AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene015206

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene015206.t1 MTR_5g016520 96.707 334 9 2 1 333 1 333 0.0 668
MS.gene015206.t1 MTR_0036s0210 58.657 283 94 5 1 276 1 267 1.95e-114 333
MS.gene015206.t1 MTR_4g108330 57.193 285 94 5 1 276 1 266 3.12e-109 320
MS.gene015206.t1 MTR_2072s0010 73.077 52 14 0 37 88 1 52 3.35e-20 82.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene015206.t1 AT5G67270 61.494 348 97 10 1 332 1 327 6.06e-142 404
MS.gene015206.t1 AT3G47690 54.915 295 110 5 1 291 1 276 7.85e-112 326
MS.gene015206.t1 AT5G62500 57.194 278 97 5 1 272 1 262 4.63e-108 317

Find 76 sgRNAs with CRISPR-Local

Find 121 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTGTGATTCTGTTAATTC+TGG 0.239455 5.4:+9855354 MS.gene015206:CDS
AGGAAGACCGTTGGATAATC+TGG 0.313939 5.4:+9855308 MS.gene015206:CDS
AATTGGAACCTCTTCGACTT+TGG 0.334561 5.4:-9854876 None:intergenic
AGAGAGATGTGCAGGGGAGG+AGG 0.344828 5.4:+9856160 MS.gene015206:CDS
TCCTCAGAAACCTCAGCAAT+GGG 0.351899 5.4:-9856789 None:intergenic
GCAACAGCAGCGACGGCAGC+AGG 0.370156 5.4:-9856337 None:intergenic
GGCGACGAACATTGGAATAA+TGG 0.371602 5.4:+9854784 MS.gene015206:CDS
ACCGGTGAATGTTCTACTTC+AGG 0.375265 5.4:-9856565 None:intergenic
TTTCGAATGTTCACCATAAC+GGG 0.386900 5.4:+9856913 MS.gene015206:CDS
AGCTGCAGCAACAGCAGCGA+CGG 0.391380 5.4:-9856344 None:intergenic
TCGTCTAGGAGACAAATTAT+TGG 0.405029 5.4:-9856877 None:intergenic
TCATGAGAGGTGACCCGTTA+TGG 0.407788 5.4:-9856926 None:intergenic
TTGTTTCAGTTATAATCCTT+TGG 0.411329 5.4:+9856132 MS.gene015206:intron
CTTCTTGATGCCGCTCATCC+TGG 0.411853 5.4:+9855043 MS.gene015206:CDS
GAGATGTGCAGGGGAGGAGG+AGG 0.415206 5.4:+9856163 MS.gene015206:CDS
TTATGCATCGGAACAATTCC+AGG 0.415843 5.4:-9855061 None:intergenic
AACCCTGAGGTTGATGCTGC+TGG 0.418093 5.4:+9856852 MS.gene015206:CDS
AGCTCCTGCATATGATCAAC+AGG 0.424134 5.4:+9856363 MS.gene015206:CDS
AGGAGAGAGATGTGCAGGGG+AGG 0.437578 5.4:+9856157 MS.gene015206:CDS
TGGAGAGGAGAGAGATGTGC+AGG 0.442889 5.4:+9856152 MS.gene015206:CDS
TTCCTTCTCAAGACTATCAA+TGG 0.443572 5.4:-9856491 None:intergenic
TACTGCAAACCATGCAAATC+CGG 0.449249 5.4:+9856294 MS.gene015206:CDS
TATGCTTACTGCTGGTCTAC+AGG 0.461063 5.4:+9856749 MS.gene015206:CDS
GCAGATCTGAAATCCTCTCT+TGG 0.463193 5.4:+9854825 MS.gene015206:CDS
ACCTCAGCAATGGGGCTCAA+TGG 0.463460 5.4:-9856780 None:intergenic
GTTTCGAATGTTCACCATAA+CGG 0.473409 5.4:+9856912 MS.gene015206:CDS
GTGCCAGCAGCATCAACCTC+AGG 0.484253 5.4:-9856855 None:intergenic
GTAGAACCACCCTTGTTTGA+GGG 0.498601 5.4:-9856220 None:intergenic
AGTAGAACCACCCTTGTTTG+AGG 0.504441 5.4:-9856221 None:intergenic
CAACAAACTCAAAATCACTA+AGG 0.505654 5.4:+9855150 MS.gene015206:CDS
CTCCTCAGAAACCTCAGCAA+TGG 0.518364 5.4:-9856790 None:intergenic
TGATGACAATGGATCTGAGT+TGG 0.524539 5.4:+9856713 MS.gene015206:CDS
ATCAAGAAGCTGACAATGAA+CGG 0.527675 5.4:-9855029 None:intergenic
CGGTGGTTGCAAAAGCTGCT+AGG 0.530783 5.4:+9856314 MS.gene015206:CDS
CTGTTAATTCTGGACAGCAC+AGG 0.531391 5.4:+9855364 MS.gene015206:CDS
TGGAATTGTTCCGATGCATA+AGG 0.531970 5.4:+9855063 MS.gene015206:CDS
GCATATTGAGGTTAGCAAGC+TGG 0.533221 5.4:+9855281 MS.gene015206:intron
CCCCATTGCTGAGGTTTCTG+AGG 0.538400 5.4:+9856788 MS.gene015206:CDS
AGCAGCATCAACCTCAGGGT+TGG 0.539714 5.4:-9856850 None:intergenic
CACTCTCAACCCTCAAACAA+GGG 0.547676 5.4:+9856211 MS.gene015206:CDS
CGAGCAGTGTGGGAAGATTG+AGG 0.547920 5.4:-9856256 None:intergenic
ATCATTCCTTCGAGCAGTGT+GGG 0.553545 5.4:-9856266 None:intergenic
ATCCATTGATAGTCTTGAGA+AGG 0.556956 5.4:+9856489 MS.gene015206:CDS
TTGCAACCACCGGATTTGCA+TGG 0.557039 5.4:-9856303 None:intergenic
ACACTCTCAACCCTCAAACA+AGG 0.557498 5.4:+9856210 MS.gene015206:CDS
GGAGAGGAGAGAGATGTGCA+GGG 0.562837 5.4:+9856153 MS.gene015206:CDS
GCCATTGAGCCCCATTGCTG+AGG 0.565737 5.4:+9856779 MS.gene015206:CDS
CAATCTCTCCAAAGTCGAAG+AGG 0.568906 5.4:+9854868 MS.gene015206:CDS
CACATCTCTCTCCTCTCCAA+AGG 0.574177 5.4:-9856148 None:intergenic
GAGAGGAGAGAGATGTGCAG+GGG 0.575095 5.4:+9856154 MS.gene015206:CDS
GAGGTTAGCAAGCTGGTGAA+AGG 0.576068 5.4:+9855288 MS.gene015206:CDS
AGTACCTGTTGATCATATGC+AGG 0.577474 5.4:-9856367 None:intergenic
TCGAAATTCACCTTATGCAT+CGG 0.580314 5.4:-9855073 None:intergenic
GGTCACCTCTCATGATCTGA+AGG 0.580315 5.4:+9856934 MS.gene015206:CDS
GCTCAAGCTATGCTTACTGC+TGG 0.581689 5.4:+9856741 MS.gene015206:CDS
ATGGATGCTGCATACTTCGT+CGG 0.586038 5.4:+9854803 MS.gene015206:CDS
ACATCAGAAAGCCTTCGTCT+AGG 0.591311 5.4:-9856891 None:intergenic
TCCTGAAGTAGAACATTCAC+CGG 0.595180 5.4:+9856564 MS.gene015206:CDS
TGAGATGATTCAGAATTACA+AGG 0.599247 5.4:+9855111 MS.gene015206:CDS
TCAGTTATAATCCTTTGGAG+AGG 0.609241 5.4:+9856137 MS.gene015206:intron
GCTGGTGAAAGGAAGACCGT+TGG 0.609936 5.4:+9855299 MS.gene015206:CDS
AATCTTCCCACACTGCTCGA+AGG 0.610802 5.4:+9856260 MS.gene015206:CDS
TGCCAGCAGCATCAACCTCA+GGG 0.613718 5.4:-9856854 None:intergenic
CATCATTCCTTCGAGCAGTG+TGG 0.625952 5.4:-9856267 None:intergenic
CGGAACAATTCCAGGATGAG+CGG 0.629441 5.4:-9855053 None:intergenic
ATAATTTGTCTCCTAGACGA+AGG 0.644751 5.4:+9856880 MS.gene015206:CDS
TGCAAACCATGCAAATCCGG+TGG 0.660574 5.4:+9856297 MS.gene015206:CDS
GAGTTGAATTGATCCAAGAG+AGG 0.661001 5.4:-9854838 None:intergenic
TTGTATGCTACTGATGACAA+TGG 0.664708 5.4:+9856702 MS.gene015206:CDS
ATAATCTGGAGTTCATGCAA+TGG 0.681963 5.4:+9855322 MS.gene015206:CDS
TCTCAACCCTCAAACAAGGG+TGG 0.685605 5.4:+9856214 MS.gene015206:CDS
CCTCAGAAACCTCAGCAATG+GGG 0.699654 5.4:-9856788 None:intergenic
AAAGAACTTTGCCAACCCTG+AGG 0.702193 5.4:+9856839 MS.gene015206:CDS
ATGAACTCCAGATTATCCAA+CGG 0.710109 5.4:-9855315 None:intergenic
AGGGTGGTTCTACTTCACAC+AGG 0.720858 5.4:+9856230 MS.gene015206:CDS
GCAGTGTGGGAAGATTGAGG+AGG 0.731744 5.4:-9856253 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTGAAGAAAATTGAAT+CGG - chr5.4:9854905-9854924 None:intergenic 15.0%
!! GATATTGGTATTAATTATAT+TGG + chr5.4:9855940-9855959 MS.gene015206:intron 15.0%
!! TATTAATTATATTGGATTTG+AGG + chr5.4:9855948-9855967 MS.gene015206:intron 15.0%
!!! ATGTTTTAATGAAAATTTTC+TGG + chr5.4:9855578-9855597 MS.gene015206:intron 15.0%
!!! TATCTTTGAATTTGATAATT+AGG + chr5.4:9855476-9855495 MS.gene015206:intron 15.0%
!! AAATTAAGAAAATCACGAAT+CGG - chr5.4:9855236-9855255 None:intergenic 20.0%
!!! TGAATTGTGAAATTTTGTTT+AGG + chr5.4:9854994-9855013 MS.gene015206:intron 20.0%
!!! TGATAATTAGGTTTTATGAT+TGG + chr5.4:9855488-9855507 MS.gene015206:intron 20.0%
!!! TTTTTCGTTGATTTTGTTTT+AGG + chr5.4:9854930-9854949 MS.gene015206:intron 20.0%
! GGATGAAATCTTGAAAATTA+GGG + chr5.4:9855599-9855618 MS.gene015206:intron 25.0%
! TAATGATCATATTGGATTTG+AGG + chr5.4:9855849-9855868 MS.gene015206:intron 25.0%
! TGATAATTATGTTGGATTTG+AGG + chr5.4:9856037-9856056 MS.gene015206:intron 25.0%
! TGGATGAAATCTTGAAAATT+AGG + chr5.4:9855598-9855617 MS.gene015206:intron 25.0%
! TTGTTTCAGTTATAATCCTT+TGG + chr5.4:9856132-9856151 MS.gene015206:intron 25.0%
!! ATTTTTACTTTGCAAAACTG+AGG + chr5.4:9856518-9856537 MS.gene015206:CDS 25.0%
!! CTAAGGTAAATTTCGATTTT+CGG + chr5.4:9855167-9855186 MS.gene015206:intron 25.0%
!! GTTTGGTTAGTTCAAAATTA+AGG + chr5.4:9856066-9856085 MS.gene015206:intron 25.0%
!! TGAAATTGGTAATTGTTGAT+GGG + chr5.4:9856620-9856639 MS.gene015206:intron 25.0%
!! TGCATATTTTGTAATTGACT+TGG + chr5.4:9856093-9856112 MS.gene015206:intron 25.0%
!! TTGAAATTGGTAATTGTTGA+TGG + chr5.4:9856619-9856638 MS.gene015206:intron 25.0%
!! TTTTTACTTTGCAAAACTGA+GGG + chr5.4:9856519-9856538 MS.gene015206:CDS 25.0%
!!! GTGAATTTTGTTTATGATTC+AGG + chr5.4:9856656-9856675 MS.gene015206:intron 25.0%
!!! TCAAAGTCTTGTTTTGATAT+TGG + chr5.4:9855925-9855944 MS.gene015206:intron 25.0%
!!! TCACTTTTGAGTATTGAAAT+TGG + chr5.4:9856606-9856625 MS.gene015206:intron 25.0%
!!! TCATGATTAGTTTAAAACTG+AGG + chr5.4:9855693-9855712 MS.gene015206:intron 25.0%
!!! TCGTTACTCTAAATTTTTTG+CGG + chr5.4:9855395-9855414 MS.gene015206:intron 25.0%
!!! TGAACAAGGTTTTGATAATT+AGG + chr5.4:9855727-9855746 MS.gene015206:intron 25.0%
!!! TGTATTGGTAATGATCATAT+TGG + chr5.4:9855841-9855860 MS.gene015206:intron 25.0%
AATAAAACATTCAGCAACCT+CGG - chr5.4:9855898-9855917 None:intergenic 30.0%
ACTTAAGGTGATACAGATAA+CGG + chr5.4:9856456-9856475 MS.gene015206:intron 30.0%
AGAGTTTACAAGCAAAATAC+CGG - chr5.4:9856586-9856605 None:intergenic 30.0%
CAACAAACTCAAAATCACTA+AGG + chr5.4:9855150-9855169 MS.gene015206:CDS 30.0%
GAAAATTGAATCGGAGAAAT+TGG - chr5.4:9854896-9854915 None:intergenic 30.0%
GAATTCATTCAAATGCTTTG+AGG + chr5.4:9855664-9855683 MS.gene015206:intron 30.0%
GATACTGGTGATAATTATGT+TGG + chr5.4:9856029-9856048 MS.gene015206:intron 30.0%
TACTGTGATTCTGTTAATTC+TGG + chr5.4:9855354-9855373 MS.gene015206:CDS 30.0%
TGAAAATTAGGGTTTACGAT+TGG + chr5.4:9855610-9855629 MS.gene015206:intron 30.0%
TGAGATGATTCAGAATTACA+AGG + chr5.4:9855111-9855130 MS.gene015206:CDS 30.0%
! GTTTGATTAGTTCAAAACTG+AGG + chr5.4:9855977-9855996 MS.gene015206:intron 30.0%
! TGGATTTGAGGATTTAAGTT+TGG + chr5.4:9855960-9855979 MS.gene015206:intron 30.0%
!! AATTTTGTTTAGGCTTGTTC+TGG + chr5.4:9855004-9855023 MS.gene015206:intron 30.0%
!!! TATTTTGTAATTGACTTGGC+TGG + chr5.4:9856097-9856116 MS.gene015206:intron 30.0%
!!! TTGAAGTCTTGTTTTGATAC+TGG + chr5.4:9856014-9856033 MS.gene015206:intron 30.0%
AGGTTACTGAATGTTGAACA+AGG + chr5.4:9855713-9855732 MS.gene015206:intron 35.0%
ATCAAGAAGCTGACAATGAA+CGG - chr5.4:9855032-9855051 None:intergenic 35.0%
ATGAACTCCAGATTATCCAA+CGG - chr5.4:9855318-9855337 None:intergenic 35.0%
GCTTGATAAATTCTAAACCG+AGG + chr5.4:9855878-9855897 MS.gene015206:intron 35.0%
GTGCATAGATCTAACACTTA+AGG + chr5.4:9856441-9856460 MS.gene015206:intron 35.0%
GTTTCGAATGTTCACCATAA+CGG + chr5.4:9856912-9856931 MS.gene015206:CDS 35.0%
TCGAAATTCACCTTATGCAT+CGG - chr5.4:9855076-9855095 None:intergenic 35.0%
TCGTCTAGGAGACAAATTAT+TGG - chr5.4:9856880-9856899 None:intergenic 35.0%
TGATGCTAATCTTAATTGCG+TGG + chr5.4:9855447-9855466 MS.gene015206:intron 35.0%
TTCCTTCTCAAGACTATCAA+TGG - chr5.4:9856494-9856513 None:intergenic 35.0%
TTGTATGCTACTGATGACAA+TGG + chr5.4:9856702-9856721 MS.gene015206:CDS 35.0%
TTTCGAATGTTCACCATAAC+GGG + chr5.4:9856913-9856932 MS.gene015206:CDS 35.0%
! ATAATCTGGAGTTCATGCAA+TGG + chr5.4:9855322-9855341 MS.gene015206:CDS 35.0%
! ATAATTTGTCTCCTAGACGA+AGG + chr5.4:9856880-9856899 MS.gene015206:CDS 35.0%
! ATCCATTGATAGTCTTGAGA+AGG + chr5.4:9856489-9856508 MS.gene015206:CDS 35.0%
! TCAGTTATAATCCTTTGGAG+AGG + chr5.4:9856137-9856156 MS.gene015206:intron 35.0%
! TTGATTTTCGCAGCATATTG+AGG + chr5.4:9855269-9855288 MS.gene015206:intron 35.0%
!! GAAGTGTCTTGTTGTTGTAT+TGG + chr5.4:9855826-9855845 MS.gene015206:intron 35.0%
AATTGGAACCTCTTCGACTT+TGG - chr5.4:9854879-9854898 None:intergenic 40.0%
AGTACCTGTTGATCATATGC+AGG - chr5.4:9856370-9856389 None:intergenic 40.0%
GAGTTGAATTGATCCAAGAG+AGG - chr5.4:9854841-9854860 None:intergenic 40.0%
TACTGCAAACCATGCAAATC+CGG + chr5.4:9856294-9856313 MS.gene015206:CDS 40.0%
TCCTGAAGTAGAACATTCAC+CGG + chr5.4:9856564-9856583 MS.gene015206:CDS 40.0%
TGATGACAATGGATCTGAGT+TGG + chr5.4:9856713-9856732 MS.gene015206:CDS 40.0%
TGGAATTGTTCCGATGCATA+AGG + chr5.4:9855063-9855082 MS.gene015206:CDS 40.0%
TTATGCATCGGAACAATTCC+AGG - chr5.4:9855064-9855083 None:intergenic 40.0%
AAAGAACTTTGCCAACCCTG+AGG + chr5.4:9856839-9856858 MS.gene015206:CDS 45.0%
ACACTCTCAACCCTCAAACA+AGG + chr5.4:9856210-9856229 MS.gene015206:CDS 45.0%
ACATCAGAAAGCCTTCGTCT+AGG - chr5.4:9856894-9856913 None:intergenic 45.0%
ACCGGTGAATGTTCTACTTC+AGG - chr5.4:9856568-9856587 None:intergenic 45.0%
AGCTCCTGCATATGATCAAC+AGG + chr5.4:9856363-9856382 MS.gene015206:CDS 45.0%
AGGAAGACCGTTGGATAATC+TGG + chr5.4:9855308-9855327 MS.gene015206:CDS 45.0%
ATCATTCCTTCGAGCAGTGT+GGG - chr5.4:9856269-9856288 None:intergenic 45.0%
ATGGATGCTGCATACTTCGT+CGG + chr5.4:9854803-9854822 MS.gene015206:CDS 45.0%
CAATCTCTCCAAAGTCGAAG+AGG + chr5.4:9854868-9854887 MS.gene015206:CDS 45.0%
CACTCTCAACCCTCAAACAA+GGG + chr5.4:9856211-9856230 MS.gene015206:CDS 45.0%
CTGTTAATTCTGGACAGCAC+AGG + chr5.4:9855364-9855383 MS.gene015206:CDS 45.0%
GCATATTGAGGTTAGCAAGC+TGG + chr5.4:9855281-9855300 MS.gene015206:intron 45.0%
GGCGACGAACATTGGAATAA+TGG + chr5.4:9854784-9854803 MS.gene015206:CDS 45.0%
TCCTCAGAAACCTCAGCAAT+GGG - chr5.4:9856792-9856811 None:intergenic 45.0%
! AGTAGAACCACCCTTGTTTG+AGG - chr5.4:9856224-9856243 None:intergenic 45.0%
! GCAGATCTGAAATCCTCTCT+TGG + chr5.4:9854825-9854844 MS.gene015206:CDS 45.0%
! GTAGAACCACCCTTGTTTGA+GGG - chr5.4:9856223-9856242 None:intergenic 45.0%
! TATGCTTACTGCTGGTCTAC+AGG + chr5.4:9856749-9856768 MS.gene015206:CDS 45.0%
AATCTTCCCACACTGCTCGA+AGG + chr5.4:9856260-9856279 MS.gene015206:CDS 50.0%
CACATCTCTCTCCTCTCCAA+AGG - chr5.4:9856151-9856170 None:intergenic 50.0%
CATCATTCCTTCGAGCAGTG+TGG - chr5.4:9856270-9856289 None:intergenic 50.0%
CCTCAGAAACCTCAGCAATG+GGG - chr5.4:9856791-9856810 None:intergenic 50.0%
CGGAACAATTCCAGGATGAG+CGG - chr5.4:9855056-9855075 None:intergenic 50.0%
CTCCTCAGAAACCTCAGCAA+TGG - chr5.4:9856793-9856812 None:intergenic 50.0%
GAGGTTAGCAAGCTGGTGAA+AGG + chr5.4:9855288-9855307 MS.gene015206:CDS 50.0%
GCTCAAGCTATGCTTACTGC+TGG + chr5.4:9856741-9856760 MS.gene015206:CDS 50.0%
TCATGAGAGGTGACCCGTTA+TGG - chr5.4:9856929-9856948 None:intergenic 50.0%
TCTCAACCCTCAAACAAGGG+TGG + chr5.4:9856214-9856233 MS.gene015206:CDS 50.0%
TGCAAACCATGCAAATCCGG+TGG + chr5.4:9856297-9856316 MS.gene015206:CDS 50.0%
TTGCAACCACCGGATTTGCA+TGG - chr5.4:9856306-9856325 None:intergenic 50.0%
! AGGGTGGTTCTACTTCACAC+AGG + chr5.4:9856230-9856249 MS.gene015206:CDS 50.0%
! CTAGCAGCTTTTGCAACCAC+CGG - chr5.4:9856316-9856335 None:intergenic 50.0%
ACCTCAGCAATGGGGCTCAA+TGG - chr5.4:9856783-9856802 None:intergenic 55.0%
AGCAGCATCAACCTCAGGGT+TGG - chr5.4:9856853-9856872 None:intergenic 55.0%
CCCCATTGCTGAGGTTTCTG+AGG + chr5.4:9856788-9856807 MS.gene015206:CDS 55.0%
CGAGCAGTGTGGGAAGATTG+AGG - chr5.4:9856259-9856278 None:intergenic 55.0%
CGGTGGTTGCAAAAGCTGCT+AGG + chr5.4:9856314-9856333 MS.gene015206:CDS 55.0%
CTTCTTGATGCCGCTCATCC+TGG + chr5.4:9855043-9855062 MS.gene015206:CDS 55.0%
GAGAGGAGAGAGATGTGCAG+GGG + chr5.4:9856154-9856173 MS.gene015206:CDS 55.0%
GCAGTGTGGGAAGATTGAGG+AGG - chr5.4:9856256-9856275 None:intergenic 55.0%
GCTGGTGAAAGGAAGACCGT+TGG + chr5.4:9855299-9855318 MS.gene015206:CDS 55.0%
GGAGAGGAGAGAGATGTGCA+GGG + chr5.4:9856153-9856172 MS.gene015206:CDS 55.0%
TGCCAGCAGCATCAACCTCA+GGG - chr5.4:9856857-9856876 None:intergenic 55.0%
TGGAGAGGAGAGAGATGTGC+AGG + chr5.4:9856152-9856171 MS.gene015206:CDS 55.0%
!! AACCCTGAGGTTGATGCTGC+TGG + chr5.4:9856852-9856871 MS.gene015206:CDS 55.0%
AGAGAGATGTGCAGGGGAGG+AGG + chr5.4:9856160-9856179 MS.gene015206:CDS 60.0%
AGCTGCAGCAACAGCAGCGA+CGG - chr5.4:9856347-9856366 None:intergenic 60.0%
AGGAGAGAGATGTGCAGGGG+AGG + chr5.4:9856157-9856176 MS.gene015206:CDS 60.0%
GCCATTGAGCCCCATTGCTG+AGG + chr5.4:9856779-9856798 MS.gene015206:CDS 60.0%
GTGCCAGCAGCATCAACCTC+AGG - chr5.4:9856858-9856877 None:intergenic 60.0%
GAGATGTGCAGGGGAGGAGG+AGG + chr5.4:9856163-9856182 MS.gene015206:CDS 65.0%
GCAACAGCAGCGACGGCAGC+AGG - chr5.4:9856340-9856359 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 9854782 9856953 9854782 ID=MS.gene015206
chr5.4 mRNA 9854782 9856953 9854782 ID=MS.gene015206.t1;Parent=MS.gene015206
chr5.4 exon 9854782 9854889 9854782 ID=MS.gene015206.t1.exon1;Parent=MS.gene015206.t1
chr5.4 CDS 9854782 9854889 9854782 ID=cds.MS.gene015206.t1;Parent=MS.gene015206.t1
chr5.4 exon 9855016 9855171 9855016 ID=MS.gene015206.t1.exon2;Parent=MS.gene015206.t1
chr5.4 CDS 9855016 9855171 9855016 ID=cds.MS.gene015206.t1;Parent=MS.gene015206.t1
chr5.4 exon 9855282 9855385 9855282 ID=MS.gene015206.t1.exon3;Parent=MS.gene015206.t1
chr5.4 CDS 9855282 9855385 9855282 ID=cds.MS.gene015206.t1;Parent=MS.gene015206.t1
chr5.4 exon 9856141 9856384 9856141 ID=MS.gene015206.t1.exon4;Parent=MS.gene015206.t1
chr5.4 CDS 9856141 9856384 9856141 ID=cds.MS.gene015206.t1;Parent=MS.gene015206.t1
chr5.4 exon 9856472 9856585 9856472 ID=MS.gene015206.t1.exon5;Parent=MS.gene015206.t1
chr5.4 CDS 9856472 9856585 9856472 ID=cds.MS.gene015206.t1;Parent=MS.gene015206.t1
chr5.4 exon 9856678 9856953 9856678 ID=MS.gene015206.t1.exon6;Parent=MS.gene015206.t1
chr5.4 CDS 9856678 9856953 9856678 ID=cds.MS.gene015206.t1;Parent=MS.gene015206.t1
Gene Sequence

>MS.gene015206

ATGGCGACGAACATTGGAATAATGGATGCTGCATACTTCGTCGGCAGATCTGAAATCCTCTCTTGGATCAATTCAACTCTTCAACTCAATCTCTCCAAAGTCGAAGAGGTTCCAATTTCTCCGATTCAATTTTCTTCAATTTTCATCGTTTTTCGTTGATTTTGTTTTAGGTTTTTGATTTACTGTTAATAATTTGATAGATCTGATTTTGTTGAATTGTGAAATTTTGTTTAGGCTTGTTCTGGTGCCGTTCATTGTCAGCTTCTTGATGCCGCTCATCCTGGAATTGTTCCGATGCATAAGGTGAATTTCGATGCGAAGAATGAGTATGAGATGATTCAGAATTACAAGGTTCTTCAAGATGTTTTCAACAAACTCAAAATCACTAAGGTAAATTTCGATTTTCGGTTGCGTTCTGATTTTCGTTTTTCTTTGAGATCTTGCGATTTTTCCGATTCGTGATTTTCTTAATTTTTTTATTTTGATTTTGATTTTCGCAGCATATTGAGGTTAGCAAGCTGGTGAAAGGAAGACCGTTGGATAATCTGGAGTTCATGCAATGGATGAAACGATACTGTGATTCTGTTAATTCTGGACAGCACAGGTAATTTAATCGTTACTCTAAATTTTTTGCGGATGCGTTTATTGTTTCTGTTGAAAATTTCTGATGCTAATCTTAATTGCGTGGAATTGTTATCTTTGAATTTGATAATTAGGTTTTATGATTGGAAATTTGTAATTCTACTGACGAACATATGTGATTAGAGTTAAAATTCAAATTTAATTTCATATTCAAATGTTTTAATGAAAATTTTCTGGATGAAATCTTGAAAATTAGGGTTTACGATTGGAGTTCTGTAATTCTGCTGATATATACGATTAGAATTCATTCAAATGCTTTGAGGATTGAATCATGATTAGTTTAAAACTGAGGTTACTGAATGTTGAACAAGGTTTTGATAATTAGGTTTTACAAGTCTATTGATGACGATATATGATTAGAATTCAAGTTCAGTTTTATATGTCTTAACTCTTAACTGTATCGAAGTGTCTTGTTGTTGTATTGGTAATGATCATATTGGATTTGAGGATTTAAGCTTGATAAATTCTAAACCGAGGTTGCTGAATGTTTTATTGAATGCGTCAAAGTCTTGTTTTGATATTGGTATTAATTATATTGGATTTGAGGATTTAAGTTTGATTAGTTCAAAACTGAGGTTGTTTTAAATGTATTGAAGTCTTGTTTTGATACTGGTGATAATTATGTTGGATTTGAGGATTTAAGTTTGGTTAGTTCAAAATTAAGGTTGCTGCATATTTTGTAATTGACTTGGCTGGCTTATGTGTTTCTTGTTTCAGTTATAATCCTTTGGAGAGGAGAGAGATGTGCAGGGGAGGAGGAGGAAGAGAAGTGAGTAAAAAATCTGCACACTCTCAACCCTCAAACAAGGGTGGTTCTACTTCACACAGGCCTCCTCAATCTTCCCACACTGCTCGAAGGAATGATGTGTCTACTGCAAACCATGCAAATCCGGTGGTTGCAAAAGCTGCTAGGCCTGCTGCCGTCGCTGCTGTTGCTGCAGCTCCTGCATATGATCAACAGGTACTTTGTTTTTATCATCTCATAGATGTTATCAAGTGATTTATGAATTATTTTAAGTGCATAGATCTAACACTTAAGGTGATACAGATAACGGAATTGAAGTTATCCATTGATAGTCTTGAGAAGGAACGAGATTTTTACTTTGCAAAACTGAGGGATATTGAGATACTTTGTCAGACTCCTGAAGTAGAACATTCACCGGTATTTTGCTTGTAAACTCTTCACTTTTGAGTATTGAAATTGGTAATTGTTGATGGGTTACTGATGAAATGTGAATTTTGTTTATGATTCAGGTTTTTGCAGCAATACAGAAGATATTGTATGCTACTGATGACAATGGATCTGAGTTGGAAGAAGCTCAAGCTATGCTTACTGCTGGTCTACAGGAAGCAGAGCCATTGAGCCCCATTGCTGAGGTTTCTGAGGAGAAGAGCAGTTCTGAAAATCTCAAGAGAAAGAACTTTGCCAACCCTGAGGTTGATGCTGCTGGCACCAATAATTTGTCTCCTAGACGAAGGCTTTCTGATGTTTCGAATGTTCACCATAACGGGTCACCTCTCATGATCTGA
Protein sequence

>MS.gene015206.t1

MATNIGIMDAAYFVGRSEILSWINSTLQLNLSKVEEACSGAVHCQLLDAAHPGIVPMHKVNFDAKNEYEMIQNYKVLQDVFNKLKITKHIEVSKLVKGRPLDNLEFMQWMKRYCDSVNSGQHSYNPLERREMCRGGGGREVSKKSAHSQPSNKGGSTSHRPPQSSHTARRNDVSTANHANPVVAKAARPAAVAAVAAAPAYDQQITELKLSIDSLEKERDFYFAKLRDIEILCQTPEVEHSPVFAAIQKILYATDDNGSELEEAQAMLTAGLQEAEPLSPIAEVSEEKSSSENLKRKNFANPEVDAAGTNNLSPRRRLSDVSNVHHNGSPLMI