AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene015202

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene015202.t1 MTR_5g016520 96.707 334 9 2 1 333 1 333 0.0 668
MS.gene015202.t1 MTR_0036s0210 58.657 283 94 5 1 276 1 267 1.95e-114 333
MS.gene015202.t1 MTR_4g108330 57.193 285 94 5 1 276 1 266 3.12e-109 320
MS.gene015202.t1 MTR_2072s0010 73.077 52 14 0 37 88 1 52 3.35e-20 82.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene015202.t1 AT5G67270 61.494 348 97 10 1 332 1 327 6.06e-142 404
MS.gene015202.t1 AT3G47690 54.915 295 110 5 1 291 1 276 7.85e-112 326
MS.gene015202.t1 AT5G62500 57.194 278 97 5 1 272 1 262 4.63e-108 317

Find 76 sgRNAs with CRISPR-Local

Find 121 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTGTGATTCTGTTAATTC+TGG 0.239455 5.2:+8226086 MS.gene015202:CDS
AGGAAGACCGTTGGATAATC+TGG 0.313939 5.2:+8226040 MS.gene015202:CDS
AATTGGAACCTCTTCGACTT+TGG 0.334561 5.2:-8225608 None:intergenic
AGAGAGATGTGCAGGGGAGG+AGG 0.344828 5.2:+8226892 MS.gene015202:CDS
TCCTCAGAAACCTCAGCAAT+GGG 0.351899 5.2:-8227521 None:intergenic
GCAACAGCAGCGACGGCAGC+AGG 0.370156 5.2:-8227069 None:intergenic
GGCGACGAACATTGGAATAA+TGG 0.371602 5.2:+8225516 MS.gene015202:CDS
ACCGGTGAATGTTCTACTTC+AGG 0.375265 5.2:-8227297 None:intergenic
TTTCGAATGTTCACCATAAC+GGG 0.386900 5.2:+8227645 MS.gene015202:CDS
AGCTGCAGCAACAGCAGCGA+CGG 0.391380 5.2:-8227076 None:intergenic
TCGTCTAGGAGACAAATTAT+TGG 0.405029 5.2:-8227609 None:intergenic
TCATGAGAGGTGACCCGTTA+TGG 0.407788 5.2:-8227658 None:intergenic
TTGTTTCAGTTATAATCCTT+TGG 0.411329 5.2:+8226864 MS.gene015202:intron
CTTCTTGATGCCGCTCATCC+TGG 0.411853 5.2:+8225775 MS.gene015202:CDS
GAGATGTGCAGGGGAGGAGG+AGG 0.415206 5.2:+8226895 MS.gene015202:CDS
TTATGCATCGGAACAATTCC+AGG 0.415843 5.2:-8225793 None:intergenic
AACCCTGAGGTTGATGCTGC+TGG 0.418093 5.2:+8227584 MS.gene015202:CDS
AGCTCCTGCATATGATCAAC+AGG 0.424134 5.2:+8227095 MS.gene015202:CDS
AGGAGAGAGATGTGCAGGGG+AGG 0.437578 5.2:+8226889 MS.gene015202:CDS
TGGAGAGGAGAGAGATGTGC+AGG 0.442889 5.2:+8226884 MS.gene015202:CDS
TTCCTTCTCAAGACTATCAA+TGG 0.443572 5.2:-8227223 None:intergenic
TACTGCAAACCATGCAAATC+CGG 0.449249 5.2:+8227026 MS.gene015202:CDS
TATGCTTACTGCTGGTCTAC+AGG 0.461063 5.2:+8227481 MS.gene015202:CDS
GCAGATCTGAAATCCTCTCT+TGG 0.463193 5.2:+8225557 MS.gene015202:CDS
ACCTCAGCAATGGGGCTCAA+TGG 0.463460 5.2:-8227512 None:intergenic
GTTTCGAATGTTCACCATAA+CGG 0.473409 5.2:+8227644 MS.gene015202:CDS
GTGCCAGCAGCATCAACCTC+AGG 0.484253 5.2:-8227587 None:intergenic
GTAGAACCACCCTTGTTTGA+GGG 0.498601 5.2:-8226952 None:intergenic
AGTAGAACCACCCTTGTTTG+AGG 0.504441 5.2:-8226953 None:intergenic
CAACAAACTCAAAATCACTA+AGG 0.505654 5.2:+8225882 MS.gene015202:CDS
CTCCTCAGAAACCTCAGCAA+TGG 0.518364 5.2:-8227522 None:intergenic
TGATGACAATGGATCTGAGT+TGG 0.524539 5.2:+8227445 MS.gene015202:CDS
ATCAAGAAGCTGACAATGAA+CGG 0.527675 5.2:-8225761 None:intergenic
CGGTGGTTGCAAAAGCTGCT+AGG 0.530783 5.2:+8227046 MS.gene015202:CDS
CTGTTAATTCTGGACAGCAC+AGG 0.531391 5.2:+8226096 MS.gene015202:CDS
TGGAATTGTTCCGATGCATA+AGG 0.531970 5.2:+8225795 MS.gene015202:CDS
GCATATTGAGGTTAGCAAGC+TGG 0.533221 5.2:+8226013 MS.gene015202:intron
CCCCATTGCTGAGGTTTCTG+AGG 0.538400 5.2:+8227520 MS.gene015202:CDS
AGCAGCATCAACCTCAGGGT+TGG 0.539714 5.2:-8227582 None:intergenic
CACTCTCAACCCTCAAACAA+GGG 0.547676 5.2:+8226943 MS.gene015202:CDS
CGAGCAGTGTGGGAAGATTG+AGG 0.547920 5.2:-8226988 None:intergenic
ATCATTCCTTCGAGCAGTGT+GGG 0.553545 5.2:-8226998 None:intergenic
ATCCATTGATAGTCTTGAGA+AGG 0.556956 5.2:+8227221 MS.gene015202:CDS
TTGCAACCACCGGATTTGCA+TGG 0.557039 5.2:-8227035 None:intergenic
ACACTCTCAACCCTCAAACA+AGG 0.557498 5.2:+8226942 MS.gene015202:CDS
GGAGAGGAGAGAGATGTGCA+GGG 0.562837 5.2:+8226885 MS.gene015202:CDS
GCCATTGAGCCCCATTGCTG+AGG 0.565737 5.2:+8227511 MS.gene015202:CDS
CAATCTCTCCAAAGTCGAAG+AGG 0.568906 5.2:+8225600 MS.gene015202:CDS
CACATCTCTCTCCTCTCCAA+AGG 0.574177 5.2:-8226880 None:intergenic
GAGAGGAGAGAGATGTGCAG+GGG 0.575095 5.2:+8226886 MS.gene015202:CDS
GAGGTTAGCAAGCTGGTGAA+AGG 0.576068 5.2:+8226020 MS.gene015202:CDS
AGTACCTGTTGATCATATGC+AGG 0.577474 5.2:-8227099 None:intergenic
TCGAAATTCACCTTATGCAT+CGG 0.580314 5.2:-8225805 None:intergenic
GGTCACCTCTCATGATCTGA+AGG 0.580315 5.2:+8227666 MS.gene015202:CDS
GCTCAAGCTATGCTTACTGC+TGG 0.581689 5.2:+8227473 MS.gene015202:CDS
ATGGATGCTGCATACTTCGT+CGG 0.586038 5.2:+8225535 MS.gene015202:CDS
ACATCAGAAAGCCTTCGTCT+AGG 0.591311 5.2:-8227623 None:intergenic
TCCTGAAGTAGAACATTCAC+CGG 0.595180 5.2:+8227296 MS.gene015202:CDS
TGAGATGATTCAGAATTACA+AGG 0.599247 5.2:+8225843 MS.gene015202:CDS
TCAGTTATAATCCTTTGGAG+AGG 0.609241 5.2:+8226869 MS.gene015202:intron
GCTGGTGAAAGGAAGACCGT+TGG 0.609936 5.2:+8226031 MS.gene015202:CDS
AATCTTCCCACACTGCTCGA+AGG 0.610802 5.2:+8226992 MS.gene015202:CDS
TGCCAGCAGCATCAACCTCA+GGG 0.613718 5.2:-8227586 None:intergenic
CATCATTCCTTCGAGCAGTG+TGG 0.625952 5.2:-8226999 None:intergenic
CGGAACAATTCCAGGATGAG+CGG 0.629441 5.2:-8225785 None:intergenic
ATAATTTGTCTCCTAGACGA+AGG 0.644751 5.2:+8227612 MS.gene015202:CDS
TGCAAACCATGCAAATCCGG+TGG 0.660574 5.2:+8227029 MS.gene015202:CDS
GAGTTGAATTGATCCAAGAG+AGG 0.661001 5.2:-8225570 None:intergenic
TTGTATGCTACTGATGACAA+TGG 0.664708 5.2:+8227434 MS.gene015202:CDS
ATAATCTGGAGTTCATGCAA+TGG 0.681963 5.2:+8226054 MS.gene015202:CDS
TCTCAACCCTCAAACAAGGG+TGG 0.685605 5.2:+8226946 MS.gene015202:CDS
CCTCAGAAACCTCAGCAATG+GGG 0.699654 5.2:-8227520 None:intergenic
AAAGAACTTTGCCAACCCTG+AGG 0.702193 5.2:+8227571 MS.gene015202:CDS
ATGAACTCCAGATTATCCAA+CGG 0.710109 5.2:-8226047 None:intergenic
AGGGTGGTTCTACTTCACAC+AGG 0.720858 5.2:+8226962 MS.gene015202:CDS
GCAGTGTGGGAAGATTGAGG+AGG 0.731744 5.2:-8226985 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTGAAGAAAATTGAAT+CGG - chr5.2:8225637-8225656 None:intergenic 15.0%
!! GATATTGGTATTAATTATAT+TGG + chr5.2:8226672-8226691 MS.gene015202:intron 15.0%
!! TATTAATTATATTGGATTTG+AGG + chr5.2:8226680-8226699 MS.gene015202:intron 15.0%
!!! ATGTTTTAATGAAAATTTTC+TGG + chr5.2:8226310-8226329 MS.gene015202:intron 15.0%
!!! TATCTTTGAATTTGATAATT+AGG + chr5.2:8226208-8226227 MS.gene015202:intron 15.0%
!! AAATTAAGAAAATCACGAAT+CGG - chr5.2:8225968-8225987 None:intergenic 20.0%
!!! TGAATTGTGAAATTTTGTTT+AGG + chr5.2:8225726-8225745 MS.gene015202:intron 20.0%
!!! TGATAATTAGGTTTTATGAT+TGG + chr5.2:8226220-8226239 MS.gene015202:intron 20.0%
!!! TTTTTCGTTGATTTTGTTTT+AGG + chr5.2:8225662-8225681 MS.gene015202:intron 20.0%
! GGATGAAATCTTGAAAATTA+GGG + chr5.2:8226331-8226350 MS.gene015202:intron 25.0%
! TAATGATCATATTGGATTTG+AGG + chr5.2:8226581-8226600 MS.gene015202:intron 25.0%
! TGATAATTATGTTGGATTTG+AGG + chr5.2:8226769-8226788 MS.gene015202:intron 25.0%
! TGGATGAAATCTTGAAAATT+AGG + chr5.2:8226330-8226349 MS.gene015202:intron 25.0%
! TTGTTTCAGTTATAATCCTT+TGG + chr5.2:8226864-8226883 MS.gene015202:intron 25.0%
!! ATTTTTACTTTGCAAAACTG+AGG + chr5.2:8227250-8227269 MS.gene015202:CDS 25.0%
!! CTAAGGTAAATTTCGATTTT+CGG + chr5.2:8225899-8225918 MS.gene015202:intron 25.0%
!! GTTTGGTTAGTTCAAAATTA+AGG + chr5.2:8226798-8226817 MS.gene015202:intron 25.0%
!! TGAAATTGGTAATTGTTGAT+GGG + chr5.2:8227352-8227371 MS.gene015202:intron 25.0%
!! TGCATATTTTGTAATTGACT+TGG + chr5.2:8226825-8226844 MS.gene015202:intron 25.0%
!! TTGAAATTGGTAATTGTTGA+TGG + chr5.2:8227351-8227370 MS.gene015202:intron 25.0%
!! TTTTTACTTTGCAAAACTGA+GGG + chr5.2:8227251-8227270 MS.gene015202:CDS 25.0%
!!! GTGAATTTTGTTTATGATTC+AGG + chr5.2:8227388-8227407 MS.gene015202:intron 25.0%
!!! TCAAAGTCTTGTTTTGATAT+TGG + chr5.2:8226657-8226676 MS.gene015202:intron 25.0%
!!! TCACTTTTGAGTATTGAAAT+TGG + chr5.2:8227338-8227357 MS.gene015202:intron 25.0%
!!! TCATGATTAGTTTAAAACTG+AGG + chr5.2:8226425-8226444 MS.gene015202:intron 25.0%
!!! TCGTTACTCTAAATTTTTTG+CGG + chr5.2:8226127-8226146 MS.gene015202:intron 25.0%
!!! TGAACAAGGTTTTGATAATT+AGG + chr5.2:8226459-8226478 MS.gene015202:intron 25.0%
!!! TGTATTGGTAATGATCATAT+TGG + chr5.2:8226573-8226592 MS.gene015202:intron 25.0%
AATAAAACATTCAGCAACCT+CGG - chr5.2:8226630-8226649 None:intergenic 30.0%
ACTTAAGGTGATACAGATAA+CGG + chr5.2:8227188-8227207 MS.gene015202:intron 30.0%
AGAGTTTACAAGCAAAATAC+CGG - chr5.2:8227318-8227337 None:intergenic 30.0%
CAACAAACTCAAAATCACTA+AGG + chr5.2:8225882-8225901 MS.gene015202:CDS 30.0%
GAAAATTGAATCGGAGAAAT+TGG - chr5.2:8225628-8225647 None:intergenic 30.0%
GAATTCATTCAAATGCTTTG+AGG + chr5.2:8226396-8226415 MS.gene015202:intron 30.0%
GATACTGGTGATAATTATGT+TGG + chr5.2:8226761-8226780 MS.gene015202:intron 30.0%
TACTGTGATTCTGTTAATTC+TGG + chr5.2:8226086-8226105 MS.gene015202:CDS 30.0%
TGAAAATTAGGGTTTACGAT+TGG + chr5.2:8226342-8226361 MS.gene015202:intron 30.0%
TGAGATGATTCAGAATTACA+AGG + chr5.2:8225843-8225862 MS.gene015202:CDS 30.0%
! GTTTGATTAGTTCAAAACTG+AGG + chr5.2:8226709-8226728 MS.gene015202:intron 30.0%
! TGGATTTGAGGATTTAAGTT+TGG + chr5.2:8226692-8226711 MS.gene015202:intron 30.0%
!! AATTTTGTTTAGGCTTGTTC+TGG + chr5.2:8225736-8225755 MS.gene015202:intron 30.0%
!!! TATTTTGTAATTGACTTGGC+TGG + chr5.2:8226829-8226848 MS.gene015202:intron 30.0%
!!! TTGAAGTCTTGTTTTGATAC+TGG + chr5.2:8226746-8226765 MS.gene015202:intron 30.0%
AGGTTACTGAATGTTGAACA+AGG + chr5.2:8226445-8226464 MS.gene015202:intron 35.0%
ATCAAGAAGCTGACAATGAA+CGG - chr5.2:8225764-8225783 None:intergenic 35.0%
ATGAACTCCAGATTATCCAA+CGG - chr5.2:8226050-8226069 None:intergenic 35.0%
GCTTGATAAATTCTAAACCG+AGG + chr5.2:8226610-8226629 MS.gene015202:intron 35.0%
GTGCATAGATCTAACACTTA+AGG + chr5.2:8227173-8227192 MS.gene015202:intron 35.0%
GTTTCGAATGTTCACCATAA+CGG + chr5.2:8227644-8227663 MS.gene015202:CDS 35.0%
TCGAAATTCACCTTATGCAT+CGG - chr5.2:8225808-8225827 None:intergenic 35.0%
TCGTCTAGGAGACAAATTAT+TGG - chr5.2:8227612-8227631 None:intergenic 35.0%
TGATGCTAATCTTAATTGCG+TGG + chr5.2:8226179-8226198 MS.gene015202:intron 35.0%
TTCCTTCTCAAGACTATCAA+TGG - chr5.2:8227226-8227245 None:intergenic 35.0%
TTGTATGCTACTGATGACAA+TGG + chr5.2:8227434-8227453 MS.gene015202:CDS 35.0%
TTTCGAATGTTCACCATAAC+GGG + chr5.2:8227645-8227664 MS.gene015202:CDS 35.0%
! ATAATCTGGAGTTCATGCAA+TGG + chr5.2:8226054-8226073 MS.gene015202:CDS 35.0%
! ATAATTTGTCTCCTAGACGA+AGG + chr5.2:8227612-8227631 MS.gene015202:CDS 35.0%
! ATCCATTGATAGTCTTGAGA+AGG + chr5.2:8227221-8227240 MS.gene015202:CDS 35.0%
! TCAGTTATAATCCTTTGGAG+AGG + chr5.2:8226869-8226888 MS.gene015202:intron 35.0%
! TTGATTTTCGCAGCATATTG+AGG + chr5.2:8226001-8226020 MS.gene015202:intron 35.0%
!! GAAGTGTCTTGTTGTTGTAT+TGG + chr5.2:8226558-8226577 MS.gene015202:intron 35.0%
AATTGGAACCTCTTCGACTT+TGG - chr5.2:8225611-8225630 None:intergenic 40.0%
AGTACCTGTTGATCATATGC+AGG - chr5.2:8227102-8227121 None:intergenic 40.0%
GAGTTGAATTGATCCAAGAG+AGG - chr5.2:8225573-8225592 None:intergenic 40.0%
TACTGCAAACCATGCAAATC+CGG + chr5.2:8227026-8227045 MS.gene015202:CDS 40.0%
TCCTGAAGTAGAACATTCAC+CGG + chr5.2:8227296-8227315 MS.gene015202:CDS 40.0%
TGATGACAATGGATCTGAGT+TGG + chr5.2:8227445-8227464 MS.gene015202:CDS 40.0%
TGGAATTGTTCCGATGCATA+AGG + chr5.2:8225795-8225814 MS.gene015202:CDS 40.0%
TTATGCATCGGAACAATTCC+AGG - chr5.2:8225796-8225815 None:intergenic 40.0%
AAAGAACTTTGCCAACCCTG+AGG + chr5.2:8227571-8227590 MS.gene015202:CDS 45.0%
ACACTCTCAACCCTCAAACA+AGG + chr5.2:8226942-8226961 MS.gene015202:CDS 45.0%
ACATCAGAAAGCCTTCGTCT+AGG - chr5.2:8227626-8227645 None:intergenic 45.0%
ACCGGTGAATGTTCTACTTC+AGG - chr5.2:8227300-8227319 None:intergenic 45.0%
AGCTCCTGCATATGATCAAC+AGG + chr5.2:8227095-8227114 MS.gene015202:CDS 45.0%
AGGAAGACCGTTGGATAATC+TGG + chr5.2:8226040-8226059 MS.gene015202:CDS 45.0%
ATCATTCCTTCGAGCAGTGT+GGG - chr5.2:8227001-8227020 None:intergenic 45.0%
ATGGATGCTGCATACTTCGT+CGG + chr5.2:8225535-8225554 MS.gene015202:CDS 45.0%
CAATCTCTCCAAAGTCGAAG+AGG + chr5.2:8225600-8225619 MS.gene015202:CDS 45.0%
CACTCTCAACCCTCAAACAA+GGG + chr5.2:8226943-8226962 MS.gene015202:CDS 45.0%
CTGTTAATTCTGGACAGCAC+AGG + chr5.2:8226096-8226115 MS.gene015202:CDS 45.0%
GCATATTGAGGTTAGCAAGC+TGG + chr5.2:8226013-8226032 MS.gene015202:intron 45.0%
GGCGACGAACATTGGAATAA+TGG + chr5.2:8225516-8225535 MS.gene015202:CDS 45.0%
TCCTCAGAAACCTCAGCAAT+GGG - chr5.2:8227524-8227543 None:intergenic 45.0%
! AGTAGAACCACCCTTGTTTG+AGG - chr5.2:8226956-8226975 None:intergenic 45.0%
! GCAGATCTGAAATCCTCTCT+TGG + chr5.2:8225557-8225576 MS.gene015202:CDS 45.0%
! GTAGAACCACCCTTGTTTGA+GGG - chr5.2:8226955-8226974 None:intergenic 45.0%
! TATGCTTACTGCTGGTCTAC+AGG + chr5.2:8227481-8227500 MS.gene015202:CDS 45.0%
AATCTTCCCACACTGCTCGA+AGG + chr5.2:8226992-8227011 MS.gene015202:CDS 50.0%
CACATCTCTCTCCTCTCCAA+AGG - chr5.2:8226883-8226902 None:intergenic 50.0%
CATCATTCCTTCGAGCAGTG+TGG - chr5.2:8227002-8227021 None:intergenic 50.0%
CCTCAGAAACCTCAGCAATG+GGG - chr5.2:8227523-8227542 None:intergenic 50.0%
CGGAACAATTCCAGGATGAG+CGG - chr5.2:8225788-8225807 None:intergenic 50.0%
CTCCTCAGAAACCTCAGCAA+TGG - chr5.2:8227525-8227544 None:intergenic 50.0%
GAGGTTAGCAAGCTGGTGAA+AGG + chr5.2:8226020-8226039 MS.gene015202:CDS 50.0%
GCTCAAGCTATGCTTACTGC+TGG + chr5.2:8227473-8227492 MS.gene015202:CDS 50.0%
TCATGAGAGGTGACCCGTTA+TGG - chr5.2:8227661-8227680 None:intergenic 50.0%
TCTCAACCCTCAAACAAGGG+TGG + chr5.2:8226946-8226965 MS.gene015202:CDS 50.0%
TGCAAACCATGCAAATCCGG+TGG + chr5.2:8227029-8227048 MS.gene015202:CDS 50.0%
TTGCAACCACCGGATTTGCA+TGG - chr5.2:8227038-8227057 None:intergenic 50.0%
! AGGGTGGTTCTACTTCACAC+AGG + chr5.2:8226962-8226981 MS.gene015202:CDS 50.0%
! CTAGCAGCTTTTGCAACCAC+CGG - chr5.2:8227048-8227067 None:intergenic 50.0%
ACCTCAGCAATGGGGCTCAA+TGG - chr5.2:8227515-8227534 None:intergenic 55.0%
AGCAGCATCAACCTCAGGGT+TGG - chr5.2:8227585-8227604 None:intergenic 55.0%
CCCCATTGCTGAGGTTTCTG+AGG + chr5.2:8227520-8227539 MS.gene015202:CDS 55.0%
CGAGCAGTGTGGGAAGATTG+AGG - chr5.2:8226991-8227010 None:intergenic 55.0%
CGGTGGTTGCAAAAGCTGCT+AGG + chr5.2:8227046-8227065 MS.gene015202:CDS 55.0%
CTTCTTGATGCCGCTCATCC+TGG + chr5.2:8225775-8225794 MS.gene015202:CDS 55.0%
GAGAGGAGAGAGATGTGCAG+GGG + chr5.2:8226886-8226905 MS.gene015202:CDS 55.0%
GCAGTGTGGGAAGATTGAGG+AGG - chr5.2:8226988-8227007 None:intergenic 55.0%
GCTGGTGAAAGGAAGACCGT+TGG + chr5.2:8226031-8226050 MS.gene015202:CDS 55.0%
GGAGAGGAGAGAGATGTGCA+GGG + chr5.2:8226885-8226904 MS.gene015202:CDS 55.0%
TGCCAGCAGCATCAACCTCA+GGG - chr5.2:8227589-8227608 None:intergenic 55.0%
TGGAGAGGAGAGAGATGTGC+AGG + chr5.2:8226884-8226903 MS.gene015202:CDS 55.0%
!! AACCCTGAGGTTGATGCTGC+TGG + chr5.2:8227584-8227603 MS.gene015202:CDS 55.0%
AGAGAGATGTGCAGGGGAGG+AGG + chr5.2:8226892-8226911 MS.gene015202:CDS 60.0%
AGCTGCAGCAACAGCAGCGA+CGG - chr5.2:8227079-8227098 None:intergenic 60.0%
AGGAGAGAGATGTGCAGGGG+AGG + chr5.2:8226889-8226908 MS.gene015202:CDS 60.0%
GCCATTGAGCCCCATTGCTG+AGG + chr5.2:8227511-8227530 MS.gene015202:CDS 60.0%
GTGCCAGCAGCATCAACCTC+AGG - chr5.2:8227590-8227609 None:intergenic 60.0%
GAGATGTGCAGGGGAGGAGG+AGG + chr5.2:8226895-8226914 MS.gene015202:CDS 65.0%
GCAACAGCAGCGACGGCAGC+AGG - chr5.2:8227072-8227091 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 8225514 8227685 8225514 ID=MS.gene015202
chr5.2 mRNA 8225514 8227685 8225514 ID=MS.gene015202.t1;Parent=MS.gene015202
chr5.2 exon 8225514 8225621 8225514 ID=MS.gene015202.t1.exon1;Parent=MS.gene015202.t1
chr5.2 CDS 8225514 8225621 8225514 ID=cds.MS.gene015202.t1;Parent=MS.gene015202.t1
chr5.2 exon 8225748 8225903 8225748 ID=MS.gene015202.t1.exon2;Parent=MS.gene015202.t1
chr5.2 CDS 8225748 8225903 8225748 ID=cds.MS.gene015202.t1;Parent=MS.gene015202.t1
chr5.2 exon 8226014 8226117 8226014 ID=MS.gene015202.t1.exon3;Parent=MS.gene015202.t1
chr5.2 CDS 8226014 8226117 8226014 ID=cds.MS.gene015202.t1;Parent=MS.gene015202.t1
chr5.2 exon 8226873 8227116 8226873 ID=MS.gene015202.t1.exon4;Parent=MS.gene015202.t1
chr5.2 CDS 8226873 8227116 8226873 ID=cds.MS.gene015202.t1;Parent=MS.gene015202.t1
chr5.2 exon 8227204 8227317 8227204 ID=MS.gene015202.t1.exon5;Parent=MS.gene015202.t1
chr5.2 CDS 8227204 8227317 8227204 ID=cds.MS.gene015202.t1;Parent=MS.gene015202.t1
chr5.2 exon 8227410 8227685 8227410 ID=MS.gene015202.t1.exon6;Parent=MS.gene015202.t1
chr5.2 CDS 8227410 8227685 8227410 ID=cds.MS.gene015202.t1;Parent=MS.gene015202.t1
Gene Sequence

>MS.gene015202

ATGGCGACGAACATTGGAATAATGGATGCTGCATACTTCGTCGGCAGATCTGAAATCCTCTCTTGGATCAATTCAACTCTTCAACTCAATCTCTCCAAAGTCGAAGAGGTTCCAATTTCTCCGATTCAATTTTCTTCAATTTTCATCGTTTTTCGTTGATTTTGTTTTAGGTTTTTGATTTACTGTTAATAATTTGATAGATCTGATTTTGTTGAATTGTGAAATTTTGTTTAGGCTTGTTCTGGTGCCGTTCATTGTCAGCTTCTTGATGCCGCTCATCCTGGAATTGTTCCGATGCATAAGGTGAATTTCGATGCGAAGAATGAGTATGAGATGATTCAGAATTACAAGGTTCTTCAAGATGTTTTCAACAAACTCAAAATCACTAAGGTAAATTTCGATTTTCGGTTGCGTTCTGATTTTCGTTTTTCTTTGAGATCTTGCGATTTTTCCGATTCGTGATTTTCTTAATTTTTTTATTTTGATTTTGATTTTCGCAGCATATTGAGGTTAGCAAGCTGGTGAAAGGAAGACCGTTGGATAATCTGGAGTTCATGCAATGGATGAAACGATACTGTGATTCTGTTAATTCTGGACAGCACAGGTAATTTAATCGTTACTCTAAATTTTTTGCGGATGCGTTTATTGTTTCTGTTGAAAATTTCTGATGCTAATCTTAATTGCGTGGAATTGTTATCTTTGAATTTGATAATTAGGTTTTATGATTGGAAATTTGTAATTCTACTGACGAACATATGTGATTAGAGTTAAAATTCAAATTTAATTTCATATTCAAATGTTTTAATGAAAATTTTCTGGATGAAATCTTGAAAATTAGGGTTTACGATTGGAGTTCTGTAATTCTGCTGATATATACGATTAGAATTCATTCAAATGCTTTGAGGATTGAATCATGATTAGTTTAAAACTGAGGTTACTGAATGTTGAACAAGGTTTTGATAATTAGGTTTTACAAGTCTATTGATGACGATATATGATTAGAATTCAAGTTCAGTTTTATATGTCTTAACTCTTAACTGTATCGAAGTGTCTTGTTGTTGTATTGGTAATGATCATATTGGATTTGAGGATTTAAGCTTGATAAATTCTAAACCGAGGTTGCTGAATGTTTTATTGAATGCGTCAAAGTCTTGTTTTGATATTGGTATTAATTATATTGGATTTGAGGATTTAAGTTTGATTAGTTCAAAACTGAGGTTGTTTTAAATGTATTGAAGTCTTGTTTTGATACTGGTGATAATTATGTTGGATTTGAGGATTTAAGTTTGGTTAGTTCAAAATTAAGGTTGCTGCATATTTTGTAATTGACTTGGCTGGCTTATGTGTTTCTTGTTTCAGTTATAATCCTTTGGAGAGGAGAGAGATGTGCAGGGGAGGAGGAGGAAGAGAAGTGAGTAAAAAATCTGCACACTCTCAACCCTCAAACAAGGGTGGTTCTACTTCACACAGGCCTCCTCAATCTTCCCACACTGCTCGAAGGAATGATGTGTCTACTGCAAACCATGCAAATCCGGTGGTTGCAAAAGCTGCTAGGCCTGCTGCCGTCGCTGCTGTTGCTGCAGCTCCTGCATATGATCAACAGGTACTTTGTTTTTATCATCTCATAGATGTTATCAAGTGATTTATGAATTATTTTAAGTGCATAGATCTAACACTTAAGGTGATACAGATAACGGAATTGAAGTTATCCATTGATAGTCTTGAGAAGGAACGAGATTTTTACTTTGCAAAACTGAGGGATATTGAGATACTTTGTCAGACTCCTGAAGTAGAACATTCACCGGTATTTTGCTTGTAAACTCTTCACTTTTGAGTATTGAAATTGGTAATTGTTGATGGGTTACTGATGAAATGTGAATTTTGTTTATGATTCAGGTTTTTGCAGCAATACAGAAGATATTGTATGCTACTGATGACAATGGATCTGAGTTGGAAGAAGCTCAAGCTATGCTTACTGCTGGTCTACAGGAAGCAGAGCCATTGAGCCCCATTGCTGAGGTTTCTGAGGAGAAGAGCAGTTCTGAAAATCTCAAGAGAAAGAACTTTGCCAACCCTGAGGTTGATGCTGCTGGCACCAATAATTTGTCTCCTAGACGAAGGCTTTCTGATGTTTCGAATGTTCACCATAACGGGTCACCTCTCATGATCTGA
Protein sequence

>MS.gene015202.t1

MATNIGIMDAAYFVGRSEILSWINSTLQLNLSKVEEACSGAVHCQLLDAAHPGIVPMHKVNFDAKNEYEMIQNYKVLQDVFNKLKITKHIEVSKLVKGRPLDNLEFMQWMKRYCDSVNSGQHSYNPLERREMCRGGGGREVSKKSAHSQPSNKGGSTSHRPPQSSHTARRNDVSTANHANPVVAKAARPAAVAAVAAAPAYDQQITELKLSIDSLEKERDFYFAKLRDIEILCQTPEVEHSPVFAAIQKILYATDDNGSELEEAQAMLTAGLQEAEPLSPIAEVSEEKSSSENLKRKNFANPEVDAAGTNNLSPRRRLSDVSNVHHNGSPLMI