
