AlfalfaGEDB | MS.gene70311

M. sativa cultivar XinJiangDaYe / MS.gene70311

KEGG: K07933
GO: GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF00071.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70311.t1	XP_003630114.1	99.4	342	2	0	1	342	1	342	1.00E-189	672.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70311.t1	Q9C5J9	77.0	348	65	7	2	342	3	342	9.6e-141	501.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70311.t1	G7LBB0	99.4	342	2	0	1	342	1	342	7.2e-190	672.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene05029	MS.gene70311	0.804414	2.19E-49	-1.69E-46
MS.gene050752	MS.gene70311	0.818287	2.12E-52	-1.69E-46
MS.gene050955	MS.gene70311	0.815053	1.13E-51	-1.69E-46
MS.gene051003	MS.gene70311	0.826948	2.05E-54	-1.69E-46
MS.gene051234	MS.gene70311	0.804704	1.90E-49	-1.69E-46
MS.gene054004	MS.gene70311	0.816136	6.46E-52	-1.69E-46
MS.gene054005	MS.gene70311	0.831171	1.94E-55	-1.69E-46
MS.gene054403	MS.gene70311	0.820315	7.32E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene009458	MS.gene70311	PPI
MS.gene51627	MS.gene70311	PPI
MS.gene56256	MS.gene70311	PPI
MS.gene63514	MS.gene70311	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70311.t1	MTR_8g091980	99.415	342	2	0	1	342	1	342	0.0	694
MS.gene70311.t1	MTR_8g091980	99.281	278	2	0	1	278	1	278	0.0	566
MS.gene70311.t1	MTR_8g092020	23.786	206	131	5	22	227	13	192	1.43e-12	66.2
MS.gene70311.t1	MTR_7g103070	28.369	141	76	3	23	162	18	134	2.75e-12	65.9
MS.gene70311.t1	MTR_1g029450	30.675	163	83	6	23	183	19	153	5.01e-12	65.1
MS.gene70311.t1	MTR_8g006970	26.286	175	96	5	17	189	16	159	7.02e-12	64.7
MS.gene70311.t1	MTR_1g062760	29.078	141	74	4	23	162	16	131	9.52e-12	63.9
MS.gene70311.t1	MTR_8g093740	31.902	163	81	7	23	183	15	149	1.63e-11	63.2
MS.gene70311.t1	MTR_8g006970	25.749	167	93	4	23	189	10	145	1.98e-11	62.4
MS.gene70311.t1	MTR_7g081700	25.150	167	94	4	23	189	10	145	8.79e-11	61.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70311.t1	AT5G64813	77.011	348	65	7	2	342	3	342	0.0	513
MS.gene70311.t1	AT5G64813	77.011	348	65	7	2	342	3	342	0.0	513
MS.gene70311.t1	AT5G64813	77.011	348	65	7	2	342	3	342	0.0	513
MS.gene70311.t1	AT5G09910	70.349	344	86	5	2	342	3	333	3.87e-163	459
MS.gene70311.t1	AT5G09910	70.349	344	86	5	2	342	3	333	3.87e-163	459
MS.gene70311.t1	AT5G09910	65.698	344	85	6	2	342	3	316	3.15e-145	413
MS.gene70311.t1	AT5G09910	65.698	344	85	6	2	342	3	316	3.15e-145	413
MS.gene70311.t1	AT5G09910	65.698	344	85	6	2	342	3	316	3.15e-145	413
MS.gene70311.t1	AT1G43890	32.515	163	80	6	23	183	15	149	2.42e-13	68.6
MS.gene70311.t1	AT1G43890	32.515	163	80	6	23	183	15	149	2.42e-13	68.6

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Find 87 sgRNAs with CRISPR-Local

Find 286 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAGCAAGGTATGATA+AGG	0.458953	4.1:+9428478	MS.gene70311:CDS
AACCAGACAAAGAAAATCTA+GGG	0.551575	4.1:-9428960	None:intergenic
AACCCTGCTTCTCGACCCAT+TGG	0.497798	4.1:-9426826	None:intergenic
AACGATAAGGTGAACTAAAG+AGG	0.519763	4.1:-9426205	None:intergenic
ACGCCAATGGGTCGAGAAGC+AGG	0.392805	4.1:+9426823	MS.gene70311:CDS
AGAAGCAAGGTATGATAAGG+AGG	0.588578	4.1:+9428481	MS.gene70311:CDS
AGATCTTTGAGGTGAAGGAA+TGG	0.539829	4.1:-9428664	None:intergenic
AGATTGCGTTGAGCCGGAAG+TGG	0.491900	4.1:-9428877	None:intergenic
AGATTTCTTTGTTGAACTGT+GGG	0.551856	4.1:+9426434	MS.gene70311:CDS
AGCTCTTCAAGTAGCCTCAA+AGG	0.575296	4.1:+9426399	MS.gene70311:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGAAGCAAGGTATGATA+AGG	+	chr4.1:9428478-9428497	MS.gene70311:CDS	30.0%
AAACATTGAAGAAACACAGA+TGG	-	chr4.1:9427950-9427969	None:intergenic	30.0%
AACCAGACAAAGAAAATCTA+GGG	-	chr4.1:9428963-9428982	None:intergenic	30.0%
ACAAATAGTTAAATGCCAAG+TGG	-	chr4.1:9427286-9427305	None:intergenic	30.0%
AGAGTCAGATTAGTAAAAAC+AGG	-	chr4.1:9427254-9427273	None:intergenic	30.0%
AGATTTCTTTGTTGAACTGT+GGG	+	chr4.1:9426434-9426453	MS.gene70311:CDS	30.0%
AGGTAAGCATTTCACATTAT+AGG	+	chr4.1:9426283-9426302	MS.gene70311:intron	30.0%
AGTAAAGCAGATCATTTCTA+TGG	-	chr4.1:9427379-9427398	None:intergenic	30.0%
AGTACAATCAATTAAGCCTA+AGG	-	chr4.1:9425875-9425894	None:intergenic	30.0%
AGTGACACAAAATTTAGTTG+AGG	-	chr4.1:9426924-9426943	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	9424129	9429035	9424129	ID=MS.gene70311
chr4.1	mRNA	9424129	9429035	9424129	ID=MS.gene70311.t1;Parent=MS.gene70311
chr4.1	exon	9424129	9424219	9424129	ID=MS.gene70311.t1.exon1;Parent=MS.gene70311.t1
chr4.1	CDS	9424129	9424219	9424129	ID=cds.MS.gene70311.t1;Parent=MS.gene70311.t1
chr4.1	exon	9426193	9426284	9426193	ID=MS.gene70311.t1.exon2;Parent=MS.gene70311.t1
chr4.1	CDS	9426193	9426284	9426193	ID=cds.MS.gene70311.t1;Parent=MS.gene70311.t1
chr4.1	exon	9426375	9426516	9426375	ID=MS.gene70311.t1.exon3;Parent=MS.gene70311.t1
chr4.1	CDS	9426375	9426516	9426375	ID=cds.MS.gene70311.t1;Parent=MS.gene70311.t1
chr4.1	exon	9426609	9426913	9426609	ID=MS.gene70311.t1.exon4;Parent=MS.gene70311.t1
chr4.1	CDS	9426609	9426913	9426609	ID=cds.MS.gene70311.t1;Parent=MS.gene70311.t1
chr4.1	exon	9428473	9428526	9428473	ID=MS.gene70311.t1.exon5;Parent=MS.gene70311.t1
chr4.1	CDS	9428473	9428526	9428473	ID=cds.MS.gene70311.t1;Parent=MS.gene70311.t1
chr4.1	exon	9428615	9428763	9428615	ID=MS.gene70311.t1.exon6;Parent=MS.gene70311.t1
chr4.1	CDS	9428615	9428763	9428615	ID=cds.MS.gene70311.t1;Parent=MS.gene70311.t1
chr4.1	exon	9428840	9429035	9428840	ID=MS.gene70311.t1.exon7;Parent=MS.gene70311.t1
chr4.1	CDS	9428840	9429035	9428840	ID=cds.MS.gene70311.t1;Parent=MS.gene70311.t1

Gene Sequence

>MS.gene70311

ATGTTCTGGAGGGAACGTGAGAGGGAGAATAAGGAACATAACGGTGGAGTGCTTTGTGGACAAGTCAGAGTGCTCGTTGTTGGTGACTCAGGTTCTTCATTCTTACGCTCTTTTTTATTTTGTTTTCCCTCTCAACGAGTGTGTTTGGTTATGCTGCGACGAAAATTGATTTTGATAGAATTGATTCCGGCTAAAAGTAAGTTGAAGAATAGATTCAAGACTTGAGTGAATCATAGGTTTAAGTTAGAATTAACTCTGGAGGCGAAATCAATTTTATTCGAGAACATTCAAACATGCAAAAAATTTATAATCAATTTTGTCTCCTGCAGTAGTGGAACTAAGCATATGTTCAATTTTCCGAATTTGATATATTTATAATTTTTGGAAGAAAAAATTATTTTTAAATTGAATTTGTTTTTGAAGTGTGCAAGTTATGGTAAGTTCACAATTAGTCTAATTTAATCTCAAATATATGATGAATTTAACTCAGCTGGTGGTTACATTACAAGTATAACCTTATTTATGTACCTTAGAAACCAGCTTACCTTAGAAGAGCTTTGTGCTTTAACTTTACTGTGATTTTTTAGCGGGGATGGAAAATTTCCCCGCGTCGTGTGGAAAAAGTCAAGTTGATTGAGTGAAGGAGGTTGGATTTGGAATTTAGAAATCCATTGGGATTTTGTACTAGTGCCACTGAAACTCGTAGATCGGGACGGAGAAAATAGTCATCGTGATGTAACTGTTATAATATTTGATTGAGGCTTTAAGAGTTATTATGTTGCTAAAATTAGCCGTAATATATGGTGTCATGCCGAGTGTGTAGAGTACATTTATGTAGTCTGCTTTAGAACTTAGAAGTAGGAAGATGGTGGAAATTTCTGAAAAACGTTATGTGCTTTGACAAATGTCAATTTCTTTGGACGTACTTTCGAGATCTATGCTGGAAGCATTATTGTTATTCAAAATTAGTTCAATCAATCAAATATTACAGGAAAGTAGGTTAACTTTGTATATGGGTGTTTGACTCTAGGAAGTTTAAATTTATCGAGACTGTAATGCAAACGACTATATGGTTTTATGTGAACATCAAATCCTGTGATAAAATTTAATATTATTTGATTTTGAATTGGTTAAAGTTCAGGAGCTGAGCGAAGCTAGTGTGGCGTGAGAATAACAACATTTGACATAAATGATGAGTACGAGCTACCTCGCTTTTATAGCTGTGTGTGTTGACTCTTACGTAAAAACTATTTTTATAAATTAACTTTGGGGAAAAATATCAAAATCTAATGTTACTAGGGATATAAATAGTTGTTGCATATAATCCATTTATAAAGTAGGCTTAAGTTCCCACAGATTTGTCATAGAGGAATATGCATTTGAAAAACTCTCAGATATGGTGTTTCTCTGAAGCTTCTGAATTAAACTATGCTTTGAATTTATTGTTATTGTTGCGTCAAGTGCATTAAAATAGCTCTTTAGTGCCTGCTTGATTTGACGAAATACTTTCTGCTTTACCGTTTCTATTTCTTAATTTGCTAACAATCACAAAAATGTATATTTTCTTTTCACCCTTTTCCTGATTCACGTCATAAAAAAATGATGTTTCTACCATTAATTATATAATAAATACCGGAAAACAGAAAGTCAGATGGAAATAAGATGACACTTCATAATTATTGAAAACAGAAAATATAAATACGAATCATTTTTCTTAGACCAAACTGCCCTCAAGTTGTCTATCCTTAGGCTTAATTGATTGTACTTCCCAAGTCCAAACTTATGCCCTTCGATGTGCATCAGTCAACTGTAGGTAAACGATGAATAGTGTGTTTGGAATTGCGGTCAAATTGCTTCAGACGCGCATCCAACCACAAGCTACAAATAGTAGCTTCACTATTTTCATGTCAAAAAAGCTACGTGAATCCAAACATTAGTGAAGAAAATAATTTTATTTTCCGAGCATGTGACTGCTTGCCCTCCCCCCTACTTTATGATTCTCTCTATTACCATTTTTCAGAGACATCTTAATTGCAGATATATGATATTTTCTCATTCTTGCAGGTGTTGGGAAGTCCTCTTTAGTTCACCTTATCGTTAAAGGTTCTCCCATTGCTCGTCCTTCCCAGACAATTGGTTGTACAGTAGATGTGAAGGTAAGCATTTCACATTATAGGGTTACACAAGAGAATACATTGTTTCTGTAATTCAAAGTCTTTACTGAACATCCTCCGTTTCATTTCCAGCACACTACTTATGGAAATTCTGGCAGCTCTTCAAGTAGCCTCAAAGGTGATTCTGAGAGAGATTTCTTTGTTGAACTGTGGGATGTATCAGGACATGAACGTTATAAAGATTGCCGATCTCTCTTTTATTCACTGATTAATGGTGAGCAACAATGTTCCTATTGTTTCAGTTTTATAAAATGTATACATGTTTAGATTTGAAGGAAGTGGTTATTGTTTGAACTTCATTTGCAGGTGTAATTTTTGTTCACGATCTTTCACAGAGAAGAACGAAGACGAGTTTGCAGAAGTGGGCAGCTGAGATTGCTGCAACTGGGACATTTTCAGCTCCTTTGGGATCTGGCGGCCCTGGTGGTCTTCCTGTTCCATATATTGTTATTGGTAACAAAGCTGATATTGTTGCAAAAGAGGGTGCGAGAGGAAGCAGCGGGAATCTTGTTGATGTTGCACGCCAATGGGTCGAGAAGCAGGGTTTGCTTCCATCCAGCGAGGAGCTTCCACTGACTGAGAGTTTTCCTGGTGGTGGAGGCCTTATTGCAGTAAGCGCCTCAACTAAATTTTGTGTCACTTTTACAAGTTTGAGATGCCACTTTCTATGCTTTAGATGATATATGCTACCTCCATGAATAATTCCGATGTTAATGCTAATTTCTAAGGAGTTTCAAGTATTAACAAGTATAGTGGCAGTTCAGAATTTTAGTTGTGTTTGTTCTGTACTTTAAAGCTGGCTGGAATTTTACAAATACATATTAAACGAGTTTTACAATTTTTTTTTTACCCTATCACTGTATCTGAAATGGTACCTTAGAGTTTAGTTGATGGATGAAGAGGAATTTTATGCAATGCCCATTAAAACAAAGCTATTCCATGTTGCCTCCTGTTTTTACTAATCTGACTCTCTACTATATCCACTTGGCATTTAACTATTTGTATCCATAAAATATCAGATGAAATAGAGCTATTTTAGAAGGGATATAATGAAATCTTTTGATCAGTTGTTCCCATAGAAATGATCTGCTTTACTTGACTGATGAGGACAACGAATAGTACATTAACAAAAAAAATCTAAATAGAAATAGGAAAAAAAAAATCTAAACAGAAGTAAATATTGATAGTTTCTCTCTATACTCTATTGAGATAAAATTCTATAGAGAATATGGAATAGGTTACTCTGTCAGGTCCTATGTAGAAGACCCTTAGGCACTTCTCTCATATGTTAAGAAAATGAGTAATGATATTTTGACATCTATCAAATAGATAACTTTGTTGACAACCTTGTTGTGTAATGAATGTATATACTGTGTGTGTCTATTACTAAATTACCCTTTGAGTATAGACACATTTGATTTTGACTTTTCAGTCCAAGACAAATTGGTAGTATTAATAAGGGGAAATATTTGGAAAAAGAACAATACATGTATCTTAAGGGGTCTTATAAATAGGGACGGATGAAGTATAGAATAAAATAAAATAGAAAAAAGACAATGATGATAAATAAATAGTGTTCTCATTCAAAATACCATGTGATCGAATAAACAGTGTTCCAATTTTTAAAAGTCCTGTGATTTTCAACCATCTGTGTTTCTTCAATGTTTGAATATTATGAAATACTTGCATTGAAACTTCACACTTCACTTTGTTGCCAACTATCTAGATTAGAAGTAGAAGTCCCTTAAAAAAAACTAGATTAGAAGTTGATTTTTTTTATCGGTAATTTATTTTCAAAATCAAAAGGCTAATGGTTAAAATTGTATTTCTAACAGTAGTTTCTTGAAGCATGTCAAATCATATTTTCTTTATAGCCACTCATTATGGATAATGAATTTAGCTCAATCACTACATTGCACACTGTGATGTATTCAGAACAGTTTTAAATTTTGAACTTAAGATGTTATACTATCGGAGAATCTCGATTTCTCATTTAGTCATTTAAAACCTAAAGTATCAGTTGTGCTTATGAAGTAACAAGTCATATCTGATAGAATTTGATGCATAAATCTGCCTCGTATTTATTTATTTATTTATTTATTCATTTAATAGTTGCTATCCAGTCCATTCTTCTTATAGTAGTTTTAATTTTTTTGTCGGATGACTACAGGCAGCAAAAGAAGCAAGGTATGATAAGGAGGCTGTGATTAAGTTTTTCCGCATGGTCAGTAATGTCTTTGATAACTTTATCCTTTATTTTTTGTTTAAATTTATGGGTTGTCATCTAAATTTTCTTGTACCTCTCCTTTTAGTTGATTAGGAGAAGATATTTCTCAGATGAAATACCTGCACCTACATGGTCCATTCCTTCACCTCAAAGATCTTCTCAGCGAATAGATGAAATATCTTCTCAGCGGATAGATGAAAGTTTTATTGATGATGATCAGTCTTATAATACAGGGTATTTTCTGCTTCTTGTCTAAATCATTTTCATGTTTTGTGCAACTCCTTACAAAATTTATTGTTGTTGATTGCAGTCGAAGCAGTGATCCGTACAAGTATAACATGCTTCCCCCACTTCCGGCTCAACGCAATCTAACTCCACCACCCACACTCTATCCTCAACAACCAGTTTCGGTCTCTGAAAGCTACAGTTACCCTAGATTTTCTTTGTCTGGTTCGTCAGAAATGAGTGCTTCATCGAGAACAAAGCGCTCAGATATTAATGTTTGA

Protein sequence

>MS.gene70311.t1

MFWRERERENKEHNGGVLCGQVRVLVVGDSGVGKSSLVHLIVKGSPIARPSQTIGCTVDVKHTTYGNSGSSSSSLKGDSERDFFVELWDVSGHERYKDCRSLFYSLINGVIFVHDLSQRRTKTSLQKWAAEIAATGTFSAPLGSGGPGGLPVPYIVIGNKADIVAKEGARGSSGNLVDVARQWVEKQGLLPSSEELPLTESFPGGGGLIAAAKEARYDKEAVIKFFRMLIRRRYFSDEIPAPTWSIPSPQRSSQRIDEISSQRIDESFIDDDQSYNTGRSSDPYKYNMLPPLPAQRNLTPPPTLYPQQPVSVSESYSYPRFSLSGSSEMSASSRTKRSDINV