AlfalfaGEDB | MS.gene09540

M. sativa cultivar XinJiangDaYe / MS.gene09540

KEGG: K10436
GO: GO:0003674 GO:0005488 GO:0005515 GO:0008017 GO:0008092 GO:0015631
PFAM: PF00307.34 PF03271.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09540.t1	XP_003611667.2	95.5	334	13	2	1	333	1	333	8.60E-162	579.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09540.t1	Q9FGQ6	58.9	338	122	4	1	332	1	327	7.5e-90	332.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09540.t1	G7K588	95.5	334	13	2	1	333	1	333	6.2e-162	579.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049397	MS.gene09540	0.848829	4.78E-60	-1.69E-46
MS.gene049596	MS.gene09540	0.806868	6.68E-50	-1.69E-46
MS.gene049622	MS.gene09540	0.849272	3.60E-60	-1.69E-46
MS.gene049989	MS.gene09540	0.88865	4.89E-73	-1.69E-46
MS.gene050297	MS.gene09540	0.907706	3.79E-81	-1.69E-46
MS.gene051094	MS.gene09540	0.824657	7.17E-54	-1.69E-46
MS.gene05124	MS.gene09540	0.810194	1.30E-50	-1.69E-46
MS.gene051263	MS.gene09540	0.835359	1.76E-56	-1.69E-46
MS.gene051629	MS.gene09540	0.853068	3.05E-61	-1.69E-46
MS.gene051742	MS.gene09540	0.832024	1.20E-55	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene000365	MS.gene09540	PPI
MS.gene00146	MS.gene09540	PPI
MS.gene003428	MS.gene09540	PPI
MS.gene005125	MS.gene09540	PPI
MS.gene009372	MS.gene09540	PPI
MS.gene029211	MS.gene09540	PPI
MS.gene029611	MS.gene09540	PPI
MS.gene033134	MS.gene09540	PPI
MS.gene035362	MS.gene09540	PPI
MS.gene035363	MS.gene09540	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09540.t1	MTR_5g016520	96.707	334	9	2	1	333	1	333	0.0	668
MS.gene09540.t1	MTR_0036s0210	58.657	283	94	5	1	276	1	267	1.95e-114	333
MS.gene09540.t1	MTR_4g108330	57.193	285	94	5	1	276	1	266	3.12e-109	320
MS.gene09540.t1	MTR_2072s0010	73.077	52	14	0	37	88	1	52	3.35e-20	82.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09540.t1	AT5G67270	61.494	348	97	10	1	332	1	327	6.06e-142	404
MS.gene09540.t1	AT3G47690	54.915	295	110	5	1	291	1	276	7.85e-112	326
MS.gene09540.t1	AT5G62500	57.194	278	97	5	1	272	1	262	4.63e-108	317

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Find 76 sgRNAs with CRISPR-Local

Find 121 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAACTTTGCCAACCCTG+AGG	0.702193	5.2:+8246138	MS.gene09540:CDS
AACCCTGAGGTTGATGCTGC+TGG	0.418093	5.2:+8246151	MS.gene09540:CDS
AATCTTCCCACACTGCTCGA+AGG	0.610802	5.2:+8245560	MS.gene09540:CDS
AATTGGAACCTCTTCGACTT+TGG	0.334561	5.2:-8244178	None:intergenic
ACACTCTCAACCCTCAAACA+AGG	0.557498	5.2:+8245510	MS.gene09540:CDS
ACATCAGAAAGCCTTCGTCT+AGG	0.591311	5.2:-8246190	None:intergenic
ACCGGTGAATGTTCTACTTC+AGG	0.375265	5.2:-8245865	None:intergenic
ACCTCAGCAATGGGGCTCAA+TGG	0.463460	5.2:-8246079	None:intergenic
AGAGAGATGTGCAGGGGAGG+AGG	0.344828	5.2:+8245460	MS.gene09540:CDS
AGCAGCATCAACCTCAGGGT+TGG	0.539714	5.2:-8246149	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATAAAACATTCAGCAACCT+CGG	-	chr5.2:8245199-8245218	None:intergenic	30.0%
ACTTAAGGTGATACAGATAA+CGG	+	chr5.2:8245756-8245775	MS.gene09540:intron	30.0%
AGAGTTTACAAGCAAAATAC+CGG	-	chr5.2:8245886-8245905	None:intergenic	30.0%
CAACAAACTCAAAATCACTA+AGG	+	chr5.2:8244451-8244470	MS.gene09540:CDS	30.0%
GAAAATTGAATCGGAGAAAT+TGG	-	chr5.2:8244198-8244217	None:intergenic	30.0%
GAATTCATTCAAATGCTTTG+AGG	+	chr5.2:8244965-8244984	MS.gene09540:intron	30.0%
GTGATAATTATGTGGATTTG+AGG	+	chr5.2:8245337-8245356	MS.gene09540:intron	30.0%
TACTGTGATTCTGTTAATTC+TGG	+	chr5.2:8244655-8244674	MS.gene09540:CDS	30.0%
TGAGATGATTCAGAATTACA+AGG	+	chr5.2:8244412-8244431	MS.gene09540:CDS	30.0%
TGATACTGGTGATAATTATG+TGG	+	chr5.2:8245329-8245348	MS.gene09540:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.2	gene	8244084	8246252	8244084	ID=MS.gene09540
chr5.2	mRNA	8244084	8246252	8244084	ID=MS.gene09540.t1;Parent=MS.gene09540
chr5.2	exon	8244084	8244191	8244084	ID=MS.gene09540.t1.exon1;Parent=MS.gene09540.t1
chr5.2	CDS	8244084	8244191	8244084	ID=cds.MS.gene09540.t1;Parent=MS.gene09540.t1
chr5.2	exon	8244317	8244472	8244317	ID=MS.gene09540.t1.exon2;Parent=MS.gene09540.t1
chr5.2	CDS	8244317	8244472	8244317	ID=cds.MS.gene09540.t1;Parent=MS.gene09540.t1
chr5.2	exon	8244583	8244686	8244583	ID=MS.gene09540.t1.exon3;Parent=MS.gene09540.t1
chr5.2	CDS	8244583	8244686	8244583	ID=cds.MS.gene09540.t1;Parent=MS.gene09540.t1
chr5.2	exon	8245441	8245684	8245441	ID=MS.gene09540.t1.exon4;Parent=MS.gene09540.t1
chr5.2	CDS	8245441	8245684	8245441	ID=cds.MS.gene09540.t1;Parent=MS.gene09540.t1
chr5.2	exon	8245772	8245885	8245772	ID=MS.gene09540.t1.exon5;Parent=MS.gene09540.t1
chr5.2	CDS	8245772	8245885	8245772	ID=cds.MS.gene09540.t1;Parent=MS.gene09540.t1
chr5.2	exon	8245977	8246252	8245977	ID=MS.gene09540.t1.exon6;Parent=MS.gene09540.t1
chr5.2	CDS	8245977	8246252	8245977	ID=cds.MS.gene09540.t1;Parent=MS.gene09540.t1

Gene Sequence

>MS.gene09540

ATGGCGACGAACATTGGAATAATGGATGCTGCATACTTCGTCGGCAGATCTGAAATCCTCTCTTGGATCAATTCAACTCTTCAACTCAATCTCTCCAAAGTCGAAGAGGTTCCAATTTCTCCGATTCAATTTTCTTCAATTTTCATCGTTTTTCGTTGATTTTGTTTAGGTTTTTGATTTACTGTTAATAATTTGATAGATCTGATTTTGTTGAATTGTGAAATTTTGTTTAGGCTTGTTCTGGTGCCGTTCATTGTCAGCTTCTTGATGCCGCTCATCCTGGAATTGTTCCGATGCATAAGGTGAATTTCGATGCGAAGAATGAGTATGAGATGATTCAGAATTACAAGGTTCTTCAAGATGTTTTCAACAAACTCAAAATCACTAAGGTAAATTTCGATTTTCGGTTGCGTTCTGATTTTCGTTTTTCTTTGAGATCTTGCGATTTTTCCGATTCGTGATTTTCTTAATTTTTTTATTTTGATTTTGATTTTCGCAGCATATTGAGGTTAGCAAGCTGGTGAAAGGAAGACCGTTGGATAATCTGGAGTTCATGCAATGGATGAAACGATACTGTGATTCTGTTAATTCTGGACAGCACAGGTAATTTAATCGTTACTCTAAAATTTTTTGCGGATGCGTTTATTGTTTCTGTTGAAAATTTCTGATGCTAATCTTAATTGCGTGGAATTGTTATCTTTGAATTTGATAATTAGGTTTTATGATTGGAAATTTGTAATTCTACTGACGAACATATGTGATTAGAGTTAAAATTCAAATTTAATTTCATATTCAAATGTTTTAATGAAAATTTTCTGGATGAAATCTTGAAAATTAGGGTTACGATTGGAGTTCTGTAATTCTGCTGATATATACGATTAGAATTCATTCAAATGCTTTGAGGATTGAATCATGATTAGTTTAAAACTGAGGTTACTGAATGTTGAACAAGGTTTTGATAATTAGGTTTTACAAGTCTATTGATGACGATATATGATTAGAATTCAAGTTCAGTTTTATATGTCTTAACTCTTAACTGTATCGAAGTGTCTTGTTGTTGTATTGGTAATGATCATATTGGATTTGAGGATTTAAGCTTGATAAATTCTAAACCGAGGTTGCTGAATGTTTTATTGAATGCGTCAAAGTCTTGTTTTGATATTGGTATTAATTATATTGGATTTGAGGATTTAAGTTTGATTAGTTCAAAACTGAGGTTGTTTTAAATGTATTGAAGTCTTGTTTTGATACTGGTGATAATTATGTGGATTTGAGGATTTAAGTTTGGTTAGTTCAAAATTAAGGTTGCTGCATATTTTGTAATTGACTTGGCTGGCTTATGTGTTTCTTGTTTCAGTTATAATCCTTTGGAGAGGAGAGAGATGTGCAGGGGAGGAGGAGGAAGAGAAGTGAGTAAAAAATCTGCACACTCTCAACCCTCAAACAAGGGTGGTTCTACTTCACACAGGCCTCCTCAATCTTCCCACACTGCTCGAAGGAATGATGTGTCTACTGCAAACCATGCAAATCCGGTGGTTGCAAAAGCTGCTAGGCCTGCTGCCGTCGCTGCTGTTGCTGCAGCTCCTGCATATGATCAACAGGTACTTTGTTTTTATCATCTCATAGATGTTATCAAGTGATTTATGAATTATTTTAAGTGCATAGATCTAACACTTAAGGTGATACAGATAACGGAATTGAAGTTATCCATTGATAGTCTTGAGAAGGAACGAGATTTTTACTTTGCAAAACTGAGGGATATTGAGATACTTTGTCAGACTCCTGAAGTAGAACATTCACCGGTATTTTGCTTGTAAACTCTTCACTTTTGAGTATTGAAATTGGTAATTGTTGATGGGTTACTGATGAAATGTGAATTTGTTTATGATTCAGGTTTTTGCAGCAATACAGAAGATATTGTATGCTACTGATGACAATGGATCTGAGTTGGAAGAAGCTCAAGCTATGCTTACTGCTGGTCTACAGGAAGCAGAGCCATTGAGCCCCATTGCTGAGGTTTCTGAGGAGAAGAGCAGTTCTGAAAATCTCAAGAGAAAGAACTTTGCCAACCCTGAGGTTGATGCTGCTGGCACCAATAATTTGTCTCCTAGACGAAGGCTTTCTGATGTTTCGAATGTTCACCATAACGGGTCACCTCTCATGATCTGA

Protein sequence

>MS.gene09540.t1

MATNIGIMDAAYFVGRSEILSWINSTLQLNLSKVEEACSGAVHCQLLDAAHPGIVPMHKVNFDAKNEYEMIQNYKVLQDVFNKLKITKHIEVSKLVKGRPLDNLEFMQWMKRYCDSVNSGQHSYNPLERREMCRGGGGREVSKKSAHSQPSNKGGSTSHRPPQSSHTARRNDVSTANHANPVVAKAARPAAVAAVAAAPAYDQQITELKLSIDSLEKERDFYFAKLRDIEILCQTPEVEHSPVFAAIQKILYATDDNGSELEEAQAMLTAGLQEAEPLSPIAEVSEEKSSSENLKRKNFANPEVDAAGTNNLSPRRRLSDVSNVHHNGSPLMI