Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71752.t1 | XP_013470108.1 | 93.2 | 352 | 9 | 5 | 1 | 346 | 1 | 343 | 6.80E-170 | 606.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71752.t1 | Q94G17 | 89.0 | 355 | 28 | 4 | 1 | 346 | 1 | 353 | 1.3e-169 | 597.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71752.t1 | I3SVH0 | 93.2 | 352 | 9 | 5 | 1 | 346 | 1 | 343 | 4.9e-170 | 606.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050060 | MS.gene71752 | 0.816669 | 4.91E-52 | -1.69E-46 |
| MS.gene050507 | MS.gene71752 | 0.814406 | 1.57E-51 | -1.69E-46 |
| MS.gene05081 | MS.gene71752 | 0.81185 | 5.69E-51 | -1.69E-46 |
| MS.gene051838 | MS.gene71752 | 0.822104 | 2.83E-53 | -1.69E-46 |
| MS.gene052134 | MS.gene71752 | 0.811505 | 6.77E-51 | -1.69E-46 |
| MS.gene052469 | MS.gene71752 | 0.842984 | 1.85E-58 | -1.69E-46 |
| MS.gene053330 | MS.gene71752 | 0.808274 | 3.36E-50 | -1.69E-46 |
| MS.gene054107 | MS.gene71752 | 0.821178 | 4.64E-53 | -1.69E-46 |
| MS.gene054344 | MS.gene71752 | 0.806143 | 9.49E-50 | -1.69E-46 |
| MS.gene054884 | MS.gene71752 | -0.851438 | 8.87E-61 | -1.69E-46 |
| MS.gene055539 | MS.gene71752 | 0.854442 | 1.23E-61 | -1.69E-46 |
| MS.gene055741 | MS.gene71752 | 0.811748 | 6.00E-51 | -1.69E-46 |
| MS.gene055744 | MS.gene71752 | 0.812529 | 4.05E-51 | -1.69E-46 |
| MS.gene056283 | MS.gene71752 | 0.84312 | 1.70E-58 | -1.69E-46 |
| MS.gene056633 | MS.gene71752 | 0.839162 | 1.87E-57 | -1.69E-46 |
| MS.gene057332 | MS.gene71752 | 0.839442 | 1.58E-57 | -1.69E-46 |
| MS.gene057658 | MS.gene71752 | 0.801887 | 7.28E-49 | -1.69E-46 |
| MS.gene058838 | MS.gene71752 | 0.819968 | 8.79E-53 | -1.69E-46 |
| MS.gene05914 | MS.gene71752 | 0.810478 | 1.13E-50 | -1.69E-46 |
| MS.gene059717 | MS.gene71752 | 0.85374 | 1.96E-61 | -1.69E-46 |
| MS.gene059855 | MS.gene71752 | -0.819585 | 1.08E-52 | -1.69E-46 |
| MS.gene060087 | MS.gene71752 | -0.800966 | 1.12E-48 | -1.69E-46 |
| MS.gene061231 | MS.gene71752 | 0.889265 | 2.83E-73 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71752.t1 | MTR_1g109080 | 93.182 | 352 | 9 | 5 | 1 | 346 | 1 | 343 | 0.0 | 632 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71752.t1 | AT2G01110 | 72.026 | 311 | 67 | 3 | 36 | 346 | 50 | 340 | 8.24e-150 | 426 |
Find 89 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTCTCGTGGTGCAGGTTTC+TGG | 0.175531 | 1.1:-77807579 | MS.gene71752:intron |
| CTTCTAGCAGCACCATTATT+AGG | 0.229476 | 1.1:-77806410 | MS.gene71752:CDS |
| AGGAGTTGGAGGAAGCATTT+TGG | 0.229964 | 1.1:-77808247 | MS.gene71752:CDS |
| AGAATCTTTATATCAGTTCT+AGG | 0.249354 | 1.1:-77808267 | MS.gene71752:CDS |
| ACCGATTATACAACTTCTAT+TGG | 0.263487 | 1.1:-77806549 | MS.gene71752:CDS |
| CAGTACAGGCTTGTCTTTCC+AGG | 0.298487 | 1.1:-77807295 | MS.gene71752:intron |
| CGTTAGACCTGGAATTATAA+AGG | 0.303877 | 1.1:+77807506 | None:intergenic |
| GGACAACTTGGATTGGTTAC+TGG | 0.310168 | 1.1:-77806527 | MS.gene71752:CDS |
| AGAAGAAATAATAAGAGTTT+TGG | 0.312117 | 1.1:-77809132 | MS.gene71752:CDS |
| TCAATACTTTGAGTTTGTTC+TGG | 0.314656 | 1.1:-77807328 | MS.gene71752:CDS |
| ATGAATATCCTTCCTCAGTT+CGG | 0.317891 | 1.1:-77809210 | MS.gene71752:CDS |
| TGGATATTGTGGCCTTCTCT+TGG | 0.323792 | 1.1:-77807559 | MS.gene71752:CDS |
| CCCACTCAACAACCCCTATT+CGG | 0.325105 | 1.1:-77809176 | MS.gene71752:CDS |
| ATCATAGCCTTTATAATTCC+AGG | 0.326206 | 1.1:-77807513 | MS.gene71752:CDS |
| GCATGGATGGTCAAACTTGC+TGG | 0.332429 | 1.1:-77806371 | MS.gene71752:CDS |
| CGGAATAACCTTCTCCTACT+TGG | 0.346691 | 1.1:-77807424 | MS.gene71752:CDS |
| AGAGGGAAGCTGACCCGAAT+AGG | 0.356442 | 1.1:+77809162 | None:intergenic |
| AACCTTCTCCTACTTGGTTC+TGG | 0.358897 | 1.1:-77807418 | MS.gene71752:CDS |
| TGAATATCCTTCCTCAGTTC+GGG | 0.363168 | 1.1:-77809209 | MS.gene71752:CDS |
| TTTATATCAGTTCTAGGAGT+TGG | 0.372808 | 1.1:-77808261 | MS.gene71752:CDS |
| TTCTTTGTCGAAGCTCTTCA+AGG | 0.382875 | 1.1:+77808286 | None:intergenic |
| GAGGGAAGCTGACCCGAATA+GGG | 0.387231 | 1.1:+77809163 | None:intergenic |
| CAAGTAGGAGAAGGTTATTC+CGG | 0.387764 | 1.1:+77807425 | None:intergenic |
| TCAGGAAGAAGCTCTTTATC+AGG | 0.389696 | 1.1:+77808336 | None:intergenic |
| CCCAATAGAAGTTGTATAAT+CGG | 0.391969 | 1.1:+77806548 | None:intergenic |
| CCGATTATACAACTTCTATT+GGG | 0.394706 | 1.1:-77806548 | MS.gene71752:CDS |
| ACATAAACACGGCATGGGAT+TGG | 0.398979 | 1.1:-77809250 | None:intergenic |
| TAGGGGTTGTTGAGTGGGTT+CGG | 0.400683 | 1.1:+77809181 | None:intergenic |
| CATAAACACGGCATGGGATT+GGG | 0.404732 | 1.1:-77809249 | None:intergenic |
| GGATATTGTGGCCTTCTCTT+GGG | 0.412223 | 1.1:-77807558 | MS.gene71752:CDS |
| CAACTTCTATTGGGACAACT+TGG | 0.415318 | 1.1:-77806539 | MS.gene71752:CDS |
| ATGATTTCATAGAGAATGAT+AGG | 0.415949 | 1.1:+77807531 | None:intergenic |
| ATGCTCATTTCTTTATCATC+AGG | 0.420227 | 1.1:+77808318 | None:intergenic |
| CCACTCAACAACCCCTATTC+GGG | 0.424261 | 1.1:-77809175 | MS.gene71752:CDS |
| AAAGATATGCTTGATGGTAT+AGG | 0.428767 | 1.1:-77808423 | MS.gene71752:intron |
| CTGGTTCTTATGTTCAGTAC+AGG | 0.435069 | 1.1:-77807309 | MS.gene71752:CDS |
| GACAATAAAGATATGCTTGA+TGG | 0.441520 | 1.1:-77808429 | MS.gene71752:intron |
| CATACCGGGTCTTTCTTCAA+TGG | 0.442015 | 1.1:+77809023 | None:intergenic |
| AGATTTCTTCAGTTAGCTCC+TGG | 0.442494 | 1.1:-77808159 | MS.gene71752:CDS |
| TAGTACTAAGCTGTTGTTGT+TGG | 0.450484 | 1.1:+77809067 | None:intergenic |
| GTCTTTACCTAGGTGGTGCA+TGG | 0.454573 | 1.1:-77806388 | MS.gene71752:CDS |
| GAGACCGGATGCTATCAGTT+TGG | 0.466801 | 1.1:-77806505 | MS.gene71752:CDS |
| CCTAGGTAAAGACCTAATAA+TGG | 0.468369 | 1.1:+77806398 | None:intergenic |
| CTGACACCCTCTGATTGAAC+AGG | 0.476792 | 1.1:+77808180 | None:intergenic |
| ACTGATGAGCCTAAAACAAT+TGG | 0.477239 | 1.1:+77807459 | None:intergenic |
| AACTGAGGAAGGATATTCAT+AGG | 0.479717 | 1.1:+77809213 | None:intergenic |
| TTCTTTGTCAATTATGCTGA+AGG | 0.481146 | 1.1:-77807378 | MS.gene71752:CDS |
| TTACCTAGGTGGTGCATGGA+TGG | 0.481523 | 1.1:-77806384 | MS.gene71752:CDS |
| CTTTCAGCTTTCGTTAGACC+TGG | 0.483102 | 1.1:+77807495 | None:intergenic |
| TCTATTGGGACAACTTGGAT+TGG | 0.484052 | 1.1:-77806534 | MS.gene71752:CDS |
| ACAAAGAAATTTAATGCTGC+GGG | 0.490001 | 1.1:+77807393 | None:intergenic |
| AGTACTAGTTCAACTAGGCT+TGG | 0.496819 | 1.1:-77809051 | MS.gene71752:CDS |
| ATATCAGTTCTAGGAGTTGG+AGG | 0.501945 | 1.1:-77808258 | MS.gene71752:CDS |
| CCGAATAGGGGTTGTTGAGT+GGG | 0.511640 | 1.1:+77809176 | None:intergenic |
| CCCGAATAGGGGTTGTTGAG+TGG | 0.512048 | 1.1:+77809175 | None:intergenic |
| AAACTCAAAGTATTGATCAA+TGG | 0.524905 | 1.1:+77807335 | None:intergenic |
| GACAAAGAAATTTAATGCTG+CGG | 0.531903 | 1.1:+77807392 | None:intergenic |
| ACCTCCAAACTGATAGCATC+CGG | 0.541278 | 1.1:+77806501 | None:intergenic |
| TTGGATTGGTTACTGGAGAC+CGG | 0.547880 | 1.1:-77806520 | MS.gene71752:CDS |
| TGGTATAGGTGAAGAAACAT+TGG | 0.554885 | 1.1:-77808409 | MS.gene71752:CDS |
| GTCTAACGAAAGCTGAAAGA+AGG | 0.555459 | 1.1:-77807491 | MS.gene71752:CDS |
| TGAAGCTCCTGTTCAATCAG+AGG | 0.565387 | 1.1:-77808187 | MS.gene71752:CDS |
| GTTTGGAGGTACGTTGTAGT+CGG | 0.572084 | 1.1:-77806488 | MS.gene71752:CDS |
| CTGTCTGAGTTCATCATCAA+CGG | 0.587352 | 1.1:+77809092 | None:intergenic |
| ACCGGATGCTATCAGTTTGG+AGG | 0.588400 | 1.1:-77806502 | MS.gene71752:CDS |
| GCTAGAAGAACTTGAGTGAG+AGG | 0.588816 | 1.1:+77806425 | None:intergenic |
| GTGCAGGTTTCTGGATATTG+TGG | 0.589310 | 1.1:-77807570 | MS.gene71752:intron |
| TGATAGGACTTCCCAAGAGA+AGG | 0.590331 | 1.1:+77807547 | None:intergenic |
| CGTTGTAGTCGGAGCAGTAG+TGG | 0.590777 | 1.1:-77806477 | MS.gene71752:CDS |
| CATGGATGGTCAAACTTGCT+GGG | 0.591514 | 1.1:-77806370 | MS.gene71752:CDS |
| GGAGCAACCCGAACTGAGGA+AGG | 0.591542 | 1.1:+77809202 | None:intergenic |
| TATTTCTTCTTCGACAGAGA+GGG | 0.592538 | 1.1:+77809145 | None:intergenic |
| ACCGGGTCTTTCTTCAATGG+CGG | 0.601351 | 1.1:+77809026 | None:intergenic |
| CCATTATTAGGTCTTTACCT+AGG | 0.610016 | 1.1:-77806398 | MS.gene71752:CDS |
| AGCTTAGTACTAGTTCAACT+AGG | 0.612170 | 1.1:-77809056 | MS.gene71752:CDS |
| GAAGCTCCTGTTCAATCAGA+GGG | 0.614527 | 1.1:-77808186 | MS.gene71752:CDS |
| TTATTAGGTCTTTACCTAGG+TGG | 0.622151 | 1.1:-77806395 | MS.gene71752:CDS |
| AACTTGAGTGAGAGGATCTG+TGG | 0.626725 | 1.1:+77806433 | None:intergenic |
| TACCAGAACCAAGTAGGAGA+AGG | 0.629321 | 1.1:+77807416 | None:intergenic |
| AAGGATATTCATAGGAACAG+TGG | 0.630446 | 1.1:+77809221 | None:intergenic |
| TCCGCCATTGAAGAAAGACC+CGG | 0.632868 | 1.1:-77809027 | MS.gene71752:intron |
| AGGGAAGCTGACCCGAATAG+GGG | 0.633526 | 1.1:+77809164 | None:intergenic |
| TGACCATCCATGCACCACCT+AGG | 0.640535 | 1.1:+77806381 | None:intergenic |
| TTATTTCTTCTTCGACAGAG+AGG | 0.655544 | 1.1:+77809144 | None:intergenic |
| TGCGGGTACCAGAACCAAGT+AGG | 0.676319 | 1.1:+77807410 | None:intergenic |
| GTTCGGAGCAACCCGAACTG+AGG | 0.682822 | 1.1:+77809198 | None:intergenic |
| GATATTCATAGGAACAGTGG+TGG | 0.683366 | 1.1:+77809224 | None:intergenic |
| TGAGTGAGAGGATCTGTGGA+TGG | 0.685947 | 1.1:+77806437 | None:intergenic |
| AAGGTGCTGTTGAATCACTG+TGG | 0.719291 | 1.1:-77807359 | MS.gene71752:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATTCTATATTTATCATT+GGG | + | chr1.1:77808430-77808449 | None:intergenic | 10.0% |
| !! | TTATATTCTATATTTATCAT+TGG | + | chr1.1:77808431-77808450 | None:intergenic | 10.0% |
| !!! | ATAATTAGTTTGTTTTTATT+GGG | - | chr1.1:77807691-77807710 | MS.gene71752:intron | 10.0% |
| !! | CAATAAAAACAAACTAATTA+TGG | + | chr1.1:77807692-77807711 | None:intergenic | 15.0% |
| !! | TTACATTCATAATTAATCAT+TGG | - | chr1.1:77807826-77807845 | MS.gene71752:intron | 15.0% |
| !!! | CATAATTAGTTTGTTTTTAT+TGG | - | chr1.1:77807690-77807709 | MS.gene71752:intron | 15.0% |
| !!! | CTATTTAGTATTTTCATATA+AGG | - | chr1.1:77806821-77806840 | MS.gene71752:intron | 15.0% |
| !!! | TAAAAATTTTACCTTTAAAG+TGG | + | chr1.1:77807482-77807501 | None:intergenic | 15.0% |
| !!! | TAATTAGTTTGTTTTTATTG+GGG | - | chr1.1:77807692-77807711 | MS.gene71752:intron | 15.0% |
| !!! | TTTTAGTTACTATATATTGT+AGG | + | chr1.1:77808771-77808790 | None:intergenic | 15.0% |
| !! | TACCATATATTCAAAAAGAA+AGG | + | chr1.1:77808358-77808377 | None:intergenic | 20.0% |
| !! | TAGTAACTAAAAAAAAGACT+TGG | - | chr1.1:77808779-77808798 | MS.gene71752:intron | 20.0% |
| !!! | AAATTTGACTTCTCTAAAAT+AGG | + | chr1.1:77807895-77807914 | None:intergenic | 20.0% |
| !!! | AGAAACATTGGAAAATTTTA+AGG | - | chr1.1:77807204-77807223 | MS.gene71752:intron | 20.0% |
| !!! | AGAAGAAATAATAAGAGTTT+TGG | - | chr1.1:77806469-77806488 | MS.gene71752:CDS | 20.0% |
| !!! | ATTTTAGAGAAGTCAAATTT+AGG | - | chr1.1:77807895-77807914 | MS.gene71752:intron | 20.0% |
| !!! | ATTTTTACTCAAAATATCTC+CGG | - | chr1.1:77807495-77807514 | MS.gene71752:CDS | 20.0% |
| !!! | GAATGTAATATTTTATTTCC+TGG | - | chr1.1:77807554-77807573 | MS.gene71752:CDS | 20.0% |
| !!! | TTCCTTTCTTTTTGAATATA+TGG | - | chr1.1:77808353-77808372 | MS.gene71752:CDS | 20.0% |
| ! | AAACTAATTATGGCAGAAAA+TGG | + | chr1.1:77807682-77807701 | None:intergenic | 25.0% |
| ! | AATGAAGTGAAGAAAAAACA+TGG | + | chr1.1:77806634-77806653 | None:intergenic | 25.0% |
| ! | AGAATCTTTATATCAGTTCT+AGG | - | chr1.1:77807334-77807353 | MS.gene71752:CDS | 25.0% |
| ! | AGTTTGATCATGATTTAGAT+GGG | + | chr1.1:77807991-77808010 | None:intergenic | 25.0% |
| ! | ATGATTTCATAGAGAATGAT+AGG | + | chr1.1:77808073-77808092 | None:intergenic | 25.0% |
| ! | ATTATTTGAGCTTATATCCT+TGG | + | chr1.1:77807063-77807082 | None:intergenic | 25.0% |
| ! | TAGTTTGATCATGATTTAGA+TGG | + | chr1.1:77807992-77808011 | None:intergenic | 25.0% |
| ! | TATATTTATCATTGGGTCAA+TGG | + | chr1.1:77808423-77808442 | None:intergenic | 25.0% |
| ! | TGATCAAACTAATATTGTTG+TGG | - | chr1.1:77808001-77808020 | MS.gene71752:intron | 25.0% |
| !! | ATTTTTCTTCACCACTTTAA+AGG | - | chr1.1:77807468-77807487 | MS.gene71752:CDS | 25.0% |
| !! | CTTTGCATTTTCAAAAGATT+TGG | - | chr1.1:77807381-77807400 | MS.gene71752:CDS | 25.0% |
| !! | TTTTTACTCAAAATATCTCC+GGG | - | chr1.1:77807496-77807515 | MS.gene71752:CDS | 25.0% |
| !!! | AAACTCAAAGTATTGATCAA+TGG | + | chr1.1:77808269-77808288 | None:intergenic | 25.0% |
| !!! | ATGTTTTTTCTTCACTTCAT+TGG | - | chr1.1:77806633-77806652 | MS.gene71752:intron | 25.0% |
| !!! | CTTGAAAGTTTTAAATGACT+TGG | - | chr1.1:77808696-77808715 | MS.gene71752:intron | 25.0% |
| !!! | TTGGAAAATTTTAAGGAAGA+TGG | - | chr1.1:77807211-77807230 | MS.gene71752:intron | 25.0% |
| ACAAAGAAATTTAATGCTGC+GGG | + | chr1.1:77808211-77808230 | None:intergenic | 30.0% | |
| ACCGATTATACAACTTCTAT+TGG | - | chr1.1:77809052-77809071 | MS.gene71752:CDS | 30.0% | |
| ATAAGCACTTATGAGACTTT+GGG | + | chr1.1:77807040-77807059 | None:intergenic | 30.0% | |
| ATATTACTTGATATGAGACG+TGG | + | chr1.1:77808670-77808689 | None:intergenic | 30.0% | |
| ATCATAGCCTTTATAATTCC+AGG | - | chr1.1:77808088-77808107 | MS.gene71752:intron | 30.0% | |
| ATGCTCATTTCTTTATCATC+AGG | + | chr1.1:77807286-77807305 | None:intergenic | 30.0% | |
| CCCAATAGAAGTTGTATAAT+CGG | + | chr1.1:77809056-77809075 | None:intergenic | 30.0% | |
| CCGATTATACAACTTCTATT+GGG | - | chr1.1:77809053-77809072 | MS.gene71752:CDS | 30.0% | |
| CTCAAATAAGCTAATTCGAA+CGG | - | chr1.1:77806969-77806988 | MS.gene71752:intron | 30.0% | |
| GACAAAGAAATTTAATGCTG+CGG | + | chr1.1:77808212-77808231 | None:intergenic | 30.0% | |
| GACAATAAAGATATGCTTGA+TGG | - | chr1.1:77807172-77807191 | MS.gene71752:intron | 30.0% | |
| GCATTTCATGTGAAGTTTAA+AGG | - | chr1.1:77807580-77807599 | MS.gene71752:intron | 30.0% | |
| GTAAACCTTGTGAAAATAAG+CGG | - | chr1.1:77806870-77806889 | MS.gene71752:intron | 30.0% | |
| GTAATGGTTATATCACACAA+AGG | + | chr1.1:77807957-77807976 | None:intergenic | 30.0% | |
| TAAACCTTGTGAAAATAAGC+GGG | - | chr1.1:77806871-77806890 | MS.gene71752:intron | 30.0% | |
| TAGAGAAGTCAAATTTAGGA+GGG | - | chr1.1:77807899-77807918 | MS.gene71752:intron | 30.0% | |
| TATTACATTCACAACTCACT+AGG | + | chr1.1:77807544-77807563 | None:intergenic | 30.0% | |
| TATTACTTGATATGAGACGT+GGG | + | chr1.1:77808669-77808688 | None:intergenic | 30.0% | |
| TCAAATAAGCTAATTCGAAC+GGG | - | chr1.1:77806970-77806989 | MS.gene71752:intron | 30.0% | |
| TCATTAACTAAGAGTCTGTT+TGG | + | chr1.1:77807092-77807111 | None:intergenic | 30.0% | |
| TTAGAGAAGTCAAATTTAGG+AGG | - | chr1.1:77807898-77807917 | MS.gene71752:intron | 30.0% | |
| TTCTTTGTCAATTATGCTGA+AGG | - | chr1.1:77808223-77808242 | MS.gene71752:CDS | 30.0% | |
| TTTATTCGAATTCCTAACAG+AGG | + | chr1.1:77808545-77808564 | None:intergenic | 30.0% | |
| ! | AAAGAAAGGAAGTACAAAAC+AGG | + | chr1.1:77808344-77808363 | None:intergenic | 30.0% |
| ! | AAAGATATGCTTGATGGTAT+AGG | - | chr1.1:77807178-77807197 | MS.gene71752:intron | 30.0% |
| ! | AAAGCTGAAAGAAGGTTTTT+AGG | - | chr1.1:77808118-77808137 | MS.gene71752:intron | 30.0% |
| ! | AAGCTGAAAGAAGGTTTTTA+GGG | - | chr1.1:77808119-77808138 | MS.gene71752:intron | 30.0% |
| ! | AATTCCTAACAGAGGTATAT+TGG | + | chr1.1:77808537-77808556 | None:intergenic | 30.0% |
| ! | AGCTTATTTGAGTTATGTAC+TGG | + | chr1.1:77806961-77806980 | None:intergenic | 30.0% |
| ! | ATTCCTAACAGAGGTATATT+GGG | + | chr1.1:77808536-77808555 | None:intergenic | 30.0% |
| ! | CTTTCTTTTCTTCCTAAGTT+TGG | - | chr1.1:77808993-77809012 | MS.gene71752:intron | 30.0% |
| ! | TCAATACTTTGAGTTTGTTC+TGG | - | chr1.1:77808273-77808292 | MS.gene71752:CDS | 30.0% |
| ! | TCTAAAATAGGTAGTTGGTA+AGG | + | chr1.1:77807883-77807902 | None:intergenic | 30.0% |
| ! | TTTTACTCAAAATATCTCCG+GGG | - | chr1.1:77807497-77807516 | MS.gene71752:CDS | 30.0% |
| !! | ACTTCTCTAAAATAGGTAGT+TGG | + | chr1.1:77807888-77807907 | None:intergenic | 30.0% |
| !! | TTTATATCAGTTCTAGGAGT+TGG | - | chr1.1:77807340-77807359 | MS.gene71752:CDS | 30.0% |
| !!! | CATTTTCAAAAGATTTGGTG+AGG | - | chr1.1:77807386-77807405 | MS.gene71752:CDS | 30.0% |
| !!! | TTTTTAGGGCCAATTGTTTT+AGG | - | chr1.1:77808133-77808152 | MS.gene71752:intron | 30.0% |
| AACAGGAAGAAGAAATTACC+TGG | + | chr1.1:77808327-77808346 | None:intergenic | 35.0% | |
| AACTGAGGAAGGATATTCAT+AGG | + | chr1.1:77806391-77806410 | None:intergenic | 35.0% | |
| AAGGATATTCATAGGAACAG+TGG | + | chr1.1:77806383-77806402 | None:intergenic | 35.0% | |
| AATGTTTGTGATCGATCATC+TGG | - | chr1.1:77808618-77808637 | MS.gene71752:intron | 35.0% | |
| ACTGATGAGCCTAAAACAAT+TGG | + | chr1.1:77808145-77808164 | None:intergenic | 35.0% | |
| AGCTTAGTACTAGTTCAACT+AGG | - | chr1.1:77806545-77806564 | MS.gene71752:CDS | 35.0% | |
| ATGAATATCCTTCCTCAGTT+CGG | - | chr1.1:77806391-77806410 | MS.gene71752:CDS | 35.0% | |
| ATGCCATTACAACCAAACTT+AGG | + | chr1.1:77809008-77809027 | None:intergenic | 35.0% | |
| ATGGGTATACACTACAGTAA+TGG | + | chr1.1:77807973-77807992 | None:intergenic | 35.0% | |
| ATTCGTAGCTATGGGTAATA+TGG | - | chr1.1:77808506-77808525 | MS.gene71752:intron | 35.0% | |
| CATGGTGAATTGAGAGAAAA+TGG | + | chr1.1:77806616-77806635 | None:intergenic | 35.0% | |
| CCATTATTAGGTCTTTACCT+AGG | - | chr1.1:77809203-77809222 | MS.gene71752:CDS | 35.0% | |
| CCTAGGTAAAGACCTAATAA+TGG | + | chr1.1:77809206-77809225 | None:intergenic | 35.0% | |
| CGGGTAACAACTTACAAATA+AGG | - | chr1.1:77806890-77806909 | MS.gene71752:intron | 35.0% | |
| CGTTAGACCTGGAATTATAA+AGG | + | chr1.1:77808098-77808117 | None:intergenic | 35.0% | |
| CTAAGCCATCTTGTATTTGT+AGG | - | chr1.1:77809028-77809047 | MS.gene71752:CDS | 35.0% | |
| CTTCCTAAGTTTGGTTGTAA+TGG | - | chr1.1:77809002-77809021 | MS.gene71752:intron | 35.0% | |
| GATAAGCACTTATGAGACTT+TGG | + | chr1.1:77807041-77807060 | None:intergenic | 35.0% | |
| GGTTATATCACACAAAGGTT+GGG | + | chr1.1:77807952-77807971 | None:intergenic | 35.0% | |
| TAGTACTAAGCTGTTGTTGT+TGG | + | chr1.1:77806537-77806556 | None:intergenic | 35.0% | |
| TATCCCAATATACCTCTGTT+AGG | - | chr1.1:77808530-77808549 | MS.gene71752:intron | 35.0% | |
| TATTTCTTCTTCGACAGAGA+GGG | + | chr1.1:77806459-77806478 | None:intergenic | 35.0% | |
| TGGTAAGGTGAGAAAATCAA+AGG | + | chr1.1:77807868-77807887 | None:intergenic | 35.0% | |
| TGGTATAGGTGAAGAAACAT+TGG | - | chr1.1:77807192-77807211 | MS.gene71752:intron | 35.0% | |
| TGGTTATATCACACAAAGGT+TGG | + | chr1.1:77807953-77807972 | None:intergenic | 35.0% | |
| TTATTAGGTCTTTACCTAGG+TGG | - | chr1.1:77809206-77809225 | MS.gene71752:CDS | 35.0% | |
| TTTATCACTGTCGAACAATG+TGG | - | chr1.1:77808735-77808754 | MS.gene71752:intron | 35.0% | |
| ! | ACTGCAGTTTAGAATAGCTT+AGG | + | chr1.1:77806734-77806753 | None:intergenic | 35.0% |
| ! | CGTAAGATTTTACCTTGATG+TGG | - | chr1.1:77808901-77808920 | MS.gene71752:intron | 35.0% |
| ! | TGGATTTTGCTCTAACATAC+CGG | + | chr1.1:77806596-77806615 | None:intergenic | 35.0% |
| ! | TTATTTCTTCTTCGACAGAG+AGG | + | chr1.1:77806460-77806479 | None:intergenic | 35.0% |
| ! | TTGCAGTATTGCTATTGAGT+TGG | - | chr1.1:77808575-77808594 | MS.gene71752:intron | 35.0% |
| !! | TTCACTTCATTGGTCTTGTT+TGG | - | chr1.1:77806643-77806662 | MS.gene71752:intron | 35.0% |
| !!! | TATCACGTTCTTTTGGAGTT+TGG | - | chr1.1:77808858-77808877 | MS.gene71752:intron | 35.0% |
| AAGACTTTGATCTTTCACCC+TGG | + | chr1.1:77807637-77807656 | None:intergenic | 40.0% | |
| ACATTCACAACTCACTAGGT+AGG | + | chr1.1:77807540-77807559 | None:intergenic | 40.0% | |
| AGATTTCTTCAGTTAGCTCC+TGG | - | chr1.1:77807442-77807461 | MS.gene71752:CDS | 40.0% | |
| AGGCAACTCACTCTAAATTG+AGG | - | chr1.1:77807735-77807754 | MS.gene71752:intron | 40.0% | |
| AGTACTAGTTCAACTAGGCT+TGG | - | chr1.1:77806550-77806569 | MS.gene71752:CDS | 40.0% | |
| ATCAGGTCAATTCGTAGCTA+TGG | - | chr1.1:77808497-77808516 | MS.gene71752:intron | 40.0% | |
| CAACTTCTATTGGGACAACT+TGG | - | chr1.1:77809062-77809081 | MS.gene71752:CDS | 40.0% | |
| CAAGTAGGAGAAGGTTATTC+CGG | + | chr1.1:77808179-77808198 | None:intergenic | 40.0% | |
| CATTCACAACTCACTAGGTA+GGG | + | chr1.1:77807539-77807558 | None:intergenic | 40.0% | |
| CGATCCAGCTACTCTTAAAT+AGG | - | chr1.1:77807715-77807734 | MS.gene71752:intron | 40.0% | |
| CGGTACCTACAAATACAAGA+TGG | + | chr1.1:77809036-77809055 | None:intergenic | 40.0% | |
| CTAATATTGTTGTGGTCTCG+TGG | - | chr1.1:77808009-77808028 | MS.gene71752:intron | 40.0% | |
| CTGTCTGAGTTCATCATCAA+CGG | + | chr1.1:77806512-77806531 | None:intergenic | 40.0% | |
| CTTCTAGCAGCACCATTATT+AGG | - | chr1.1:77809191-77809210 | MS.gene71752:CDS | 40.0% | |
| GAAGGAAGTAAAAAACACCC+CGG | + | chr1.1:77807517-77807536 | None:intergenic | 40.0% | |
| GATATTCATAGGAACAGTGG+TGG | + | chr1.1:77806380-77806399 | None:intergenic | 40.0% | |
| GTCTAACGAAAGCTGAAAGA+AGG | - | chr1.1:77808110-77808129 | MS.gene71752:intron | 40.0% | |
| GTCTCATAAGTGCTTATCCA+AGG | - | chr1.1:77807043-77807062 | MS.gene71752:intron | 40.0% | |
| GTCTTGTGGCAAGTATCAAT+CGG | + | chr1.1:77808401-77808420 | None:intergenic | 40.0% | |
| GTGGTGAAGAAAAATTCACC+AGG | + | chr1.1:77807463-77807482 | None:intergenic | 40.0% | |
| GTTGCCTATTTAAGAGTAGC+TGG | + | chr1.1:77807722-77807741 | None:intergenic | 40.0% | |
| TCAGGAAGAAGCTCTTTATC+AGG | + | chr1.1:77807268-77807287 | None:intergenic | 40.0% | |
| TCAGGTCAATTCGTAGCTAT+GGG | - | chr1.1:77808498-77808517 | MS.gene71752:intron | 40.0% | |
| TCTATTGGGACAACTTGGAT+TGG | - | chr1.1:77809067-77809086 | MS.gene71752:CDS | 40.0% | |
| TGAATATCCTTCCTCAGTTC+GGG | - | chr1.1:77806392-77806411 | MS.gene71752:CDS | 40.0% | |
| TGTGATCGATCATCTGGATT+GGG | - | chr1.1:77808624-77808643 | MS.gene71752:intron | 40.0% | |
| TTACCTTGATGTGGTTCTTG+AGG | - | chr1.1:77808910-77808929 | MS.gene71752:intron | 40.0% | |
| TTCTTTGTCGAAGCTCTTCA+AGG | + | chr1.1:77807318-77807337 | None:intergenic | 40.0% | |
| TTGTGATCGATCATCTGGAT+TGG | - | chr1.1:77808623-77808642 | MS.gene71752:intron | 40.0% | |
| TTTCCTCAAGAACCACATCA+AGG | + | chr1.1:77808916-77808935 | None:intergenic | 40.0% | |
| ! | AAACTCTGTCAAGTTGCCAA+CGG | + | chr1.1:77807613-77807632 | None:intergenic | 40.0% |
| ! | CAACTTGACAGAGTTTTCCA+GGG | - | chr1.1:77807617-77807636 | MS.gene71752:intron | 40.0% |
| ! | CTGGTTCTTATGTTCAGTAC+AGG | - | chr1.1:77808292-77808311 | MS.gene71752:CDS | 40.0% |
| ! | GAGTGCTTATCACGTTCTTT+TGG | - | chr1.1:77808851-77808870 | MS.gene71752:intron | 40.0% |
| ! | GGATTTTGCTCTAACATACC+GGG | + | chr1.1:77806595-77806614 | None:intergenic | 40.0% |
| ! | TCATCAGTTCTTTTCTACGC+CGG | - | chr1.1:77808157-77808176 | MS.gene71752:CDS | 40.0% |
| !! | ATATCAGTTCTAGGAGTTGG+AGG | - | chr1.1:77807343-77807362 | MS.gene71752:CDS | 40.0% |
| !! | GTTACCCGCTTATTTTCACA+AGG | + | chr1.1:77806878-77806897 | None:intergenic | 40.0% |
| !! | GTTTAAAGGTGCTATACCGT+TGG | - | chr1.1:77807594-77807613 | MS.gene71752:intron | 40.0% |
| !! | TTTTTAAGCATGCCTGCATC+AGG | - | chr1.1:77808480-77808499 | MS.gene71752:intron | 40.0% |
| AACCTTCTCCTACTTGGTTC+TGG | - | chr1.1:77808183-77808202 | MS.gene71752:CDS | 45.0% | |
| AACTTGAGTGAGAGGATCTG+TGG | + | chr1.1:77809171-77809190 | None:intergenic | 45.0% | |
| ACCTCCAAACTGATAGCATC+CGG | + | chr1.1:77809103-77809122 | None:intergenic | 45.0% | |
| ATTGGGACATGGGTATAACG+GGG | - | chr1.1:77808641-77808660 | MS.gene71752:intron | 45.0% | |
| CATACCGGGTCTTTCTTCAA+TGG | + | chr1.1:77806581-77806600 | None:intergenic | 45.0% | |
| CCTTAAAAGCCAGCTCTCAA+GGG | + | chr1.1:77808812-77808831 | None:intergenic | 45.0% | |
| CGGAATAACCTTCTCCTACT+TGG | - | chr1.1:77808177-77808196 | MS.gene71752:CDS | 45.0% | |
| CTTCACATGAAATGCATGCC+AGG | + | chr1.1:77807575-77807594 | None:intergenic | 45.0% | |
| CTTTCAGCTTTCGTTAGACC+TGG | + | chr1.1:77808109-77808128 | None:intergenic | 45.0% | |
| GAAGCTCCTGTTCAATCAGA+GGG | - | chr1.1:77807415-77807434 | MS.gene71752:CDS | 45.0% | |
| GATTGGGACATGGGTATAAC+GGG | - | chr1.1:77808640-77808659 | MS.gene71752:intron | 45.0% | |
| GCTAGAAGAACTTGAGTGAG+AGG | + | chr1.1:77809179-77809198 | None:intergenic | 45.0% | |
| GGATATTGTGGCCTTCTCTT+GGG | - | chr1.1:77808043-77808062 | MS.gene71752:intron | 45.0% | |
| GGATTGGGACATGGGTATAA+CGG | - | chr1.1:77808639-77808658 | MS.gene71752:intron | 45.0% | |
| TACCAGAACCAAGTAGGAGA+AGG | + | chr1.1:77808188-77808207 | None:intergenic | 45.0% | |
| TGAAGCTCCTGTTCAATCAG+AGG | - | chr1.1:77807414-77807433 | MS.gene71752:CDS | 45.0% | |
| TGATAGGACTTCCCAAGAGA+AGG | + | chr1.1:77808057-77808076 | None:intergenic | 45.0% | |
| TGGATATTGTGGCCTTCTCT+TGG | - | chr1.1:77808042-77808061 | MS.gene71752:intron | 45.0% | |
| ! | CATGGATGGTCAAACTTGCT+GGG | - | chr1.1:77809231-77809250 | MS.gene71752:CDS | 45.0% |
| ! | GATCATCTGGATTGGGACAT+GGG | - | chr1.1:77808631-77808650 | MS.gene71752:intron | 45.0% |
| ! | GCAACTTGACAGAGTTTTCC+AGG | - | chr1.1:77807616-77807635 | MS.gene71752:intron | 45.0% |
| ! | GTGCAGGTTTCTGGATATTG+TGG | - | chr1.1:77808031-77808050 | MS.gene71752:intron | 45.0% |
| ! | GTTTGGAGGTACGTTGTAGT+CGG | - | chr1.1:77809113-77809132 | MS.gene71752:CDS | 45.0% |
| ! | TCATTGGGTCAATGGTCTTG+TGG | + | chr1.1:77808415-77808434 | None:intergenic | 45.0% |
| !! | AAGGTGCTGTTGAATCACTG+TGG | - | chr1.1:77808242-77808261 | MS.gene71752:CDS | 45.0% |
| !! | ATCAATCGGTGTCAGCTAGA+AGG | + | chr1.1:77808387-77808406 | None:intergenic | 45.0% |
| !! | GGACAACTTGGATTGGTTAC+TGG | - | chr1.1:77809074-77809093 | MS.gene71752:CDS | 45.0% |
| !! | TTGGATTGGTTACTGGAGAC+CGG | - | chr1.1:77809081-77809100 | MS.gene71752:CDS | 45.0% |
| !!! | AGGAGTTGGAGGAAGCATTT+TGG | - | chr1.1:77807354-77807373 | MS.gene71752:CDS | 45.0% |
| !!! | CCTTGAGAGCTGGCTTTTAA+GGG | - | chr1.1:77808810-77808829 | MS.gene71752:intron | 45.0% |
| !!! | GGAGTTGGAGGAAGCATTTT+GGG | - | chr1.1:77807355-77807374 | MS.gene71752:CDS | 45.0% |
| ACCGGATGCTATCAGTTTGG+AGG | - | chr1.1:77809099-77809118 | MS.gene71752:CDS | 50.0% | |
| ACCGGGTCTTTCTTCAATGG+CGG | + | chr1.1:77806578-77806597 | None:intergenic | 50.0% | |
| CACAACTCACTAGGTAGGGA+AGG | + | chr1.1:77807535-77807554 | None:intergenic | 50.0% | |
| CAGTACAGGCTTGTCTTTCC+AGG | - | chr1.1:77808306-77808325 | MS.gene71752:CDS | 50.0% | |
| CCACTCAACAACCCCTATTC+GGG | - | chr1.1:77806426-77806445 | MS.gene71752:CDS | 50.0% | |
| CCCACTCAACAACCCCTATT+CGG | - | chr1.1:77806425-77806444 | MS.gene71752:CDS | 50.0% | |
| CCCTTAAAAGCCAGCTCTCA+AGG | + | chr1.1:77808813-77808832 | None:intergenic | 50.0% | |
| CCGAATAGGGGTTGTTGAGT+GGG | + | chr1.1:77806428-77806447 | None:intergenic | 50.0% | |
| CTGACACCCTCTGATTGAAC+AGG | + | chr1.1:77807424-77807443 | None:intergenic | 50.0% | |
| GAGACCGGATGCTATCAGTT+TGG | - | chr1.1:77809096-77809115 | MS.gene71752:CDS | 50.0% | |
| GCATGGATGGTCAAACTTGC+TGG | - | chr1.1:77809230-77809249 | MS.gene71752:CDS | 50.0% | |
| GCTACGAATTGACCTGATGC+AGG | + | chr1.1:77808495-77808514 | None:intergenic | 50.0% | |
| GTCTTTACCTAGGTGGTGCA+TGG | - | chr1.1:77809213-77809232 | MS.gene71752:CDS | 50.0% | |
| TCCGCCATTGAAGAAAGACC+CGG | - | chr1.1:77806574-77806593 | MS.gene71752:intron | 50.0% | |
| TGAGTGAGAGGATCTGTGGA+TGG | + | chr1.1:77809167-77809186 | None:intergenic | 50.0% | |
| TTACCTAGGTGGTGCATGGA+TGG | - | chr1.1:77809217-77809236 | MS.gene71752:CDS | 50.0% | |
| ! | CGATCATCTGGATTGGGACA+TGG | - | chr1.1:77808630-77808649 | MS.gene71752:intron | 50.0% |
| ! | TAGGGGTTGTTGAGTGGGTT+CGG | + | chr1.1:77806423-77806442 | None:intergenic | 50.0% |
| !!! | CCCTTGAGAGCTGGCTTTTA+AGG | - | chr1.1:77808809-77808828 | MS.gene71752:intron | 50.0% |
| AGAGGGAAGCTGACCCGAAT+AGG | + | chr1.1:77806442-77806461 | None:intergenic | 55.0% | |
| AGGGAAGCTGACCCGAATAG+GGG | + | chr1.1:77806440-77806459 | None:intergenic | 55.0% | |
| CCCGAATAGGGGTTGTTGAG+TGG | + | chr1.1:77806429-77806448 | None:intergenic | 55.0% | |
| CGTTGTAGTCGGAGCAGTAG+TGG | - | chr1.1:77809124-77809143 | MS.gene71752:CDS | 55.0% | |
| GAGGGAAGCTGACCCGAATA+GGG | + | chr1.1:77806441-77806460 | None:intergenic | 55.0% | |
| GGTTCTTCTCCCTTGAGAGC+TGG | - | chr1.1:77808800-77808819 | MS.gene71752:intron | 55.0% | |
| TGACCATCCATGCACCACCT+AGG | + | chr1.1:77809223-77809242 | None:intergenic | 55.0% | |
| TGCGGGTACCAGAACCAAGT+AGG | + | chr1.1:77808194-77808213 | None:intergenic | 55.0% | |
| TTGTTGTGGTCTCGTGGTGC+AGG | - | chr1.1:77808015-77808034 | MS.gene71752:intron | 55.0% | |
| GGAGCAACCCGAACTGAGGA+AGG | + | chr1.1:77806402-77806421 | None:intergenic | 60.0% | |
| GGTCTCGTGGTGCAGGTTTC+TGG | - | chr1.1:77808022-77808041 | MS.gene71752:intron | 60.0% | |
| GTTCGGAGCAACCCGAACTG+AGG | + | chr1.1:77806406-77806425 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 77806364 | 77809259 | 77806364 | ID=MS.gene71752 |
| chr1.1 | mRNA | 77806364 | 77809259 | 77806364 | ID=MS.gene71752.t1;Parent=MS.gene71752 |
| chr1.1 | exon | 77809028 | 77809259 | 77809028 | ID=MS.gene71752.t1.exon1;Parent=MS.gene71752.t1 |
| chr1.1 | CDS | 77809028 | 77809259 | 77809028 | ID=cds.MS.gene71752.t1;Parent=MS.gene71752.t1 |
| chr1.1 | exon | 77808134 | 77808441 | 77808134 | ID=MS.gene71752.t1.exon2;Parent=MS.gene71752.t1 |
| chr1.1 | CDS | 77808134 | 77808441 | 77808134 | ID=cds.MS.gene71752.t1;Parent=MS.gene71752.t1 |
| chr1.1 | exon | 77807296 | 77807586 | 77807296 | ID=MS.gene71752.t1.exon3;Parent=MS.gene71752.t1 |
| chr1.1 | CDS | 77807296 | 77807586 | 77807296 | ID=cds.MS.gene71752.t1;Parent=MS.gene71752.t1 |
| chr1.1 | exon | 77806364 | 77806573 | 77806364 | ID=MS.gene71752.t1.exon4;Parent=MS.gene71752.t1 |
| chr1.1 | CDS | 77806364 | 77806573 | 77806364 | ID=cds.MS.gene71752.t1;Parent=MS.gene71752.t1 |
| Gene Sequence |
| Protein sequence |
