AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene71660


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene71660.t1 MTR_1g107255 98.934 563 6 0 1 563 1 563 0.0 1155
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene71660.t1 AT5G50320 91.327 565 47 1 1 563 1 565 0.0 1087

Find 176 sgRNAs with CRISPR-Local

Find 324 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTCGTGAGCTCCATGTTTA+TGG 0.109347 1.4:+82669147 MS.gene71660:CDS
CCACCTCTTCTGGTTTAATT+TGG 0.193138 1.4:-82668725 None:intergenic
TCAGGTTGAGTTTATATTAA+TGG 0.195676 1.4:+82666246 MS.gene71660:intron
CACTACTTGTCCAGAGCTTA+TGG 0.210436 1.4:+82669110 MS.gene71660:CDS
ACGCCATTACTACAGAAAAT+TGG 0.214514 1.4:+82669567 MS.gene71660:CDS
CGAACAAGTTCCACCTCTTC+TGG 0.222979 1.4:-82668735 None:intergenic
ACTAAGATAGCTGTAATTTC+TGG 0.226240 1.4:+82669535 MS.gene71660:CDS
GACGGGTTTGGCTCGGAGTT+TGG 0.246198 1.4:-82665761 None:intergenic
ATTACCGTGATTACTTTATA+AGG 0.254776 1.4:+82666296 MS.gene71660:CDS
ACTTGTTCGTCGTGATTATA+TGG 0.272919 1.4:+82668749 MS.gene71660:CDS
TGCAATCATCTCAACAAGTT+TGG 0.275543 1.4:-82665704 None:intergenic
CCAATGCCTTTGGTGACCTC+TGG 0.281758 1.4:+82668473 MS.gene71660:CDS
CAGGTTGAGTTTATATTAAT+GGG 0.294302 1.4:+82666247 MS.gene71660:intron
GGGTTATGGTACACTTCTTA+TGG 0.305200 1.4:+82669474 MS.gene71660:intron
CTACCTCTTGTCTGCACATA+AGG 0.308325 1.4:-82666084 None:intergenic
ACGGGTTTGGCTCGGAGTTT+GGG 0.323050 1.4:-82665760 None:intergenic
CTTGAGCAGGATATCCTTGT+TGG 0.326582 1.4:+82669057 MS.gene71660:intron
AATTATTGTTAACAGGGTTA+TGG 0.336285 1.4:+82669460 MS.gene71660:intron
TTACTGATTATTATTACATT+AGG 0.340713 1.4:-82669624 None:intergenic
ATTGATCAGCTTAAGCGTTT+AGG 0.349355 1.4:+82666108 MS.gene71660:CDS
AAACCCGTCCGAACCGCATC+TGG 0.355392 1.4:+82665775 MS.gene71660:CDS
CTTTATGAGCTCTGGAAAAC+TGG 0.356965 1.4:+82668223 MS.gene71660:CDS
CAATGCCTTTGGTGACCTCT+GGG 0.357014 1.4:+82668474 MS.gene71660:CDS
ACTCTTGTAATACGTGGAAC+TGG 0.357820 1.4:+82668199 MS.gene71660:CDS
GGGTTGAGAAAGGGAATCTA+AGG 0.374003 1.4:+82668495 MS.gene71660:CDS
ATTAGGTATTTCATCATGTA+AGG 0.374054 1.4:-82669607 None:intergenic
AGGAGGCCAGATTATTGTCT+TGG 0.377113 1.4:+82667330 MS.gene71660:intron
AATCTTCATGATGCTTTGTC+TGG 0.377549 1.4:+82666319 MS.gene71660:CDS
TACCTGGATTCCAGCTTCTC+TGG 0.383322 1.4:-82668573 None:intergenic
TCTGCTGCGTGCCGTAAGTA+TGG 0.383722 1.4:+82665667 MS.gene71660:CDS
TCCCTTTCAACACCAACATT+TGG 0.384171 1.4:-82668109 None:intergenic
TGGAACTTTCATGTCCCTTC+CGG 0.386776 1.4:+82666270 MS.gene71660:CDS
GGAACTGCTGTACCGGTTCA+TGG 0.389741 1.4:+82669168 MS.gene71660:CDS
AGAACCTCTCGTTCGGAGTC+TGG 0.399137 1.4:-82665733 None:intergenic
CTAAGATAGCTGTAATTTCT+GGG 0.402023 1.4:+82669536 MS.gene71660:CDS
CGCCATTACTACAGAAAATT+GGG 0.402981 1.4:+82669568 MS.gene71660:CDS
CTGAGTACTGTATTCAAAAT+CGG 0.405571 1.4:-82665893 None:intergenic
GCGGGATATTCCAATGCCTT+TGG 0.406417 1.4:+82668463 MS.gene71660:CDS
GGCTAAAGATGCCGGTTTCA+AGG 0.407082 1.4:+82667485 MS.gene71660:CDS
GCAATCATCTCAACAAGTTT+GGG 0.412290 1.4:-82665703 None:intergenic
CCTGGGAAAGGAGGCTTTGA+AGG 0.415150 1.4:+82665535 MS.gene71660:CDS
GTTTAAAATGTCGTGATGTT+CGG 0.419207 1.4:+82668549 MS.gene71660:CDS
AGATGCGGTTCGGACGGGTT+TGG 0.419639 1.4:-82665773 None:intergenic
GAGCGTTGAGATCAACTTTG+TGG 0.429078 1.4:-82665639 None:intergenic
CAACATCCTCGTAAGTGCTT+TGG 0.432775 1.4:-82667407 None:intergenic
GTGACCTCTGGGGTTGAGAA+AGG 0.437552 1.4:+82668485 MS.gene71660:CDS
GGAGGCCAGATTATTGTCTT+GGG 0.438031 1.4:+82667331 MS.gene71660:intron
TTCTTACGGTTGTACACGAT+TGG 0.440324 1.4:+82667374 MS.gene71660:CDS
ACACCAACATTTGGAAGATC+AGG 0.441020 1.4:-82668100 None:intergenic
ATTATATGGCAAATGAAGGT+TGG 0.442902 1.4:+82668763 MS.gene71660:CDS
TGCTCGAATTGCACGCATAC+TGG 0.443181 1.4:-82665938 None:intergenic
TGCTGTACCGGTTCATGGGC+GGG 0.453368 1.4:+82669173 MS.gene71660:CDS
GGTTGTACACGATTGGAGAT+TGG 0.457491 1.4:+82667381 MS.gene71660:CDS
TCAGAATCCCGCCCATGAAC+CGG 0.459387 1.4:-82669180 None:intergenic
GACACAAATGTTACCGGTGG+TGG 0.462023 1.4:-82665848 None:intergenic
CGGTTCGGACGGGTTTGGCT+CGG 0.462397 1.4:-82665768 None:intergenic
TTCCAAATGTTGGTGTTGAA+AGG 0.463184 1.4:+82668107 MS.gene71660:CDS
GCAGTAGACACAAATGTTAC+CGG 0.465327 1.4:-82665854 None:intergenic
ACTACTTGTCCAGAGCTTAT+GGG 0.466121 1.4:+82669111 MS.gene71660:CDS
TCCAAATGTTGGTGTTGAAA+GGG 0.466271 1.4:+82668108 MS.gene71660:CDS
AAATCGGAGTCAGGACCGCC+AGG 0.474986 1.4:-82665877 None:intergenic
GATGTTCGGACCAGAGAAGC+TGG 0.475031 1.4:+82668563 MS.gene71660:CDS
TTATATGGCAAATGAAGGTT+GGG 0.475457 1.4:+82668764 MS.gene71660:CDS
CCAGAGGTCACCAAAGGCAT+TGG 0.478943 1.4:-82668473 None:intergenic
AGTCCCTTGTTTAGAGCAGA+TGG 0.482729 1.4:+82668160 MS.gene71660:CDS
AACATTTGTGTCTACTGCCC+TGG 0.483658 1.4:+82665859 MS.gene71660:CDS
CCTTCAAAGCCTCCTTTCCC+AGG 0.487403 1.4:-82665535 None:intergenic
GAACTGGGCTTTATGAGCTC+TGG 0.487484 1.4:+82668215 MS.gene71660:CDS
CTCTTGTAATACGTGGAACT+GGG 0.488163 1.4:+82668200 MS.gene71660:CDS
GGGAAGAAGAACCTCTCGTT+CGG 0.489882 1.4:-82665740 None:intergenic
CTGTATTCAAAATCGGAGTC+AGG 0.494942 1.4:-82665886 None:intergenic
GGCAACTGCAATGGTGGCAG+AGG 0.495159 1.4:+82665495 MS.gene71660:CDS
TACCTCTTGTCTGCACATAA+GGG 0.499999 1.4:-82666083 None:intergenic
ACAGTAACAAACCTTGAAAC+CGG 0.500422 1.4:-82667496 None:intergenic
TGTTTATGGAACTGCTGTAC+CGG 0.502199 1.4:+82669161 MS.gene71660:CDS
TGAGGCCCAAGACAATAATC+TGG 0.507785 1.4:-82667336 None:intergenic
TATTCCAGATGCGGTTCGGA+CGG 0.509432 1.4:-82665779 None:intergenic
ATAGCTGTAATTTCTGGGGT+TGG 0.510369 1.4:+82669541 MS.gene71660:CDS
CATAGTGCAACCAAGTGTAT+TGG 0.511814 1.4:+82666385 MS.gene71660:CDS
ATTCCAGATGCGGTTCGGAC+GGG 0.513072 1.4:-82665778 None:intergenic
GACCAGAGAAGCTGGAATCC+AGG 0.513139 1.4:+82668571 MS.gene71660:CDS
TGAAACCGGCATCTTTAGCC+AGG 0.513631 1.4:-82667482 None:intergenic
CGGCTATTCCAGATGCGGTT+CGG 0.514134 1.4:-82665783 None:intergenic
CTGCGACAAATGCTTTCTTA+CGG 0.521566 1.4:+82667360 MS.gene71660:CDS
CACGTGCTTCTTCTTCACTA+AGG 0.522717 1.4:-82665564 None:intergenic
CGTGATTATATGGCAAATGA+AGG 0.524748 1.4:+82668759 MS.gene71660:CDS
GGAGTTAGCATTAGCTCGAA+TGG 0.524838 1.4:+82668517 MS.gene71660:CDS
AATTGTCATGCCAATACACT+TGG 0.525376 1.4:-82666395 None:intergenic
ACTCTATAAACACGCGTCCA+TGG 0.528985 1.4:-82668437 None:intergenic
AAGCCTCCTTTCCCAGGACG+TGG 0.530868 1.4:-82665529 None:intergenic
CGCCTCTTCTACATTGGCAG+AGG 0.532370 1.4:-82666347 None:intergenic
TGCCCTCACATTGCCACCAC+CGG 0.535961 1.4:+82665835 MS.gene71660:CDS
AATTGGGATATGAGCTTGAA+GGG 0.539350 1.4:+82669584 MS.gene71660:CDS
CGTCACCGCCTCTTCTACAT+TGG 0.539713 1.4:-82666353 None:intergenic
TGGTACACTTCTTATGGAGG+AGG 0.541142 1.4:+82669480 MS.gene71660:CDS
AAAGGAGGCTTTGAAGGCCA+CGG 0.542814 1.4:+82665541 MS.gene71660:CDS
ATTAGCTCGAATGGAAGACT+TGG 0.543470 1.4:+82668526 MS.gene71660:CDS
GTCATATGAAGATACACGGC+AGG 0.543921 1.4:+82668797 MS.gene71660:CDS
AACTTTCATGTCCCTTCCGG+CGG 0.546193 1.4:+82666273 MS.gene71660:CDS
GAACTGCTGTACCGGTTCAT+GGG 0.546285 1.4:+82669169 MS.gene71660:CDS
ATGAGCTCTGGAAAACTGGC+AGG 0.546949 1.4:+82668227 MS.gene71660:CDS
GAACACTTACCCATAAGCTC+TGG 0.547667 1.4:-82669120 None:intergenic
ATGATGTCCACAAGTTGCTC+AGG 0.548538 1.4:-82668389 None:intergenic
AAGCCCATCTGCTCTAAACA+AGG 0.553799 1.4:-82668164 None:intergenic
CCAAATTAAACCAGAAGAGG+TGG 0.554019 1.4:+82668725 MS.gene71660:CDS
TGACCTCTGGGGTTGAGAAA+GGG 0.554088 1.4:+82668486 MS.gene71660:CDS
CTGCTGTACCGGTTCATGGG+CGG 0.556681 1.4:+82669172 MS.gene71660:CDS
GCTCTGGACAAGTAGTGTTA+CGG 0.560794 1.4:-82669104 None:intergenic
CACGTGAGAGGCCATACTTA+CGG 0.562539 1.4:-82665678 None:intergenic
ATGGTCGACTTATCTCATAA+AGG 0.565397 1.4:+82665616 MS.gene71660:CDS
CTTCTTCTTCACTAAGGCCG+TGG 0.565667 1.4:-82665558 None:intergenic
AAGGCACCACGTCCTGGGAA+AGG 0.568173 1.4:+82665523 MS.gene71660:CDS
AAATTGGGATATGAGCTTGA+AGG 0.569511 1.4:+82669583 MS.gene71660:CDS
ATCGAGAATGGCAACTGCAA+TGG 0.572062 1.4:+82665486 None:intergenic
GCGTGTTTATAGAGTTCAGC+GGG 0.572842 1.4:+82668445 MS.gene71660:CDS
AACCCTTATGTGCAGACAAG+AGG 0.578250 1.4:+82666081 MS.gene71660:CDS
ATGTCCACAAGTTGCTCAGG+TGG 0.579117 1.4:-82668386 None:intergenic
TCCTTGCAATGGTACCTCCA+TGG 0.582174 1.4:+82668420 MS.gene71660:CDS
TTAGCTCGAATGGAAGACTT+GGG 0.582791 1.4:+82668527 MS.gene71660:CDS
CGTAAGAAAGCATTTGTCGC+AGG 0.582996 1.4:-82667359 None:intergenic
TTATCCACCTGAGCAACTTG+TGG 0.584183 1.4:+82668382 MS.gene71660:CDS
TTGTTACGACTGCGAAAATG+TGG 0.584825 1.4:+82669081 MS.gene71660:CDS
CACCTCTGCCAATGTAGAAG+AGG 0.586680 1.4:+82666345 MS.gene71660:CDS
CGAATTGCACGCATACTGGT+AGG 0.587485 1.4:-82665934 None:intergenic
GTTGAGTTTATATTAATGGG+TGG 0.587623 1.4:+82666250 MS.gene71660:CDS
GTCCCTTGTTTAGAGCAGAT+GGG 0.588499 1.4:+82668161 MS.gene71660:CDS
GTTGCTCGTGACACTAATAG+AGG 0.589637 1.4:+82667426 MS.gene71660:CDS
TGCAGAGATTGTAAACTCCA+TGG 0.589639 1.4:+82665597 MS.gene71660:CDS
TTCTGACAAGCTACAACACC+AGG 0.589825 1.4:+82669197 MS.gene71660:CDS
CAAGTTTGGGTGCACGTGAG+AGG 0.590702 1.4:-82665690 None:intergenic
TCACCAAATTAAACCAGAAG+AGG 0.591716 1.4:+82668722 MS.gene71660:CDS
GGAGTTTACAATCTCTGCAA+TGG 0.592885 1.4:-82665593 None:intergenic
ATGCCTGATCTTCCAAATGT+TGG 0.593013 1.4:+82668097 MS.gene71660:CDS
TACCCCACTCTTGTAATACG+TGG 0.597220 1.4:+82668193 MS.gene71660:CDS
AAGTAATCACGGTAATCCGC+CGG 0.605266 1.4:-82666289 None:intergenic
GAAAGCATTTGTCGCAGGTG+AGG 0.608219 1.4:-82667354 None:intergenic
GTTCCACGTATTACAAGAGT+GGG 0.609518 1.4:-82668196 None:intergenic
GAGAATGGCAACTGCAATGG+TGG 0.611617 1.4:+82665489 None:intergenic
CTCTGCCAATGTAGAAGAGG+CGG 0.613175 1.4:+82666348 MS.gene71660:CDS
GCACCACGTCCTGGGAAAGG+AGG 0.613203 1.4:+82665526 MS.gene71660:CDS
TCCATGGAGGTACCATTGCA+AGG 0.615787 1.4:-82668421 None:intergenic
AGTTCCACGTATTACAAGAG+TGG 0.617723 1.4:-82668197 None:intergenic
GATTCCTTATAAAGTAATCA+CGG 0.618997 1.4:-82666300 None:intergenic
ATCACGGTAATCCGCCGGAA+GGG 0.620461 1.4:-82666284 None:intergenic
TTTAGGTCACAGTGTAGACA+AGG 0.621502 1.4:+82666125 MS.gene71660:CDS
TACAGTACTCAGTCTTACAC+TGG 0.624637 1.4:+82665904 MS.gene71660:CDS
TTACCGGTGGTGGCAATGTG+AGG 0.625457 1.4:-82665838 None:intergenic
TTATGGTACACTTCTTATGG+AGG 0.625503 1.4:+82669477 MS.gene71660:CDS
AATCACGGTAATCCGCCGGA+AGG 0.629594 1.4:-82666285 None:intergenic
CTTTGACATGACAGCAACAA+CGG 0.631924 1.4:-82665803 None:intergenic
GTACAGCAGTTCCATAAACA+TGG 0.632941 1.4:-82669158 None:intergenic
AATGCCTTTGGTGACCTCTG+GGG 0.633442 1.4:+82668475 MS.gene71660:CDS
CTTATGTGCAGACAAGAGGT+AGG 0.635365 1.4:+82666085 MS.gene71660:CDS
TAAGATAGCTGTAATTTCTG+GGG 0.637498 1.4:+82669537 MS.gene71660:CDS
TTTACCAGACTCCGAACGAG+AGG 0.637913 1.4:+82665729 MS.gene71660:CDS
AGCCCATCTGCTCTAAACAA+GGG 0.651856 1.4:-82668163 None:intergenic
ATTTGTGTCTACTGCCCTGG+CGG 0.653081 1.4:+82665862 MS.gene71660:CDS
AATCGGAGTCAGGACCGCCA+GGG 0.654250 1.4:-82665876 None:intergenic
CATAGCAAGGATCCTTGCAA+TGG 0.656475 1.4:+82668409 MS.gene71660:CDS
GTATGCGTGCAATTCGAGCA+AGG 0.657253 1.4:+82665941 MS.gene71660:CDS
AACTTGTGGACATCATAGCA+AGG 0.660784 1.4:+82668396 MS.gene71660:CDS
TGTTGGTGTTGAAAGGGACA+TGG 0.661690 1.4:+82668114 MS.gene71660:CDS
TCAACCCCAGAGGTCACCAA+AGG 0.669888 1.4:-82668479 None:intergenic
TTTATGAGATAAGTCGACCA+TGG 0.671183 1.4:-82665614 None:intergenic
TTCTTATGGAGGAGGCTGAG+CGG 0.672319 1.4:+82669488 MS.gene71660:CDS
TGGAGTCCAAAGCACTTACG+AGG 0.676860 1.4:+82667401 MS.gene71660:CDS
GCAATGTGAGGGCAACGATG+AGG 0.677142 1.4:-82665826 None:intergenic
AACAACGGCTATTCCAGATG+CGG 0.680136 1.4:-82665788 None:intergenic
GGTTGAGAAAGGGAATCTAA+GGG 0.683574 1.4:+82668496 MS.gene71660:CDS
TACCGGTGGTGGCAATGTGA+GGG 0.686745 1.4:-82665837 None:intergenic
ATTCCCTTTCTCAACCCCAG+AGG 0.690536 1.4:-82668489 None:intergenic
CGCGTGTTTATAGAGTTCAG+CGG 0.704736 1.4:+82668444 MS.gene71660:CDS
GTAGACACAAATGTTACCGG+TGG 0.711036 1.4:-82665851 None:intergenic
CTATAAACACGCGTCCATGG+AGG 0.720117 1.4:-82668434 None:intergenic
GCAGTCGTAACAAACCAACA+AGG 0.760494 1.4:-82669071 None:intergenic
TTCCACGTATTACAAGAGTG+GGG 0.762155 1.4:-82668195 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAAAATCTATTTTTTTTTTA+AGG - chr1.4:82666565-82666584 None:intergenic 10.0%
!!! TTTTATGTTTTTTTTTTCTT+TGG + chr1.4:82668047-82668066 MS.gene71660:intron 10.0%
!!! TTTTCATTTTTAAAAAAAAC+TGG - chr1.4:82666670-82666689 None:intergenic 10.0%
!! AAAAGTAGAATATATTGTAT+TGG + chr1.4:82667874-82667893 MS.gene71660:intron 15.0%
!! AAAGTAGAATATATTGTATT+GGG + chr1.4:82667875-82667894 MS.gene71660:intron 15.0%
!! ATTTAGTGTTATATTGTATT+GGG + chr1.4:82667916-82667935 MS.gene71660:intron 15.0%
!! TATCATGTAGTTATATTAAT+GGG + chr1.4:82666207-82666226 MS.gene71660:intron 15.0%
!! TATTTAGTGTTATATTGTAT+TGG + chr1.4:82667915-82667934 MS.gene71660:intron 15.0%
!!! AAAAAAAACTGGATTTTTAT+GGG - chr1.4:82666659-82666678 None:intergenic 15.0%
!!! TAAAAAAAACTGGATTTTTA+TGG - chr1.4:82666660-82666679 None:intergenic 15.0%
!!! TAAGAAAAGTGTATAAATAA+AGG + chr1.4:82667850-82667869 MS.gene71660:intron 15.0%
!!! TCTATTTTTATTCAAAAACA+AGG - chr1.4:82666723-82666742 None:intergenic 15.0%
!!! TCTTGAAATTTAATTTAACA+AGG + chr1.4:82668616-82668635 MS.gene71660:intron 15.0%
!!! TTTGTTTACTAGTATTATTT+TGG + chr1.4:82668659-82668678 MS.gene71660:intron 15.0%
!! AAAAAAAACTTCTTTCACAA+GGG - chr1.4:82667071-82667090 None:intergenic 20.0%
!! AAAAAATGATGATAGACAAA+AGG - chr1.4:82668865-82668884 None:intergenic 20.0%
!! ATTAATAAGCAACTTTCTAT+AGG + chr1.4:82667687-82667706 MS.gene71660:intron 20.0%
!! GTATCATGTAGTTATATTAA+TGG + chr1.4:82666206-82666225 MS.gene71660:intron 20.0%
!! TCAACTTGCAAATAATTAAA+TGG - chr1.4:82666438-82666457 None:intergenic 20.0%
!! TGTGTTAAATTAACTATTAC+CGG - chr1.4:82667268-82667287 None:intergenic 20.0%
!!! ATGTGTTCTATTTTACTTAA+AGG - chr1.4:82666024-82666043 None:intergenic 20.0%
!!! ATTTTTATTCAAAAACAAGG+AGG - chr1.4:82666720-82666739 None:intergenic 20.0%
!!! CTAAAAAAATCTGAAACAAA+CGG + chr1.4:82666865-82666884 MS.gene71660:intron 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG + chr1.4:82667985-82668004 MS.gene71660:intron 20.0%
!!! TAAAAAAATCTGAAACAAAC+GGG + chr1.4:82666866-82666885 MS.gene71660:intron 20.0%
!!! TTGTTTGTTAACATCATTTT+AGG + chr1.4:82668351-82668370 MS.gene71660:intron 20.0%
! AAAAAAACTTCTTTCACAAG+GGG - chr1.4:82667070-82667089 None:intergenic 25.0%
! AACTAAACCAGTTTATATCA+TGG - chr1.4:82667165-82667184 None:intergenic 25.0%
! AATATCCAAGAAGATACATA+TGG + chr1.4:82669353-82669372 MS.gene71660:intron 25.0%
! AATATCCATATGTATCTTCT+TGG - chr1.4:82669361-82669380 None:intergenic 25.0%
! AATTATTGTTAACAGGGTTA+TGG + chr1.4:82669460-82669479 MS.gene71660:intron 25.0%
! ATCTTCTTGGATATTATACA+TGG - chr1.4:82669348-82669367 None:intergenic 25.0%
! ATTAAATTTCAAGACGAGAT+TGG - chr1.4:82668610-82668629 None:intergenic 25.0%
! ATTACCGTGATTACTTTATA+AGG + chr1.4:82666296-82666315 MS.gene71660:CDS 25.0%
! ATTAGGTATTTCATCATGTA+AGG - chr1.4:82669610-82669629 None:intergenic 25.0%
! CAACAACAAATTTACACTAA+AGG - chr1.4:82668997-82669016 None:intergenic 25.0%
! CATATCAATGATTATATTCG+TGG + chr1.4:82667221-82667240 MS.gene71660:intron 25.0%
! CATTATTCATCAGGTTTAAA+AGG + chr1.4:82668312-82668331 MS.gene71660:intron 25.0%
! GAAAAAAAACTTCTTTCACA+AGG - chr1.4:82667072-82667091 None:intergenic 25.0%
! GAATATTCACATGTTCTTAT+TGG + chr1.4:82669264-82669283 MS.gene71660:intron 25.0%
! GACCAAAATTATTGTTAACA+GGG + chr1.4:82669454-82669473 MS.gene71660:intron 25.0%
! GATTCCTTATAAAGTAATCA+CGG - chr1.4:82666303-82666322 None:intergenic 25.0%
! GTTTAGTTACATGAATCAAA+TGG - chr1.4:82667046-82667065 None:intergenic 25.0%
! TACAAAGAAATACAGAATGT+CGG - chr1.4:82668693-82668712 None:intergenic 25.0%
! TGACCAAAATTATTGTTAAC+AGG + chr1.4:82669453-82669472 MS.gene71660:intron 25.0%
! TTTCTATCTCATTATTCATC+AGG + chr1.4:82668303-82668322 MS.gene71660:intron 25.0%
!! AAAAAAATCTGAAACAAACG+GGG + chr1.4:82666867-82666886 MS.gene71660:intron 25.0%
!! AACCCTGTTAACAATAATTT+TGG - chr1.4:82669459-82669478 None:intergenic 25.0%
!! CAGGTTGAGTTTATATTAAT+GGG + chr1.4:82666247-82666266 MS.gene71660:intron 25.0%
!! CCTAATAGCTTTTCATTTTA+GGG + chr1.4:82666760-82666779 MS.gene71660:intron 25.0%
!! GGTTTAGTTATGATTTTCTA+GGG + chr1.4:82667176-82667195 MS.gene71660:intron 25.0%
!! TCCTAATAGCTTTTCATTTT+AGG + chr1.4:82666759-82666778 MS.gene71660:intron 25.0%
!! TGGTTTAGTTATGATTTTCT+AGG + chr1.4:82667175-82667194 MS.gene71660:intron 25.0%
!! TTGAAATGAGTCAGTTATTT+TGG + chr1.4:82667962-82667981 MS.gene71660:intron 25.0%
!! TTTTAAACACATTCAGCATA+AGG - chr1.4:82667577-82667596 None:intergenic 25.0%
!! TTTTGTCATATGAAGATACA+CGG + chr1.4:82668793-82668812 MS.gene71660:CDS 25.0%
!!! CAATAATTTTGGTCAAAAGT+AGG - chr1.4:82669448-82669467 None:intergenic 25.0%
!!! CATATTACTTTCTAGTTGTT+TGG + chr1.4:82667710-82667729 MS.gene71660:intron 25.0%
!!! CCTTCTTTATTTTGAATGAA+GGG + chr1.4:82668949-82668968 MS.gene71660:intron 25.0%
!!! CTCGTTTTAAATAGATTCAT+TGG + chr1.4:82667658-82667677 MS.gene71660:intron 25.0%
!!! CTTCTTTATTTTGAATGAAG+GGG + chr1.4:82668950-82668969 MS.gene71660:intron 25.0%
!!! CTTTTGTGTAAAGTTTTGAA+TGG + chr1.4:82666467-82666486 MS.gene71660:intron 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG + chr1.4:82667984-82668003 MS.gene71660:intron 25.0%
!!! TCAGGTTGAGTTTATATTAA+TGG + chr1.4:82666246-82666265 MS.gene71660:intron 25.0%
!!! TGAAATGAGTCAGTTATTTT+GGG + chr1.4:82667963-82667982 MS.gene71660:intron 25.0%
AAGAACACATCACATTAGAT+AGG - chr1.4:82668255-82668274 None:intergenic 30.0%
ACCAAGAAAAACTACAAATC+AGG + chr1.4:82666953-82666972 MS.gene71660:intron 30.0%
ACCTTTGAGTAAACTTTAAC+CGG + chr1.4:82667246-82667265 MS.gene71660:intron 30.0%
ACTAAGATAGCTGTAATTTC+TGG + chr1.4:82669535-82669554 MS.gene71660:CDS 30.0%
ATATAGGAGAATAGTTTGAC+AGG - chr1.4:82667551-82667570 None:intergenic 30.0%
ATGATGATAGACAAAAGGAT+AGG - chr1.4:82668860-82668879 None:intergenic 30.0%
ATTATATGGCAAATGAAGGT+TGG + chr1.4:82668763-82668782 MS.gene71660:CDS 30.0%
CCCTAAAATGAAAAGCTATT+AGG - chr1.4:82666763-82666782 None:intergenic 30.0%
CCCTTCATTCAAAATAAAGA+AGG - chr1.4:82668952-82668971 None:intergenic 30.0%
CTAAGATAGCTGTAATTTCT+GGG + chr1.4:82669536-82669555 MS.gene71660:CDS 30.0%
CTTGCAAATAATTAAATGGC+AGG - chr1.4:82666434-82666453 None:intergenic 30.0%
GACATTCTGTATTTCTTTGT+AGG + chr1.4:82668692-82668711 MS.gene71660:intron 30.0%
GTTGAGTTTATATTAATGGG+TGG + chr1.4:82666250-82666269 MS.gene71660:CDS 30.0%
TAAACCAGTTTATATCATGG+CGG - chr1.4:82667162-82667181 None:intergenic 30.0%
TAAGATAGCTGTAATTTCTG+GGG + chr1.4:82669537-82669556 MS.gene71660:CDS 30.0%
TACAAATCAGGCTATTAAGA+TGG + chr1.4:82666965-82666984 MS.gene71660:intron 30.0%
TTATATGGCAAATGAAGGTT+GGG + chr1.4:82668764-82668783 MS.gene71660:CDS 30.0%
TTGCACTTCTTAAATTTCTC+AGG + chr1.4:82667310-82667329 MS.gene71660:intron 30.0%
TTTACACTAAAGGTAAGAAC+AGG - chr1.4:82668987-82669006 None:intergenic 30.0%
! ACTTTGTTTGCTTTGGATTT+AGG + chr1.4:82666055-82666074 MS.gene71660:intron 30.0%
! ATCCCAATTTTCTGTAGTAA+TGG - chr1.4:82669573-82669592 None:intergenic 30.0%
! ATTTGAAAGGGGTACAATTA+GGG - chr1.4:82667740-82667759 None:intergenic 30.0%
! CTGAGTACTGTATTCAAAAT+CGG - chr1.4:82665896-82665915 None:intergenic 30.0%
! GTTTAAAATGTCGTGATGTT+CGG + chr1.4:82668549-82668568 MS.gene71660:CDS 30.0%
! TATTTGAAAGGGGTACAATT+AGG - chr1.4:82667741-82667760 None:intergenic 30.0%
! TGCCTAGTTTGTATTTGAAA+GGG - chr1.4:82667752-82667771 None:intergenic 30.0%
! TGTAGTTATATTAATGGGTG+TGG + chr1.4:82666212-82666231 MS.gene71660:intron 30.0%
! TTGTTGTTGTTGATGAAACA+TGG + chr1.4:82669008-82669027 MS.gene71660:intron 30.0%
!! ATTGGTTCTAGATAATTACC+TGG - chr1.4:82668592-82668611 None:intergenic 30.0%
!!! GCCTTCTTTATTTTGAATGA+AGG + chr1.4:82668948-82668967 MS.gene71660:intron 30.0%
!!! TTGTGTAAAGTTTTGAATGG+AGG + chr1.4:82666470-82666489 MS.gene71660:intron 30.0%
!!! TTTTCTTTGGCTTTTGCTTT+AGG + chr1.4:82668060-82668079 MS.gene71660:intron 30.0%
AAATTGGGATATGAGCTTGA+AGG + chr1.4:82669583-82669602 MS.gene71660:CDS 35.0%
AAGAAATACAGAATGTCGGT+TGG - chr1.4:82668689-82668708 None:intergenic 35.0%
AATCTTCATGATGCTTTGTC+TGG + chr1.4:82666319-82666338 MS.gene71660:CDS 35.0%
AATTGGGATATGAGCTTGAA+GGG + chr1.4:82669584-82669603 MS.gene71660:CDS 35.0%
AATTGTCATGCCAATACACT+TGG - chr1.4:82666398-82666417 None:intergenic 35.0%
ACAGTAACAAACCTTGAAAC+CGG - chr1.4:82667499-82667518 None:intergenic 35.0%
ACCCCTTTCAAATACAAACT+AGG + chr1.4:82667747-82667766 MS.gene71660:intron 35.0%
ACCGGTTAAAGTTTACTCAA+AGG - chr1.4:82667250-82667269 None:intergenic 35.0%
ACGCCATTACTACAGAAAAT+TGG + chr1.4:82669567-82669586 MS.gene71660:CDS 35.0%
ACTTGTTCGTCGTGATTATA+TGG + chr1.4:82668749-82668768 MS.gene71660:CDS 35.0%
AGAAAATGGGTCAGTTATTC+CGG + chr1.4:82667998-82668017 MS.gene71660:intron 35.0%
AGGGACTTTCAAAAAACTCT+CGG - chr1.4:82668147-82668166 None:intergenic 35.0%
ATTGATCAGCTTAAGCGTTT+AGG + chr1.4:82666108-82666127 MS.gene71660:CDS 35.0%
CAAAGTAGGTCAATTATACC+GGG - chr1.4:82667815-82667834 None:intergenic 35.0%
CACTTCTTAAATTTCTCAGG+AGG + chr1.4:82667313-82667332 MS.gene71660:intron 35.0%
CCAAAGTAGGTCAATTATAC+CGG - chr1.4:82667816-82667835 None:intergenic 35.0%
CGCCATTACTACAGAAAATT+GGG + chr1.4:82669568-82669587 MS.gene71660:CDS 35.0%
CGTGATTATATGGCAAATGA+AGG + chr1.4:82668759-82668778 MS.gene71660:CDS 35.0%
GAAGTGCAAAACTTGATAAG+CGG - chr1.4:82667299-82667318 None:intergenic 35.0%
GCAATCATCTCAACAAGTTT+GGG - chr1.4:82665706-82665725 None:intergenic 35.0%
TACAATGAGGGACATGTTAT+TGG - chr1.4:82669415-82669434 None:intergenic 35.0%
TCAAATACAAACTAGGCAGT+AGG + chr1.4:82667754-82667773 MS.gene71660:intron 35.0%
TCACCAAATTAAACCAGAAG+AGG + chr1.4:82668722-82668741 MS.gene71660:CDS 35.0%
TCTGTGTGAAAAACCAAAGT+AGG - chr1.4:82667829-82667848 None:intergenic 35.0%
TGATTCACAAGAAGACATTG+CGG + chr1.4:82667018-82667037 MS.gene71660:intron 35.0%
TGCAATCATCTCAACAAGTT+TGG - chr1.4:82665707-82665726 None:intergenic 35.0%
TTCATTACAACTTTGAGTGC+AGG - chr1.4:82667617-82667636 None:intergenic 35.0%
TTGGTCAAAAGTAGGTCAAT+TGG - chr1.4:82669440-82669459 None:intergenic 35.0%
TTTATGAGATAAGTCGACCA+TGG - chr1.4:82665617-82665636 None:intergenic 35.0%
! ACTGGATTTTTATGGGTAGT+AGG - chr1.4:82666652-82666671 None:intergenic 35.0%
! ATGGTCGACTTATCTCATAA+AGG + chr1.4:82665616-82665635 MS.gene71660:CDS 35.0%
! ATTAGCATGACAGTTTTACC+TGG - chr1.4:82669218-82669237 None:intergenic 35.0%
! ATTCAGCATAAGGAGCATAT+AGG - chr1.4:82667567-82667586 None:intergenic 35.0%
! CTGCCTAGTTTGTATTTGAA+AGG - chr1.4:82667753-82667772 None:intergenic 35.0%
! GCCTAGTTTGTATTTGAAAG+GGG - chr1.4:82667751-82667770 None:intergenic 35.0%
! TGAGTGTAATTGCTGAGTTT+TGG + chr1.4:82669295-82669314 MS.gene71660:intron 35.0%
! TTCGATGACTTTGTTTGCTT+TGG + chr1.4:82666048-82666067 MS.gene71660:intron 35.0%
!! CAGGCTATTAAGATGGATTT+TGG + chr1.4:82666972-82666991 MS.gene71660:intron 35.0%
!! GCCTGATTTGTAGTTTTTCT+TGG - chr1.4:82666957-82666976 None:intergenic 35.0%
!! GGTGTGGTTTATTGTTTTTC+AGG + chr1.4:82666228-82666247 MS.gene71660:intron 35.0%
!! TACAGGGAGAATGGATTATA+TGG + chr1.4:82666899-82666918 MS.gene71660:intron 35.0%
!! TCCAAATGTTGGTGTTGAAA+GGG + chr1.4:82668108-82668127 MS.gene71660:CDS 35.0%
!! TTCCAAATGTTGGTGTTGAA+AGG + chr1.4:82668107-82668126 MS.gene71660:CDS 35.0%
AACTTGTGGACATCATAGCA+AGG + chr1.4:82668396-82668415 MS.gene71660:CDS 40.0%
ACACCAACATTTGGAAGATC+AGG - chr1.4:82668103-82668122 None:intergenic 40.0%
ACTACTTGTCCAGAGCTTAT+GGG + chr1.4:82669111-82669130 MS.gene71660:CDS 40.0%
ACTCTTGTAATACGTGGAAC+TGG + chr1.4:82668199-82668218 MS.gene71660:CDS 40.0%
AGGATAGGCACTAATAAGAG+AGG - chr1.4:82668845-82668864 None:intergenic 40.0%
AGGTCAATTGGAGTACAATG+AGG - chr1.4:82669428-82669447 None:intergenic 40.0%
AGTTCCACGTATTACAAGAG+TGG - chr1.4:82668200-82668219 None:intergenic 40.0%
ATACAAACTAGGCAGTAGGT+TGG + chr1.4:82667758-82667777 MS.gene71660:intron 40.0%
ATGAAACATGGCCATGACAT+TGG + chr1.4:82669020-82669039 MS.gene71660:intron 40.0%
ATGCCTGATCTTCCAAATGT+TGG + chr1.4:82668097-82668116 MS.gene71660:CDS 40.0%
ATTAGCTCGAATGGAAGACT+TGG + chr1.4:82668526-82668545 MS.gene71660:CDS 40.0%
CATAGTGCAACCAAGTGTAT+TGG + chr1.4:82666385-82666404 MS.gene71660:CDS 40.0%
CCAAATTAAACCAGAAGAGG+TGG + chr1.4:82668725-82668744 MS.gene71660:CDS 40.0%
CCATTCTCCCTGTAAGATTT+AGG - chr1.4:82666893-82666912 None:intergenic 40.0%
CCGGTATAATTGACCTACTT+TGG + chr1.4:82667813-82667832 MS.gene71660:intron 40.0%
CCTAAATCTTACAGGGAGAA+TGG + chr1.4:82666890-82666909 MS.gene71660:intron 40.0%
CTCTTGTAATACGTGGAACT+GGG + chr1.4:82668200-82668219 MS.gene71660:CDS 40.0%
CTGCGACAAATGCTTTCTTA+CGG + chr1.4:82667360-82667379 MS.gene71660:CDS 40.0%
CTGTATTCAAAATCGGAGTC+AGG - chr1.4:82665889-82665908 None:intergenic 40.0%
CTTTGACATGACAGCAACAA+CGG - chr1.4:82665806-82665825 None:intergenic 40.0%
GAAAATGGGTCAGTTATTCC+GGG + chr1.4:82667999-82668018 MS.gene71660:intron 40.0%
GAAGGCAAAATATGCACAAC+AGG - chr1.4:82668934-82668953 None:intergenic 40.0%
GCAGTAGACACAAATGTTAC+CGG - chr1.4:82665857-82665876 None:intergenic 40.0%
GGACATGTTATTGGTATCCT+TGG - chr1.4:82669406-82669425 None:intergenic 40.0%
GGAGTTTACAATCTCTGCAA+TGG - chr1.4:82665596-82665615 None:intergenic 40.0%
GGTCAATTGGAGTACAATGA+GGG - chr1.4:82669427-82669446 None:intergenic 40.0%
GGTTGAGAAAGGGAATCTAA+GGG + chr1.4:82668496-82668515 MS.gene71660:CDS 40.0%
GTACAGCAGTTCCATAAACA+TGG - chr1.4:82669161-82669180 None:intergenic 40.0%
GTTCCACGTATTACAAGAGT+GGG - chr1.4:82668199-82668218 None:intergenic 40.0%
TACAGTACTCAGTCTTACAC+TGG + chr1.4:82665904-82665923 MS.gene71660:CDS 40.0%
TACCTCTTGTCTGCACATAA+GGG - chr1.4:82666086-82666105 None:intergenic 40.0%
TCCCTTTCAACACCAACATT+TGG - chr1.4:82668112-82668131 None:intergenic 40.0%
TGCAGAGATTGTAAACTCCA+TGG + chr1.4:82665597-82665616 MS.gene71660:CDS 40.0%
TGTTTATGGAACTGCTGTAC+CGG + chr1.4:82669161-82669180 MS.gene71660:CDS 40.0%
TTAGCTCGAATGGAAGACTT+GGG + chr1.4:82668527-82668546 MS.gene71660:CDS 40.0%
TTCCACGTATTACAAGAGTG+GGG - chr1.4:82668198-82668217 None:intergenic 40.0%
TTCTTACGGTTGTACACGAT+TGG + chr1.4:82667374-82667393 MS.gene71660:CDS 40.0%
TTGTTACGACTGCGAAAATG+TGG + chr1.4:82669081-82669100 MS.gene71660:CDS 40.0%
TTTAGGTCACAGTGTAGACA+AGG + chr1.4:82666125-82666144 MS.gene71660:CDS 40.0%
! ATCACAATGCAGCTTTTCCA+AGG + chr1.4:82669386-82669405 MS.gene71660:intron 40.0%
! CATCAGGTTTAAAAGGCATG+TGG + chr1.4:82668319-82668338 MS.gene71660:intron 40.0%
!! AGGGAGAATGGATTATATGG+AGG + chr1.4:82666902-82666921 MS.gene71660:intron 40.0%
!! ATAGCTGTAATTTCTGGGGT+TGG + chr1.4:82669541-82669560 MS.gene71660:CDS 40.0%
!! CCACCTCTTCTGGTTTAATT+TGG - chr1.4:82668728-82668747 None:intergenic 40.0%
!! CTTTATGAGCTCTGGAAAAC+TGG + chr1.4:82668223-82668242 MS.gene71660:CDS 40.0%
!!! GCTTTGGACTTTTTGGTGTT+TGG + chr1.4:82666496-82666515 MS.gene71660:intron 40.0%
!!! TGTAGCTGATTGTTTTTGCC+TGG + chr1.4:82667464-82667483 MS.gene71660:CDS 40.0%
!!! TTTTGAATGGAGGAGTGCTT+TGG + chr1.4:82666480-82666499 MS.gene71660:intron 40.0%
!!! TTTTTGGTGTTTGGACACGT+GGG + chr1.4:82666505-82666524 MS.gene71660:intron 40.0%
AAACGGGGCCTAAATCTTAC+AGG + chr1.4:82666882-82666901 MS.gene71660:intron 45.0%
AACAACGGCTATTCCAGATG+CGG - chr1.4:82665791-82665810 None:intergenic 45.0%
AACATTTGTGTCTACTGCCC+TGG + chr1.4:82665859-82665878 MS.gene71660:CDS 45.0%
AACCCTTATGTGCAGACAAG+AGG + chr1.4:82666081-82666100 MS.gene71660:CDS 45.0%
AACGGGGCCTAAATCTTACA+GGG + chr1.4:82666883-82666902 MS.gene71660:intron 45.0%
AAGATATACTACCTCCGTCC+CGG + chr1.4:82667794-82667813 MS.gene71660:intron 45.0%
AAGTAATCACGGTAATCCGC+CGG - chr1.4:82666292-82666311 None:intergenic 45.0%
AATGGTGGCAGAGGCAAAAA+AGG + chr1.4:82665504-82665523 MS.gene71660:CDS 45.0%
ACTCTATAAACACGCGTCCA+TGG - chr1.4:82668440-82668459 None:intergenic 45.0%
ACTGCCGCCATGATATAAAC+TGG + chr1.4:82667155-82667174 MS.gene71660:intron 45.0%
AGACAGCACAACCAATGTCA+TGG - chr1.4:82669034-82669053 None:intergenic 45.0%
AGGAGGCCAGATTATTGTCT+TGG + chr1.4:82667330-82667349 MS.gene71660:intron 45.0%
ATGATGTCCACAAGTTGCTC+AGG - chr1.4:82668392-82668411 None:intergenic 45.0%
CAACATCCTCGTAAGTGCTT+TGG - chr1.4:82667410-82667429 None:intergenic 45.0%
CACGTGCTTCTTCTTCACTA+AGG - chr1.4:82665567-82665586 None:intergenic 45.0%
CACTACTTGTCCAGAGCTTA+TGG + chr1.4:82669110-82669129 MS.gene71660:CDS 45.0%
CATAGCAAGGATCCTTGCAA+TGG + chr1.4:82668409-82668428 MS.gene71660:CDS 45.0%
CGCGTGTTTATAGAGTTCAG+CGG + chr1.4:82668444-82668463 MS.gene71660:CDS 45.0%
CTACCTCTTGTCTGCACATA+AGG - chr1.4:82666087-82666106 None:intergenic 45.0%
CTTATGTGCAGACAAGAGGT+AGG + chr1.4:82666085-82666104 MS.gene71660:CDS 45.0%
CTTGAGCAGGATATCCTTGT+TGG + chr1.4:82669057-82669076 MS.gene71660:intron 45.0%
GAACACTTACCCATAAGCTC+TGG - chr1.4:82669123-82669142 None:intergenic 45.0%
GCAGTCGTAACAAACCAACA+AGG - chr1.4:82669074-82669093 None:intergenic 45.0%
GCGTGTTTATAGAGTTCAGC+GGG + chr1.4:82668445-82668464 MS.gene71660:CDS 45.0%
GGAGGCCAGATTATTGTCTT+GGG + chr1.4:82667331-82667350 MS.gene71660:intron 45.0%
GGAGTTAGCATTAGCTCGAA+TGG + chr1.4:82668517-82668536 MS.gene71660:CDS 45.0%
GGGGAGAAGACTTGTAGTAA+GGG + chr1.4:82666525-82666544 MS.gene71660:intron 45.0%
GGGTTGAGAAAGGGAATCTA+AGG + chr1.4:82668495-82668514 MS.gene71660:CDS 45.0%
GGTTGTACACGATTGGAGAT+TGG + chr1.4:82667381-82667400 MS.gene71660:CDS 45.0%
GTAGACACAAATGTTACCGG+TGG - chr1.4:82665854-82665873 None:intergenic 45.0%
GTAGGTCAATTATACCGGGA+CGG - chr1.4:82667811-82667830 None:intergenic 45.0%
GTCACAGTGTAGACAAGGTT+TGG + chr1.4:82666130-82666149 MS.gene71660:intron 45.0%
GTCATATGAAGATACACGGC+AGG + chr1.4:82668797-82668816 MS.gene71660:CDS 45.0%
GTGACAACGTGCAGATTGAT+AGG - chr1.4:82667522-82667541 None:intergenic 45.0%
GTTCGTGAGCTCCATGTTTA+TGG + chr1.4:82669147-82669166 MS.gene71660:CDS 45.0%
GTTGCTCGTGACACTAATAG+AGG + chr1.4:82667426-82667445 MS.gene71660:CDS 45.0%
TAAGAGAGGCTGAGGAAAGA+AGG - chr1.4:82668831-82668850 None:intergenic 45.0%
TACCCCACTCTTGTAATACG+TGG + chr1.4:82668193-82668212 MS.gene71660:CDS 45.0%
TGAGGCCCAAGACAATAATC+TGG - chr1.4:82667339-82667358 None:intergenic 45.0%
TGGAACTTTCATGTCCCTTC+CGG + chr1.4:82666270-82666289 MS.gene71660:CDS 45.0%
TGGGGAGAAGACTTGTAGTA+AGG + chr1.4:82666524-82666543 MS.gene71660:intron 45.0%
TTATCCACCTGAGCAACTTG+TGG + chr1.4:82668382-82668401 MS.gene71660:CDS 45.0%
TTCTGACAAGCTACAACACC+AGG + chr1.4:82669197-82669216 MS.gene71660:CDS 45.0%
! AAGCCCATCTGCTCTAAACA+AGG - chr1.4:82668167-82668186 None:intergenic 45.0%
! AGCCCATCTGCTCTAAACAA+GGG - chr1.4:82668166-82668185 None:intergenic 45.0%
! AGTCCCTTGTTTAGAGCAGA+TGG + chr1.4:82668160-82668179 MS.gene71660:CDS 45.0%
! GCTCTGGACAAGTAGTGTTA+CGG - chr1.4:82669107-82669126 None:intergenic 45.0%
! GTCCCTTGTTTAGAGCAGAT+GGG + chr1.4:82668161-82668180 MS.gene71660:CDS 45.0%
! GTGTGAGTCTAGTTTGTAGC+TGG + chr1.4:82668900-82668919 MS.gene71660:intron 45.0%
! TTTTGCCTGGCTAAAGATGC+CGG + chr1.4:82667477-82667496 MS.gene71660:CDS 45.0%
!! CGTAAGAAAGCATTTGTCGC+AGG - chr1.4:82667362-82667381 None:intergenic 45.0%
!! GAGCGTTGAGATCAACTTTG+TGG - chr1.4:82665642-82665661 None:intergenic 45.0%
!! TGTTGGTGTTGAAAGGGACA+TGG + chr1.4:82668114-82668133 MS.gene71660:CDS 45.0%
!!! CTTTTTGGTGTTTGGACACG+TGG + chr1.4:82666504-82666523 MS.gene71660:intron 45.0%
!!! GAGGAGTGCTTTGGACTTTT+TGG + chr1.4:82666489-82666508 MS.gene71660:intron 45.0%
!!! TTTTGGTGTTTGGACACGTG+GGG + chr1.4:82666506-82666525 MS.gene71660:intron 45.0%
AAATAGTACTCCCTCCGTCC+CGG - chr1.4:82668020-82668039 None:intergenic 50.0%
AACTTTCATGTCCCTTCCGG+CGG + chr1.4:82666273-82666292 MS.gene71660:CDS 50.0%
ATGGGTCAGTTATTCCGGGA+CGG + chr1.4:82668003-82668022 MS.gene71660:intron 50.0%
ATGTCCACAAGTTGCTCAGG+TGG - chr1.4:82668389-82668408 None:intergenic 50.0%
ATTCCCTTTCTCAACCCCAG+AGG - chr1.4:82668492-82668511 None:intergenic 50.0%
ATTTGTGTCTACTGCCCTGG+CGG + chr1.4:82665862-82665881 MS.gene71660:CDS 50.0%
CACCTCTGCCAATGTAGAAG+AGG + chr1.4:82666345-82666364 MS.gene71660:CDS 50.0%
CACGTGAGAGGCCATACTTA+CGG - chr1.4:82665681-82665700 None:intergenic 50.0%
CGAACAAGTTCCACCTCTTC+TGG - chr1.4:82668738-82668757 None:intergenic 50.0%
CGAATTGCACGCATACTGGT+AGG - chr1.4:82665937-82665956 None:intergenic 50.0%
CTATAAACACGCGTCCATGG+AGG - chr1.4:82668437-82668456 None:intergenic 50.0%
CTCTGCCAATGTAGAAGAGG+CGG + chr1.4:82666348-82666367 MS.gene71660:CDS 50.0%
CTTCTTCTTCACTAAGGCCG+TGG - chr1.4:82665561-82665580 None:intergenic 50.0%
GACACAAATGTTACCGGTGG+TGG - chr1.4:82665851-82665870 None:intergenic 50.0%
GCGGGATATTCCAATGCCTT+TGG + chr1.4:82668463-82668482 MS.gene71660:CDS 50.0%
GGCACTAATAAGAGAGGCTG+AGG - chr1.4:82668839-82668858 None:intergenic 50.0%
GGGAAGAAGAACCTCTCGTT+CGG - chr1.4:82665743-82665762 None:intergenic 50.0%
GTATGCGTGCAATTCGAGCA+AGG + chr1.4:82665941-82665960 MS.gene71660:CDS 50.0%
TACCTGGATTCCAGCTTCTC+TGG - chr1.4:82668576-82668595 None:intergenic 50.0%
TCCTTGCAATGGTACCTCCA+TGG + chr1.4:82668420-82668439 MS.gene71660:CDS 50.0%
TGAAACCGGCATCTTTAGCC+AGG - chr1.4:82667485-82667504 None:intergenic 50.0%
TGCTCGAATTGCACGCATAC+TGG - chr1.4:82665941-82665960 None:intergenic 50.0%
TGTGCTGTCTTCTCTTGAGC+AGG + chr1.4:82669044-82669063 MS.gene71660:intron 50.0%
TTTACCAGACTCCGAACGAG+AGG + chr1.4:82665729-82665748 MS.gene71660:CDS 50.0%
! AATGCCTTTGGTGACCTCTG+GGG + chr1.4:82668475-82668494 MS.gene71660:CDS 50.0%
! CAATGCCTTTGGTGACCTCT+GGG + chr1.4:82668474-82668493 MS.gene71660:CDS 50.0%
! GAACTGGGCTTTATGAGCTC+TGG + chr1.4:82668215-82668234 MS.gene71660:CDS 50.0%
! GTCTAGTTTGTAGCTGGCAC+TGG + chr1.4:82668906-82668925 MS.gene71660:intron 50.0%
! TATTCCAGATGCGGTTCGGA+CGG - chr1.4:82665782-82665801 None:intergenic 50.0%
! TGGAGTCCAAAGCACTTACG+AGG + chr1.4:82667401-82667420 MS.gene71660:CDS 50.0%
!! AAAGGAGGCTTTGAAGGCCA+CGG + chr1.4:82665541-82665560 MS.gene71660:CDS 50.0%
!! ATGAGCTCTGGAAAACTGGC+AGG + chr1.4:82668227-82668246 MS.gene71660:CDS 50.0%
!! CAAAAAAGGCACCACGTCCT+GGG + chr1.4:82665518-82665537 MS.gene71660:CDS 50.0%
!! GAAAGCATTTGTCGCAGGTG+AGG - chr1.4:82667357-82667376 None:intergenic 50.0%
!! GAACTGCTGTACCGGTTCAT+GGG + chr1.4:82669169-82669188 MS.gene71660:CDS 50.0%
!! GGCTAAAGATGCCGGTTTCA+AGG + chr1.4:82667485-82667504 MS.gene71660:CDS 50.0%
!! TCCATGGAGGTACCATTGCA+AGG - chr1.4:82668424-82668443 None:intergenic 50.0%
!! TGACCTCTGGGGTTGAGAAA+GGG + chr1.4:82668486-82668505 MS.gene71660:CDS 50.0%
AATCACGGTAATCCGCCGGA+AGG - chr1.4:82666288-82666307 None:intergenic 55.0%
AGAACCTCTCGTTCGGAGTC+TGG - chr1.4:82665736-82665755 None:intergenic 55.0%
ATCACGGTAATCCGCCGGAA+GGG - chr1.4:82666287-82666306 None:intergenic 55.0%
CAAGTTTGGGTGCACGTGAG+AGG - chr1.4:82665693-82665712 None:intergenic 55.0%
CCTTCAAAGCCTCCTTTCCC+AGG - chr1.4:82665538-82665557 None:intergenic 55.0%
CGCCTCTTCTACATTGGCAG+AGG - chr1.4:82666350-82666369 None:intergenic 55.0%
CGGCTATTCCAGATGCGGTT+CGG - chr1.4:82665786-82665805 None:intergenic 55.0%
CGTCACCGCCTCTTCTACAT+TGG - chr1.4:82666356-82666375 None:intergenic 55.0%
GACCAGAGAAGCTGGAATCC+AGG + chr1.4:82668571-82668590 MS.gene71660:CDS 55.0%
GATGTTCGGACCAGAGAAGC+TGG + chr1.4:82668563-82668582 MS.gene71660:CDS 55.0%
GCAATGTGAGGGCAACGATG+AGG - chr1.4:82665829-82665848 None:intergenic 55.0%
GCGTGCAATTCGAGCAAGGT+AGG + chr1.4:82665945-82665964 MS.gene71660:intron 55.0%
GGTCAATTATACCGGGACGG+AGG - chr1.4:82667808-82667827 None:intergenic 55.0%
GTCAGTTATTCCGGGACGGA+GGG + chr1.4:82668007-82668026 MS.gene71660:intron 55.0%
TCAACCCCAGAGGTCACCAA+AGG - chr1.4:82668482-82668501 None:intergenic 55.0%
TCAGAATCCCGCCCATGAAC+CGG - chr1.4:82669183-82669202 None:intergenic 55.0%
TCTGCTGCGTGCCGTAAGTA+TGG + chr1.4:82665667-82665686 MS.gene71660:CDS 55.0%
! ATTCCAGATGCGGTTCGGAC+GGG - chr1.4:82665781-82665800 None:intergenic 55.0%
! CCAATGCCTTTGGTGACCTC+TGG + chr1.4:82668473-82668492 MS.gene71660:CDS 55.0%
! CCAGAGGTCACCAAAGGCAT+TGG - chr1.4:82668476-82668495 None:intergenic 55.0%
! CCTGGGAAAGGAGGCTTTGA+AGG + chr1.4:82665535-82665554 MS.gene71660:CDS 55.0%
! TACCGGTGGTGGCAATGTGA+GGG - chr1.4:82665840-82665859 None:intergenic 55.0%
! TTACCGGTGGTGGCAATGTG+AGG - chr1.4:82665841-82665860 None:intergenic 55.0%
!! ACGGGTTTGGCTCGGAGTTT+GGG - chr1.4:82665763-82665782 None:intergenic 55.0%
!! GCAAAAAAGGCACCACGTCC+TGG + chr1.4:82665517-82665536 MS.gene71660:CDS 55.0%
!! GGAACTGCTGTACCGGTTCA+TGG + chr1.4:82669168-82669187 MS.gene71660:CDS 55.0%
!! GTGACCTCTGGGGTTGAGAA+AGG + chr1.4:82668485-82668504 MS.gene71660:CDS 55.0%
AAACCCGTCCGAACCGCATC+TGG + chr1.4:82665775-82665794 MS.gene71660:CDS 60.0%
AAATCGGAGTCAGGACCGCC+AGG - chr1.4:82665880-82665899 None:intergenic 60.0%
AAGCCTCCTTTCCCAGGACG+TGG - chr1.4:82665532-82665551 None:intergenic 60.0%
AATCGGAGTCAGGACCGCCA+GGG - chr1.4:82665879-82665898 None:intergenic 60.0%
GGCAACTGCAATGGTGGCAG+AGG + chr1.4:82665495-82665514 MS.gene71660:CDS 60.0%
GGTCAGTTATTCCGGGACGG+AGG + chr1.4:82668006-82668025 MS.gene71660:intron 60.0%
TGCCCTCACATTGCCACCAC+CGG + chr1.4:82665835-82665854 MS.gene71660:CDS 60.0%
! AAGGCACCACGTCCTGGGAA+AGG + chr1.4:82665523-82665542 MS.gene71660:CDS 60.0%
! AGATGCGGTTCGGACGGGTT+TGG - chr1.4:82665776-82665795 None:intergenic 60.0%
!! CTGCTGTACCGGTTCATGGG+CGG + chr1.4:82669172-82669191 MS.gene71660:CDS 60.0%
!! GACGGGTTTGGCTCGGAGTT+TGG - chr1.4:82665764-82665783 None:intergenic 60.0%
!! TGCTGTACCGGTTCATGGGC+GGG + chr1.4:82669173-82669192 MS.gene71660:CDS 60.0%
GCACCACGTCCTGGGAAAGG+AGG + chr1.4:82665526-82665545 MS.gene71660:CDS 65.0%
! CGGTTCGGACGGGTTTGGCT+CGG - chr1.4:82665771-82665790 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 82665493 82669633 82665493 ID=MS.gene71660
chr1.4 mRNA 82665493 82669633 82665493 ID=MS.gene71660.t1;Parent=MS.gene71660
chr1.4 exon 82665493 82665962 82665493 ID=MS.gene71660.t1.exon1;Parent=MS.gene71660.t1
chr1.4 CDS 82665493 82665962 82665493 ID=cds.MS.gene71660.t1;Parent=MS.gene71660.t1
chr1.4 exon 82666077 82666146 82666077 ID=MS.gene71660.t1.exon2;Parent=MS.gene71660.t1
chr1.4 CDS 82666077 82666146 82666077 ID=cds.MS.gene71660.t1;Parent=MS.gene71660.t1
chr1.4 exon 82666250 82666422 82666250 ID=MS.gene71660.t1.exon3;Parent=MS.gene71660.t1
chr1.4 CDS 82666250 82666422 82666250 ID=cds.MS.gene71660.t1;Parent=MS.gene71660.t1
chr1.4 exon 82667332 82667506 82667332 ID=MS.gene71660.t1.exon4;Parent=MS.gene71660.t1
chr1.4 CDS 82667332 82667506 82667332 ID=cds.MS.gene71660.t1;Parent=MS.gene71660.t1
chr1.4 exon 82668082 82668248 82668082 ID=MS.gene71660.t1.exon5;Parent=MS.gene71660.t1
chr1.4 CDS 82668082 82668248 82668082 ID=cds.MS.gene71660.t1;Parent=MS.gene71660.t1
chr1.4 exon 82668373 82668592 82668373 ID=MS.gene71660.t1.exon6;Parent=MS.gene71660.t1
chr1.4 CDS 82668373 82668592 82668373 ID=cds.MS.gene71660.t1;Parent=MS.gene71660.t1
chr1.4 exon 82668714 82668818 82668714 ID=MS.gene71660.t1.exon7;Parent=MS.gene71660.t1
chr1.4 CDS 82668714 82668818 82668714 ID=cds.MS.gene71660.t1;Parent=MS.gene71660.t1
chr1.4 exon 82669066 82669218 82669066 ID=MS.gene71660.t1.exon8;Parent=MS.gene71660.t1
chr1.4 CDS 82669066 82669218 82669066 ID=cds.MS.gene71660.t1;Parent=MS.gene71660.t1
chr1.4 exon 82669475 82669633 82669475 ID=MS.gene71660.t1.exon9;Parent=MS.gene71660.t1
chr1.4 CDS 82669475 82669633 82669475 ID=cds.MS.gene71660.t1;Parent=MS.gene71660.t1
Gene Sequence

>MS.gene71660

ATGGCAACTGCAATGGTGGCAGAGGCAAAAAAGGCACCACGTCCTGGGAAAGGAGGCTTTGAAGGCCACGGCCTTAGTGAAGAAGAAGCACGTGTTCGAGCCATTGCAGAGATTGTAAACTCCATGGTCGACTTATCTCATAAAGGCCACAAAGTTGATCTCAACGCTCTCAAGTCTGCTGCGTGCCGTAAGTATGGCCTCTCACGTGCACCCAAACTTGTTGAGATGATTGCAGCTTTACCAGACTCCGAACGAGAGGTTCTTCTTCCCAAACTCCGAGCCAAACCCGTCCGAACCGCATCTGGAATAGCCGTTGTTGCTGTCATGTCAAAGCCTCATCGTTGCCCTCACATTGCCACCACCGGTAACATTTGTGTCTACTGCCCTGGCGGTCCTGACTCCGATTTTGAATACAGTACTCAGTCTTACACTGGTTATGAACCTACCAGTATGCGTGCAATTCGAGCAAGGTAGGTTCATTTTCATTTTGTTACAGTCATTAAAATGTAAATTGTTAAATGAAATTATCCTTTAAGTAAAATAGAACACATCTAATTCGATGACTTTGTTTGCTTTGGATTTAGGTATAACCCTTATGTGCAGACAAGAGGTAGGATTGATCAGCTTAAGCGTTTAGGTCACAGTGTAGACAAGGTTTGGAGCTCTACTGTTGTTTGTTGAGTTATTCAAGTGCATGAAATATACATGCAGATGTATCATGTAGTTATATTAATGGGTGTGGTTTATTGTTTTTCAGGTTGAGTTTATATTAATGGGTGGAACTTTCATGTCCCTTCCGGCGGATTACCGTGATTACTTTATAAGGAATCTTCATGATGCTTTGTCTGGACACACCTCTGCCAATGTAGAAGAGGCGGTGACGTACTCTGAGCATAGTGCAACCAAGTGTATTGGCATGACAATTGAAACGTGAGTTGCCTGCCATTTAATTATTTGCAAGTTGAATTTTGAGTCTTTTGTGTAAAGTTTTGAATGGAGGAGTGCTTTGGACTTTTTGGTGTTTGGACACGTGGGGAGAAGACTTGTAGTAAGGGTGCGTTTGTTTCAGCCTTAAAAAAAAAATAGATTTTGTGTTAAAAGAATCTAGAGATTTTTTTTAGAGATTTTAAAAAAAATCTGAAGTTATTTTTGTTTGCCTACTACCCATAAAAATCCAGTTTTTTTTAAAAATGAAAAAAAGAGTTTTAACTTGTACATGTGTTACCTCCTTGTTTTTGAATAAAAATAGATTTTAAGAAAAGCTAATCCTAATAGCTTTTCATTTTAGGGTCAAAATAGATTTTTTTTTTATAAAATGATTTTTCTAAAAATTCTAAACAAACACTTAAAAATGAAAAAAGTGATTTTTTTTCTAAAAAAATCTGAAACAAACGGGGCCTAAATCTTACAGGGAGAATGGATTATATGGAGGTTAATTAAATAGTTAGAACTAGCGAGAGACCAAGAAAAACTACAAATCAGGCTATTAAGATGGATTTTGGTTTAAATGATTTGTCACTAGACATGATTCACAAGAAGACATTGCGGTGCCATTTGATTCATGTAACTAAACTCCCCTTGTGAAAGAAGTTTTTTTTCTTTTGTTGTAATAGAGATAATGAAACAAGATATACTACTTGTAATAAATTTGCTGTTATGACAACTGCCGCCATGATATAAACTGGTTTAGTTATGATTTTCTAGGGTTTTGTGCATTTCGTTTTTGAGCATATCAATGATTATATTCGTGGAAACCTTTGAGTAAACTTTAACCGGTAATAGTTAATTTAACACATCAATTCACCGCTTATCAAGTTTTGCACTTCTTAAATTTCTCAGGAGGCCAGATTATTGTCTTGGGCCTCACCTGCGACAAATGCTTTCTTACGGTTGTACACGATTGGAGATTGGAGTCCAAAGCACTTACGAGGATGTTGCTCGTGACACTAATAGAGGACATACTGTTGCTGCTGTAGCTGATTGTTTTTGCCTGGCTAAAGATGCCGGTTTCAAGGTTTGTTACTGTCCTATCAATCTGCACGTTGTCACAGCTGTCCTGTCAAACTATTCTCCTATATGCTCCTTATGCTGAATGTGTTTAAAAATTGATATATACATATTCCTGCACTCAAAGTTGTAATGAACTTAATGACATTGTGTGCTGTCTCGTTTTAAATAGATTCATTGGTATAATATTAATAAGCAACTTTCTATAGGCATATTACTTTCTAGTTGTTTGGATTTCCCTAATTGTACCCCTTTCAAATACAAACTAGGCAGTAGGTTGGTCATGAGAGTTGAAAGATATACTACCTCCGTCCCGGTATAATTGACCTACTTTGGTTTTTCACACAGATTAAGAAAAGTGTATAAATAAAGGAAAAAGTAGAATATATTGTATTGGGAATGATAAAAGTAGTATTATTTAGTGTTATATTGTATTGGGAATGATGAAAGTTGTATTGAAAATTGAAATGAGTCAGTTATTTTGGGACACTTTTTTTTAGAAAATGGGTCAGTTATTCCGGGACGGAGGGAGTACTATTTGTTCTCATTTTATGTTTTTTTTTTCTTTGGCTTTTGCTTTAGGTAGTTGCTCACATGATGCCTGATCTTCCAAATGTTGGTGTTGAAAGGGACATGGAAAGTTTCCGAGAGTTTTTTGAAAGTCCCTTGTTTAGAGCAGATGGGCTTAAAATTTACCCCACTCTTGTAATACGTGGAACTGGGCTTTATGAGCTCTGGAAAACTGGCAGGTACCTATCTAATGTGATGTGTTCTTTCAAATGCTTCTTTCTCAAGCTCTTTAGTTTCTATCTCATTATTCATCAGGTTTAAAAGGCATGTGGAAAGTCAATTTGTTTGTTAACATCATTTTAGGTATAGAAATTATCCACCTGAGCAACTTGTGGACATCATAGCAAGGATCCTTGCAATGGTACCTCCATGGACGCGTGTTTATAGAGTTCAGCGGGATATTCCAATGCCTTTGGTGACCTCTGGGGTTGAGAAAGGGAATCTAAGGGAGTTAGCATTAGCTCGAATGGAAGACTTGGGTTTAAAATGTCGTGATGTTCGGACCAGAGAAGCTGGAATCCAGGTAATTATCTAGAACCAATCTCGTCTTGAAATTTAATTTAACAAGGATTTGTAAATCTTTACACACTTTGTTTACTAGTATTATTTTGGAGCACCAACCGACATTCTGTATTTCTTTGTAGGATATTCATCACCAAATTAAACCAGAAGAGGTGGAACTTGTTCGTCGTGATTATATGGCAAATGAAGGTTGGGAAACATTTTTGTCATATGAAGATACACGGCAGGTGATTTTACCTTCTTTCCTCAGCCTCTCTTATTAGTGCCTATCCTTTTGTCTATCATCATTTTTTACTTTGACTTGTAACGTGTGAGTCTAGTTTGTAGCTGGCACTGGTTCCTGTTGTGCATATTTTGCCTTCTTTATTTTGAATGAAGGGGACATCTCTTAACCTGTTCTTACCTTTAGTGTAAATTTGTTGTTGTTGATGAAACATGGCCATGACATTGGTTGTGCTGTCTTCTCTTGAGCAGGATATCCTTGTTGGTTTGTTACGACTGCGAAAATGTGGCCGTAACACTACTTGTCCAGAGCTTATGGGTAAGTGTTCTATTGTTCGTGAGCTCCATGTTTATGGAACTGCTGTACCGGTTCATGGGCGGGATTCTGACAAGCTACAACACCAGGTAAAACTGTCATGCTAATACATAGATGACATGTGATATCATTACGAATATTCACATGTTCTTATTGGATACTATCTGAGTGTAATTGCTGAGTTTTGGTTTTGAACTGTATATCAAATTTTTTAGCCATGTATAATATCCAAGAAGATACATATGGATATTCACAAATCACAATGCAGCTTTTCCAAGGATACCAATAACATGTCCCTCATTGTACTCCAATTGACCTACTTTTGACCAAAATTATTGTTAACAGGGTTATGGTACACTTCTTATGGAGGAGGCTGAGCGGATTGCTTCGAAAGAACACAGATCAACTAAGATAGCTGTAATTTCTGGGGTTGGCACACGCCATTACTACAGAAAATTGGGATATGAGCTTGAAGGGCCTTACATGATGAAATACCTAATGTAA

Protein sequence

>MS.gene71660.t1

MATAMVAEAKKAPRPGKGGFEGHGLSEEEARVRAIAEIVNSMVDLSHKGHKVDLNALKSAACRKYGLSRAPKLVEMIAALPDSEREVLLPKLRAKPVRTASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQTRGRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHSATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDMESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIIARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMEDLGLKCRDVRTREAGIQDIHHQIKPEEVELVRRDYMANEGWETFLSYEDTRQDILVGLLRLRKCGRNTTCPELMGKCSIVRELHVYGTAVPVHGRDSDKLQHQGYGTLLMEEAERIASKEHRSTKIAVISGVGTRHYYRKLGYELEGPYMMKYLM