AlfalfaGEDB | MS.gene71660

M. sativa cultivar XinJiangDaYe / MS.gene71660

KEGG: K07739
GO: GO:0003674 GO:0003824 GO:0005488 GO:0008080 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0048037 GO:0051536 GO:0051540
PFAM: PF00583.28 PF04055.24 PF16199.8

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71660.t1	XP_013470032.1	98.9	563	6	0	1	563	1	563	0.00E+00	1137.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71660.t1	Q93ZR1	91.3	565	47	1	1	563	1	565	1.5e-311	1069.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71660.t1	A0A072W1A9	98.9	563	6	0	1	563	1	563	0.0e+00	1137.5

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene71660.t1	TR	GNAT

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene015206	MS.gene71660	PPI
MS.gene020313	MS.gene71660	PPI
MS.gene68113	MS.gene71660	PPI
MS.gene71660	MS.gene09543	PPI
MS.gene71660	MS.gene68716	PPI
MS.gene71660	MS.gene037409	PPI
MS.gene71660	MS.gene46303	PPI
MS.gene71660	MS.gene063067	PPI
MS.gene71660	MS.gene36633	PPI
MS.gene71660	MS.gene20245	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71660.t1	MTR_1g107255	98.934	563	6	0	1	563	1	563	0.0	1155

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71660.t1	AT5G50320	91.327	565	47	1	1	563	1	565	0.0	1087

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Find 176 sgRNAs with CRISPR-Local

Find 324 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCCGTCCGAACCGCATC+TGG	0.355392	1.4:+82665775	MS.gene71660:CDS
AAAGGAGGCTTTGAAGGCCA+CGG	0.542814	1.4:+82665541	MS.gene71660:CDS
AAATCGGAGTCAGGACCGCC+AGG	0.474986	1.4:-82665877	None:intergenic
AAATTGGGATATGAGCTTGA+AGG	0.569511	1.4:+82669583	MS.gene71660:CDS
AACAACGGCTATTCCAGATG+CGG	0.680136	1.4:-82665788	None:intergenic
AACATTTGTGTCTACTGCCC+TGG	0.483658	1.4:+82665859	MS.gene71660:CDS
AACCCTTATGTGCAGACAAG+AGG	0.578250	1.4:+82666081	MS.gene71660:CDS
AACTTGTGGACATCATAGCA+AGG	0.660784	1.4:+82668396	MS.gene71660:CDS
AACTTTCATGTCCCTTCCGG+CGG	0.546193	1.4:+82666273	MS.gene71660:CDS
AAGCCCATCTGCTCTAAACA+AGG	0.553799	1.4:-82668164	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAACACATCACATTAGAT+AGG	-	chr1.4:82668255-82668274	None:intergenic	30.0%
ACCAAGAAAAACTACAAATC+AGG	+	chr1.4:82666953-82666972	MS.gene71660:intron	30.0%
ACCTTTGAGTAAACTTTAAC+CGG	+	chr1.4:82667246-82667265	MS.gene71660:intron	30.0%
ACTAAGATAGCTGTAATTTC+TGG	+	chr1.4:82669535-82669554	MS.gene71660:CDS	30.0%
ATATAGGAGAATAGTTTGAC+AGG	-	chr1.4:82667551-82667570	None:intergenic	30.0%
ATGATGATAGACAAAAGGAT+AGG	-	chr1.4:82668860-82668879	None:intergenic	30.0%
ATTATATGGCAAATGAAGGT+TGG	+	chr1.4:82668763-82668782	MS.gene71660:CDS	30.0%
CCCTAAAATGAAAAGCTATT+AGG	-	chr1.4:82666763-82666782	None:intergenic	30.0%
CCCTTCATTCAAAATAAAGA+AGG	-	chr1.4:82668952-82668971	None:intergenic	30.0%
CTAAGATAGCTGTAATTTCT+GGG	+	chr1.4:82669536-82669555	MS.gene71660:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	82665493	82669633	82665493	ID=MS.gene71660
chr1.4	mRNA	82665493	82669633	82665493	ID=MS.gene71660.t1;Parent=MS.gene71660
chr1.4	exon	82665493	82665962	82665493	ID=MS.gene71660.t1.exon1;Parent=MS.gene71660.t1
chr1.4	CDS	82665493	82665962	82665493	ID=cds.MS.gene71660.t1;Parent=MS.gene71660.t1
chr1.4	exon	82666077	82666146	82666077	ID=MS.gene71660.t1.exon2;Parent=MS.gene71660.t1
chr1.4	CDS	82666077	82666146	82666077	ID=cds.MS.gene71660.t1;Parent=MS.gene71660.t1
chr1.4	exon	82666250	82666422	82666250	ID=MS.gene71660.t1.exon3;Parent=MS.gene71660.t1
chr1.4	CDS	82666250	82666422	82666250	ID=cds.MS.gene71660.t1;Parent=MS.gene71660.t1
chr1.4	exon	82667332	82667506	82667332	ID=MS.gene71660.t1.exon4;Parent=MS.gene71660.t1
chr1.4	CDS	82667332	82667506	82667332	ID=cds.MS.gene71660.t1;Parent=MS.gene71660.t1
chr1.4	exon	82668082	82668248	82668082	ID=MS.gene71660.t1.exon5;Parent=MS.gene71660.t1
chr1.4	CDS	82668082	82668248	82668082	ID=cds.MS.gene71660.t1;Parent=MS.gene71660.t1
chr1.4	exon	82668373	82668592	82668373	ID=MS.gene71660.t1.exon6;Parent=MS.gene71660.t1
chr1.4	CDS	82668373	82668592	82668373	ID=cds.MS.gene71660.t1;Parent=MS.gene71660.t1
chr1.4	exon	82668714	82668818	82668714	ID=MS.gene71660.t1.exon7;Parent=MS.gene71660.t1
chr1.4	CDS	82668714	82668818	82668714	ID=cds.MS.gene71660.t1;Parent=MS.gene71660.t1
chr1.4	exon	82669066	82669218	82669066	ID=MS.gene71660.t1.exon8;Parent=MS.gene71660.t1
chr1.4	CDS	82669066	82669218	82669066	ID=cds.MS.gene71660.t1;Parent=MS.gene71660.t1
chr1.4	exon	82669475	82669633	82669475	ID=MS.gene71660.t1.exon9;Parent=MS.gene71660.t1
chr1.4	CDS	82669475	82669633	82669475	ID=cds.MS.gene71660.t1;Parent=MS.gene71660.t1

Gene Sequence

>MS.gene71660

ATGGCAACTGCAATGGTGGCAGAGGCAAAAAAGGCACCACGTCCTGGGAAAGGAGGCTTTGAAGGCCACGGCCTTAGTGAAGAAGAAGCACGTGTTCGAGCCATTGCAGAGATTGTAAACTCCATGGTCGACTTATCTCATAAAGGCCACAAAGTTGATCTCAACGCTCTCAAGTCTGCTGCGTGCCGTAAGTATGGCCTCTCACGTGCACCCAAACTTGTTGAGATGATTGCAGCTTTACCAGACTCCGAACGAGAGGTTCTTCTTCCCAAACTCCGAGCCAAACCCGTCCGAACCGCATCTGGAATAGCCGTTGTTGCTGTCATGTCAAAGCCTCATCGTTGCCCTCACATTGCCACCACCGGTAACATTTGTGTCTACTGCCCTGGCGGTCCTGACTCCGATTTTGAATACAGTACTCAGTCTTACACTGGTTATGAACCTACCAGTATGCGTGCAATTCGAGCAAGGTAGGTTCATTTTCATTTTGTTACAGTCATTAAAATGTAAATTGTTAAATGAAATTATCCTTTAAGTAAAATAGAACACATCTAATTCGATGACTTTGTTTGCTTTGGATTTAGGTATAACCCTTATGTGCAGACAAGAGGTAGGATTGATCAGCTTAAGCGTTTAGGTCACAGTGTAGACAAGGTTTGGAGCTCTACTGTTGTTTGTTGAGTTATTCAAGTGCATGAAATATACATGCAGATGTATCATGTAGTTATATTAATGGGTGTGGTTTATTGTTTTTCAGGTTGAGTTTATATTAATGGGTGGAACTTTCATGTCCCTTCCGGCGGATTACCGTGATTACTTTATAAGGAATCTTCATGATGCTTTGTCTGGACACACCTCTGCCAATGTAGAAGAGGCGGTGACGTACTCTGAGCATAGTGCAACCAAGTGTATTGGCATGACAATTGAAACGTGAGTTGCCTGCCATTTAATTATTTGCAAGTTGAATTTTGAGTCTTTTGTGTAAAGTTTTGAATGGAGGAGTGCTTTGGACTTTTTGGTGTTTGGACACGTGGGGAGAAGACTTGTAGTAAGGGTGCGTTTGTTTCAGCCTTAAAAAAAAAATAGATTTTGTGTTAAAAGAATCTAGAGATTTTTTTTAGAGATTTTAAAAAAAATCTGAAGTTATTTTTGTTTGCCTACTACCCATAAAAATCCAGTTTTTTTTAAAAATGAAAAAAAGAGTTTTAACTTGTACATGTGTTACCTCCTTGTTTTTGAATAAAAATAGATTTTAAGAAAAGCTAATCCTAATAGCTTTTCATTTTAGGGTCAAAATAGATTTTTTTTTTATAAAATGATTTTTCTAAAAATTCTAAACAAACACTTAAAAATGAAAAAAGTGATTTTTTTTCTAAAAAAATCTGAAACAAACGGGGCCTAAATCTTACAGGGAGAATGGATTATATGGAGGTTAATTAAATAGTTAGAACTAGCGAGAGACCAAGAAAAACTACAAATCAGGCTATTAAGATGGATTTTGGTTTAAATGATTTGTCACTAGACATGATTCACAAGAAGACATTGCGGTGCCATTTGATTCATGTAACTAAACTCCCCTTGTGAAAGAAGTTTTTTTTCTTTTGTTGTAATAGAGATAATGAAACAAGATATACTACTTGTAATAAATTTGCTGTTATGACAACTGCCGCCATGATATAAACTGGTTTAGTTATGATTTTCTAGGGTTTTGTGCATTTCGTTTTTGAGCATATCAATGATTATATTCGTGGAAACCTTTGAGTAAACTTTAACCGGTAATAGTTAATTTAACACATCAATTCACCGCTTATCAAGTTTTGCACTTCTTAAATTTCTCAGGAGGCCAGATTATTGTCTTGGGCCTCACCTGCGACAAATGCTTTCTTACGGTTGTACACGATTGGAGATTGGAGTCCAAAGCACTTACGAGGATGTTGCTCGTGACACTAATAGAGGACATACTGTTGCTGCTGTAGCTGATTGTTTTTGCCTGGCTAAAGATGCCGGTTTCAAGGTTTGTTACTGTCCTATCAATCTGCACGTTGTCACAGCTGTCCTGTCAAACTATTCTCCTATATGCTCCTTATGCTGAATGTGTTTAAAAATTGATATATACATATTCCTGCACTCAAAGTTGTAATGAACTTAATGACATTGTGTGCTGTCTCGTTTTAAATAGATTCATTGGTATAATATTAATAAGCAACTTTCTATAGGCATATTACTTTCTAGTTGTTTGGATTTCCCTAATTGTACCCCTTTCAAATACAAACTAGGCAGTAGGTTGGTCATGAGAGTTGAAAGATATACTACCTCCGTCCCGGTATAATTGACCTACTTTGGTTTTTCACACAGATTAAGAAAAGTGTATAAATAAAGGAAAAAGTAGAATATATTGTATTGGGAATGATAAAAGTAGTATTATTTAGTGTTATATTGTATTGGGAATGATGAAAGTTGTATTGAAAATTGAAATGAGTCAGTTATTTTGGGACACTTTTTTTTAGAAAATGGGTCAGTTATTCCGGGACGGAGGGAGTACTATTTGTTCTCATTTTATGTTTTTTTTTTCTTTGGCTTTTGCTTTAGGTAGTTGCTCACATGATGCCTGATCTTCCAAATGTTGGTGTTGAAAGGGACATGGAAAGTTTCCGAGAGTTTTTTGAAAGTCCCTTGTTTAGAGCAGATGGGCTTAAAATTTACCCCACTCTTGTAATACGTGGAACTGGGCTTTATGAGCTCTGGAAAACTGGCAGGTACCTATCTAATGTGATGTGTTCTTTCAAATGCTTCTTTCTCAAGCTCTTTAGTTTCTATCTCATTATTCATCAGGTTTAAAAGGCATGTGGAAAGTCAATTTGTTTGTTAACATCATTTTAGGTATAGAAATTATCCACCTGAGCAACTTGTGGACATCATAGCAAGGATCCTTGCAATGGTACCTCCATGGACGCGTGTTTATAGAGTTCAGCGGGATATTCCAATGCCTTTGGTGACCTCTGGGGTTGAGAAAGGGAATCTAAGGGAGTTAGCATTAGCTCGAATGGAAGACTTGGGTTTAAAATGTCGTGATGTTCGGACCAGAGAAGCTGGAATCCAGGTAATTATCTAGAACCAATCTCGTCTTGAAATTTAATTTAACAAGGATTTGTAAATCTTTACACACTTTGTTTACTAGTATTATTTTGGAGCACCAACCGACATTCTGTATTTCTTTGTAGGATATTCATCACCAAATTAAACCAGAAGAGGTGGAACTTGTTCGTCGTGATTATATGGCAAATGAAGGTTGGGAAACATTTTTGTCATATGAAGATACACGGCAGGTGATTTTACCTTCTTTCCTCAGCCTCTCTTATTAGTGCCTATCCTTTTGTCTATCATCATTTTTTACTTTGACTTGTAACGTGTGAGTCTAGTTTGTAGCTGGCACTGGTTCCTGTTGTGCATATTTTGCCTTCTTTATTTTGAATGAAGGGGACATCTCTTAACCTGTTCTTACCTTTAGTGTAAATTTGTTGTTGTTGATGAAACATGGCCATGACATTGGTTGTGCTGTCTTCTCTTGAGCAGGATATCCTTGTTGGTTTGTTACGACTGCGAAAATGTGGCCGTAACACTACTTGTCCAGAGCTTATGGGTAAGTGTTCTATTGTTCGTGAGCTCCATGTTTATGGAACTGCTGTACCGGTTCATGGGCGGGATTCTGACAAGCTACAACACCAGGTAAAACTGTCATGCTAATACATAGATGACATGTGATATCATTACGAATATTCACATGTTCTTATTGGATACTATCTGAGTGTAATTGCTGAGTTTTGGTTTTGAACTGTATATCAAATTTTTTAGCCATGTATAATATCCAAGAAGATACATATGGATATTCACAAATCACAATGCAGCTTTTCCAAGGATACCAATAACATGTCCCTCATTGTACTCCAATTGACCTACTTTTGACCAAAATTATTGTTAACAGGGTTATGGTACACTTCTTATGGAGGAGGCTGAGCGGATTGCTTCGAAAGAACACAGATCAACTAAGATAGCTGTAATTTCTGGGGTTGGCACACGCCATTACTACAGAAAATTGGGATATGAGCTTGAAGGGCCTTACATGATGAAATACCTAATGTAA

Protein sequence

>MS.gene71660.t1

MATAMVAEAKKAPRPGKGGFEGHGLSEEEARVRAIAEIVNSMVDLSHKGHKVDLNALKSAACRKYGLSRAPKLVEMIAALPDSEREVLLPKLRAKPVRTASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQTRGRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHSATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDMESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIIARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMEDLGLKCRDVRTREAGIQDIHHQIKPEEVELVRRDYMANEGWETFLSYEDTRQDILVGLLRLRKCGRNTTCPELMGKCSIVRELHVYGTAVPVHGRDSDKLQHQGYGTLLMEEAERIASKEHRSTKIAVISGVGTRHYYRKLGYELEGPYMMKYLM