Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71026.t1 | XP_003626313.1 | 91.6 | 275 | 21 | 2 | 1 | 274 | 1 | 274 | 1.10E-135 | 492.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71026.t1 | Q86JM5 | 32.7 | 245 | 160 | 3 | 20 | 262 | 37 | 278 | 7.0e-25 | 115.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71026.t1 | Q2HTN1 | 91.6 | 275 | 21 | 2 | 1 | 274 | 1 | 274 | 8.2e-136 | 492.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049427 | MS.gene71026 | 0.809591 | 1.75E-50 | -1.69E-46 |
| MS.gene049609 | MS.gene71026 | 0.810572 | 1.08E-50 | -1.69E-46 |
| MS.gene050538 | MS.gene71026 | 0.826028 | 3.40E-54 | -1.69E-46 |
| MS.gene050593 | MS.gene71026 | 0.811905 | 5.54E-51 | -1.69E-46 |
| MS.gene050950 | MS.gene71026 | 0.80912 | 2.21E-50 | -1.69E-46 |
| MS.gene05105 | MS.gene71026 | 0.800245 | 1.58E-48 | -1.69E-46 |
| MS.gene052505 | MS.gene71026 | 0.806798 | 6.91E-50 | -1.69E-46 |
| MS.gene053207 | MS.gene71026 | 0.803477 | 3.42E-49 | -1.69E-46 |
| MS.gene053213 | MS.gene71026 | 0.833371 | 5.54E-56 | -1.69E-46 |
| MS.gene053286 | MS.gene71026 | 0.828835 | 7.21E-55 | -1.69E-46 |
| MS.gene053436 | MS.gene71026 | 0.806575 | 7.70E-50 | -1.69E-46 |
| MS.gene053574 | MS.gene71026 | 0.836994 | 6.75E-57 | -1.69E-46 |
| MS.gene054927 | MS.gene71026 | 0.820145 | 8.01E-53 | -1.69E-46 |
| MS.gene058019 | MS.gene71026 | 0.824317 | 8.62E-54 | -1.69E-46 |
| MS.gene05883 | MS.gene71026 | 0.831393 | 1.71E-55 | -1.69E-46 |
| MS.gene05934 | MS.gene71026 | 0.805356 | 1.39E-49 | -1.69E-46 |
| MS.gene059536 | MS.gene71026 | 0.802018 | 6.84E-49 | -1.69E-46 |
| MS.gene060804 | MS.gene71026 | 0.815521 | 8.86E-52 | -1.69E-46 |
| MS.gene060835 | MS.gene71026 | 0.829853 | 4.08E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71026.t1 | MTR_7g113780 | 95.273 | 275 | 11 | 2 | 1 | 274 | 1 | 274 | 1.02e-164 | 457 |
| MS.gene71026.t1 | MTR_8g078200 | 33.808 | 281 | 168 | 4 | 9 | 274 | 16 | 293 | 1.26e-41 | 145 |
| MS.gene71026.t1 | MTR_3g111610 | 33.566 | 286 | 160 | 7 | 9 | 274 | 15 | 290 | 2.51e-40 | 142 |
| MS.gene71026.t1 | MTR_5g019330 | 33.670 | 297 | 159 | 8 | 1 | 273 | 1 | 283 | 2.09e-39 | 139 |
| MS.gene71026.t1 | MTR_1g021915 | 32.178 | 202 | 116 | 5 | 9 | 193 | 9 | 206 | 3.28e-22 | 92.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71026.t1 | AT3G06470 | 56.934 | 274 | 106 | 4 | 9 | 273 | 8 | 278 | 1.64e-100 | 295 |
| MS.gene71026.t1 | AT3G06460 | 52.290 | 262 | 115 | 5 | 9 | 263 | 8 | 266 | 4.78e-86 | 259 |
| MS.gene71026.t1 | AT1G75000 | 30.690 | 290 | 152 | 6 | 10 | 267 | 5 | 277 | 6.61e-38 | 135 |
| MS.gene71026.t1 | AT4G36830 | 29.900 | 301 | 156 | 11 | 9 | 274 | 9 | 289 | 4.46e-32 | 120 |
| MS.gene71026.t1 | AT4G36830 | 31.111 | 270 | 133 | 10 | 9 | 245 | 9 | 258 | 8.57e-27 | 106 |
Find 103 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATGGTCCCCTCTTCTTT+TGG | 0.138488 | 1.4:-29710719 | MS.gene71026:CDS |
| CTCCATCCTCTCCCTCATTA+TGG | 0.310997 | 1.4:-29710820 | MS.gene71026:CDS |
| GAGAGTGAGGGAGAGATAAA+AGG | 0.313559 | 1.4:+29710917 | None:intergenic |
| AGTACTGGTGGTGGATGCTC+TGG | 0.317198 | 1.4:-29710363 | MS.gene71026:CDS |
| CATGTGAAATTTAGAATGTT+TGG | 0.317423 | 1.4:+29710993 | None:intergenic |
| CTCTCCCTCATTATGGCTAT+TGG | 0.337974 | 1.4:-29710813 | MS.gene71026:CDS |
| TGAGGTGGGATGGGTGGGAG+AGG | 0.346076 | 1.4:+29710882 | None:intergenic |
| GGATGGGTGGGAGAGGGAAG+AGG | 0.354642 | 1.4:+29710889 | None:intergenic |
| GTGGGTTAGGATGGTGAGGG+AGG | 0.363724 | 1.4:+29710788 | None:intergenic |
| TGAACGTCACGAGTCTTTAT+CGG | 0.368171 | 1.4:+29710233 | None:intergenic |
| CAGATGGTGGAGCGGAGGTT+GGG | 0.377434 | 1.4:+29710762 | None:intergenic |
| ATGGGTGGGAGAGGGAAGAG+GGG | 0.383793 | 1.4:+29710891 | None:intergenic |
| GGATGGAGAGGATGAGGTTG+TGG | 0.388690 | 1.4:+29710835 | None:intergenic |
| TTGAGGAAGTGAGGTGGGAT+GGG | 0.392543 | 1.4:+29710873 | None:intergenic |
| GGAAGAGGGGAAGGAGAGTG+AGG | 0.392647 | 1.4:+29710904 | None:intergenic |
| TCCCTATCATGTGTTATCTA+TGG | 0.395738 | 1.4:-29710584 | MS.gene71026:CDS |
| GAGTTGGTAAGAAGTGCAAT+AGG | 0.397860 | 1.4:+29710537 | None:intergenic |
| AGGAAAGAAAGGGATGAGGC+TGG | 0.403020 | 1.4:+29710954 | None:intergenic |
| GTGGGAGAGGGAAGAGGGGA+AGG | 0.405493 | 1.4:+29710895 | None:intergenic |
| CAAAAGAAGAGGGGACCATT+TGG | 0.405921 | 1.4:+29710720 | None:intergenic |
| AGATGGTGGAGCGGAGGTTG+GGG | 0.415422 | 1.4:+29710763 | None:intergenic |
| GAGGAATGAGAGACGTTTGA+TGG | 0.423143 | 1.4:+29710629 | None:intergenic |
| GGGTGTGGGTTAGGATGGTG+AGG | 0.424795 | 1.4:+29710784 | None:intergenic |
| GAGGTTGTGGAGTGCGGTGA+AGG | 0.426675 | 1.4:+29710848 | None:intergenic |
| TGGAAAGAGAGAGGAAAGAA+AGG | 0.434953 | 1.4:+29710943 | None:intergenic |
| TTTGAGGAAGTGAGGTGGGA+TGG | 0.438957 | 1.4:+29710872 | None:intergenic |
| AGCCATAGATAACACATGAT+AGG | 0.441743 | 1.4:+29710582 | None:intergenic |
| GCAGATGGTGGAGCGGAGGT+TGG | 0.442514 | 1.4:+29710761 | None:intergenic |
| GGGAGAGGATGGAGAGGATG+AGG | 0.450488 | 1.4:+29710829 | None:intergenic |
| TTGGCAGAATCCTTCAACAT+TGG | 0.451434 | 1.4:-29711028 | MS.gene71026:CDS |
| GTGTTCAGCTTCGCCGTCTC+CGG | 0.454468 | 1.4:-29710414 | MS.gene71026:CDS |
| AGGGATGAGGCTGGAGTGTG+AGG | 0.456623 | 1.4:+29710963 | None:intergenic |
| AGAGCATCCACCACCAGTAC+TGG | 0.464465 | 1.4:+29710365 | None:intergenic |
| GAAGAGGGGAAGGAGAGTGA+GGG | 0.473348 | 1.4:+29710905 | None:intergenic |
| TACTACTTCCTCACCACTGT+TGG | 0.476064 | 1.4:-29710489 | MS.gene71026:CDS |
| AGGAAGTGAGGTGGGATGGG+TGG | 0.477567 | 1.4:+29710876 | None:intergenic |
| TGAACACGAATTGAACAATC+TGG | 0.478972 | 1.4:+29710430 | None:intergenic |
| CTCATGCTTTATTATCACTT+CGG | 0.480515 | 1.4:-29710390 | MS.gene71026:CDS |
| GATGGGTGGGAGAGGGAAGA+GGG | 0.481622 | 1.4:+29710890 | None:intergenic |
| GATGCTCTGGGATGAAAGCT+TGG | 0.486306 | 1.4:-29710350 | MS.gene71026:CDS |
| AGTTGGTAAGAAGTGCAATA+GGG | 0.487218 | 1.4:+29710538 | None:intergenic |
| GAGGTGGGATGGGTGGGAGA+GGG | 0.487875 | 1.4:+29710883 | None:intergenic |
| CCTCTTCATACCCTTCCAAA+TGG | 0.500179 | 1.4:-29710735 | MS.gene71026:CDS |
| TATCACTTCGGATCCAGTAC+TGG | 0.500674 | 1.4:-29710378 | MS.gene71026:CDS |
| GATGAGGCTGGAGTGTGAGG+AGG | 0.502414 | 1.4:+29710966 | None:intergenic |
| GAGGGAGAGATAAAAGGCTA+TGG | 0.508066 | 1.4:+29710923 | None:intergenic |
| GGAAAGAGAGAGGAAAGAAA+GGG | 0.514238 | 1.4:+29710944 | None:intergenic |
| GGAAGTGAGGTGGGATGGGT+GGG | 0.514653 | 1.4:+29710877 | None:intergenic |
| AGAGAGGAAAGAAAGGGATG+AGG | 0.524383 | 1.4:+29710950 | None:intergenic |
| GCCATAGATAACACATGATA+GGG | 0.526666 | 1.4:+29710583 | None:intergenic |
| AGCCATAATGAGGGAGAGGA+TGG | 0.527649 | 1.4:+29710818 | None:intergenic |
| GATGGTGGAGCGGAGGTTGG+GGG | 0.528775 | 1.4:+29710764 | None:intergenic |
| TGTTGAAGGATTCTGCCAAT+GGG | 0.532924 | 1.4:+29711032 | None:intergenic |
| TGATAGGGACGGTGGAATGA+TGG | 0.533402 | 1.4:+29710598 | None:intergenic |
| TCGGTAACGACGCGTTTCCA+CGG | 0.536456 | 1.4:+29710456 | None:intergenic |
| GTACTGGTGGTGGATGCTCT+GGG | 0.537624 | 1.4:-29710362 | MS.gene71026:CDS |
| AGGGTTTGAGGAAGTGAGGT+GGG | 0.541375 | 1.4:+29710868 | None:intergenic |
| TTCGGATCCAGTACTGGTGG+TGG | 0.542647 | 1.4:-29710372 | MS.gene71026:CDS |
| GGAAGCAGATGGTGGAGCGG+AGG | 0.545303 | 1.4:+29710757 | None:intergenic |
| ATGTTGAAGGATTCTGCCAA+TGG | 0.545351 | 1.4:+29711031 | None:intergenic |
| GGTAGACTAGCCAATGTTGA+AGG | 0.550736 | 1.4:+29711018 | None:intergenic |
| ATGAGGCTGGAGTGTGAGGA+GGG | 0.554548 | 1.4:+29710967 | None:intergenic |
| GGAGTGCGGTGAAGGGTTTG+AGG | 0.557377 | 1.4:+29710856 | None:intergenic |
| AAAAGGCTATGGAAAGAGAG+AGG | 0.557470 | 1.4:+29710934 | None:intergenic |
| GTGATAATAAAGCATGAGAC+CGG | 0.563667 | 1.4:+29710395 | None:intergenic |
| CAATAGCCATAATGAGGGAG+AGG | 0.566959 | 1.4:+29710814 | None:intergenic |
| AGGTGCCAATAGCCATAATG+AGG | 0.568133 | 1.4:+29710808 | None:intergenic |
| GTGAAGGGTTTGAGGAAGTG+AGG | 0.573391 | 1.4:+29710864 | None:intergenic |
| AGGTTGTGGAGTGCGGTGAA+GGG | 0.575003 | 1.4:+29710849 | None:intergenic |
| GACGTTTGATGGATCTCGAA+AGG | 0.575815 | 1.4:+29710640 | None:intergenic |
| CAAACATTCTAAATTTCACA+TGG | 0.578086 | 1.4:-29710992 | MS.gene71026:CDS |
| GGTGTGGGTTAGGATGGTGA+GGG | 0.579431 | 1.4:+29710785 | None:intergenic |
| AAGGGTTTGAGGAAGTGAGG+TGG | 0.580580 | 1.4:+29710867 | None:intergenic |
| GAGGGAAGCAGATGGTGGAG+CGG | 0.587376 | 1.4:+29710754 | None:intergenic |
| CGACGCGTTTCCACGGCGGT+CGG | 0.590079 | 1.4:+29710463 | None:intergenic |
| GAGGATGAGGTTGTGGAGTG+CGG | 0.590535 | 1.4:+29710842 | None:intergenic |
| GATGTAGGCCCAAAAGAAGA+GGG | 0.592168 | 1.4:+29710710 | None:intergenic |
| AGAAGAGGGGACCATTTGGA+AGG | 0.593595 | 1.4:+29710724 | None:intergenic |
| AGATGTAGGCCCAAAAGAAG+AGG | 0.599553 | 1.4:+29710709 | None:intergenic |
| ATAAAGCATGAGACCGGAGA+CGG | 0.617252 | 1.4:+29710401 | None:intergenic |
| TGAAATTTAGAATGTTTGGA+TGG | 0.618798 | 1.4:+29710997 | None:intergenic |
| CACTTCGGATCCAGTACTGG+TGG | 0.625047 | 1.4:-29710375 | MS.gene71026:CDS |
| GTCGGATTCCAACAGTGGTG+AGG | 0.628146 | 1.4:+29710481 | None:intergenic |
| CGGTGGAATGATGGTACACG+TGG | 0.631074 | 1.4:+29710607 | None:intergenic |
| ATGAAGAGGGAAGCAGATGG+TGG | 0.631390 | 1.4:+29710749 | None:intergenic |
| CATTTGGAAGGGTATGAAGA+GGG | 0.640646 | 1.4:+29710736 | None:intergenic |
| CGGCGGTCGGATTCCAACAG+TGG | 0.641832 | 1.4:+29710476 | None:intergenic |
| TAATGAGGGAGAGGATGGAG+AGG | 0.644404 | 1.4:+29710823 | None:intergenic |
| GATGACGTGGACGGATGAGT+TGG | 0.645959 | 1.4:+29710521 | None:intergenic |
| GGTATGAAGAGGGAAGCAGA+TGG | 0.649043 | 1.4:+29710746 | None:intergenic |
| AGGTGAATGGAAAATCCCAT+TGG | 0.650362 | 1.4:-29711047 | None:intergenic |
| AGAGTACATGATGACGTGGA+CGG | 0.658163 | 1.4:+29710512 | None:intergenic |
| GAATTGAACAATCTGGCAGT+CGG | 0.662923 | 1.4:+29710437 | None:intergenic |
| GAAGAGGGGACCATTTGGAA+GGG | 0.666129 | 1.4:+29710725 | None:intergenic |
| TGGAATGATGGTACACGTGG+AGG | 0.666407 | 1.4:+29710610 | None:intergenic |
| CCATTTGGAAGGGTATGAAG+AGG | 0.667748 | 1.4:+29710735 | None:intergenic |
| TAGATAACACATGATAGGGA+CGG | 0.677431 | 1.4:+29710587 | None:intergenic |
| GGTGCCAATAGCCATAATGA+GGG | 0.679843 | 1.4:+29710809 | None:intergenic |
| ATAACACATGATAGGGACGG+TGG | 0.698770 | 1.4:+29710590 | None:intergenic |
| AGTAAGAGTACATGATGACG+TGG | 0.708386 | 1.4:+29710508 | None:intergenic |
| ATGTAGGCCCAAAAGAAGAG+GGG | 0.717878 | 1.4:+29710711 | None:intergenic |
| CTGTTGGAATCCGACCGCCG+TGG | 0.731632 | 1.4:-29710473 | MS.gene71026:CDS |
| GTAACGACGCGTTTCCACGG+CGG | 0.765126 | 1.4:+29710459 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | CAAACATTCTAAATTTCACA+TGG | - | chr1.4:29710288-29710307 | MS.gene71026:CDS | 25.0% |
| !! | CATGTGAAATTTAGAATGTT+TGG | + | chr1.4:29710290-29710309 | None:intergenic | 25.0% |
| !! | TGAAATTTAGAATGTTTGGA+TGG | + | chr1.4:29710286-29710305 | None:intergenic | 25.0% |
| !!! | TGAATTCAAGATATTTTGAG+AGG | + | chr1.4:29710601-29710620 | None:intergenic | 25.0% |
| !!! | TGTTTTTAATGCTTCTCTTT+TGG | - | chr1.4:29710964-29710983 | MS.gene71026:CDS | 25.0% |
| ! | CTCATGCTTTATTATCACTT+CGG | - | chr1.4:29710890-29710909 | MS.gene71026:CDS | 30.0% |
| AGCCATAGATAACACATGAT+AGG | + | chr1.4:29710701-29710720 | None:intergenic | 35.0% | |
| GCCATAGATAACACATGATA+GGG | + | chr1.4:29710700-29710719 | None:intergenic | 35.0% | |
| GTGATAATAAAGCATGAGAC+CGG | + | chr1.4:29710888-29710907 | None:intergenic | 35.0% | |
| TAGATAACACATGATAGGGA+CGG | + | chr1.4:29710696-29710715 | None:intergenic | 35.0% | |
| TCCCTATCATGTGTTATCTA+TGG | - | chr1.4:29710696-29710715 | MS.gene71026:CDS | 35.0% | |
| TGAACACGAATTGAACAATC+TGG | + | chr1.4:29710853-29710872 | None:intergenic | 35.0% | |
| !! | AGTTGGTAAGAAGTGCAATA+GGG | + | chr1.4:29710745-29710764 | None:intergenic | 35.0% |
| !! | TTTTGAGAGGTAGAAGATGT+AGG | + | chr1.4:29710588-29710607 | None:intergenic | 35.0% |
| AAAAGGCTATGGAAAGAGAG+AGG | + | chr1.4:29710349-29710368 | None:intergenic | 40.0% | |
| ATGTTGAAGGATTCTGCCAA+TGG | + | chr1.4:29710252-29710271 | None:intergenic | 40.0% | |
| GAATTGAACAATCTGGCAGT+CGG | + | chr1.4:29710846-29710865 | None:intergenic | 40.0% | |
| GGAAAGAGAGAGGAAAGAAA+GGG | + | chr1.4:29710339-29710358 | None:intergenic | 40.0% | |
| TGGAAAGAGAGAGGAAAGAA+AGG | + | chr1.4:29710340-29710359 | None:intergenic | 40.0% | |
| TGTTGAAGGATTCTGCCAAT+GGG | + | chr1.4:29710251-29710270 | None:intergenic | 40.0% | |
| TTGGCAGAATCCTTCAACAT+TGG | - | chr1.4:29710252-29710271 | MS.gene71026:CDS | 40.0% | |
| ! | AAATGGTCCCCTCTTCTTTT+GGG | - | chr1.4:29710562-29710581 | MS.gene71026:CDS | 40.0% |
| ! | AGTAAGAGTACATGATGACG+TGG | + | chr1.4:29710775-29710794 | None:intergenic | 40.0% |
| ! | CATTTGGAAGGGTATGAAGA+GGG | + | chr1.4:29710547-29710566 | None:intergenic | 40.0% |
| !! | GAGTTGGTAAGAAGTGCAAT+AGG | + | chr1.4:29710746-29710765 | None:intergenic | 40.0% |
| AGAGAGGAAAGAAAGGGATG+AGG | + | chr1.4:29710333-29710352 | None:intergenic | 45.0% | |
| AGATGTAGGCCCAAAAGAAG+AGG | + | chr1.4:29710574-29710593 | None:intergenic | 45.0% | |
| AGGTGCCAATAGCCATAATG+AGG | + | chr1.4:29710475-29710494 | None:intergenic | 45.0% | |
| ATAAAGCATGAGACCGGAGA+CGG | + | chr1.4:29710882-29710901 | None:intergenic | 45.0% | |
| ATAACACATGATAGGGACGG+TGG | + | chr1.4:29710693-29710712 | None:intergenic | 45.0% | |
| ATGTAGGCCCAAAAGAAGAG+GGG | + | chr1.4:29710572-29710591 | None:intergenic | 45.0% | |
| CAAAAGAAGAGGGGACCATT+TGG | + | chr1.4:29710563-29710582 | None:intergenic | 45.0% | |
| CAATAGCCATAATGAGGGAG+AGG | + | chr1.4:29710469-29710488 | None:intergenic | 45.0% | |
| CCTCTTCATACCCTTCCAAA+TGG | - | chr1.4:29710545-29710564 | MS.gene71026:CDS | 45.0% | |
| CTCTCCCTCATTATGGCTAT+TGG | - | chr1.4:29710467-29710486 | MS.gene71026:CDS | 45.0% | |
| GAGAGTGAGGGAGAGATAAA+AGG | + | chr1.4:29710366-29710385 | None:intergenic | 45.0% | |
| GAGGAATGAGAGACGTTTGA+TGG | + | chr1.4:29710654-29710673 | None:intergenic | 45.0% | |
| GAGGGAGAGATAAAAGGCTA+TGG | + | chr1.4:29710360-29710379 | None:intergenic | 45.0% | |
| GATGTAGGCCCAAAAGAAGA+GGG | + | chr1.4:29710573-29710592 | None:intergenic | 45.0% | |
| GGTGCCAATAGCCATAATGA+GGG | + | chr1.4:29710474-29710493 | None:intergenic | 45.0% | |
| TACTACTTCCTCACCACTGT+TGG | - | chr1.4:29710791-29710810 | MS.gene71026:CDS | 45.0% | |
| TATCACTTCGGATCCAGTAC+TGG | - | chr1.4:29710902-29710921 | MS.gene71026:CDS | 45.0% | |
| ! | AGAGTACATGATGACGTGGA+CGG | + | chr1.4:29710771-29710790 | None:intergenic | 45.0% |
| ! | CAAATGGTCCCCTCTTCTTT+TGG | - | chr1.4:29710561-29710580 | MS.gene71026:CDS | 45.0% |
| ! | CCATTTGGAAGGGTATGAAG+AGG | + | chr1.4:29710548-29710567 | None:intergenic | 45.0% |
| ! | GACGTTTGATGGATCTCGAA+AGG | + | chr1.4:29710643-29710662 | None:intergenic | 45.0% |
| ! | GGTAGACTAGCCAATGTTGA+AGG | + | chr1.4:29710265-29710284 | None:intergenic | 45.0% |
| AAGGGTTTGAGGAAGTGAGG+TGG | + | chr1.4:29710416-29710435 | None:intergenic | 50.0% | |
| AGAAGAGGGGACCATTTGGA+AGG | + | chr1.4:29710559-29710578 | None:intergenic | 50.0% | |
| AGCCATAATGAGGGAGAGGA+TGG | + | chr1.4:29710465-29710484 | None:intergenic | 50.0% | |
| AGGAAAGAAAGGGATGAGGC+TGG | + | chr1.4:29710329-29710348 | None:intergenic | 50.0% | |
| AGGGTTTGAGGAAGTGAGGT+GGG | + | chr1.4:29710415-29710434 | None:intergenic | 50.0% | |
| ATGAAGAGGGAAGCAGATGG+TGG | + | chr1.4:29710534-29710553 | None:intergenic | 50.0% | |
| CTCCATCCTCTCCCTCATTA+TGG | - | chr1.4:29710460-29710479 | MS.gene71026:CDS | 50.0% | |
| GAAGAGGGGACCATTTGGAA+GGG | + | chr1.4:29710558-29710577 | None:intergenic | 50.0% | |
| GGTATGAAGAGGGAAGCAGA+TGG | + | chr1.4:29710537-29710556 | None:intergenic | 50.0% | |
| GTGAAGGGTTTGAGGAAGTG+AGG | + | chr1.4:29710419-29710438 | None:intergenic | 50.0% | |
| TAATGAGGGAGAGGATGGAG+AGG | + | chr1.4:29710460-29710479 | None:intergenic | 50.0% | |
| TGATAGGGACGGTGGAATGA+TGG | + | chr1.4:29710685-29710704 | None:intergenic | 50.0% | |
| TGGAATGATGGTACACGTGG+AGG | + | chr1.4:29710673-29710692 | None:intergenic | 50.0% | |
| TTGAGGAAGTGAGGTGGGAT+GGG | + | chr1.4:29710410-29710429 | None:intergenic | 50.0% | |
| TTTGAGGAAGTGAGGTGGGA+TGG | + | chr1.4:29710411-29710430 | None:intergenic | 50.0% | |
| !! | GATGCTCTGGGATGAAAGCT+TGG | - | chr1.4:29710930-29710949 | MS.gene71026:CDS | 50.0% |
| AGGTTGTGGAGTGCGGTGAA+GGG | + | chr1.4:29710434-29710453 | None:intergenic | 55.0% | |
| ATGAGGCTGGAGTGTGAGGA+GGG | + | chr1.4:29710316-29710335 | None:intergenic | 55.0% | |
| CGGTGGAATGATGGTACACG+TGG | + | chr1.4:29710676-29710695 | None:intergenic | 55.0% | |
| GAAGAGGGGAAGGAGAGTGA+GGG | + | chr1.4:29710378-29710397 | None:intergenic | 55.0% | |
| GAGGATGAGGTTGTGGAGTG+CGG | + | chr1.4:29710441-29710460 | None:intergenic | 55.0% | |
| GATGACGTGGACGGATGAGT+TGG | + | chr1.4:29710762-29710781 | None:intergenic | 55.0% | |
| GGATGGAGAGGATGAGGTTG+TGG | + | chr1.4:29710448-29710467 | None:intergenic | 55.0% | |
| GTCGGATTCCAACAGTGGTG+AGG | + | chr1.4:29710802-29710821 | None:intergenic | 55.0% | |
| TCGGTAACGACGCGTTTCCA+CGG | + | chr1.4:29710827-29710846 | None:intergenic | 55.0% | |
| ! | AGAGCATCCACCACCAGTAC+TGG | + | chr1.4:29710918-29710937 | None:intergenic | 55.0% |
| ! | CACTTCGGATCCAGTACTGG+TGG | - | chr1.4:29710905-29710924 | MS.gene71026:CDS | 55.0% |
| !! | AGTACTGGTGGTGGATGCTC+TGG | - | chr1.4:29710917-29710936 | MS.gene71026:CDS | 55.0% |
| !! | GGTGTGGGTTAGGATGGTGA+GGG | + | chr1.4:29710498-29710517 | None:intergenic | 55.0% |
| !! | GTACTGGTGGTGGATGCTCT+GGG | - | chr1.4:29710918-29710937 | MS.gene71026:CDS | 55.0% |
| !! | TTCGGATCCAGTACTGGTGG+TGG | - | chr1.4:29710908-29710927 | MS.gene71026:CDS | 55.0% |
| AGGAAGTGAGGTGGGATGGG+TGG | + | chr1.4:29710407-29710426 | None:intergenic | 60.0% | |
| AGGGATGAGGCTGGAGTGTG+AGG | + | chr1.4:29710320-29710339 | None:intergenic | 60.0% | |
| ATGGGTGGGAGAGGGAAGAG+GGG | + | chr1.4:29710392-29710411 | None:intergenic | 60.0% | |
| GAGGTTGTGGAGTGCGGTGA+AGG | + | chr1.4:29710435-29710454 | None:intergenic | 60.0% | |
| GATGAGGCTGGAGTGTGAGG+AGG | + | chr1.4:29710317-29710336 | None:intergenic | 60.0% | |
| GATGGGTGGGAGAGGGAAGA+GGG | + | chr1.4:29710393-29710412 | None:intergenic | 60.0% | |
| GGAAGAGGGGAAGGAGAGTG+AGG | + | chr1.4:29710379-29710398 | None:intergenic | 60.0% | |
| GGAAGTGAGGTGGGATGGGT+GGG | + | chr1.4:29710406-29710425 | None:intergenic | 60.0% | |
| GGAGTGCGGTGAAGGGTTTG+AGG | + | chr1.4:29710427-29710446 | None:intergenic | 60.0% | |
| GGGAGAGGATGGAGAGGATG+AGG | + | chr1.4:29710454-29710473 | None:intergenic | 60.0% | |
| GTAACGACGCGTTTCCACGG+CGG | + | chr1.4:29710824-29710843 | None:intergenic | 60.0% | |
| GTGTTCAGCTTCGCCGTCTC+CGG | - | chr1.4:29710866-29710885 | MS.gene71026:CDS | 60.0% | |
| !! | AGATGGTGGAGCGGAGGTTG+GGG | + | chr1.4:29710520-29710539 | None:intergenic | 60.0% |
| !! | CAGATGGTGGAGCGGAGGTT+GGG | + | chr1.4:29710521-29710540 | None:intergenic | 60.0% |
| !! | GAGGGAAGCAGATGGTGGAG+CGG | + | chr1.4:29710529-29710548 | None:intergenic | 60.0% |
| !! | GGGTGTGGGTTAGGATGGTG+AGG | + | chr1.4:29710499-29710518 | None:intergenic | 60.0% |
| !! | GTGGGTTAGGATGGTGAGGG+AGG | + | chr1.4:29710495-29710514 | None:intergenic | 60.0% |
| !! | GTTGGGGGTGTGGGTTAGGA+TGG | + | chr1.4:29710504-29710523 | None:intergenic | 60.0% |
| CGGCGGTCGGATTCCAACAG+TGG | + | chr1.4:29710807-29710826 | None:intergenic | 65.0% | |
| CTGTTGGAATCCGACCGCCG+TGG | - | chr1.4:29710807-29710826 | MS.gene71026:CDS | 65.0% | |
| GAGGTGGGATGGGTGGGAGA+GGG | + | chr1.4:29710400-29710419 | None:intergenic | 65.0% | |
| GGATGGGTGGGAGAGGGAAG+AGG | + | chr1.4:29710394-29710413 | None:intergenic | 65.0% | |
| GTGGGAGAGGGAAGAGGGGA+AGG | + | chr1.4:29710388-29710407 | None:intergenic | 65.0% | |
| TGAGGTGGGATGGGTGGGAG+AGG | + | chr1.4:29710401-29710420 | None:intergenic | 65.0% | |
| ! | GGAGGTTGGGGGTGTGGGTT+AGG | + | chr1.4:29710508-29710527 | None:intergenic | 65.0% |
| !! | GATGGTGGAGCGGAGGTTGG+GGG | + | chr1.4:29710519-29710538 | None:intergenic | 65.0% |
| !! | GCAGATGGTGGAGCGGAGGT+TGG | + | chr1.4:29710522-29710541 | None:intergenic | 65.0% |
| !! | GGAAGCAGATGGTGGAGCGG+AGG | + | chr1.4:29710526-29710545 | None:intergenic | 65.0% |
| CGACGCGTTTCCACGGCGGT+CGG | + | chr1.4:29710820-29710839 | None:intergenic | 70.0% | |
| TGGAGCGGAGGTTGGGGGTG+TGG | + | chr1.4:29710514-29710533 | None:intergenic | 70.0% | |
| ! | GGAGCGGAGGTTGGGGGTGT+GGG | + | chr1.4:29710513-29710532 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 29710239 | 29711063 | 29710239 | ID=MS.gene71026 |
| chr1.4 | mRNA | 29710239 | 29711063 | 29710239 | ID=MS.gene71026.t1;Parent=MS.gene71026 |
| chr1.4 | exon | 29710239 | 29711063 | 29710239 | ID=MS.gene71026.t1.exon1;Parent=MS.gene71026.t1 |
| chr1.4 | CDS | 29710239 | 29711063 | 29710239 | ID=cds.MS.gene71026.t1;Parent=MS.gene71026.t1 |
| Gene Sequence |
| Protein sequence |
