AlfalfaGEDB | MS.gene050538

M. sativa cultivar XinJiangDaYe / MS.gene050538

KEGG: -
GO: -
PFAM: PF13450.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050538.t1	RHN49416.1	95.6	479	15	3	1	473	43	521	3.10E-266	927.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050538.t1	Q48MT7	27.4	354	223	13	77	426	5	328	1.3e-26	122.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050538.t1	A0A072U493	95.6	479	15	3	1	473	389	867	2.2e-266	927.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene050538	0.833687	4.62E-56	-1.69E-46
MS.gene049171	MS.gene050538	0.840828	6.87E-58	-1.69E-46
MS.gene049217	MS.gene050538	0.850825	1.32E-60	-1.69E-46
MS.gene049222	MS.gene050538	0.898132	7.16E-77	-1.69E-46
MS.gene049285	MS.gene050538	0.855936	4.52E-62	-1.69E-46
MS.gene049320	MS.gene050538	0.855673	5.39E-62	-1.69E-46
MS.gene049427	MS.gene050538	0.824918	6.22E-54	-1.69E-46
MS.gene049609	MS.gene050538	0.874505	6.41E-68	-1.69E-46
MS.gene049615	MS.gene050538	0.812847	3.45E-51	-1.69E-46
MS.gene049627	MS.gene050538	0.800445	1.44E-48	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050538.t1	MTR_7g115310	95.616	479	15	3	1	473	389	867	0.0	897
MS.gene050538.t1	MTR_1g106590	87.912	91	11	0	288	378	37	127	2.06e-48	170
MS.gene050538.t1	MTR_2g064620	25.538	372	233	14	83	427	3	357	1.07e-26	110

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050538.t1	AT3G04650	67.706	449	137	4	25	471	43	485	0.0	611
MS.gene050538.t1	AT1G56000	27.763	371	226	15	77	421	23	377	3.28e-36	138
MS.gene050538.t1	AT1G56000	25.526	333	209	13	113	421	5	322	6.73e-26	108
MS.gene050538.t1	AT1G55980	26.708	322	196	14	77	374	23	328	3.64e-25	106
MS.gene050538.t1	AT1G55980	26.708	322	196	14	77	374	163	468	1.64e-24	106
MS.gene050538.t1	AT1G55980	23.944	284	179	12	113	374	5	273	5.66e-15	75.5

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Find 151 sgRNAs with CRISPR-Local

Find 255 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGAACAAGGTTCCAC+AGG	0.618596	7.4:+2360159	MS.gene050538:CDS
AAACCAACAGCAAACTCTCC+AGG	0.498698	7.4:-2361239	None:intergenic
AACAGTGAGGACCGTCACTC+TGG	0.431628	7.4:-2360108	None:intergenic
AACCAACAGCAAACTCTCCA+GGG	0.596550	7.4:-2361238	None:intergenic
AACCCGATGTCATAAGCAAG+CGG	0.656989	7.4:-2359777	None:intergenic
AACCGCTTGCTTATGACATC+GGG	0.420523	7.4:+2359775	MS.gene050538:CDS
AAGGCTTATTGATGATTCTT+TGG	0.269333	7.4:+2358486	MS.gene050538:CDS
AAGTGCCACATCCCATTAAA+TGG	0.331387	7.4:-2359540	None:intergenic
AATACCAGTGTCGAAAACGG+TGG	0.722308	7.4:-2358437	None:intergenic
AATTGATTCAGTGTCATGGA+TGG	0.607121	7.4:+2360057	MS.gene050538:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAAACCACGTAAATTAGA+AGG	-	chr7.4:2361053-2361072	None:intergenic	30.0%
ACCTAGAATAATATTTGCCA+GGG	+	chr7.4:2360321-2360340	MS.gene050538:intron	30.0%
AGCTTCGTATAAAAAGGTTT+AGG	-	chr7.4:2360549-2360568	None:intergenic	30.0%
AGTAAATTGGAGCCATTTAA+TGG	+	chr7.4:2359528-2359547	MS.gene050538:CDS	30.0%
AGTAGAATAGAAACAATAGG+TGG	-	chr7.4:2359920-2359939	None:intergenic	30.0%
ATGTATAGTTATCCGACTTA+TGG	+	chr7.4:2359707-2359726	MS.gene050538:intron	30.0%
CAATAATACCAAGAAATTGC+TGG	+	chr7.4:2360081-2360100	MS.gene050538:CDS	30.0%
CAGCAATTTCTTGGTATTAT+TGG	-	chr7.4:2360083-2360102	None:intergenic	30.0%
GACAGTAGAATAGAAACAAT+AGG	-	chr7.4:2359923-2359942	None:intergenic	30.0%
GGCAAATATTATTCTAGGTA+AGG	-	chr7.4:2360320-2360339	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	2358139	2361367	2358139	ID=MS.gene050538
chr7.4	mRNA	2358139	2361367	2358139	ID=MS.gene050538.t1;Parent=MS.gene050538
chr7.4	exon	2358139	2358720	2358139	ID=MS.gene050538.t1.exon1;Parent=MS.gene050538.t1
chr7.4	CDS	2358139	2358720	2358139	ID=cds.MS.gene050538.t1;Parent=MS.gene050538.t1
chr7.4	exon	2359492	2359618	2359492	ID=MS.gene050538.t1.exon2;Parent=MS.gene050538.t1
chr7.4	CDS	2359492	2359618	2359492	ID=cds.MS.gene050538.t1;Parent=MS.gene050538.t1
chr7.4	exon	2359764	2359825	2359764	ID=MS.gene050538.t1.exon3;Parent=MS.gene050538.t1
chr7.4	CDS	2359764	2359825	2359764	ID=cds.MS.gene050538.t1;Parent=MS.gene050538.t1
chr7.4	exon	2359953	2360180	2359953	ID=MS.gene050538.t1.exon4;Parent=MS.gene050538.t1
chr7.4	CDS	2359953	2360180	2359953	ID=cds.MS.gene050538.t1;Parent=MS.gene050538.t1
chr7.4	exon	2360456	2360577	2360456	ID=MS.gene050538.t1.exon5;Parent=MS.gene050538.t1
chr7.4	CDS	2360456	2360577	2360456	ID=cds.MS.gene050538.t1;Parent=MS.gene050538.t1
chr7.4	exon	2360891	2361029	2360891	ID=MS.gene050538.t1.exon6;Parent=MS.gene050538.t1
chr7.4	CDS	2360891	2361029	2360891	ID=cds.MS.gene050538.t1;Parent=MS.gene050538.t1
chr7.4	exon	2361206	2361367	2361206	ID=MS.gene050538.t1.exon7;Parent=MS.gene050538.t1
chr7.4	CDS	2361206	2361367	2361206	ID=cds.MS.gene050538.t1;Parent=MS.gene050538.t1

Gene Sequence

>MS.gene050538

ATGTTTGGTCTGAATATGAAAACATGGAAATTGTTACCCTCCACAGCTCCATACTTAATCAACCGTCCATCTTCCTCAACCGCCGTCGCCACGGTGAAAATGGAAAAACCACCACCCTCCAAACCCCGCAGAAGATCCTCTTACGGAACTTCTCGTAAATCAATTCTCAAAAAAACCTTCAAACAAGAGCAAGTCACTTTCACCGCTCCTTTCTCCGACGAACCACTTGTCGGCATCATCGGCGGTGGTATCTCCGGTCTCATTTGCGCTATCTTCTTAGACAAACGCGGCATTCGCTCCACCGTTTTCGACACTGGTATTCATGGTCTTGGAGGAAGATTGGGAACAAGGCTTATTGATGATTCTTTGGTTTTTGACCATGCTGCTCAGTTTTTTACTGTCAATGATTCTCGTTTTGCTGAAATTGTTAATGTTTGGTTGGATAAGGGTTTGGTTCGAGAATGGAAGGGTACTGTAGGAGAGTTGAAGAATGGTGGTGAATTTCTTCCATTTTTACCCTCTCCTCCAAGATATATAGCTACTCGTGGAATGCGCTTTCTTGCTGATTCCTTACTCTCTGAGGTTAGGTTGTTCCTTATTATCAACAATCTAGTCCCTTAAATTGAAAAACGTCTCTCCATTTGGTCATTTTTCCAAATATAACACTACAGATACAATTTTAAAGGTTTTATATTTGTCTTGACCTAACAAGACATCATTGAAATCAATATGTATAACCTTTCATAGGTTTTAATGGGTGCTTGTTAGAGAGATATTTTGGTGGAGAGACTAAGGGTGCGTTTGTTTTGGATTTTTTCCAAAAAAAATCTATTTTTTTCTTTAAAAAAATCACTTTTTTCATTTTTAAGTGTTTGTTTTGGATTTTTAGAAAAATCATTTTATCAAAAAAATCTATTTTGATCCTAAAATGAAAAGCTATTAGGATTAGCTTTTCTCAAAATCTATTTTTTTCAACAACAAGGAGATAACACATGTGCATGTTAGAACTTATTTTTTTAACAAAATGGATTTTTATGGATAGTAGGCAAACACAAATAACTTTAGATTTTTTTTAAAATCTCTAAAAAAAAATCTCTAGATTCTTTTGACACAAAATCTATTTTTTTTAAAGCTGAAACAAACGCACCCTAAATTGATTGGCATTGTTTAATTTAAGGGACTAACTTAAATATTAATGAAAGTTGAGGGATTAAATTACTCGACCTTTACAATTTGAAGGACCAAGATTATCGTTAAGTTTTTCTAACTTTTGTGCTGCTATAGTTCTTAGATTTTGGTTTTTTGCTGTGGTTCCCATGTTATTTTTGTGTTAAGAAACTAGTTCTCGTGTAGACTAGCTTGGTGAATGTGGAGAGACCGTGCTGGATCAGTAAATTGGAGCCATTTAATGGGATGTGGCACTTGAGTGAAAATGGGAAACCTCGTGGGAAGTTTGATGCAATTGTTGTTGCACACAATGGTAACTTGATAATGTCTTTATTTTTTCTCTTCAAAAATAATATCTTACAAGTTCCGTTTTTACACATTTTTCAGTATGGAGTATTTATATGTATAGTTATCCGACTTATGGCTTCTTTAGTAACTATTTCTCTATTTGCCGACAGGAAAATGTGCTAACCGCTTGCTTATGACATCGGGTTTGCCATTAATTGCTAAACAAATGAAGGTCAGTGTAGGACATTCCCTTTCCGGTTCATTTGATTCGATAAACTAGTACTCAATTTTTAGCTTTATCTATTATTATATTCGTACTCATACCACCTATTGTTTCTATTCTACTGTCCATTGTTCAGAGGCTGGAATTGAGTTCAATATGGGCCCTTTTAGCAGCGTTTGAGGAACCTCTTCCTTTTCTAGAGAATACAGAAGTTCCTTTTGAAGGAGCTTTTGTGAGAGGAATTGATTCAGTGTCATGGATGGCCAATAATACCAAGAAATTGCTGGCTTCCCAGAGTGACGGTCCTCACTGTTGGACCTTTCTAAGTACTGCTGCTTATGGAAAACAGAACAAGGTTCCACAGGTAGGTGGTGAAATTTTCAAAACAGAATGATATTACGATATAAAAATTAGTTTCCTCAGTGTTAGATTGATTTTGGGGTTGCTGGATGTTTTTCGAAGGTATAGAGGAGTAATATATTGGTATTGACTCACAATTACCTTACCTAGAATAATATTTGCCAGGGATTTGATTAAAATTTATAGAAGTTATGATAACCCATGCATTTTCATTTGTGTATTGCATGCGATGATCAGAACTTTTAATAACTGAAATGTGAGCCATGTTTTGTTTATCAGGAAAATATTCCTACTGTTACAGCAACAAGGGTAAAGGAAGGCATGCTAGAAGGTGTTGAGGCTGCCCTCGGATTATCGAAAGGGTTGCTTCCTAAACCTTTTTATACGAAGCTCCAACTATGGTAAGAGTCAAAGTATTAGTATTAGTTGCTTAATTGCTTTGAAATGTCCTCCTGACATGTTTTTGTTCAGGTTAGACTTACAGAGTTTTCTTATTGTTTGTGACTTCTCAAATGCACAGTTGCTTGAATCAAAATATTAAATACACGTGCTCTCTGAGTAGCATTTCTTGCGTGATAGTTTTCAGTGACAGCTATGTTGTCAACAAATCAGACGGTCTAATTTAACATCGATAGATTATCTAAAACATCCGCAGCTCTAAACATTGTAAGTAAACTTAAAAGGTTTAAAATCGTATTATTCTGAGATTTTCAGGGGTGCAGCTCTTCCAACTAACACACCTGGAGTTCCTTGCATCTTTGATCCCTTTGGAAGGGCTGGGATATGTGGTGATTGGCTGCTAGGTTCTAATATAGAGGCAGCAGTCATAAGTGGAATTGCTCTAGCTAACCATGTATGTCACTTTCAATTGGACCTTCTAATTTACGTGGTTTGTTCGCCACAATTTTTTTTTTTAATTTAGTAATTGGACAACTTCACCATTAGTAGTAATTCATGTTTATCAAATTGTGAAAAGCTTTGACAATGCCCTTTTGTTGTTCAAAATTGTGTTTGGACATTTTGACACAGATTGCAGACTATATCCAAAGTCTCGGAACTGACCCTGGAGAGTTTGCTGTTGGTTTGAATCATGAGTTTCAACCACTGGAAGGGCATGATATTGGACAATTCCCAGGTTTGGGGTCAGAAGAAAAGATGACTGAAGCCCAAGTATATGAACTTGCCAAGTAG

Protein sequence

>MS.gene050538.t1

MFGLNMKTWKLLPSTAPYLINRPSSSTAVATVKMEKPPPSKPRRRSSYGTSRKSILKKTFKQEQVTFTAPFSDEPLVGIIGGGISGLICAIFLDKRGIRSTVFDTGIHGLGGRLGTRLIDDSLVFDHAAQFFTVNDSRFAEIVNVWLDKGLVREWKGTVGELKNGGEFLPFLPSPPRYIATRGMRFLADSLLSETSLVNVERPCWISKLEPFNGMWHLSENGKPRGKFDAIVVAHNGKCANRLLMTSGLPLIAKQMKRLELSSIWALLAAFEEPLPFLENTEVPFEGAFVRGIDSVSWMANNTKKLLASQSDGPHCWTFLSTAAYGKQNKVPQENIPTVTATRVKEGMLEGVEAALGLSKGLLPKPFYTKLQLWGAALPTNTPGVPCIFDPFGRAGICGDWLLGSNIEAAVISGIALANHIADYIQSLGTDPGEFAVGLNHEFQPLEGHDIGQFPGLGSEEKMTEAQVYELAK