Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20245.t1 | XP_003611667.2 | 90.4 | 333 | 31 | 1 | 1 | 332 | 1 | 333 | 6.80E-159 | 570.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20245.t1 | Q9FGQ6 | 56.8 | 338 | 128 | 5 | 1 | 331 | 1 | 327 | 2.7e-87 | 323.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20245.t1 | G7K588 | 90.4 | 333 | 31 | 1 | 1 | 332 | 1 | 333 | 4.9e-159 | 570.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050297 | MS.gene20245 | 0.814931 | 1.20E-51 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20245.t1 | MTR_5g016520 | 94.294 | 333 | 18 | 1 | 1 | 332 | 1 | 333 | 0.0 | 611 |
| MS.gene20245.t1 | MTR_0036s0210 | 58.304 | 283 | 94 | 6 | 1 | 275 | 1 | 267 | 1.08e-111 | 325 |
| MS.gene20245.t1 | MTR_4g108330 | 58.333 | 276 | 88 | 5 | 1 | 267 | 1 | 258 | 2.72e-107 | 315 |
| MS.gene20245.t1 | MTR_2072s0010 | 71.154 | 52 | 15 | 0 | 37 | 88 | 1 | 52 | 1.00e-18 | 79.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20245.t1 | AT5G67270 | 61.383 | 347 | 98 | 10 | 1 | 331 | 1 | 327 | 3.40e-140 | 400 |
| MS.gene20245.t1 | AT3G47690 | 57.509 | 273 | 96 | 4 | 1 | 271 | 1 | 255 | 4.90e-110 | 322 |
| MS.gene20245.t1 | AT5G62500 | 57.401 | 277 | 97 | 5 | 1 | 271 | 1 | 262 | 6.91e-108 | 317 |
Find 75 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTGTGATTCTGTTAATTC+TGG | 0.239455 | 5.1:+8721587 | MS.gene20245:CDS |
| AGGAAGACCGTTGGATAATC+TGG | 0.313939 | 5.1:+8721541 | MS.gene20245:CDS |
| TGAGATGATTCAGAATTATA+AGG | 0.333556 | 5.1:+8721347 | MS.gene20245:CDS |
| AATTGGAACCTCTTCGACTT+TGG | 0.334561 | 5.1:-8721112 | None:intergenic |
| TCCTCAGAAACCTCAGCAAT+GGG | 0.351899 | 5.1:-8722960 | None:intergenic |
| GCAACAGTGGCGACGGCAGC+AGG | 0.357205 | 5.1:-8722508 | None:intergenic |
| GGCGACGAACATTGGAATAA+TGG | 0.366648 | 5.1:+8721020 | MS.gene20245:CDS |
| ACCGGTGAATGTTCTACTTC+AGG | 0.375265 | 5.1:-8722736 | None:intergenic |
| TTTCGAATGTTCACCATAAC+GGG | 0.386900 | 5.1:+8723084 | MS.gene20245:CDS |
| AGAGAGATGTGCAGGGGAGG+AGG | 0.387265 | 5.1:+8722334 | MS.gene20245:CDS |
| TCGTCTAGGAGACAAATTAT+TGG | 0.405029 | 5.1:-8723048 | None:intergenic |
| TCATGAGAGGTGACCCGTTA+TGG | 0.407788 | 5.1:-8723097 | None:intergenic |
| CTTCTTGATGCCGCTCATCC+TGG | 0.411853 | 5.1:+8721279 | MS.gene20245:CDS |
| TTATGCATCGGAACAATTCC+AGG | 0.415843 | 5.1:-8721297 | None:intergenic |
| TCGTTTCAGTTATAATCCTT+TGG | 0.416745 | 5.1:+8722306 | MS.gene20245:intron |
| AACCCTGAGGTTGATGCTGC+TGG | 0.418093 | 5.1:+8723023 | MS.gene20245:CDS |
| AGCTCCTGCATATGATCAAC+AGG | 0.424134 | 5.1:+8722534 | MS.gene20245:CDS |
| AGGAGAGAGATGTGCAGGGG+AGG | 0.437578 | 5.1:+8722331 | MS.gene20245:CDS |
| TGGAGAGGAGAGAGATGTGC+AGG | 0.442889 | 5.1:+8722326 | MS.gene20245:CDS |
| TTCCTTCTCAAGACTATCAA+TGG | 0.443572 | 5.1:-8722662 | None:intergenic |
| TACTGCAAACCATGCAAATC+CGG | 0.449249 | 5.1:+8722465 | MS.gene20245:CDS |
| TATGCTTACTGCTGATCTAC+AGG | 0.453875 | 5.1:+8722920 | MS.gene20245:CDS |
| ACCTCAGCAATGGGGCTCAA+TGG | 0.463460 | 5.1:-8722951 | None:intergenic |
| GTTTCGAATGTTCACCATAA+CGG | 0.473409 | 5.1:+8723083 | MS.gene20245:CDS |
| GTAGATCTGAAATCCTCTCT+TGG | 0.479564 | 5.1:+8721061 | MS.gene20245:CDS |
| GTGCCAGCAGCATCAACCTC+AGG | 0.484253 | 5.1:-8723026 | None:intergenic |
| GTAGAACCACCCTTGTTTGA+GGG | 0.498601 | 5.1:-8722391 | None:intergenic |
| AGTAGAACCACCCTTGTTTG+AGG | 0.504441 | 5.1:-8722392 | None:intergenic |
| CAACAAACTCAAAATCACTA+AGG | 0.505654 | 5.1:+8721386 | MS.gene20245:CDS |
| CTCCTCAGAAACCTCAGCAA+TGG | 0.518364 | 5.1:-8722961 | None:intergenic |
| AGCTGCAGCAACAGTGGCGA+CGG | 0.519544 | 5.1:-8722515 | None:intergenic |
| TGATGACAATGGATCTGAGT+TGG | 0.524539 | 5.1:+8722884 | MS.gene20245:CDS |
| ATCAAGAAGCTGACAATGAA+CGG | 0.527675 | 5.1:-8721265 | None:intergenic |
| CGGTGGTTGCAAAAGCTGCT+AGG | 0.530783 | 5.1:+8722485 | MS.gene20245:CDS |
| CTGTTAATTCTGGACAGCAC+AGG | 0.531391 | 5.1:+8721597 | MS.gene20245:CDS |
| TGGAATTGTTCCGATGCATA+AGG | 0.531970 | 5.1:+8721299 | MS.gene20245:CDS |
| GCATATTGAGGTTAGCAAGC+TGG | 0.533221 | 5.1:+8721514 | MS.gene20245:intron |
| CCCCATTGCTGAGGTTTCTG+AGG | 0.538400 | 5.1:+8722959 | MS.gene20245:CDS |
| AGCAGCATCAACCTCAGGGT+TGG | 0.539714 | 5.1:-8723021 | None:intergenic |
| CACTCTCAACCCTCAAACAA+GGG | 0.547676 | 5.1:+8722382 | MS.gene20245:CDS |
| CGAGCAGTGTGGGAAGATTG+AGG | 0.547920 | 5.1:-8722427 | None:intergenic |
| ATCATTCCTTCGAGCAGTGT+GGG | 0.553545 | 5.1:-8722437 | None:intergenic |
| TTGCAACCACCGGATTTGCA+TGG | 0.557039 | 5.1:-8722474 | None:intergenic |
| ACACTCTCAACCCTCAAACA+AGG | 0.557498 | 5.1:+8722381 | MS.gene20245:CDS |
| GGAGAGGAGAGAGATGTGCA+GGG | 0.562837 | 5.1:+8722327 | MS.gene20245:CDS |
| GCCATTGAGCCCCATTGCTG+AGG | 0.565737 | 5.1:+8722950 | MS.gene20245:CDS |
| CAATCTCTCCAAAGTCGAAG+AGG | 0.568906 | 5.1:+8721104 | MS.gene20245:CDS |
| TAGAAATTCACCTTATGCAT+CGG | 0.573560 | 5.1:-8721309 | None:intergenic |
| CACATCTCTCTCCTCTCCAA+AGG | 0.574177 | 5.1:-8722322 | None:intergenic |
| GAGAGGAGAGAGATGTGCAG+GGG | 0.575095 | 5.1:+8722328 | MS.gene20245:CDS |
| GAGGTTAGCAAGCTGGTGAA+AGG | 0.576068 | 5.1:+8721521 | MS.gene20245:CDS |
| AGTACCTGTTGATCATATGC+AGG | 0.577474 | 5.1:-8722538 | None:intergenic |
| GGTCACCTCTCATGATCTGA+AGG | 0.580315 | 5.1:+8723105 | MS.gene20245:CDS |
| ATCCATTGATAGTCTTGAGA+AGG | 0.585036 | 5.1:+8722660 | MS.gene20245:CDS |
| ACATCAGAAAGCCTTCGTCT+AGG | 0.591311 | 5.1:-8723062 | None:intergenic |
| TCCTGAAGTAGAACATTCAC+CGG | 0.595180 | 5.1:+8722735 | MS.gene20245:CDS |
| TCAGTTATAATCCTTTGGAG+AGG | 0.609241 | 5.1:+8722311 | MS.gene20245:intron |
| GCTGGTGAAAGGAAGACCGT+TGG | 0.609936 | 5.1:+8721532 | MS.gene20245:CDS |
| AATCTTCCCACACTGCTCGA+AGG | 0.610802 | 5.1:+8722431 | MS.gene20245:CDS |
| TGCCAGCAGCATCAACCTCA+GGG | 0.613718 | 5.1:-8723025 | None:intergenic |
| TGCAGGAGCTGCAGCAACAG+TGG | 0.616795 | 5.1:-8722521 | None:intergenic |
| ATGGACACTGCATACTTCGT+CGG | 0.622514 | 5.1:+8721039 | MS.gene20245:CDS |
| CATCATTCCTTCGAGCAGTG+TGG | 0.625952 | 5.1:-8722438 | None:intergenic |
| CGGAACAATTCCAGGATGAG+CGG | 0.629441 | 5.1:-8721289 | None:intergenic |
| ATAATTTGTCTCCTAGACGA+AGG | 0.644751 | 5.1:+8723051 | MS.gene20245:CDS |
| TGCAAACCATGCAAATCCGG+TGG | 0.660574 | 5.1:+8722468 | MS.gene20245:CDS |
| GAGTTGAATTGATCCAAGAG+AGG | 0.661001 | 5.1:-8721074 | None:intergenic |
| TTGTATGCTACTGATGACAA+TGG | 0.664708 | 5.1:+8722873 | MS.gene20245:CDS |
| ATAATCTGGAGTTCATGCAA+TGG | 0.681963 | 5.1:+8721555 | MS.gene20245:CDS |
| TCTCAACCCTCAAACAAGGG+TGG | 0.685605 | 5.1:+8722385 | MS.gene20245:CDS |
| CCTCAGAAACCTCAGCAATG+GGG | 0.699654 | 5.1:-8722959 | None:intergenic |
| AAAGAACTTTGCCAACCCTG+AGG | 0.702193 | 5.1:+8723010 | MS.gene20245:CDS |
| ATGAACTCCAGATTATCCAA+CGG | 0.710109 | 5.1:-8721548 | None:intergenic |
| AGGGTGGTTCTACTTCACAC+AGG | 0.720858 | 5.1:+8722401 | MS.gene20245:CDS |
| GCAGTGTGGGAAGATTGAGG+AGG | 0.731744 | 5.1:-8722424 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAATTAAGAAAATC+AGG | - | chr5.1:8721479-8721498 | None:intergenic | 10.0% |
| !! | AAAATTGAAGAAAATTGAAT+CGG | - | chr5.1:8721141-8721160 | None:intergenic | 15.0% |
| !! | TATTAATTATATTGGATTTG+AGG | + | chr5.1:8722124-8722143 | MS.gene20245:intron | 15.0% |
| !!! | ATTAAGGTATATTTTGTAAT+TGG | + | chr5.1:8722260-8722279 | MS.gene20245:intron | 15.0% |
| !!! | GTTTGATTAGTTTAAAATTA+AGG | + | chr5.1:8722244-8722263 | MS.gene20245:intron | 15.0% |
| !!! | TATCTTTGAAATTGATAATT+AGG | + | chr5.1:8721709-8721728 | MS.gene20245:intron | 15.0% |
| !! | AAATTAAGAAAATCAGGAAT+CGG | - | chr5.1:8721473-8721492 | None:intergenic | 20.0% |
| !! | GATATCGGTATTAATTATAT+TGG | + | chr5.1:8722116-8722135 | MS.gene20245:intron | 20.0% |
| !! | GTAAATGGTAATAATTAGAT+TGG | + | chr5.1:8721832-8721851 | MS.gene20245:intron | 20.0% |
| !! | TTATACTTATATTGGATTTG+AGG | + | chr5.1:8722215-8722234 | MS.gene20245:intron | 20.0% |
| !!! | AAATTGATAATTAGGTCTTA+TGG | + | chr5.1:8721717-8721736 | MS.gene20245:intron | 20.0% |
| !!! | GATATTGGTTATACTTATAT+TGG | + | chr5.1:8722207-8722226 | MS.gene20245:intron | 20.0% |
| !!! | TGAATTGTGAAATTTTGTTT+AGG | + | chr5.1:8721230-8721249 | MS.gene20245:intron | 20.0% |
| !!! | TTTTTCGTTGATTTTGTTTT+AGG | + | chr5.1:8721166-8721185 | MS.gene20245:intron | 20.0% |
| ! | TAATGATCATATTGGATTTG+AGG | + | chr5.1:8722024-8722043 | MS.gene20245:intron | 25.0% |
| ! | TGAGATGATTCAGAATTATA+AGG | + | chr5.1:8721347-8721366 | MS.gene20245:CDS | 25.0% |
| !! | AATTTCATGCAAATGTTTTG+AGG | + | chr5.1:8721793-8721812 | MS.gene20245:intron | 25.0% |
| !! | ATTTTTACTTTGCAAAACTG+AGG | + | chr5.1:8722689-8722708 | MS.gene20245:CDS | 25.0% |
| !! | CTAAGGTAAATTTCGATTTT+CGG | + | chr5.1:8721403-8721422 | MS.gene20245:intron | 25.0% |
| !! | GGTATATTTTGTAATTGGAT+TGG | + | chr5.1:8722265-8722284 | MS.gene20245:intron | 25.0% |
| !! | TCAGCAAAAAATTTAGAGTA+AGG | - | chr5.1:8721632-8721651 | None:intergenic | 25.0% |
| !! | TGAAATTGGTAATTGTTGAT+GGG | + | chr5.1:8722791-8722810 | MS.gene20245:intron | 25.0% |
| !! | TTGAAATTGGTAATTGTTGA+TGG | + | chr5.1:8722790-8722809 | MS.gene20245:intron | 25.0% |
| !! | TTTTTACTTTGCAAAACTGA+GGG | + | chr5.1:8722690-8722709 | MS.gene20245:CDS | 25.0% |
| !!! | GTGAATTTTGTTTATGATTC+AGG | + | chr5.1:8722827-8722846 | MS.gene20245:intron | 25.0% |
| !!! | TCAAAGTCTTGTTTTGATAT+CGG | + | chr5.1:8722101-8722120 | MS.gene20245:intron | 25.0% |
| !!! | TCAGAGTATTGTTTTGATAT+TGG | + | chr5.1:8722192-8722211 | MS.gene20245:intron | 25.0% |
| AAGTTACTGAATGTTGAACA+AGG | + | chr5.1:8721889-8721908 | MS.gene20245:intron | 30.0% | |
| ACTTAAGGTGATACAGATAA+CGG | + | chr5.1:8722627-8722646 | MS.gene20245:intron | 30.0% | |
| AGAGTTTACAAGCAAAATAC+CGG | - | chr5.1:8722757-8722776 | None:intergenic | 30.0% | |
| CAACAAACTCAAAATCACTA+AGG | + | chr5.1:8721386-8721405 | MS.gene20245:CDS | 30.0% | |
| CTTTGATAAGTTCTTAACTG+AGG | + | chr5.1:8722054-8722073 | MS.gene20245:intron | 30.0% | |
| GAAAATTGAATCGGAGAAAT+TGG | - | chr5.1:8721132-8721151 | None:intergenic | 30.0% | |
| TACTGTGATTCTGTTAATTC+TGG | + | chr5.1:8721587-8721606 | MS.gene20245:CDS | 30.0% | |
| TAGAAATTCACCTTATGCAT+CGG | - | chr5.1:8721312-8721331 | None:intergenic | 30.0% | |
| TCGTTTCAGTTATAATCCTT+TGG | + | chr5.1:8722306-8722325 | MS.gene20245:intron | 30.0% | |
| ! | TGATAATTAGGTCTTATGGT+TGG | + | chr5.1:8721721-8721740 | MS.gene20245:intron | 30.0% |
| !! | AATTTTGTTTAGGCTTGTTC+TGG | + | chr5.1:8721240-8721259 | MS.gene20245:intron | 30.0% |
| !! | GGTATTGGTAATGATCATAT+TGG | + | chr5.1:8722016-8722035 | MS.gene20245:intron | 30.0% |
| !! | TCACTTACGAGTATTGAAAT+TGG | + | chr5.1:8722777-8722796 | MS.gene20245:intron | 30.0% |
| !! | TTAGTTCAAAGTTTGCTGAT+TGG | + | chr5.1:8722159-8722178 | MS.gene20245:intron | 30.0% |
| !!! | CGTGTTTTGTTATTGGTAAA+TGG | + | chr5.1:8721817-8721836 | MS.gene20245:intron | 30.0% |
| !!! | TATTTTGTAATTGGATTGGC+TGG | + | chr5.1:8722269-8722288 | MS.gene20245:intron | 30.0% |
| ATCAAGAAGCTGACAATGAA+CGG | - | chr5.1:8721268-8721287 | None:intergenic | 35.0% | |
| ATGAACTCCAGATTATCCAA+CGG | - | chr5.1:8721551-8721570 | None:intergenic | 35.0% | |
| GTGCATAGATCTAACACTTA+AGG | + | chr5.1:8722612-8722631 | MS.gene20245:intron | 35.0% | |
| GTTTCGAATGTTCACCATAA+CGG | + | chr5.1:8723083-8723102 | MS.gene20245:CDS | 35.0% | |
| TCGTCTAGGAGACAAATTAT+TGG | - | chr5.1:8723051-8723070 | None:intergenic | 35.0% | |
| TGATGCTAATCTTAATTGCG+TGG | + | chr5.1:8721680-8721699 | MS.gene20245:intron | 35.0% | |
| TTCCTTCTCAAGACTATCAA+TGG | - | chr5.1:8722665-8722684 | None:intergenic | 35.0% | |
| TTGTATGCTACTGATGACAA+TGG | + | chr5.1:8722873-8722892 | MS.gene20245:CDS | 35.0% | |
| TTTCGAATGTTCACCATAAC+GGG | + | chr5.1:8723084-8723103 | MS.gene20245:CDS | 35.0% | |
| ! | ATAATCTGGAGTTCATGCAA+TGG | + | chr5.1:8721555-8721574 | MS.gene20245:CDS | 35.0% |
| ! | ATAATTTGTCTCCTAGACGA+AGG | + | chr5.1:8723051-8723070 | MS.gene20245:CDS | 35.0% |
| ! | ATCCATTGATAGTCTTGAGA+AGG | + | chr5.1:8722660-8722679 | MS.gene20245:CDS | 35.0% |
| ! | TCAGTTATAATCCTTTGGAG+AGG | + | chr5.1:8722311-8722330 | MS.gene20245:intron | 35.0% |
| ! | TGAACAAGGTCTTGATAACT+AGG | + | chr5.1:8721903-8721922 | MS.gene20245:intron | 35.0% |
| ! | TTGATTTTCGCAGCATATTG+AGG | + | chr5.1:8721502-8721521 | MS.gene20245:intron | 35.0% |
| !! | TTGAGGTCGTGTTTTGTTAT+TGG | + | chr5.1:8721810-8721829 | MS.gene20245:intron | 35.0% |
| AATTGGAACCTCTTCGACTT+TGG | - | chr5.1:8721115-8721134 | None:intergenic | 40.0% | |
| ACTGTATCGAAGTCTTCTTG+TGG | + | chr5.1:8721995-8722014 | MS.gene20245:intron | 40.0% | |
| AGTACCTGTTGATCATATGC+AGG | - | chr5.1:8722541-8722560 | None:intergenic | 40.0% | |
| GAGTTGAATTGATCCAAGAG+AGG | - | chr5.1:8721077-8721096 | None:intergenic | 40.0% | |
| TACTGCAAACCATGCAAATC+CGG | + | chr5.1:8722465-8722484 | MS.gene20245:CDS | 40.0% | |
| TATGCTTACTGCTGATCTAC+AGG | + | chr5.1:8722920-8722939 | MS.gene20245:CDS | 40.0% | |
| TCCTGAAGTAGAACATTCAC+CGG | + | chr5.1:8722735-8722754 | MS.gene20245:CDS | 40.0% | |
| TCGAAGTCTTCTTGTGGTAT+TGG | + | chr5.1:8722001-8722020 | MS.gene20245:intron | 40.0% | |
| TGATGACAATGGATCTGAGT+TGG | + | chr5.1:8722884-8722903 | MS.gene20245:CDS | 40.0% | |
| TGGAATTGTTCCGATGCATA+AGG | + | chr5.1:8721299-8721318 | MS.gene20245:CDS | 40.0% | |
| TTATGCATCGGAACAATTCC+AGG | - | chr5.1:8721300-8721319 | None:intergenic | 40.0% | |
| ! | GTAGATCTGAAATCCTCTCT+TGG | + | chr5.1:8721061-8721080 | MS.gene20245:CDS | 40.0% |
| AAAGAACTTTGCCAACCCTG+AGG | + | chr5.1:8723010-8723029 | MS.gene20245:CDS | 45.0% | |
| ACACTCTCAACCCTCAAACA+AGG | + | chr5.1:8722381-8722400 | MS.gene20245:CDS | 45.0% | |
| ACATCAGAAAGCCTTCGTCT+AGG | - | chr5.1:8723065-8723084 | None:intergenic | 45.0% | |
| ACCGGTGAATGTTCTACTTC+AGG | - | chr5.1:8722739-8722758 | None:intergenic | 45.0% | |
| AGCTCCTGCATATGATCAAC+AGG | + | chr5.1:8722534-8722553 | MS.gene20245:CDS | 45.0% | |
| AGGAAGACCGTTGGATAATC+TGG | + | chr5.1:8721541-8721560 | MS.gene20245:CDS | 45.0% | |
| ATCATTCCTTCGAGCAGTGT+GGG | - | chr5.1:8722440-8722459 | None:intergenic | 45.0% | |
| ATGGACACTGCATACTTCGT+CGG | + | chr5.1:8721039-8721058 | MS.gene20245:CDS | 45.0% | |
| CAATCTCTCCAAAGTCGAAG+AGG | + | chr5.1:8721104-8721123 | MS.gene20245:CDS | 45.0% | |
| CACTCTCAACCCTCAAACAA+GGG | + | chr5.1:8722382-8722401 | MS.gene20245:CDS | 45.0% | |
| CTGTTAATTCTGGACAGCAC+AGG | + | chr5.1:8721597-8721616 | MS.gene20245:CDS | 45.0% | |
| GCATATTGAGGTTAGCAAGC+TGG | + | chr5.1:8721514-8721533 | MS.gene20245:intron | 45.0% | |
| GGCGACGAACATTGGAATAA+TGG | + | chr5.1:8721020-8721039 | MS.gene20245:CDS | 45.0% | |
| TCCTCAGAAACCTCAGCAAT+GGG | - | chr5.1:8722963-8722982 | None:intergenic | 45.0% | |
| ! | AGTAGAACCACCCTTGTTTG+AGG | - | chr5.1:8722395-8722414 | None:intergenic | 45.0% |
| ! | GTAGAACCACCCTTGTTTGA+GGG | - | chr5.1:8722394-8722413 | None:intergenic | 45.0% |
| ! | TTCGATTTTCGGTTGCGTTC+TGG | + | chr5.1:8721414-8721433 | MS.gene20245:intron | 45.0% |
| AATCTTCCCACACTGCTCGA+AGG | + | chr5.1:8722431-8722450 | MS.gene20245:CDS | 50.0% | |
| CACATCTCTCTCCTCTCCAA+AGG | - | chr5.1:8722325-8722344 | None:intergenic | 50.0% | |
| CATCATTCCTTCGAGCAGTG+TGG | - | chr5.1:8722441-8722460 | None:intergenic | 50.0% | |
| CCTCAGAAACCTCAGCAATG+GGG | - | chr5.1:8722962-8722981 | None:intergenic | 50.0% | |
| CGGAACAATTCCAGGATGAG+CGG | - | chr5.1:8721292-8721311 | None:intergenic | 50.0% | |
| CTCCTCAGAAACCTCAGCAA+TGG | - | chr5.1:8722964-8722983 | None:intergenic | 50.0% | |
| GAGGTTAGCAAGCTGGTGAA+AGG | + | chr5.1:8721521-8721540 | MS.gene20245:CDS | 50.0% | |
| TCATGAGAGGTGACCCGTTA+TGG | - | chr5.1:8723100-8723119 | None:intergenic | 50.0% | |
| TCTCAACCCTCAAACAAGGG+TGG | + | chr5.1:8722385-8722404 | MS.gene20245:CDS | 50.0% | |
| TGCAAACCATGCAAATCCGG+TGG | + | chr5.1:8722468-8722487 | MS.gene20245:CDS | 50.0% | |
| TTGCAACCACCGGATTTGCA+TGG | - | chr5.1:8722477-8722496 | None:intergenic | 50.0% | |
| ! | AGGGTGGTTCTACTTCACAC+AGG | + | chr5.1:8722401-8722420 | MS.gene20245:CDS | 50.0% |
| ! | CTAGCAGCTTTTGCAACCAC+CGG | - | chr5.1:8722487-8722506 | None:intergenic | 50.0% |
| ACCTCAGCAATGGGGCTCAA+TGG | - | chr5.1:8722954-8722973 | None:intergenic | 55.0% | |
| AGCAGCATCAACCTCAGGGT+TGG | - | chr5.1:8723024-8723043 | None:intergenic | 55.0% | |
| CCCCATTGCTGAGGTTTCTG+AGG | + | chr5.1:8722959-8722978 | MS.gene20245:CDS | 55.0% | |
| CGAGCAGTGTGGGAAGATTG+AGG | - | chr5.1:8722430-8722449 | None:intergenic | 55.0% | |
| CGGTGGTTGCAAAAGCTGCT+AGG | + | chr5.1:8722485-8722504 | MS.gene20245:CDS | 55.0% | |
| CTTCTTGATGCCGCTCATCC+TGG | + | chr5.1:8721279-8721298 | MS.gene20245:CDS | 55.0% | |
| GAGAGGAGAGAGATGTGCAG+GGG | + | chr5.1:8722328-8722347 | MS.gene20245:CDS | 55.0% | |
| GCAGTGTGGGAAGATTGAGG+AGG | - | chr5.1:8722427-8722446 | None:intergenic | 55.0% | |
| GCTGGTGAAAGGAAGACCGT+TGG | + | chr5.1:8721532-8721551 | MS.gene20245:CDS | 55.0% | |
| GGAGAGGAGAGAGATGTGCA+GGG | + | chr5.1:8722327-8722346 | MS.gene20245:CDS | 55.0% | |
| TGCCAGCAGCATCAACCTCA+GGG | - | chr5.1:8723028-8723047 | None:intergenic | 55.0% | |
| TGGAGAGGAGAGAGATGTGC+AGG | + | chr5.1:8722326-8722345 | MS.gene20245:CDS | 55.0% | |
| !! | AACCCTGAGGTTGATGCTGC+TGG | + | chr5.1:8723023-8723042 | MS.gene20245:CDS | 55.0% |
| AGAGAGATGTGCAGGGGAGG+AGG | + | chr5.1:8722334-8722353 | MS.gene20245:CDS | 60.0% | |
| AGCTGCAGCAACAGTGGCGA+CGG | - | chr5.1:8722518-8722537 | None:intergenic | 60.0% | |
| AGGAGAGAGATGTGCAGGGG+AGG | + | chr5.1:8722331-8722350 | MS.gene20245:CDS | 60.0% | |
| GCCATTGAGCCCCATTGCTG+AGG | + | chr5.1:8722950-8722969 | MS.gene20245:CDS | 60.0% | |
| GTGCCAGCAGCATCAACCTC+AGG | - | chr5.1:8723029-8723048 | None:intergenic | 60.0% | |
| TGCAGGAGCTGCAGCAACAG+TGG | - | chr5.1:8722524-8722543 | None:intergenic | 60.0% | |
| GCAACAGTGGCGACGGCAGC+AGG | - | chr5.1:8722511-8722530 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 8721018 | 8723124 | 8721018 | ID=MS.gene20245 |
| chr5.1 | mRNA | 8721018 | 8723124 | 8721018 | ID=MS.gene20245.t1;Parent=MS.gene20245 |
| chr5.1 | exon | 8721018 | 8721125 | 8721018 | ID=MS.gene20245.t1.exon1;Parent=MS.gene20245.t1 |
| chr5.1 | CDS | 8721018 | 8721125 | 8721018 | ID=cds.MS.gene20245.t1;Parent=MS.gene20245.t1 |
| chr5.1 | exon | 8721252 | 8721407 | 8721252 | ID=MS.gene20245.t1.exon2;Parent=MS.gene20245.t1 |
| chr5.1 | CDS | 8721252 | 8721407 | 8721252 | ID=cds.MS.gene20245.t1;Parent=MS.gene20245.t1 |
| chr5.1 | exon | 8721515 | 8721618 | 8721515 | ID=MS.gene20245.t1.exon3;Parent=MS.gene20245.t1 |
| chr5.1 | CDS | 8721515 | 8721618 | 8721515 | ID=cds.MS.gene20245.t1;Parent=MS.gene20245.t1 |
| chr5.1 | exon | 8722315 | 8722555 | 8722315 | ID=MS.gene20245.t1.exon4;Parent=MS.gene20245.t1 |
| chr5.1 | CDS | 8722315 | 8722555 | 8722315 | ID=cds.MS.gene20245.t1;Parent=MS.gene20245.t1 |
| chr5.1 | exon | 8722643 | 8722756 | 8722643 | ID=MS.gene20245.t1.exon5;Parent=MS.gene20245.t1 |
| chr5.1 | CDS | 8722643 | 8722756 | 8722643 | ID=cds.MS.gene20245.t1;Parent=MS.gene20245.t1 |
| chr5.1 | exon | 8722849 | 8723124 | 8722849 | ID=MS.gene20245.t1.exon6;Parent=MS.gene20245.t1 |
| chr5.1 | CDS | 8722849 | 8723124 | 8722849 | ID=cds.MS.gene20245.t1;Parent=MS.gene20245.t1 |
| Gene Sequence |
| Protein sequence |
