AlfalfaGEDB | MS.gene09540

M. sativa cultivar XinJiangDaYe / MS.gene09540

KEGG: K10436
GO: GO:0003674 GO:0005488 GO:0005515 GO:0008017 GO:0008092 GO:0015631
PFAM: PF00307.34 PF03271.20

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09540.t1	XP_003611667.2	95.5	334	13	2	1	333	1	333	8.60E-162	579.7

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09540.t1	Q9FGQ6	58.9	338	122	4	1	332	1	327	7.5e-90	332.0

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09540.t1	G7K588	95.5	334	13	2	1	333	1	333	6.2e-162	579.7

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049397	MS.gene09540	0.848829	4.78E-60	-1.69E-46
MS.gene049596	MS.gene09540	0.806868	6.68E-50	-1.69E-46
MS.gene049622	MS.gene09540	0.849272	3.60E-60	-1.69E-46
MS.gene049989	MS.gene09540	0.88865	4.89E-73	-1.69E-46
MS.gene050297	MS.gene09540	0.907706	3.79E-81	-1.69E-46
MS.gene051094	MS.gene09540	0.824657	7.17E-54	-1.69E-46
MS.gene05124	MS.gene09540	0.810194	1.30E-50	-1.69E-46
MS.gene051263	MS.gene09540	0.835359	1.76E-56	-1.69E-46
MS.gene051629	MS.gene09540	0.853068	3.05E-61	-1.69E-46
MS.gene051742	MS.gene09540	0.832024	1.20E-55	-1.69E-46
MS.gene051816	MS.gene09540	0.824039	1.00E-53	-1.69E-46
MS.gene051955	MS.gene09540	0.883779	3.36E-71	-1.69E-46
MS.gene052143	MS.gene09540	0.860431	2.08E-63	-1.69E-46
MS.gene052308	MS.gene09540	0.86453	1.14E-64	-1.69E-46
MS.gene052367	MS.gene09540	0.928105	4.62E-92	-1.69E-46
MS.gene053173	MS.gene09540	0.849047	4.15E-60	-1.69E-46
MS.gene053348	MS.gene09540	0.839996	1.13E-57	-1.69E-46
MS.gene053416	MS.gene09540	0.87338	1.54E-67	-1.69E-46
MS.gene053417	MS.gene09540	0.874644	5.75E-68	-1.69E-46
MS.gene05369	MS.gene09540	0.852184	5.45E-61	-1.69E-46
MS.gene054551	MS.gene09540	0.855904	4.61E-62	-1.69E-46
MS.gene054552	MS.gene09540	0.819	1.46E-52	-1.69E-46
MS.gene054593	MS.gene09540	0.852995	3.20E-61	-1.69E-46
MS.gene054643	MS.gene09540	0.829173	5.97E-55	-1.69E-46
MS.gene054885	MS.gene09540	0.800357	1.50E-48	-1.69E-46
MS.gene055308	MS.gene09540	0.88322	5.39E-71	-1.69E-46
MS.gene055411	MS.gene09540	0.838955	2.11E-57	-1.69E-46
MS.gene055578	MS.gene09540	0.895926	6.02E-76	-1.69E-46
MS.gene055579	MS.gene09540	0.849112	3.99E-60	-1.69E-46
MS.gene055957	MS.gene09540	0.909485	5.41E-82	-1.69E-46
MS.gene056041	MS.gene09540	0.933907	9.16E-96	-1.69E-46
MS.gene056042	MS.gene09540	0.854172	1.47E-61	-1.69E-46
MS.gene056335	MS.gene09540	0.802098	6.59E-49	-1.69E-46
MS.gene05640	MS.gene09540	0.865767	4.65E-65	-1.69E-46
MS.gene056526	MS.gene09540	0.860063	2.68E-63	-1.69E-46
MS.gene056528	MS.gene09540	0.821035	5.00E-53	-1.69E-46
MS.gene057358	MS.gene09540	0.815391	9.47E-52	-1.69E-46
MS.gene057359	MS.gene09540	0.804513	2.08E-49	-1.69E-46
MS.gene057458	MS.gene09540	0.868775	5.08E-66	-1.69E-46
MS.gene057483	MS.gene09540	0.826181	3.12E-54	-1.69E-46
MS.gene058128	MS.gene09540	0.81103	8.58E-51	-1.69E-46
MS.gene058196	MS.gene09540	0.870149	1.82E-66	-1.69E-46
MS.gene058197	MS.gene09540	0.847649	1.01E-59	-1.69E-46
MS.gene058198	MS.gene09540	0.849653	2.82E-60	-1.69E-46
MS.gene058818	MS.gene09540	0.842688	2.22E-58	-1.69E-46
MS.gene058827	MS.gene09540	0.832627	8.49E-56	-1.69E-46
MS.gene058828	MS.gene09540	0.804529	2.07E-49	-1.69E-46
MS.gene058853	MS.gene09540	0.853217	2.76E-61	-1.69E-46
MS.gene059300	MS.gene09540	0.870412	1.49E-66	-1.69E-46
MS.gene059553	MS.gene09540	0.84706	1.47E-59	-1.69E-46
MS.gene060473	MS.gene09540	0.92701	2.13E-91	-1.69E-46
MS.gene060565	MS.gene09540	0.92282	5.97E-89	-1.69E-46
MS.gene06057	MS.gene09540	0.870846	1.07E-66	-1.69E-46
MS.gene06064	MS.gene09540	0.817107	3.91E-52	-1.69E-46
MS.gene060825	MS.gene09540	0.82432	8.60E-54	-1.69E-46
MS.gene06093	MS.gene09540	0.854626	1.09E-61	-1.69E-46
MS.gene061099	MS.gene09540	0.901512	2.49E-78	-1.69E-46
MS.gene061260	MS.gene09540	0.92666	3.46E-91	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene69947	MS.gene09540	PPI
MS.gene003428	MS.gene09540	PPI
MS.gene00146	MS.gene09540	PPI
MS.gene51515	MS.gene09540	PPI
MS.gene55980	MS.gene09540	PPI
MS.gene045358	MS.gene09540	PPI
MS.gene67725	MS.gene09540	PPI
MS.gene041599	MS.gene09540	PPI
MS.gene43992	MS.gene09540	PPI
MS.gene067039	MS.gene09540	PPI
MS.gene79893	MS.gene09540	PPI
MS.gene035363	MS.gene09540	PPI
MS.gene058245	MS.gene09540	PPI
MS.gene033134	MS.gene09540	PPI
MS.gene045765	MS.gene09540	PPI
MS.gene09540	MS.gene041598	PPI
MS.gene09540	MS.gene43369	PPI
MS.gene066552	MS.gene09540	PPI
MS.gene045227	MS.gene09540	PPI
MS.gene41343	MS.gene09540	PPI
MS.gene029211	MS.gene09540	PPI
MS.gene75567	MS.gene09540	PPI
MS.gene000365	MS.gene09540	PPI
MS.gene78156	MS.gene09540	PPI
MS.gene58445	MS.gene09540	PPI
MS.gene005125	MS.gene09540	PPI
MS.gene071261	MS.gene09540	PPI
MS.gene058013	MS.gene09540	PPI
MS.gene93131	MS.gene09540	PPI
MS.gene03589	MS.gene09540	PPI
MS.gene79126	MS.gene09540	PPI
MS.gene67743	MS.gene09540	PPI
MS.gene09540	MS.gene77531	PPI
MS.gene037362	MS.gene09540	PPI
MS.gene75146	MS.gene09540	PPI
MS.gene037409	MS.gene09540	PPI
MS.gene009372	MS.gene09540	PPI
MS.gene77822	MS.gene09540	PPI
MS.gene09540	MS.gene75670	PPI
MS.gene09540	MS.gene018958	PPI
MS.gene53708	MS.gene09540	PPI
MS.gene71660	MS.gene09540	PPI
MS.gene76850	MS.gene09540	PPI
MS.gene029611	MS.gene09540	PPI
MS.gene035362	MS.gene09540	PPI
MS.gene50990	MS.gene09540	PPI
MS.gene09540	MS.gene90863	PPI
MS.gene78481	MS.gene09540	PPI
MS.gene060311	MS.gene09540	PPI
MS.gene066551	MS.gene09540	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09540.t1	MTR_5g016520	96.707	334	9	2	1	333	1	333	0.0	668
MS.gene09540.t1	MTR_0036s0210	58.657	283	94	5	1	276	1	267	1.95e-114	333
MS.gene09540.t1	MTR_4g108330	57.193	285	94	5	1	276	1	266	3.12e-109	320
MS.gene09540.t1	MTR_2072s0010	73.077	52	14	0	37	88	1	52	3.35e-20	82.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09540.t1	AT5G67270	61.494	348	97	10	1	332	1	327	6.06e-142	404
MS.gene09540.t1	AT3G47690	54.915	295	110	5	1	291	1	276	7.85e-112	326
MS.gene09540.t1	AT5G62500	57.194	278	97	5	1	272	1	262	4.63e-108	317

Find 76 sgRNAs with CRISPR-Local

Find 121 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TACTGTGATTCTGTTAATTC+TGG	0.239455	5.2:+8244655	MS.gene09540:CDS
AGGAAGACCGTTGGATAATC+TGG	0.313939	5.2:+8244609	MS.gene09540:CDS
AATTGGAACCTCTTCGACTT+TGG	0.334561	5.2:-8244178	None:intergenic
AGAGAGATGTGCAGGGGAGG+AGG	0.344828	5.2:+8245460	MS.gene09540:CDS
TCCTCAGAAACCTCAGCAAT+GGG	0.351899	5.2:-8246088	None:intergenic
GCAACAGCAGCGACGGCAGC+AGG	0.370156	5.2:-8245637	None:intergenic
GGCGACGAACATTGGAATAA+TGG	0.371602	5.2:+8244086	MS.gene09540:CDS
ACCGGTGAATGTTCTACTTC+AGG	0.375265	5.2:-8245865	None:intergenic
TTTCGAATGTTCACCATAAC+GGG	0.386900	5.2:+8246212	MS.gene09540:CDS
AGCTGCAGCAACAGCAGCGA+CGG	0.391380	5.2:-8245644	None:intergenic
TCGTCTAGGAGACAAATTAT+TGG	0.405029	5.2:-8246176	None:intergenic
TCATGAGAGGTGACCCGTTA+TGG	0.407788	5.2:-8246225	None:intergenic
TTGTTTCAGTTATAATCCTT+TGG	0.411329	5.2:+8245432	MS.gene09540:intron
CTTCTTGATGCCGCTCATCC+TGG	0.411853	5.2:+8244344	MS.gene09540:CDS
GAGATGTGCAGGGGAGGAGG+AGG	0.415206	5.2:+8245463	MS.gene09540:CDS
TTATGCATCGGAACAATTCC+AGG	0.415843	5.2:-8244362	None:intergenic
AACCCTGAGGTTGATGCTGC+TGG	0.418093	5.2:+8246151	MS.gene09540:CDS
AGCTCCTGCATATGATCAAC+AGG	0.424134	5.2:+8245663	MS.gene09540:CDS
AGGAGAGAGATGTGCAGGGG+AGG	0.437578	5.2:+8245457	MS.gene09540:CDS
TGGAGAGGAGAGAGATGTGC+AGG	0.442889	5.2:+8245452	MS.gene09540:CDS
TTCCTTCTCAAGACTATCAA+TGG	0.443572	5.2:-8245791	None:intergenic
TACTGCAAACCATGCAAATC+CGG	0.449249	5.2:+8245594	MS.gene09540:CDS
TATGCTTACTGCTGGTCTAC+AGG	0.461063	5.2:+8246048	MS.gene09540:CDS
GCAGATCTGAAATCCTCTCT+TGG	0.463193	5.2:+8244127	MS.gene09540:CDS
ACCTCAGCAATGGGGCTCAA+TGG	0.463460	5.2:-8246079	None:intergenic
GTTTCGAATGTTCACCATAA+CGG	0.473409	5.2:+8246211	MS.gene09540:CDS
GTGCCAGCAGCATCAACCTC+AGG	0.484253	5.2:-8246154	None:intergenic
GTAGAACCACCCTTGTTTGA+GGG	0.498601	5.2:-8245520	None:intergenic
AGTAGAACCACCCTTGTTTG+AGG	0.504441	5.2:-8245521	None:intergenic
CAACAAACTCAAAATCACTA+AGG	0.505654	5.2:+8244451	MS.gene09540:CDS
CTCCTCAGAAACCTCAGCAA+TGG	0.518364	5.2:-8246089	None:intergenic
TGATGACAATGGATCTGAGT+TGG	0.524539	5.2:+8246012	MS.gene09540:CDS
ATCAAGAAGCTGACAATGAA+CGG	0.527675	5.2:-8244330	None:intergenic
CGGTGGTTGCAAAAGCTGCT+AGG	0.530783	5.2:+8245614	MS.gene09540:CDS
CTGTTAATTCTGGACAGCAC+AGG	0.531391	5.2:+8244665	MS.gene09540:CDS
TGGAATTGTTCCGATGCATA+AGG	0.531970	5.2:+8244364	MS.gene09540:CDS
GCATATTGAGGTTAGCAAGC+TGG	0.533221	5.2:+8244582	MS.gene09540:intron
CCCCATTGCTGAGGTTTCTG+AGG	0.538400	5.2:+8246087	MS.gene09540:CDS
AGCAGCATCAACCTCAGGGT+TGG	0.539714	5.2:-8246149	None:intergenic
CACTCTCAACCCTCAAACAA+GGG	0.547676	5.2:+8245511	MS.gene09540:CDS
CGAGCAGTGTGGGAAGATTG+AGG	0.547920	5.2:-8245556	None:intergenic
ATCATTCCTTCGAGCAGTGT+GGG	0.553545	5.2:-8245566	None:intergenic
ATCCATTGATAGTCTTGAGA+AGG	0.556956	5.2:+8245789	MS.gene09540:CDS
TTGCAACCACCGGATTTGCA+TGG	0.557039	5.2:-8245603	None:intergenic
ACACTCTCAACCCTCAAACA+AGG	0.557498	5.2:+8245510	MS.gene09540:CDS
GGAGAGGAGAGAGATGTGCA+GGG	0.562837	5.2:+8245453	MS.gene09540:CDS
GCCATTGAGCCCCATTGCTG+AGG	0.565737	5.2:+8246078	MS.gene09540:CDS
CAATCTCTCCAAAGTCGAAG+AGG	0.568906	5.2:+8244170	MS.gene09540:CDS
CACATCTCTCTCCTCTCCAA+AGG	0.574177	5.2:-8245448	None:intergenic
GAGAGGAGAGAGATGTGCAG+GGG	0.575095	5.2:+8245454	MS.gene09540:CDS
GAGGTTAGCAAGCTGGTGAA+AGG	0.576068	5.2:+8244589	MS.gene09540:CDS
AGTACCTGTTGATCATATGC+AGG	0.577474	5.2:-8245667	None:intergenic
TCGAAATTCACCTTATGCAT+CGG	0.580314	5.2:-8244374	None:intergenic
GGTCACCTCTCATGATCTGA+AGG	0.580315	5.2:+8246233	MS.gene09540:CDS
GCTCAAGCTATGCTTACTGC+TGG	0.581689	5.2:+8246040	MS.gene09540:CDS
ATGGATGCTGCATACTTCGT+CGG	0.586038	5.2:+8244105	MS.gene09540:CDS
ACATCAGAAAGCCTTCGTCT+AGG	0.591311	5.2:-8246190	None:intergenic
TCCTGAAGTAGAACATTCAC+CGG	0.595180	5.2:+8245864	MS.gene09540:CDS
TGAGATGATTCAGAATTACA+AGG	0.599247	5.2:+8244412	MS.gene09540:CDS
TCAGTTATAATCCTTTGGAG+AGG	0.609241	5.2:+8245437	MS.gene09540:intron
GCTGGTGAAAGGAAGACCGT+TGG	0.609936	5.2:+8244600	MS.gene09540:CDS
AATCTTCCCACACTGCTCGA+AGG	0.610802	5.2:+8245560	MS.gene09540:CDS
TGCCAGCAGCATCAACCTCA+GGG	0.613718	5.2:-8246153	None:intergenic
CATCATTCCTTCGAGCAGTG+TGG	0.625952	5.2:-8245567	None:intergenic
CGGAACAATTCCAGGATGAG+CGG	0.629441	5.2:-8244354	None:intergenic
ATAATTTGTCTCCTAGACGA+AGG	0.644751	5.2:+8246179	MS.gene09540:CDS
TGCAAACCATGCAAATCCGG+TGG	0.660574	5.2:+8245597	MS.gene09540:CDS
GAGTTGAATTGATCCAAGAG+AGG	0.661001	5.2:-8244140	None:intergenic
TTGTATGCTACTGATGACAA+TGG	0.664708	5.2:+8246001	MS.gene09540:CDS
ATAATCTGGAGTTCATGCAA+TGG	0.681963	5.2:+8244623	MS.gene09540:CDS
TCTCAACCCTCAAACAAGGG+TGG	0.685605	5.2:+8245514	MS.gene09540:CDS
CCTCAGAAACCTCAGCAATG+GGG	0.699654	5.2:-8246087	None:intergenic
AAAGAACTTTGCCAACCCTG+AGG	0.702193	5.2:+8246138	MS.gene09540:CDS
ATGAACTCCAGATTATCCAA+CGG	0.710109	5.2:-8244616	None:intergenic
AGGGTGGTTCTACTTCACAC+AGG	0.720858	5.2:+8245530	MS.gene09540:CDS
GCAGTGTGGGAAGATTGAGG+AGG	0.731744	5.2:-8245553	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAAATTGAAGAAAATTGAAT+CGG	-	chr5.2:8244207-8244226	None:intergenic	15.0%
!!	GATATTGGTATTAATTATAT+TGG	+	chr5.2:8245241-8245260	MS.gene09540:intron	15.0%
!!	TATTAATTATATTGGATTTG+AGG	+	chr5.2:8245249-8245268	MS.gene09540:intron	15.0%
!!!	ATGTTTTAATGAAAATTTTC+TGG	+	chr5.2:8244880-8244899	MS.gene09540:intron	15.0%
!!!	TATCTTTGAATTTGATAATT+AGG	+	chr5.2:8244778-8244797	MS.gene09540:intron	15.0%
!!	AAATTAAGAAAATCACGAAT+CGG	-	chr5.2:8244537-8244556	None:intergenic	20.0%
!!!	TGAATTGTGAAATTTTGTTT+AGG	+	chr5.2:8244295-8244314	MS.gene09540:intron	20.0%
!!!	TGATAATTAGGTTTTATGAT+TGG	+	chr5.2:8244790-8244809	MS.gene09540:intron	20.0%
!	GGATGAAATCTTGAAAATTA+GGG	+	chr5.2:8244901-8244920	MS.gene09540:intron	25.0%
!	TAATGATCATATTGGATTTG+AGG	+	chr5.2:8245150-8245169	MS.gene09540:intron	25.0%
!	TGGATGAAATCTTGAAAATT+AGG	+	chr5.2:8244900-8244919	MS.gene09540:intron	25.0%
!	TTGTTTCAGTTATAATCCTT+TGG	+	chr5.2:8245432-8245451	MS.gene09540:intron	25.0%
!!	ATTTTTACTTTGCAAAACTG+AGG	+	chr5.2:8245818-8245837	MS.gene09540:CDS	25.0%
!!	CTAAGGTAAATTTCGATTTT+CGG	+	chr5.2:8244468-8244487	MS.gene09540:intron	25.0%
!!	GTTTGGTTAGTTCAAAATTA+AGG	+	chr5.2:8245366-8245385	MS.gene09540:intron	25.0%
!!	TGAAATTGGTAATTGTTGAT+GGG	+	chr5.2:8245920-8245939	MS.gene09540:intron	25.0%
!!	TGCATATTTTGTAATTGACT+TGG	+	chr5.2:8245393-8245412	MS.gene09540:intron	25.0%
!!	TGTGAATTTGTTTATGATTC+AGG	+	chr5.2:8245955-8245974	MS.gene09540:intron	25.0%
!!	TTGAAATTGGTAATTGTTGA+TGG	+	chr5.2:8245919-8245938	MS.gene09540:intron	25.0%
!!	TTTTTACTTTGCAAAACTGA+GGG	+	chr5.2:8245819-8245838	MS.gene09540:CDS	25.0%
!!!	CGTTACTCTAAAATTTTTTG+CGG	+	chr5.2:8244697-8244716	MS.gene09540:intron	25.0%
!!!	GTTTTTCGTTGATTTTGTTT+AGG	+	chr5.2:8244231-8244250	MS.gene09540:intron	25.0%
!!!	TCAAAGTCTTGTTTTGATAT+TGG	+	chr5.2:8245226-8245245	MS.gene09540:intron	25.0%
!!!	TCACTTTTGAGTATTGAAAT+TGG	+	chr5.2:8245906-8245925	MS.gene09540:intron	25.0%
!!!	TCATGATTAGTTTAAAACTG+AGG	+	chr5.2:8244994-8245013	MS.gene09540:intron	25.0%
!!!	TGAACAAGGTTTTGATAATT+AGG	+	chr5.2:8245028-8245047	MS.gene09540:intron	25.0%
!!!	TGTATTGGTAATGATCATAT+TGG	+	chr5.2:8245142-8245161	MS.gene09540:intron	25.0%
	AATAAAACATTCAGCAACCT+CGG	-	chr5.2:8245199-8245218	None:intergenic	30.0%
	ACTTAAGGTGATACAGATAA+CGG	+	chr5.2:8245756-8245775	MS.gene09540:intron	30.0%
	AGAGTTTACAAGCAAAATAC+CGG	-	chr5.2:8245886-8245905	None:intergenic	30.0%
	CAACAAACTCAAAATCACTA+AGG	+	chr5.2:8244451-8244470	MS.gene09540:CDS	30.0%
	GAAAATTGAATCGGAGAAAT+TGG	-	chr5.2:8244198-8244217	None:intergenic	30.0%
	GAATTCATTCAAATGCTTTG+AGG	+	chr5.2:8244965-8244984	MS.gene09540:intron	30.0%
	GTGATAATTATGTGGATTTG+AGG	+	chr5.2:8245337-8245356	MS.gene09540:intron	30.0%
	TACTGTGATTCTGTTAATTC+TGG	+	chr5.2:8244655-8244674	MS.gene09540:CDS	30.0%
	TGAGATGATTCAGAATTACA+AGG	+	chr5.2:8244412-8244431	MS.gene09540:CDS	30.0%
	TGATACTGGTGATAATTATG+TGG	+	chr5.2:8245329-8245348	MS.gene09540:intron	30.0%
	TTGAAAATTAGGGTTACGAT+TGG	+	chr5.2:8244911-8244930	MS.gene09540:intron	30.0%
!	GTTTGATTAGTTCAAAACTG+AGG	+	chr5.2:8245278-8245297	MS.gene09540:intron	30.0%
!	TGGATTTGAGGATTTAAGTT+TGG	+	chr5.2:8245261-8245280	MS.gene09540:intron	30.0%
!!	AATTTTGTTTAGGCTTGTTC+TGG	+	chr5.2:8244305-8244324	MS.gene09540:intron	30.0%
!!!	TATTTTGTAATTGACTTGGC+TGG	+	chr5.2:8245397-8245416	MS.gene09540:intron	30.0%
!!!	TTGAAGTCTTGTTTTGATAC+TGG	+	chr5.2:8245315-8245334	MS.gene09540:intron	30.0%
	AGGTTACTGAATGTTGAACA+AGG	+	chr5.2:8245014-8245033	MS.gene09540:intron	35.0%
	ATCAAGAAGCTGACAATGAA+CGG	-	chr5.2:8244333-8244352	None:intergenic	35.0%
	ATGAACTCCAGATTATCCAA+CGG	-	chr5.2:8244619-8244638	None:intergenic	35.0%
	GCTTGATAAATTCTAAACCG+AGG	+	chr5.2:8245179-8245198	MS.gene09540:intron	35.0%
	GTGCATAGATCTAACACTTA+AGG	+	chr5.2:8245741-8245760	MS.gene09540:intron	35.0%
	GTTTCGAATGTTCACCATAA+CGG	+	chr5.2:8246211-8246230	MS.gene09540:CDS	35.0%
	TCGAAATTCACCTTATGCAT+CGG	-	chr5.2:8244377-8244396	None:intergenic	35.0%
	TCGTCTAGGAGACAAATTAT+TGG	-	chr5.2:8246179-8246198	None:intergenic	35.0%
	TGATGCTAATCTTAATTGCG+TGG	+	chr5.2:8244749-8244768	MS.gene09540:intron	35.0%
	TTCCTTCTCAAGACTATCAA+TGG	-	chr5.2:8245794-8245813	None:intergenic	35.0%
	TTGTATGCTACTGATGACAA+TGG	+	chr5.2:8246001-8246020	MS.gene09540:CDS	35.0%
	TTTCGAATGTTCACCATAAC+GGG	+	chr5.2:8246212-8246231	MS.gene09540:CDS	35.0%
!	ATAATCTGGAGTTCATGCAA+TGG	+	chr5.2:8244623-8244642	MS.gene09540:CDS	35.0%
!	ATAATTTGTCTCCTAGACGA+AGG	+	chr5.2:8246179-8246198	MS.gene09540:CDS	35.0%
!	ATCCATTGATAGTCTTGAGA+AGG	+	chr5.2:8245789-8245808	MS.gene09540:CDS	35.0%
!	TCAGTTATAATCCTTTGGAG+AGG	+	chr5.2:8245437-8245456	MS.gene09540:intron	35.0%
!	TTGATTTTCGCAGCATATTG+AGG	+	chr5.2:8244570-8244589	MS.gene09540:intron	35.0%
!!	GAAGTGTCTTGTTGTTGTAT+TGG	+	chr5.2:8245127-8245146	MS.gene09540:intron	35.0%
	AATTGGAACCTCTTCGACTT+TGG	-	chr5.2:8244181-8244200	None:intergenic	40.0%
	AGTACCTGTTGATCATATGC+AGG	-	chr5.2:8245670-8245689	None:intergenic	40.0%
	GAGTTGAATTGATCCAAGAG+AGG	-	chr5.2:8244143-8244162	None:intergenic	40.0%
	TACTGCAAACCATGCAAATC+CGG	+	chr5.2:8245594-8245613	MS.gene09540:CDS	40.0%
	TCCTGAAGTAGAACATTCAC+CGG	+	chr5.2:8245864-8245883	MS.gene09540:CDS	40.0%
	TGATGACAATGGATCTGAGT+TGG	+	chr5.2:8246012-8246031	MS.gene09540:CDS	40.0%
	TGGAATTGTTCCGATGCATA+AGG	+	chr5.2:8244364-8244383	MS.gene09540:CDS	40.0%
	TTATGCATCGGAACAATTCC+AGG	-	chr5.2:8244365-8244384	None:intergenic	40.0%
	AAAGAACTTTGCCAACCCTG+AGG	+	chr5.2:8246138-8246157	MS.gene09540:CDS	45.0%
	ACACTCTCAACCCTCAAACA+AGG	+	chr5.2:8245510-8245529	MS.gene09540:CDS	45.0%
	ACATCAGAAAGCCTTCGTCT+AGG	-	chr5.2:8246193-8246212	None:intergenic	45.0%
	ACCGGTGAATGTTCTACTTC+AGG	-	chr5.2:8245868-8245887	None:intergenic	45.0%
	AGCTCCTGCATATGATCAAC+AGG	+	chr5.2:8245663-8245682	MS.gene09540:CDS	45.0%
	AGGAAGACCGTTGGATAATC+TGG	+	chr5.2:8244609-8244628	MS.gene09540:CDS	45.0%
	ATCATTCCTTCGAGCAGTGT+GGG	-	chr5.2:8245569-8245588	None:intergenic	45.0%
	ATGGATGCTGCATACTTCGT+CGG	+	chr5.2:8244105-8244124	MS.gene09540:CDS	45.0%
	CAATCTCTCCAAAGTCGAAG+AGG	+	chr5.2:8244170-8244189	MS.gene09540:CDS	45.0%
	CACTCTCAACCCTCAAACAA+GGG	+	chr5.2:8245511-8245530	MS.gene09540:CDS	45.0%
	CTGTTAATTCTGGACAGCAC+AGG	+	chr5.2:8244665-8244684	MS.gene09540:CDS	45.0%
	GCATATTGAGGTTAGCAAGC+TGG	+	chr5.2:8244582-8244601	MS.gene09540:intron	45.0%
	GGCGACGAACATTGGAATAA+TGG	+	chr5.2:8244086-8244105	MS.gene09540:CDS	45.0%
	TCCTCAGAAACCTCAGCAAT+GGG	-	chr5.2:8246091-8246110	None:intergenic	45.0%
!	AGTAGAACCACCCTTGTTTG+AGG	-	chr5.2:8245524-8245543	None:intergenic	45.0%
!	GCAGATCTGAAATCCTCTCT+TGG	+	chr5.2:8244127-8244146	MS.gene09540:CDS	45.0%
!	GTAGAACCACCCTTGTTTGA+GGG	-	chr5.2:8245523-8245542	None:intergenic	45.0%
!	TATGCTTACTGCTGGTCTAC+AGG	+	chr5.2:8246048-8246067	MS.gene09540:CDS	45.0%
	AATCTTCCCACACTGCTCGA+AGG	+	chr5.2:8245560-8245579	MS.gene09540:CDS	50.0%
	CACATCTCTCTCCTCTCCAA+AGG	-	chr5.2:8245451-8245470	None:intergenic	50.0%
	CATCATTCCTTCGAGCAGTG+TGG	-	chr5.2:8245570-8245589	None:intergenic	50.0%
	CCTCAGAAACCTCAGCAATG+GGG	-	chr5.2:8246090-8246109	None:intergenic	50.0%
	CGGAACAATTCCAGGATGAG+CGG	-	chr5.2:8244357-8244376	None:intergenic	50.0%
	CTCCTCAGAAACCTCAGCAA+TGG	-	chr5.2:8246092-8246111	None:intergenic	50.0%
	GAGGTTAGCAAGCTGGTGAA+AGG	+	chr5.2:8244589-8244608	MS.gene09540:CDS	50.0%
	GCTCAAGCTATGCTTACTGC+TGG	+	chr5.2:8246040-8246059	MS.gene09540:CDS	50.0%
	TCATGAGAGGTGACCCGTTA+TGG	-	chr5.2:8246228-8246247	None:intergenic	50.0%
	TCTCAACCCTCAAACAAGGG+TGG	+	chr5.2:8245514-8245533	MS.gene09540:CDS	50.0%
	TGCAAACCATGCAAATCCGG+TGG	+	chr5.2:8245597-8245616	MS.gene09540:CDS	50.0%
	TTGCAACCACCGGATTTGCA+TGG	-	chr5.2:8245606-8245625	None:intergenic	50.0%
!	AGGGTGGTTCTACTTCACAC+AGG	+	chr5.2:8245530-8245549	MS.gene09540:CDS	50.0%
!	CTAGCAGCTTTTGCAACCAC+CGG	-	chr5.2:8245616-8245635	None:intergenic	50.0%
	ACCTCAGCAATGGGGCTCAA+TGG	-	chr5.2:8246082-8246101	None:intergenic	55.0%
	AGCAGCATCAACCTCAGGGT+TGG	-	chr5.2:8246152-8246171	None:intergenic	55.0%
	CCCCATTGCTGAGGTTTCTG+AGG	+	chr5.2:8246087-8246106	MS.gene09540:CDS	55.0%
	CGAGCAGTGTGGGAAGATTG+AGG	-	chr5.2:8245559-8245578	None:intergenic	55.0%
	CGGTGGTTGCAAAAGCTGCT+AGG	+	chr5.2:8245614-8245633	MS.gene09540:CDS	55.0%
	CTTCTTGATGCCGCTCATCC+TGG	+	chr5.2:8244344-8244363	MS.gene09540:CDS	55.0%
	GAGAGGAGAGAGATGTGCAG+GGG	+	chr5.2:8245454-8245473	MS.gene09540:CDS	55.0%
	GCAGTGTGGGAAGATTGAGG+AGG	-	chr5.2:8245556-8245575	None:intergenic	55.0%
	GCTGGTGAAAGGAAGACCGT+TGG	+	chr5.2:8244600-8244619	MS.gene09540:CDS	55.0%
	GGAGAGGAGAGAGATGTGCA+GGG	+	chr5.2:8245453-8245472	MS.gene09540:CDS	55.0%
	TGCCAGCAGCATCAACCTCA+GGG	-	chr5.2:8246156-8246175	None:intergenic	55.0%
	TGGAGAGGAGAGAGATGTGC+AGG	+	chr5.2:8245452-8245471	MS.gene09540:CDS	55.0%
!!	AACCCTGAGGTTGATGCTGC+TGG	+	chr5.2:8246151-8246170	MS.gene09540:CDS	55.0%
	AGAGAGATGTGCAGGGGAGG+AGG	+	chr5.2:8245460-8245479	MS.gene09540:CDS	60.0%
	AGCTGCAGCAACAGCAGCGA+CGG	-	chr5.2:8245647-8245666	None:intergenic	60.0%
	AGGAGAGAGATGTGCAGGGG+AGG	+	chr5.2:8245457-8245476	MS.gene09540:CDS	60.0%
	GCCATTGAGCCCCATTGCTG+AGG	+	chr5.2:8246078-8246097	MS.gene09540:CDS	60.0%
	GTGCCAGCAGCATCAACCTC+AGG	-	chr5.2:8246157-8246176	None:intergenic	60.0%
	GAGATGTGCAGGGGAGGAGG+AGG	+	chr5.2:8245463-8245482	MS.gene09540:CDS	65.0%
	GCAACAGCAGCGACGGCAGC+AGG	-	chr5.2:8245640-8245659	None:intergenic	70.0%

Chromosome	Type	Strat	End	Strand	Name
chr5.2	gene	8244084	8246252	8244084	ID=MS.gene09540
chr5.2	mRNA	8244084	8246252	8244084	ID=MS.gene09540.t1;Parent=MS.gene09540
chr5.2	exon	8244084	8244191	8244084	ID=MS.gene09540.t1.exon1;Parent=MS.gene09540.t1
chr5.2	CDS	8244084	8244191	8244084	ID=cds.MS.gene09540.t1;Parent=MS.gene09540.t1
chr5.2	exon	8244317	8244472	8244317	ID=MS.gene09540.t1.exon2;Parent=MS.gene09540.t1
chr5.2	CDS	8244317	8244472	8244317	ID=cds.MS.gene09540.t1;Parent=MS.gene09540.t1
chr5.2	exon	8244583	8244686	8244583	ID=MS.gene09540.t1.exon3;Parent=MS.gene09540.t1
chr5.2	CDS	8244583	8244686	8244583	ID=cds.MS.gene09540.t1;Parent=MS.gene09540.t1
chr5.2	exon	8245441	8245684	8245441	ID=MS.gene09540.t1.exon4;Parent=MS.gene09540.t1
chr5.2	CDS	8245441	8245684	8245441	ID=cds.MS.gene09540.t1;Parent=MS.gene09540.t1
chr5.2	exon	8245772	8245885	8245772	ID=MS.gene09540.t1.exon5;Parent=MS.gene09540.t1
chr5.2	CDS	8245772	8245885	8245772	ID=cds.MS.gene09540.t1;Parent=MS.gene09540.t1
chr5.2	exon	8245977	8246252	8245977	ID=MS.gene09540.t1.exon6;Parent=MS.gene09540.t1
chr5.2	CDS	8245977	8246252	8245977	ID=cds.MS.gene09540.t1;Parent=MS.gene09540.t1

Gene Sequence

>MS.gene09540

ATGGCGACGAACATTGGAATAATGGATGCTGCATACTTCGTCGGCAGATCTGAAATCCTCTCTTGGATCAATTCAACTCTTCAACTCAATCTCTCCAAAGTCGAAGAGGTTCCAATTTCTCCGATTCAATTTTCTTCAATTTTCATCGTTTTTCGTTGATTTTGTTTAGGTTTTTGATTTACTGTTAATAATTTGATAGATCTGATTTTGTTGAATTGTGAAATTTTGTTTAGGCTTGTTCTGGTGCCGTTCATTGTCAGCTTCTTGATGCCGCTCATCCTGGAATTGTTCCGATGCATAAGGTGAATTTCGATGCGAAGAATGAGTATGAGATGATTCAGAATTACAAGGTTCTTCAAGATGTTTTCAACAAACTCAAAATCACTAAGGTAAATTTCGATTTTCGGTTGCGTTCTGATTTTCGTTTTTCTTTGAGATCTTGCGATTTTTCCGATTCGTGATTTTCTTAATTTTTTTATTTTGATTTTGATTTTCGCAGCATATTGAGGTTAGCAAGCTGGTGAAAGGAAGACCGTTGGATAATCTGGAGTTCATGCAATGGATGAAACGATACTGTGATTCTGTTAATTCTGGACAGCACAGGTAATTTAATCGTTACTCTAAAATTTTTTGCGGATGCGTTTATTGTTTCTGTTGAAAATTTCTGATGCTAATCTTAATTGCGTGGAATTGTTATCTTTGAATTTGATAATTAGGTTTTATGATTGGAAATTTGTAATTCTACTGACGAACATATGTGATTAGAGTTAAAATTCAAATTTAATTTCATATTCAAATGTTTTAATGAAAATTTTCTGGATGAAATCTTGAAAATTAGGGTTACGATTGGAGTTCTGTAATTCTGCTGATATATACGATTAGAATTCATTCAAATGCTTTGAGGATTGAATCATGATTAGTTTAAAACTGAGGTTACTGAATGTTGAACAAGGTTTTGATAATTAGGTTTTACAAGTCTATTGATGACGATATATGATTAGAATTCAAGTTCAGTTTTATATGTCTTAACTCTTAACTGTATCGAAGTGTCTTGTTGTTGTATTGGTAATGATCATATTGGATTTGAGGATTTAAGCTTGATAAATTCTAAACCGAGGTTGCTGAATGTTTTATTGAATGCGTCAAAGTCTTGTTTTGATATTGGTATTAATTATATTGGATTTGAGGATTTAAGTTTGATTAGTTCAAAACTGAGGTTGTTTTAAATGTATTGAAGTCTTGTTTTGATACTGGTGATAATTATGTGGATTTGAGGATTTAAGTTTGGTTAGTTCAAAATTAAGGTTGCTGCATATTTTGTAATTGACTTGGCTGGCTTATGTGTTTCTTGTTTCAGTTATAATCCTTTGGAGAGGAGAGAGATGTGCAGGGGAGGAGGAGGAAGAGAAGTGAGTAAAAAATCTGCACACTCTCAACCCTCAAACAAGGGTGGTTCTACTTCACACAGGCCTCCTCAATCTTCCCACACTGCTCGAAGGAATGATGTGTCTACTGCAAACCATGCAAATCCGGTGGTTGCAAAAGCTGCTAGGCCTGCTGCCGTCGCTGCTGTTGCTGCAGCTCCTGCATATGATCAACAGGTACTTTGTTTTTATCATCTCATAGATGTTATCAAGTGATTTATGAATTATTTTAAGTGCATAGATCTAACACTTAAGGTGATACAGATAACGGAATTGAAGTTATCCATTGATAGTCTTGAGAAGGAACGAGATTTTTACTTTGCAAAACTGAGGGATATTGAGATACTTTGTCAGACTCCTGAAGTAGAACATTCACCGGTATTTTGCTTGTAAACTCTTCACTTTTGAGTATTGAAATTGGTAATTGTTGATGGGTTACTGATGAAATGTGAATTTGTTTATGATTCAGGTTTTTGCAGCAATACAGAAGATATTGTATGCTACTGATGACAATGGATCTGAGTTGGAAGAAGCTCAAGCTATGCTTACTGCTGGTCTACAGGAAGCAGAGCCATTGAGCCCCATTGCTGAGGTTTCTGAGGAGAAGAGCAGTTCTGAAAATCTCAAGAGAAAGAACTTTGCCAACCCTGAGGTTGATGCTGCTGGCACCAATAATTTGTCTCCTAGACGAAGGCTTTCTGATGTTTCGAATGTTCACCATAACGGGTCACCTCTCATGATCTGA

Protein sequence

>MS.gene09540.t1

MATNIGIMDAAYFVGRSEILSWINSTLQLNLSKVEEACSGAVHCQLLDAAHPGIVPMHKVNFDAKNEYEMIQNYKVLQDVFNKLKITKHIEVSKLVKGRPLDNLEFMQWMKRYCDSVNSGQHSYNPLERREMCRGGGGREVSKKSAHSQPSNKGGSTSHRPPQSSHTARRNDVSTANHANPVVAKAARPAAVAAVAAAPAYDQQITELKLSIDSLEKERDFYFAKLRDIEILCQTPEVEHSPVFAAIQKILYATDDNGSELEEAQAMLTAGLQEAEPLSPIAEVSEEKSSSENLKRKNFANPEVDAAGTNNLSPRRRLSDVSNVHHNGSPLMI