AlfalfaGEDB | MS.gene09543

M. sativa cultivar XinJiangDaYe / MS.gene09543

KEGG: K10436
GO: GO:0003674 GO:0005488 GO:0005515 GO:0008017 GO:0008092 GO:0015631
PFAM: PF00307.34 PF03271.20

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09543.t1	XP_003611667.2	95.5	334	13	2	1	333	1	333	8.60E-162	579.7

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09543.t1	Q9FGQ6	58.9	338	122	4	1	332	1	327	7.5e-90	332.0

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09543.t1	G7K588	95.5	334	13	2	1	333	1	333	6.2e-162	579.7

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049397	MS.gene09543	0.850954	1.22E-60	-1.69E-46
MS.gene049596	MS.gene09543	0.809718	1.65E-50	-1.69E-46
MS.gene049622	MS.gene09543	0.852333	4.94E-61	-1.69E-46
MS.gene049989	MS.gene09543	0.893545	5.69E-75	-1.69E-46
MS.gene050297	MS.gene09543	0.913538	5.48E-84	-1.69E-46
MS.gene051094	MS.gene09543	0.82824	1.00E-54	-1.69E-46
MS.gene05124	MS.gene09543	0.812507	4.10E-51	-1.69E-46
MS.gene051263	MS.gene09543	0.844554	7.04E-59	-1.69E-46
MS.gene051629	MS.gene09543	0.851566	8.16E-61	-1.69E-46
MS.gene051742	MS.gene09543	0.836887	7.19E-57	-1.69E-46
MS.gene051816	MS.gene09543	0.825533	4.45E-54	-1.69E-46
MS.gene051955	MS.gene09543	0.88554	7.45E-72	-1.69E-46
MS.gene052143	MS.gene09543	0.867683	1.14E-65	-1.69E-46
MS.gene052308	MS.gene09543	0.863626	2.18E-64	-1.69E-46
MS.gene052367	MS.gene09543	0.928288	3.57E-92	-1.69E-46
MS.gene053173	MS.gene09543	0.850204	1.98E-60	-1.69E-46
MS.gene053348	MS.gene09543	0.837293	5.66E-57	-1.69E-46
MS.gene053416	MS.gene09543	0.875717	2.47E-68	-1.69E-46
MS.gene053417	MS.gene09543	0.877049	8.58E-69	-1.69E-46
MS.gene05369	MS.gene09543	0.852722	3.83E-61	-1.69E-46
MS.gene054551	MS.gene09543	0.856868	2.40E-62	-1.69E-46
MS.gene054552	MS.gene09543	0.819512	1.12E-52	-1.69E-46
MS.gene054593	MS.gene09543	0.850697	1.44E-60	-1.69E-46
MS.gene054643	MS.gene09543	0.834752	2.50E-56	-1.69E-46
MS.gene054885	MS.gene09543	0.80302	4.25E-49	-1.69E-46
MS.gene055308	MS.gene09543	0.881318	2.65E-70	-1.69E-46
MS.gene055411	MS.gene09543	0.8425	2.49E-58	-1.69E-46
MS.gene055578	MS.gene09543	0.893374	6.67E-75	-1.69E-46
MS.gene055579	MS.gene09543	0.84806	7.79E-60	-1.69E-46
MS.gene055957	MS.gene09543	0.910653	1.47E-82	-1.69E-46
MS.gene056041	MS.gene09543	0.932508	7.66E-95	-1.69E-46
MS.gene056042	MS.gene09543	0.850304	1.85E-60	-1.69E-46
MS.gene056335	MS.gene09543	0.800159	1.64E-48	-1.69E-46
MS.gene05640	MS.gene09543	0.862707	4.19E-64	-1.69E-46
MS.gene056526	MS.gene09543	0.863581	2.25E-64	-1.69E-46
MS.gene056528	MS.gene09543	0.818421	1.98E-52	-1.69E-46
MS.gene057358	MS.gene09543	0.812296	4.55E-51	-1.69E-46
MS.gene057359	MS.gene09543	0.800375	1.48E-48	-1.69E-46
MS.gene057458	MS.gene09543	0.865154	7.25E-65	-1.69E-46
MS.gene057483	MS.gene09543	0.830895	2.27E-55	-1.69E-46
MS.gene058128	MS.gene09543	0.805712	1.17E-49	-1.69E-46
MS.gene058196	MS.gene09543	0.868945	4.48E-66	-1.69E-46
MS.gene058197	MS.gene09543	0.847829	9.03E-60	-1.69E-46
MS.gene058198	MS.gene09543	0.849907	2.39E-60	-1.69E-46
MS.gene058818	MS.gene09543	0.847279	1.28E-59	-1.69E-46
MS.gene058827	MS.gene09543	0.830991	2.15E-55	-1.69E-46
MS.gene058828	MS.gene09543	0.802619	5.15E-49	-1.69E-46
MS.gene058853	MS.gene09543	0.852294	5.07E-61	-1.69E-46
MS.gene059300	MS.gene09543	0.8736	1.30E-67	-1.69E-46
MS.gene059553	MS.gene09543	0.85001	2.24E-60	-1.69E-46
MS.gene060473	MS.gene09543	0.927339	1.35E-91	-1.69E-46
MS.gene060565	MS.gene09543	0.924179	9.95E-90	-1.69E-46
MS.gene06057	MS.gene09543	0.876223	1.66E-68	-1.69E-46
MS.gene06064	MS.gene09543	0.820421	6.92E-53	-1.69E-46
MS.gene060825	MS.gene09543	0.826517	2.60E-54	-1.69E-46
MS.gene06093	MS.gene09543	0.855068	8.08E-62	-1.69E-46
MS.gene061099	MS.gene09543	0.898645	4.33E-77	-1.69E-46
MS.gene061260	MS.gene09543	0.928517	2.58E-92	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene78156	MS.gene09543	PPI
MS.gene09543	MS.gene75146	PPI
MS.gene71660	MS.gene09543	PPI
MS.gene58445	MS.gene09543	PPI
MS.gene76850	MS.gene09543	PPI
MS.gene09543	MS.gene50990	PPI
MS.gene071261	MS.gene09543	PPI
MS.gene058013	MS.gene09543	PPI
MS.gene035362	MS.gene09543	PPI
MS.gene93131	MS.gene09543	PPI
MS.gene009372	MS.gene09543	PPI
MS.gene77822	MS.gene09543	PPI
MS.gene003428	MS.gene09543	PPI
MS.gene00146	MS.gene09543	PPI
MS.gene51515	MS.gene09543	PPI
MS.gene53708	MS.gene09543	PPI
MS.gene09543	MS.gene005125	PPI
MS.gene09543	MS.gene77531	PPI
MS.gene79893	MS.gene09543	PPI
MS.gene09543	MS.gene058245	PPI
MS.gene09543	MS.gene037362	PPI
MS.gene035363	MS.gene09543	PPI
MS.gene029611	MS.gene09543	PPI
MS.gene045765	MS.gene09543	PPI
MS.gene09543	MS.gene75670	PPI
MS.gene09543	MS.gene060311	PPI
MS.gene09543	MS.gene018958	PPI
MS.gene09543	MS.gene79126	PPI
MS.gene09543	MS.gene78481	PPI
MS.gene066551	MS.gene09543	PPI
MS.gene69947	MS.gene09543	PPI
MS.gene55980	MS.gene09543	PPI
MS.gene045358	MS.gene09543	PPI
MS.gene67725	MS.gene09543	PPI
MS.gene041599	MS.gene09543	PPI
MS.gene43992	MS.gene09543	PPI
MS.gene09543	MS.gene90863	PPI
MS.gene067039	MS.gene09543	PPI
MS.gene033134	MS.gene09543	PPI
MS.gene75567	MS.gene09543	PPI
MS.gene000365	MS.gene09543	PPI
MS.gene066552	MS.gene09543	PPI
MS.gene09543	MS.gene029211	PPI
MS.gene045227	MS.gene09543	PPI
MS.gene03589	MS.gene09543	PPI
MS.gene09543	MS.gene041598	PPI
MS.gene41343	MS.gene09543	PPI
MS.gene09543	MS.gene43369	PPI
MS.gene67743	MS.gene09543	PPI
MS.gene037409	MS.gene09543	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09543.t1	MTR_5g016520	96.707	334	9	2	1	333	1	333	0.0	668
MS.gene09543.t1	MTR_0036s0210	58.657	283	94	5	1	276	1	267	1.95e-114	333
MS.gene09543.t1	MTR_4g108330	57.193	285	94	5	1	276	1	266	3.12e-109	320
MS.gene09543.t1	MTR_2072s0010	73.077	52	14	0	37	88	1	52	3.35e-20	82.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09543.t1	AT5G67270	61.494	348	97	10	1	332	1	327	6.06e-142	404
MS.gene09543.t1	AT3G47690	54.915	295	110	5	1	291	1	276	7.85e-112	326
MS.gene09543.t1	AT5G62500	57.194	278	97	5	1	272	1	262	4.63e-108	317

Find 76 sgRNAs with CRISPR-Local

Find 121 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TACTGTGATTCTGTTAATTC+TGG	0.239455	5.2:+8214121	MS.gene09543:CDS
AGGAAGACCGTTGGATAATC+TGG	0.313939	5.2:+8214075	MS.gene09543:CDS
AATTGGAACCTCTTCGACTT+TGG	0.334561	5.2:-8213643	None:intergenic
AGAGAGATGTGCAGGGGAGG+AGG	0.344828	5.2:+8214927	MS.gene09543:CDS
TCCTCAGAAACCTCAGCAAT+GGG	0.351899	5.2:-8215556	None:intergenic
GCAACAGCAGCGACGGCAGC+AGG	0.370156	5.2:-8215104	None:intergenic
GGCGACGAACATTGGAATAA+TGG	0.371602	5.2:+8213551	MS.gene09543:CDS
ACCGGTGAATGTTCTACTTC+AGG	0.375265	5.2:-8215332	None:intergenic
TTTCGAATGTTCACCATAAC+GGG	0.386900	5.2:+8215680	MS.gene09543:CDS
AGCTGCAGCAACAGCAGCGA+CGG	0.391380	5.2:-8215111	None:intergenic
TCGTCTAGGAGACAAATTAT+TGG	0.405029	5.2:-8215644	None:intergenic
TCATGAGAGGTGACCCGTTA+TGG	0.407788	5.2:-8215693	None:intergenic
TTGTTTCAGTTATAATCCTT+TGG	0.411329	5.2:+8214899	MS.gene09543:intron
CTTCTTGATGCCGCTCATCC+TGG	0.411853	5.2:+8213810	MS.gene09543:CDS
GAGATGTGCAGGGGAGGAGG+AGG	0.415206	5.2:+8214930	MS.gene09543:CDS
TTATGCATCGGAACAATTCC+AGG	0.415843	5.2:-8213828	None:intergenic
AACCCTGAGGTTGATGCTGC+TGG	0.418093	5.2:+8215619	MS.gene09543:CDS
AGCTCCTGCATATGATCAAC+AGG	0.424134	5.2:+8215130	MS.gene09543:CDS
AGGAGAGAGATGTGCAGGGG+AGG	0.437578	5.2:+8214924	MS.gene09543:CDS
TGGAGAGGAGAGAGATGTGC+AGG	0.442889	5.2:+8214919	MS.gene09543:CDS
TTCCTTCTCAAGACTATCAA+TGG	0.443572	5.2:-8215258	None:intergenic
TACTGCAAACCATGCAAATC+CGG	0.449249	5.2:+8215061	MS.gene09543:CDS
TATGCTTACTGCTGGTCTAC+AGG	0.461063	5.2:+8215516	MS.gene09543:CDS
GCAGATCTGAAATCCTCTCT+TGG	0.463193	5.2:+8213592	MS.gene09543:CDS
ACCTCAGCAATGGGGCTCAA+TGG	0.463460	5.2:-8215547	None:intergenic
GTTTCGAATGTTCACCATAA+CGG	0.473409	5.2:+8215679	MS.gene09543:CDS
GTGCCAGCAGCATCAACCTC+AGG	0.484253	5.2:-8215622	None:intergenic
GTAGAACCACCCTTGTTTGA+GGG	0.498601	5.2:-8214987	None:intergenic
AGTAGAACCACCCTTGTTTG+AGG	0.504441	5.2:-8214988	None:intergenic
CAACAAACTCAAAATCACTA+AGG	0.505654	5.2:+8213917	MS.gene09543:CDS
CTCCTCAGAAACCTCAGCAA+TGG	0.518364	5.2:-8215557	None:intergenic
TGATGACAATGGATCTGAGT+TGG	0.524539	5.2:+8215480	MS.gene09543:CDS
ATCAAGAAGCTGACAATGAA+CGG	0.527675	5.2:-8213796	None:intergenic
CGGTGGTTGCAAAAGCTGCT+AGG	0.530783	5.2:+8215081	MS.gene09543:CDS
CTGTTAATTCTGGACAGCAC+AGG	0.531391	5.2:+8214131	MS.gene09543:CDS
TGGAATTGTTCCGATGCATA+AGG	0.531970	5.2:+8213830	MS.gene09543:CDS
GCATATTGAGGTTAGCAAGC+TGG	0.533221	5.2:+8214048	MS.gene09543:intron
CCCCATTGCTGAGGTTTCTG+AGG	0.538400	5.2:+8215555	MS.gene09543:CDS
AGCAGCATCAACCTCAGGGT+TGG	0.539714	5.2:-8215617	None:intergenic
CACTCTCAACCCTCAAACAA+GGG	0.547676	5.2:+8214978	MS.gene09543:CDS
CGAGCAGTGTGGGAAGATTG+AGG	0.547920	5.2:-8215023	None:intergenic
ATCATTCCTTCGAGCAGTGT+GGG	0.553545	5.2:-8215033	None:intergenic
ATCCATTGATAGTCTTGAGA+AGG	0.556956	5.2:+8215256	MS.gene09543:CDS
TTGCAACCACCGGATTTGCA+TGG	0.557039	5.2:-8215070	None:intergenic
ACACTCTCAACCCTCAAACA+AGG	0.557498	5.2:+8214977	MS.gene09543:CDS
GGAGAGGAGAGAGATGTGCA+GGG	0.562837	5.2:+8214920	MS.gene09543:CDS
GCCATTGAGCCCCATTGCTG+AGG	0.565737	5.2:+8215546	MS.gene09543:CDS
CAATCTCTCCAAAGTCGAAG+AGG	0.568906	5.2:+8213635	MS.gene09543:CDS
CACATCTCTCTCCTCTCCAA+AGG	0.574177	5.2:-8214915	None:intergenic
GAGAGGAGAGAGATGTGCAG+GGG	0.575095	5.2:+8214921	MS.gene09543:CDS
GAGGTTAGCAAGCTGGTGAA+AGG	0.576068	5.2:+8214055	MS.gene09543:CDS
AGTACCTGTTGATCATATGC+AGG	0.577474	5.2:-8215134	None:intergenic
TCGAAATTCACCTTATGCAT+CGG	0.580314	5.2:-8213840	None:intergenic
GGTCACCTCTCATGATCTGA+AGG	0.580315	5.2:+8215701	MS.gene09543:CDS
GCTCAAGCTATGCTTACTGC+TGG	0.581689	5.2:+8215508	MS.gene09543:CDS
ATGGATGCTGCATACTTCGT+CGG	0.586038	5.2:+8213570	MS.gene09543:CDS
ACATCAGAAAGCCTTCGTCT+AGG	0.591311	5.2:-8215658	None:intergenic
TCCTGAAGTAGAACATTCAC+CGG	0.595180	5.2:+8215331	MS.gene09543:CDS
TGAGATGATTCAGAATTACA+AGG	0.599247	5.2:+8213878	MS.gene09543:CDS
TCAGTTATAATCCTTTGGAG+AGG	0.609241	5.2:+8214904	MS.gene09543:intron
GCTGGTGAAAGGAAGACCGT+TGG	0.609936	5.2:+8214066	MS.gene09543:CDS
AATCTTCCCACACTGCTCGA+AGG	0.610802	5.2:+8215027	MS.gene09543:CDS
TGCCAGCAGCATCAACCTCA+GGG	0.613718	5.2:-8215621	None:intergenic
CATCATTCCTTCGAGCAGTG+TGG	0.625952	5.2:-8215034	None:intergenic
CGGAACAATTCCAGGATGAG+CGG	0.629441	5.2:-8213820	None:intergenic
ATAATTTGTCTCCTAGACGA+AGG	0.644751	5.2:+8215647	MS.gene09543:CDS
TGCAAACCATGCAAATCCGG+TGG	0.660574	5.2:+8215064	MS.gene09543:CDS
GAGTTGAATTGATCCAAGAG+AGG	0.661001	5.2:-8213605	None:intergenic
TTGTATGCTACTGATGACAA+TGG	0.664708	5.2:+8215469	MS.gene09543:CDS
ATAATCTGGAGTTCATGCAA+TGG	0.681963	5.2:+8214089	MS.gene09543:CDS
TCTCAACCCTCAAACAAGGG+TGG	0.685605	5.2:+8214981	MS.gene09543:CDS
CCTCAGAAACCTCAGCAATG+GGG	0.699654	5.2:-8215555	None:intergenic
AAAGAACTTTGCCAACCCTG+AGG	0.702193	5.2:+8215606	MS.gene09543:CDS
ATGAACTCCAGATTATCCAA+CGG	0.710109	5.2:-8214082	None:intergenic
AGGGTGGTTCTACTTCACAC+AGG	0.720858	5.2:+8214997	MS.gene09543:CDS
GCAGTGTGGGAAGATTGAGG+AGG	0.731744	5.2:-8215020	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAAATTGAAGAAAATTGAAT+CGG	-	chr5.2:8213672-8213691	None:intergenic	15.0%
!!	GATATTGGTATTAATTATAT+TGG	+	chr5.2:8214707-8214726	MS.gene09543:intron	15.0%
!!	TATTAATTATATTGGATTTG+AGG	+	chr5.2:8214715-8214734	MS.gene09543:intron	15.0%
!!!	ATGTTTTAATGAAAATTTTC+TGG	+	chr5.2:8214345-8214364	MS.gene09543:intron	15.0%
!!!	TATCTTTGAATTTGATAATT+AGG	+	chr5.2:8214243-8214262	MS.gene09543:intron	15.0%
!!	AAATTAAGAAAATCACGAAT+CGG	-	chr5.2:8214003-8214022	None:intergenic	20.0%
!!!	TGAATTGTGAAATTTTGTTT+AGG	+	chr5.2:8213761-8213780	MS.gene09543:intron	20.0%
!!!	TGATAATTAGGTTTTATGAT+TGG	+	chr5.2:8214255-8214274	MS.gene09543:intron	20.0%
!!!	TTTTTCGTTGATTTTGTTTT+AGG	+	chr5.2:8213697-8213716	MS.gene09543:intron	20.0%
!	GGATGAAATCTTGAAAATTA+GGG	+	chr5.2:8214366-8214385	MS.gene09543:intron	25.0%
!	TAATGATCATATTGGATTTG+AGG	+	chr5.2:8214616-8214635	MS.gene09543:intron	25.0%
!	TGATAATTATGTTGGATTTG+AGG	+	chr5.2:8214804-8214823	MS.gene09543:intron	25.0%
!	TGGATGAAATCTTGAAAATT+AGG	+	chr5.2:8214365-8214384	MS.gene09543:intron	25.0%
!	TTGTTTCAGTTATAATCCTT+TGG	+	chr5.2:8214899-8214918	MS.gene09543:intron	25.0%
!!	ATTTTTACTTTGCAAAACTG+AGG	+	chr5.2:8215285-8215304	MS.gene09543:CDS	25.0%
!!	CTAAGGTAAATTTCGATTTT+CGG	+	chr5.2:8213934-8213953	MS.gene09543:intron	25.0%
!!	GTTTGGTTAGTTCAAAATTA+AGG	+	chr5.2:8214833-8214852	MS.gene09543:intron	25.0%
!!	TGAAATTGGTAATTGTTGAT+GGG	+	chr5.2:8215387-8215406	MS.gene09543:intron	25.0%
!!	TGCATATTTTGTAATTGACT+TGG	+	chr5.2:8214860-8214879	MS.gene09543:intron	25.0%
!!	TTGAAATTGGTAATTGTTGA+TGG	+	chr5.2:8215386-8215405	MS.gene09543:intron	25.0%
!!	TTTTTACTTTGCAAAACTGA+GGG	+	chr5.2:8215286-8215305	MS.gene09543:CDS	25.0%
!!!	GTGAATTTTGTTTATGATTC+AGG	+	chr5.2:8215423-8215442	MS.gene09543:intron	25.0%
!!!	TCAAAGTCTTGTTTTGATAT+TGG	+	chr5.2:8214692-8214711	MS.gene09543:intron	25.0%
!!!	TCACTTTTGAGTATTGAAAT+TGG	+	chr5.2:8215373-8215392	MS.gene09543:intron	25.0%
!!!	TCATGATTAGTTTAAAACTG+AGG	+	chr5.2:8214460-8214479	MS.gene09543:intron	25.0%
!!!	TCGTTACTCTAAATTTTTTG+CGG	+	chr5.2:8214162-8214181	MS.gene09543:intron	25.0%
!!!	TGAACAAGGTTTTGATAATT+AGG	+	chr5.2:8214494-8214513	MS.gene09543:intron	25.0%
!!!	TGTATTGGTAATGATCATAT+TGG	+	chr5.2:8214608-8214627	MS.gene09543:intron	25.0%
	AATAAAACATTCAGCAACCT+CGG	-	chr5.2:8214665-8214684	None:intergenic	30.0%
	ACTTAAGGTGATACAGATAA+CGG	+	chr5.2:8215223-8215242	MS.gene09543:intron	30.0%
	AGAGTTTACAAGCAAAATAC+CGG	-	chr5.2:8215353-8215372	None:intergenic	30.0%
	CAACAAACTCAAAATCACTA+AGG	+	chr5.2:8213917-8213936	MS.gene09543:CDS	30.0%
	GAAAATTGAATCGGAGAAAT+TGG	-	chr5.2:8213663-8213682	None:intergenic	30.0%
	GAATTCATTCAAATGCTTTG+AGG	+	chr5.2:8214431-8214450	MS.gene09543:intron	30.0%
	GATACTGGTGATAATTATGT+TGG	+	chr5.2:8214796-8214815	MS.gene09543:intron	30.0%
	TACTGTGATTCTGTTAATTC+TGG	+	chr5.2:8214121-8214140	MS.gene09543:CDS	30.0%
	TGAAAATTAGGGTTTACGAT+TGG	+	chr5.2:8214377-8214396	MS.gene09543:intron	30.0%
	TGAGATGATTCAGAATTACA+AGG	+	chr5.2:8213878-8213897	MS.gene09543:CDS	30.0%
!	GTTTGATTAGTTCAAAACTG+AGG	+	chr5.2:8214744-8214763	MS.gene09543:intron	30.0%
!	TGGATTTGAGGATTTAAGTT+TGG	+	chr5.2:8214727-8214746	MS.gene09543:intron	30.0%
!!	AATTTTGTTTAGGCTTGTTC+TGG	+	chr5.2:8213771-8213790	MS.gene09543:intron	30.0%
!!!	TATTTTGTAATTGACTTGGC+TGG	+	chr5.2:8214864-8214883	MS.gene09543:intron	30.0%
!!!	TTGAAGTCTTGTTTTGATAC+TGG	+	chr5.2:8214781-8214800	MS.gene09543:intron	30.0%
	AGGTTACTGAATGTTGAACA+AGG	+	chr5.2:8214480-8214499	MS.gene09543:intron	35.0%
	ATCAAGAAGCTGACAATGAA+CGG	-	chr5.2:8213799-8213818	None:intergenic	35.0%
	ATGAACTCCAGATTATCCAA+CGG	-	chr5.2:8214085-8214104	None:intergenic	35.0%
	GCTTGATAAATTCTAAACCG+AGG	+	chr5.2:8214645-8214664	MS.gene09543:intron	35.0%
	GTGCATAGATCTAACACTTA+AGG	+	chr5.2:8215208-8215227	MS.gene09543:intron	35.0%
	GTTTCGAATGTTCACCATAA+CGG	+	chr5.2:8215679-8215698	MS.gene09543:CDS	35.0%
	TCGAAATTCACCTTATGCAT+CGG	-	chr5.2:8213843-8213862	None:intergenic	35.0%
	TCGTCTAGGAGACAAATTAT+TGG	-	chr5.2:8215647-8215666	None:intergenic	35.0%
	TGATGCTAATCTTAATTGCG+TGG	+	chr5.2:8214214-8214233	MS.gene09543:intron	35.0%
	TTCCTTCTCAAGACTATCAA+TGG	-	chr5.2:8215261-8215280	None:intergenic	35.0%
	TTGTATGCTACTGATGACAA+TGG	+	chr5.2:8215469-8215488	MS.gene09543:CDS	35.0%
	TTTCGAATGTTCACCATAAC+GGG	+	chr5.2:8215680-8215699	MS.gene09543:CDS	35.0%
!	ATAATCTGGAGTTCATGCAA+TGG	+	chr5.2:8214089-8214108	MS.gene09543:CDS	35.0%
!	ATAATTTGTCTCCTAGACGA+AGG	+	chr5.2:8215647-8215666	MS.gene09543:CDS	35.0%
!	ATCCATTGATAGTCTTGAGA+AGG	+	chr5.2:8215256-8215275	MS.gene09543:CDS	35.0%
!	TCAGTTATAATCCTTTGGAG+AGG	+	chr5.2:8214904-8214923	MS.gene09543:intron	35.0%
!	TTGATTTTCGCAGCATATTG+AGG	+	chr5.2:8214036-8214055	MS.gene09543:intron	35.0%
!!	GAAGTGTCTTGTTGTTGTAT+TGG	+	chr5.2:8214593-8214612	MS.gene09543:intron	35.0%
	AATTGGAACCTCTTCGACTT+TGG	-	chr5.2:8213646-8213665	None:intergenic	40.0%
	AGTACCTGTTGATCATATGC+AGG	-	chr5.2:8215137-8215156	None:intergenic	40.0%
	GAGTTGAATTGATCCAAGAG+AGG	-	chr5.2:8213608-8213627	None:intergenic	40.0%
	TACTGCAAACCATGCAAATC+CGG	+	chr5.2:8215061-8215080	MS.gene09543:CDS	40.0%
	TCCTGAAGTAGAACATTCAC+CGG	+	chr5.2:8215331-8215350	MS.gene09543:CDS	40.0%
	TGATGACAATGGATCTGAGT+TGG	+	chr5.2:8215480-8215499	MS.gene09543:CDS	40.0%
	TGGAATTGTTCCGATGCATA+AGG	+	chr5.2:8213830-8213849	MS.gene09543:CDS	40.0%
	TTATGCATCGGAACAATTCC+AGG	-	chr5.2:8213831-8213850	None:intergenic	40.0%
	AAAGAACTTTGCCAACCCTG+AGG	+	chr5.2:8215606-8215625	MS.gene09543:CDS	45.0%
	ACACTCTCAACCCTCAAACA+AGG	+	chr5.2:8214977-8214996	MS.gene09543:CDS	45.0%
	ACATCAGAAAGCCTTCGTCT+AGG	-	chr5.2:8215661-8215680	None:intergenic	45.0%
	ACCGGTGAATGTTCTACTTC+AGG	-	chr5.2:8215335-8215354	None:intergenic	45.0%
	AGCTCCTGCATATGATCAAC+AGG	+	chr5.2:8215130-8215149	MS.gene09543:CDS	45.0%
	AGGAAGACCGTTGGATAATC+TGG	+	chr5.2:8214075-8214094	MS.gene09543:CDS	45.0%
	ATCATTCCTTCGAGCAGTGT+GGG	-	chr5.2:8215036-8215055	None:intergenic	45.0%
	ATGGATGCTGCATACTTCGT+CGG	+	chr5.2:8213570-8213589	MS.gene09543:CDS	45.0%
	CAATCTCTCCAAAGTCGAAG+AGG	+	chr5.2:8213635-8213654	MS.gene09543:CDS	45.0%
	CACTCTCAACCCTCAAACAA+GGG	+	chr5.2:8214978-8214997	MS.gene09543:CDS	45.0%
	CTGTTAATTCTGGACAGCAC+AGG	+	chr5.2:8214131-8214150	MS.gene09543:CDS	45.0%
	GCATATTGAGGTTAGCAAGC+TGG	+	chr5.2:8214048-8214067	MS.gene09543:intron	45.0%
	GGCGACGAACATTGGAATAA+TGG	+	chr5.2:8213551-8213570	MS.gene09543:CDS	45.0%
	TCCTCAGAAACCTCAGCAAT+GGG	-	chr5.2:8215559-8215578	None:intergenic	45.0%
!	AGTAGAACCACCCTTGTTTG+AGG	-	chr5.2:8214991-8215010	None:intergenic	45.0%
!	GCAGATCTGAAATCCTCTCT+TGG	+	chr5.2:8213592-8213611	MS.gene09543:CDS	45.0%
!	GTAGAACCACCCTTGTTTGA+GGG	-	chr5.2:8214990-8215009	None:intergenic	45.0%
!	TATGCTTACTGCTGGTCTAC+AGG	+	chr5.2:8215516-8215535	MS.gene09543:CDS	45.0%
	AATCTTCCCACACTGCTCGA+AGG	+	chr5.2:8215027-8215046	MS.gene09543:CDS	50.0%
	CACATCTCTCTCCTCTCCAA+AGG	-	chr5.2:8214918-8214937	None:intergenic	50.0%
	CATCATTCCTTCGAGCAGTG+TGG	-	chr5.2:8215037-8215056	None:intergenic	50.0%
	CCTCAGAAACCTCAGCAATG+GGG	-	chr5.2:8215558-8215577	None:intergenic	50.0%
	CGGAACAATTCCAGGATGAG+CGG	-	chr5.2:8213823-8213842	None:intergenic	50.0%
	CTCCTCAGAAACCTCAGCAA+TGG	-	chr5.2:8215560-8215579	None:intergenic	50.0%
	GAGGTTAGCAAGCTGGTGAA+AGG	+	chr5.2:8214055-8214074	MS.gene09543:CDS	50.0%
	GCTCAAGCTATGCTTACTGC+TGG	+	chr5.2:8215508-8215527	MS.gene09543:CDS	50.0%
	TCATGAGAGGTGACCCGTTA+TGG	-	chr5.2:8215696-8215715	None:intergenic	50.0%
	TCTCAACCCTCAAACAAGGG+TGG	+	chr5.2:8214981-8215000	MS.gene09543:CDS	50.0%
	TGCAAACCATGCAAATCCGG+TGG	+	chr5.2:8215064-8215083	MS.gene09543:CDS	50.0%
	TTGCAACCACCGGATTTGCA+TGG	-	chr5.2:8215073-8215092	None:intergenic	50.0%
!	AGGGTGGTTCTACTTCACAC+AGG	+	chr5.2:8214997-8215016	MS.gene09543:CDS	50.0%
!	CTAGCAGCTTTTGCAACCAC+CGG	-	chr5.2:8215083-8215102	None:intergenic	50.0%
	ACCTCAGCAATGGGGCTCAA+TGG	-	chr5.2:8215550-8215569	None:intergenic	55.0%
	AGCAGCATCAACCTCAGGGT+TGG	-	chr5.2:8215620-8215639	None:intergenic	55.0%
	CCCCATTGCTGAGGTTTCTG+AGG	+	chr5.2:8215555-8215574	MS.gene09543:CDS	55.0%
	CGAGCAGTGTGGGAAGATTG+AGG	-	chr5.2:8215026-8215045	None:intergenic	55.0%
	CGGTGGTTGCAAAAGCTGCT+AGG	+	chr5.2:8215081-8215100	MS.gene09543:CDS	55.0%
	CTTCTTGATGCCGCTCATCC+TGG	+	chr5.2:8213810-8213829	MS.gene09543:CDS	55.0%
	GAGAGGAGAGAGATGTGCAG+GGG	+	chr5.2:8214921-8214940	MS.gene09543:CDS	55.0%
	GCAGTGTGGGAAGATTGAGG+AGG	-	chr5.2:8215023-8215042	None:intergenic	55.0%
	GCTGGTGAAAGGAAGACCGT+TGG	+	chr5.2:8214066-8214085	MS.gene09543:CDS	55.0%
	GGAGAGGAGAGAGATGTGCA+GGG	+	chr5.2:8214920-8214939	MS.gene09543:CDS	55.0%
	TGCCAGCAGCATCAACCTCA+GGG	-	chr5.2:8215624-8215643	None:intergenic	55.0%
	TGGAGAGGAGAGAGATGTGC+AGG	+	chr5.2:8214919-8214938	MS.gene09543:CDS	55.0%
!!	AACCCTGAGGTTGATGCTGC+TGG	+	chr5.2:8215619-8215638	MS.gene09543:CDS	55.0%
	AGAGAGATGTGCAGGGGAGG+AGG	+	chr5.2:8214927-8214946	MS.gene09543:CDS	60.0%
	AGCTGCAGCAACAGCAGCGA+CGG	-	chr5.2:8215114-8215133	None:intergenic	60.0%
	AGGAGAGAGATGTGCAGGGG+AGG	+	chr5.2:8214924-8214943	MS.gene09543:CDS	60.0%
	GCCATTGAGCCCCATTGCTG+AGG	+	chr5.2:8215546-8215565	MS.gene09543:CDS	60.0%
	GTGCCAGCAGCATCAACCTC+AGG	-	chr5.2:8215625-8215644	None:intergenic	60.0%
	GAGATGTGCAGGGGAGGAGG+AGG	+	chr5.2:8214930-8214949	MS.gene09543:CDS	65.0%
	GCAACAGCAGCGACGGCAGC+AGG	-	chr5.2:8215107-8215126	None:intergenic	70.0%

Chromosome	Type	Strat	End	Strand	Name
chr5.2	gene	8213549	8215720	8213549	ID=MS.gene09543
chr5.2	mRNA	8213549	8215720	8213549	ID=MS.gene09543.t1;Parent=MS.gene09543
chr5.2	exon	8213549	8213656	8213549	ID=MS.gene09543.t1.exon1;Parent=MS.gene09543.t1
chr5.2	CDS	8213549	8213656	8213549	ID=cds.MS.gene09543.t1;Parent=MS.gene09543.t1
chr5.2	exon	8213783	8213938	8213783	ID=MS.gene09543.t1.exon2;Parent=MS.gene09543.t1
chr5.2	CDS	8213783	8213938	8213783	ID=cds.MS.gene09543.t1;Parent=MS.gene09543.t1
chr5.2	exon	8214049	8214152	8214049	ID=MS.gene09543.t1.exon3;Parent=MS.gene09543.t1
chr5.2	CDS	8214049	8214152	8214049	ID=cds.MS.gene09543.t1;Parent=MS.gene09543.t1
chr5.2	exon	8214908	8215151	8214908	ID=MS.gene09543.t1.exon4;Parent=MS.gene09543.t1
chr5.2	CDS	8214908	8215151	8214908	ID=cds.MS.gene09543.t1;Parent=MS.gene09543.t1
chr5.2	exon	8215239	8215352	8215239	ID=MS.gene09543.t1.exon5;Parent=MS.gene09543.t1
chr5.2	CDS	8215239	8215352	8215239	ID=cds.MS.gene09543.t1;Parent=MS.gene09543.t1
chr5.2	exon	8215445	8215720	8215445	ID=MS.gene09543.t1.exon6;Parent=MS.gene09543.t1
chr5.2	CDS	8215445	8215720	8215445	ID=cds.MS.gene09543.t1;Parent=MS.gene09543.t1

Gene Sequence

>MS.gene09543

ATGGCGACGAACATTGGAATAATGGATGCTGCATACTTCGTCGGCAGATCTGAAATCCTCTCTTGGATCAATTCAACTCTTCAACTCAATCTCTCCAAAGTCGAAGAGGTTCCAATTTCTCCGATTCAATTTTCTTCAATTTTCATCGTTTTTCGTTGATTTTGTTTTAGGTTTTTGATTTACTGTTAATAATTTGATAGATCTGATTTTGTTGAATTGTGAAATTTTGTTTAGGCTTGTTCTGGTGCCGTTCATTGTCAGCTTCTTGATGCCGCTCATCCTGGAATTGTTCCGATGCATAAGGTGAATTTCGATGCGAAGAATGAGTATGAGATGATTCAGAATTACAAGGTTCTTCAAGATGTTTTCAACAAACTCAAAATCACTAAGGTAAATTTCGATTTTCGGTTGCGTTCTGATTTTCGTTTTTCTTTGAGATCTTGCGATTTTTCCGATTCGTGATTTTCTTAATTTTTTTATTTTGATTTTGATTTTCGCAGCATATTGAGGTTAGCAAGCTGGTGAAAGGAAGACCGTTGGATAATCTGGAGTTCATGCAATGGATGAAACGATACTGTGATTCTGTTAATTCTGGACAGCACAGGTAATTTAATCGTTACTCTAAATTTTTTGCGGATGCGTTTATTGTTTCTGTTGAAAATTTCTGATGCTAATCTTAATTGCGTGGAATTGTTATCTTTGAATTTGATAATTAGGTTTTATGATTGGAAATTTGTAATTCTACTGACGAACATATGTGATTAGAGTTAAAATTCAAATTTAATTTCATATTCAAATGTTTTAATGAAAATTTTCTGGATGAAATCTTGAAAATTAGGGTTTACGATTGGAGTTCTGTAATTCTGCTGATATATACGATTAGAATTCATTCAAATGCTTTGAGGATTGAATCATGATTAGTTTAAAACTGAGGTTACTGAATGTTGAACAAGGTTTTGATAATTAGGTTTTACAAGTCTATTGATGACGATATATGATTAGAATTCAAGTTCAGTTTTATATGTCTTAACTCTTAACTGTATCGAAGTGTCTTGTTGTTGTATTGGTAATGATCATATTGGATTTGAGGATTTAAGCTTGATAAATTCTAAACCGAGGTTGCTGAATGTTTTATTGAATGCGTCAAAGTCTTGTTTTGATATTGGTATTAATTATATTGGATTTGAGGATTTAAGTTTGATTAGTTCAAAACTGAGGTTGTTTTAAATGTATTGAAGTCTTGTTTTGATACTGGTGATAATTATGTTGGATTTGAGGATTTAAGTTTGGTTAGTTCAAAATTAAGGTTGCTGCATATTTTGTAATTGACTTGGCTGGCTTATGTGTTTCTTGTTTCAGTTATAATCCTTTGGAGAGGAGAGAGATGTGCAGGGGAGGAGGAGGAAGAGAAGTGAGTAAAAAATCTGCACACTCTCAACCCTCAAACAAGGGTGGTTCTACTTCACACAGGCCTCCTCAATCTTCCCACACTGCTCGAAGGAATGATGTGTCTACTGCAAACCATGCAAATCCGGTGGTTGCAAAAGCTGCTAGGCCTGCTGCCGTCGCTGCTGTTGCTGCAGCTCCTGCATATGATCAACAGGTACTTTGTTTTTATCATCTCATAGATGTTATCAAGTGATTTATGAATTATTTTAAGTGCATAGATCTAACACTTAAGGTGATACAGATAACGGAATTGAAGTTATCCATTGATAGTCTTGAGAAGGAACGAGATTTTTACTTTGCAAAACTGAGGGATATTGAGATACTTTGTCAGACTCCTGAAGTAGAACATTCACCGGTATTTTGCTTGTAAACTCTTCACTTTTGAGTATTGAAATTGGTAATTGTTGATGGGTTACTGATGAAATGTGAATTTTGTTTATGATTCAGGTTTTTGCAGCAATACAGAAGATATTGTATGCTACTGATGACAATGGATCTGAGTTGGAAGAAGCTCAAGCTATGCTTACTGCTGGTCTACAGGAAGCAGAGCCATTGAGCCCCATTGCTGAGGTTTCTGAGGAGAAGAGCAGTTCTGAAAATCTCAAGAGAAAGAACTTTGCCAACCCTGAGGTTGATGCTGCTGGCACCAATAATTTGTCTCCTAGACGAAGGCTTTCTGATGTTTCGAATGTTCACCATAACGGGTCACCTCTCATGATCTGA

Protein sequence

>MS.gene09543.t1

MATNIGIMDAAYFVGRSEILSWINSTLQLNLSKVEEACSGAVHCQLLDAAHPGIVPMHKVNFDAKNEYEMIQNYKVLQDVFNKLKITKHIEVSKLVKGRPLDNLEFMQWMKRYCDSVNSGQHSYNPLERREMCRGGGGREVSKKSAHSQPSNKGGSTSHRPPQSSHTARRNDVSTANHANPVVAKAARPAAVAAVAAAPAYDQQITELKLSIDSLEKERDFYFAKLRDIEILCQTPEVEHSPVFAAIQKILYATDDNGSELEEAQAMLTAGLQEAEPLSPIAEVSEEKSSSENLKRKNFANPEVDAAGTNNLSPRRRLSDVSNVHHNGSPLMI