Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71785.t1 | XP_003592607.1 | 97.1 | 275 | 8 | 0 | 1 | 275 | 1 | 275 | 9.70E-151 | 542.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71785.t1 | G7IC71 | 97.1 | 275 | 8 | 0 | 1 | 275 | 1 | 275 | 7.0e-151 | 542.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050084 | MS.gene71785 | 0.802502 | 5.44E-49 | -1.69E-46 |
| MS.gene050085 | MS.gene71785 | 0.801999 | 6.91E-49 | -1.69E-46 |
| MS.gene050359 | MS.gene71785 | 0.845962 | 2.93E-59 | -1.69E-46 |
| MS.gene050361 | MS.gene71785 | 0.806177 | 9.33E-50 | -1.69E-46 |
| MS.gene050414 | MS.gene71785 | 0.801752 | 7.76E-49 | -1.69E-46 |
| MS.gene050551 | MS.gene71785 | 0.825615 | 4.26E-54 | -1.69E-46 |
| MS.gene050646 | MS.gene71785 | 0.832586 | 8.69E-56 | -1.69E-46 |
| MS.gene050654 | MS.gene71785 | 0.830528 | 2.79E-55 | -1.69E-46 |
| MS.gene051043 | MS.gene71785 | 0.821315 | 4.31E-53 | -1.69E-46 |
| MS.gene051343 | MS.gene71785 | 0.807291 | 5.43E-50 | -1.69E-46 |
| MS.gene052307 | MS.gene71785 | 0.806974 | 6.34E-50 | -1.69E-46 |
| MS.gene052609 | MS.gene71785 | 0.838566 | 2.66E-57 | -1.69E-46 |
| MS.gene052776 | MS.gene71785 | 0.82531 | 5.02E-54 | -1.69E-46 |
| MS.gene052994 | MS.gene71785 | 0.808563 | 2.91E-50 | -1.69E-46 |
| MS.gene053143 | MS.gene71785 | 0.83394 | 4.00E-56 | -1.69E-46 |
| MS.gene053620 | MS.gene71785 | 0.819191 | 1.32E-52 | -1.69E-46 |
| MS.gene054893 | MS.gene71785 | 0.800138 | 1.66E-48 | -1.69E-46 |
| MS.gene056097 | MS.gene71785 | 0.832633 | 8.46E-56 | -1.69E-46 |
| MS.gene057919 | MS.gene71785 | 0.819572 | 1.08E-52 | -1.69E-46 |
| MS.gene058638 | MS.gene71785 | 0.819888 | 9.17E-53 | -1.69E-46 |
| MS.gene058639 | MS.gene71785 | 0.803912 | 2.78E-49 | -1.69E-46 |
| MS.gene059007 | MS.gene71785 | 0.881386 | 2.51E-70 | -1.69E-46 |
| MS.gene060933 | MS.gene71785 | 0.802748 | 4.84E-49 | -1.69E-46 |
| MS.gene061006 | MS.gene71785 | 0.839782 | 1.29E-57 | -1.69E-46 |
| MS.gene061100 | MS.gene71785 | 0.826504 | 2.62E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 83 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTACGTTCCTTATCTTTC+TGG | 0.167988 | 1.3:-74796581 | MS.gene71785:CDS |
| GGTGAAGCGGTTGAGTAATT+TGG | 0.207604 | 1.3:-74797827 | MS.gene71785:CDS |
| CGGAACTGCAACTACTTTCT+TGG | 0.263092 | 1.3:+74797864 | None:intergenic |
| CAAATATACCTTGACTTTAC+AGG | 0.274062 | 1.3:+74796527 | None:intergenic |
| CACTAGAAAAGCCGTCTTGC+AGG | 0.293677 | 1.3:+74796079 | None:intergenic |
| GTTCCGCCTTACTTTGTTCT+TGG | 0.303850 | 1.3:-74796689 | MS.gene71785:CDS |
| GTGATTTGTGGGAATCGTTC+AGG | 0.306463 | 1.3:-74796667 | MS.gene71785:CDS |
| AGGACAGTGACAGTGATTTC+AGG | 0.310121 | 1.3:-74796233 | MS.gene71785:CDS |
| TCCTTACGGCCGCGAACCTT+TGG | 0.339475 | 1.3:-74795995 | MS.gene71785:CDS |
| TGTTCCCTATATCCTCTAAC+AGG | 0.340343 | 1.3:+74796177 | None:intergenic |
| CTTTGTTCTTGGTGATTTGT+GGG | 0.349988 | 1.3:-74796678 | MS.gene71785:CDS |
| ACTTTGTTCTTGGTGATTTG+TGG | 0.395248 | 1.3:-74796679 | MS.gene71785:CDS |
| GTGAACCTGTTAGAGGATAT+AGG | 0.398155 | 1.3:-74796182 | MS.gene71785:CDS |
| AGTGATTGTGAACCTGTTAG+AGG | 0.402021 | 1.3:-74796189 | MS.gene71785:CDS |
| TGAACCTGTTAGAGGATATA+GGG | 0.405268 | 1.3:-74796181 | MS.gene71785:CDS |
| TACTGCTCAGCATCTCTCTA+AGG | 0.406790 | 1.3:-74797773 | MS.gene71785:intron |
| TTGACAAGAAATTAGAGAAC+CGG | 0.408115 | 1.3:-74797903 | MS.gene71785:CDS |
| TGCAGTTCCGTCGTGTGAAC+CGG | 0.413623 | 1.3:-74797851 | MS.gene71785:CDS |
| CCGCGAACCTTTGGCTGATA+AGG | 0.413654 | 1.3:-74795986 | MS.gene71785:CDS |
| CACGAGGTCGTGGTGAGGAT+CGG | 0.422791 | 1.3:-74798053 | MS.gene71785:CDS |
| AAGAGAGAAATCGGTGGATT+CGG | 0.429307 | 1.3:-74797926 | MS.gene71785:CDS |
| TCATTGGATGGGTAGATTAT+CGG | 0.441238 | 1.3:-74796121 | MS.gene71785:CDS |
| GAATGGAGTGCTTACGGAGC+TGG | 0.441782 | 1.3:-74796644 | MS.gene71785:CDS |
| AGAAATTAGAGAACCGGGTT+GGG | 0.443635 | 1.3:-74797897 | MS.gene71785:CDS |
| GCTATTTGAGTATCTTGAAC+GGG | 0.445871 | 1.3:-74796022 | MS.gene71785:CDS |
| TTACAGGTGGCTTGGCAGAC+TGG | 0.455357 | 1.3:+74796543 | None:intergenic |
| TTCAGGGAATGGAGTGCTTA+CGG | 0.476207 | 1.3:-74796650 | MS.gene71785:CDS |
| AGAGGTCTGCAAGAAGCTTC+AGG | 0.478172 | 1.3:-74796727 | MS.gene71785:CDS |
| TTCACGCACCCTAGGAATGT+TGG | 0.478904 | 1.3:-74798094 | None:intergenic |
| TTACTCAACCGCTTCACCTC+CGG | 0.479450 | 1.3:+74797832 | None:intergenic |
| TGTGGGAATCGTTCAGGGAA+TGG | 0.482414 | 1.3:-74796661 | MS.gene71785:CDS |
| AGATACCTCATCCGAGAGAT+GGG | 0.486016 | 1.3:+74796143 | None:intergenic |
| TCACGCACCCTAGGAATGTT+GGG | 0.486164 | 1.3:-74798093 | None:intergenic |
| GTCGGTTGTAAGAGAGAAAT+CGG | 0.487398 | 1.3:-74797935 | MS.gene71785:CDS |
| ATAATCCACCGCAAGCTCGC+AGG | 0.487516 | 1.3:-74798026 | MS.gene71785:CDS |
| TGATTTGTGGGAATCGTTCA+GGG | 0.494784 | 1.3:-74796666 | MS.gene71785:CDS |
| CCTTGACTTTACAGGTGGCT+TGG | 0.496240 | 1.3:+74796535 | None:intergenic |
| GCCAAAGGTTCGCGGCCGTA+AGG | 0.501819 | 1.3:+74795994 | None:intergenic |
| ATTTGAATTCCAGAAAGATA+AGG | 0.506956 | 1.3:+74796572 | None:intergenic |
| TTGTTATTCCGTAGGCAACT+AGG | 0.508302 | 1.3:-74796258 | MS.gene71785:intron |
| GGACAGTGACAGTGATTTCA+GGG | 0.510639 | 1.3:-74796232 | MS.gene71785:CDS |
| GAGATACCTCATCCGAGAGA+TGG | 0.515241 | 1.3:+74796142 | None:intergenic |
| AGCAGTAACAGAAGGTGTAA+TGG | 0.527045 | 1.3:+74797789 | None:intergenic |
| AAATCACCAAGAACAAAGTA+AGG | 0.533260 | 1.3:+74796683 | None:intergenic |
| GGATGAGGTATCTCATTGGA+TGG | 0.538789 | 1.3:-74796133 | MS.gene71785:CDS |
| TGGTCTCTTCAGACCCAACC+CGG | 0.540662 | 1.3:+74797884 | None:intergenic |
| TCTCGGATGAGGTATCTCAT+TGG | 0.541038 | 1.3:-74796137 | MS.gene71785:CDS |
| AAAGGTTCGCGGCCGTAAGG+AGG | 0.541630 | 1.3:+74795997 | None:intergenic |
| ACTAGAAAAGCCGTCTTGCA+GGG | 0.542317 | 1.3:+74796080 | None:intergenic |
| TCTTTGTCATTTAATACAAG+CGG | 0.544409 | 1.3:+74796617 | None:intergenic |
| AACGCCCTGCGAGCTTGCGG+TGG | 0.546385 | 1.3:+74798021 | None:intergenic |
| TGCTATTTGAGTATCTTGAA+CGG | 0.549828 | 1.3:-74796023 | MS.gene71785:CDS |
| CTTGAACGGGACCCTCCTTA+CGG | 0.551076 | 1.3:-74796009 | MS.gene71785:CDS |
| TAATCCACCGCAAGCTCGCA+GGG | 0.557011 | 1.3:-74798025 | MS.gene71785:CDS |
| AAGGAATCTTCCCCATCTCT+CGG | 0.562288 | 1.3:-74796154 | MS.gene71785:CDS |
| CCTTATCAGCCAAAGGTTCG+CGG | 0.566939 | 1.3:+74795986 | None:intergenic |
| AAGAAATTAGAGAACCGGGT+TGG | 0.568604 | 1.3:-74797898 | MS.gene71785:CDS |
| GGTGAATCTGTCAATTCTCA+AGG | 0.569199 | 1.3:-74796051 | MS.gene71785:CDS |
| TTCAGGGACTCAAGTAGTGA+TGG | 0.574397 | 1.3:-74796216 | MS.gene71785:CDS |
| TCTTCCCCATCTCTCGGATG+AGG | 0.578703 | 1.3:-74796148 | MS.gene71785:CDS |
| AAGGTTCGCGGCCGTAAGGA+GGG | 0.584917 | 1.3:+74795998 | None:intergenic |
| CGTGTGAACCGGAGGTGAAG+CGG | 0.594227 | 1.3:-74797840 | MS.gene71785:CDS |
| AGATGCTGAGCAGTAACAGA+AGG | 0.595629 | 1.3:+74797781 | None:intergenic |
| TTCACCTCCGGTTCACACGA+CGG | 0.596200 | 1.3:+74797844 | None:intergenic |
| AGCGGTTGAGTAATTTGGAA+CGG | 0.600903 | 1.3:-74797822 | MS.gene71785:CDS |
| TGACAAGAAATTAGAGAACC+GGG | 0.607342 | 1.3:-74797902 | MS.gene71785:CDS |
| GTAAGCACCTTATCAGCCAA+AGG | 0.607487 | 1.3:+74795979 | None:intergenic |
| ATATACCTTGACTTTACAGG+TGG | 0.609905 | 1.3:+74796530 | None:intergenic |
| TGTAACGCCCTGCGAGCTTG+CGG | 0.613217 | 1.3:+74798018 | None:intergenic |
| CTAGAAAAGCCGTCTTGCAG+GGG | 0.618066 | 1.3:+74796081 | None:intergenic |
| CCAAGCCACCTGTAAAGTCA+AGG | 0.619856 | 1.3:-74796535 | MS.gene71785:intron |
| ATTCCGTAGGCAACTAGGTG+AGG | 0.626220 | 1.3:-74796253 | MS.gene71785:intron |
| AGTTCCGTCGTGTGAACCGG+AGG | 0.627281 | 1.3:-74797848 | MS.gene71785:CDS |
| CAGCATACTCCCCTGCAAGA+CGG | 0.634001 | 1.3:-74796090 | MS.gene71785:CDS |
| TTAGAGGATATAGGGAACAA+AGG | 0.635146 | 1.3:-74796173 | MS.gene71785:CDS |
| GATGAGGTATCTCATTGGAT+GGG | 0.635835 | 1.3:-74796132 | MS.gene71785:CDS |
| ACAACCGACGACGACCGACT+CGG | 0.640777 | 1.3:+74797949 | None:intergenic |
| TACACCGAGTCGGTCGTCGT+CGG | 0.644869 | 1.3:-74797953 | MS.gene71785:CDS |
| GATACCTCATCCGAGAGATG+GGG | 0.675095 | 1.3:+74796144 | None:intergenic |
| AAGCTTCAGGACGTGCAATG+AGG | 0.676038 | 1.3:-74796714 | MS.gene71785:CDS |
| TCACCAAGAACAAAGTAAGG+CGG | 0.715744 | 1.3:+74796686 | None:intergenic |
| ACAGCGATGTTACACCGAGT+CGG | 0.720265 | 1.3:-74797963 | MS.gene71785:CDS |
| GGTTGTAAGAGAGAAATCGG+TGG | 0.738137 | 1.3:-74797932 | MS.gene71785:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTAAATGAATCTAAAACA+TGG | + | chr1.3:74796801-74796820 | None:intergenic | 15.0% |
| !!! | TTTAAAATGCAGAAAAAATA+CGG | + | chr1.3:74797094-74797113 | None:intergenic | 15.0% |
| !! | AAACCAACAAACATAAAAAA+CGG | + | chr1.3:74796376-74796395 | None:intergenic | 20.0% |
| !! | CATTTAATAAATGATGTATG+TGG | - | chr1.3:74796812-74796831 | MS.gene71785:intron | 20.0% |
| !! | CTGAATGTAATCAAATAATA+GGG | - | chr1.3:74797619-74797638 | MS.gene71785:intron | 20.0% |
| !! | TCTGAATGTAATCAAATAAT+AGG | - | chr1.3:74797618-74797637 | MS.gene71785:intron | 20.0% |
| !!! | AATATTAAAGATTTGCTTCT+AGG | + | chr1.3:74797190-74797209 | None:intergenic | 20.0% |
| !!! | ATATTAAAGATTTGCTTCTA+GGG | + | chr1.3:74797189-74797208 | None:intergenic | 20.0% |
| !!! | ATTATATTTTGTTATTCCGT+AGG | - | chr1.3:74797789-74797808 | MS.gene71785:CDS | 20.0% |
| !!! | TTAATCTTTTTTATTGCGAT+TGG | - | chr1.3:74797298-74797317 | MS.gene71785:intron | 20.0% |
| ! | ATTGAAAGATATATTTGCAG+TGG | - | chr1.3:74797565-74797584 | MS.gene71785:intron | 25.0% |
| ! | ATTTGAATTCCAGAAAGATA+AGG | + | chr1.3:74797486-74797505 | None:intergenic | 25.0% |
| ! | CAATGAAAGAAAAAACACAA+GGG | - | chr1.3:74796597-74796616 | MS.gene71785:CDS | 25.0% |
| ! | GCAAATATATCTTTCAATCA+GGG | + | chr1.3:74797563-74797582 | None:intergenic | 25.0% |
| ! | TCAATGAAAGAAAAAACACA+AGG | - | chr1.3:74796596-74796615 | MS.gene71785:CDS | 25.0% |
| ! | TGCAAATATATCTTTCAATC+AGG | + | chr1.3:74797564-74797583 | None:intergenic | 25.0% |
| ! | TTTCTTAAGAAACTGTGATT+AGG | - | chr1.3:74797234-74797253 | MS.gene71785:intron | 25.0% |
| !! | ACATTGCAAATTTTATTGCA+AGG | - | chr1.3:74797657-74797676 | MS.gene71785:intron | 25.0% |
| !! | GGTTTAGTTTATTTAGTTGT+TGG | - | chr1.3:74796391-74796410 | MS.gene71785:intron | 25.0% |
| !! | TCTTTGTCATTTAATACAAG+CGG | + | chr1.3:74797441-74797460 | None:intergenic | 25.0% |
| !! | TTGTGTTGTTACATTCATTT+CGG | + | chr1.3:74797013-74797032 | None:intergenic | 25.0% |
| !! | TTTTTGCTTATATTTGTGAC+CGG | + | chr1.3:74796777-74796796 | None:intergenic | 25.0% |
| !!! | AAACCGTTTTTTATGTTTGT+TGG | - | chr1.3:74796370-74796389 | MS.gene71785:intron | 25.0% |
| !!! | CATTCATTTCGGTTATTTTT+AGG | + | chr1.3:74797002-74797021 | None:intergenic | 25.0% |
| !!! | TCTGCATTTTAAAAAGCAAT+GGG | - | chr1.3:74797101-74797120 | MS.gene71785:intron | 25.0% |
| !!! | TTCTGCATTTTAAAAAGCAA+TGG | - | chr1.3:74797100-74797119 | MS.gene71785:intron | 25.0% |
| !!! | TTTTCTGTTTTGATTCATCT+TGG | - | chr1.3:74796684-74796703 | MS.gene71785:CDS | 25.0% |
| AAATCACCAAGAACAAAGTA+AGG | + | chr1.3:74797375-74797394 | None:intergenic | 30.0% | |
| ACTTCAATATATACACTCTC+CGG | + | chr1.3:74796908-74796927 | None:intergenic | 30.0% | |
| ATATCGTAGAAATAATGCAG+AGG | - | chr1.3:74796467-74796486 | MS.gene71785:intron | 30.0% | |
| CAAATATACCTTGACTTTAC+AGG | + | chr1.3:74797531-74797550 | None:intergenic | 30.0% | |
| CAGTGGTTATTCATTCTATA+GGG | - | chr1.3:74797582-74797601 | MS.gene71785:intron | 30.0% | |
| TTAGATGTTGATCTTTACTG+CGG | - | chr1.3:74797745-74797764 | MS.gene71785:intron | 30.0% | |
| TTGACAAGAAATTAGAGAAC+CGG | - | chr1.3:74796152-74796171 | MS.gene71785:CDS | 30.0% | |
| ! | ATCAAATAATAGGGCAGTTT+TGG | - | chr1.3:74797628-74797647 | MS.gene71785:intron | 30.0% |
| ! | CACACACTTAATATTTCTAC+CGG | + | chr1.3:74797140-74797159 | None:intergenic | 30.0% |
| ! | TCAAATAATAGGGCAGTTTT+GGG | - | chr1.3:74797629-74797648 | MS.gene71785:intron | 30.0% |
| ! | TGCTATTTGAGTATCTTGAA+CGG | - | chr1.3:74798032-74798051 | MS.gene71785:CDS | 30.0% |
| ! | TTTTTGCCTATATTTGTGAC+CGG | - | chr1.3:74796886-74796905 | MS.gene71785:intron | 30.0% |
| !! | CTGCATTTTAAAAAGCAATG+GGG | - | chr1.3:74797102-74797121 | MS.gene71785:intron | 30.0% |
| !!! | GCGCTAGTTGTTTTATTTAT+AGG | - | chr1.3:74796320-74796339 | MS.gene71785:intron | 30.0% |
| AAGAAAAAACACAAGGGCTT+TGG | - | chr1.3:74796603-74796622 | MS.gene71785:CDS | 35.0% | |
| AATGGGGAATTATCAAATGC+CGG | - | chr1.3:74797118-74797137 | MS.gene71785:intron | 35.0% | |
| ATATACCTTGACTTTACAGG+TGG | + | chr1.3:74797528-74797547 | None:intergenic | 35.0% | |
| CACATTACAACCATGAAAAC+TGG | + | chr1.3:74796664-74796683 | None:intergenic | 35.0% | |
| GATTAGGAAACTGAACTGTA+CGG | - | chr1.3:74797250-74797269 | MS.gene71785:intron | 35.0% | |
| GCAGTGGTTATTCATTCTAT+AGG | - | chr1.3:74797581-74797600 | MS.gene71785:intron | 35.0% | |
| GCTATTTGAGTATCTTGAAC+GGG | - | chr1.3:74798033-74798052 | MS.gene71785:CDS | 35.0% | |
| TACTACGTTCCTTATCTTTC+TGG | - | chr1.3:74797474-74797493 | MS.gene71785:intron | 35.0% | |
| TAGGGAATCACATTTCAACT+GGG | + | chr1.3:74797171-74797190 | None:intergenic | 35.0% | |
| TCATTCTATAGGGTGCAAAT+TGG | - | chr1.3:74797592-74797611 | MS.gene71785:intron | 35.0% | |
| TCATTGGATGGGTAGATTAT+CGG | - | chr1.3:74797934-74797953 | MS.gene71785:CDS | 35.0% | |
| TCTCGCTCATATGTAAAAAC+CGG | + | chr1.3:74796737-74796756 | None:intergenic | 35.0% | |
| TGAACCTGTTAGAGGATATA+GGG | - | chr1.3:74797874-74797893 | MS.gene71785:CDS | 35.0% | |
| TGACAAGAAATTAGAGAACC+GGG | - | chr1.3:74796153-74796172 | MS.gene71785:CDS | 35.0% | |
| TGATTCATCTTGGATTCAAG+CGG | - | chr1.3:74796694-74796713 | MS.gene71785:CDS | 35.0% | |
| TTAGAGGATATAGGGAACAA+AGG | - | chr1.3:74797882-74797901 | MS.gene71785:CDS | 35.0% | |
| ! | ACTTTGTTCTTGGTGATTTG+TGG | - | chr1.3:74797376-74797395 | MS.gene71785:intron | 35.0% |
| ! | CTTTGTTCTTGGTGATTTGT+GGG | - | chr1.3:74797377-74797396 | MS.gene71785:intron | 35.0% |
| !! | GAGTAATTTGGAACGGTTTT+TGG | - | chr1.3:74796240-74796259 | MS.gene71785:CDS | 35.0% |
| AAGAAATTAGAGAACCGGGT+TGG | - | chr1.3:74796157-74796176 | MS.gene71785:CDS | 40.0% | |
| AGAAATTAGAGAACCGGGTT+GGG | - | chr1.3:74796158-74796177 | MS.gene71785:CDS | 40.0% | |
| AGCGGTTGAGTAATTTGGAA+CGG | - | chr1.3:74796233-74796252 | MS.gene71785:CDS | 40.0% | |
| AGTGATTGTGAACCTGTTAG+AGG | - | chr1.3:74797866-74797885 | MS.gene71785:CDS | 40.0% | |
| ATTGCGATTGGATATTGCAG+AGG | - | chr1.3:74797310-74797329 | MS.gene71785:intron | 40.0% | |
| CTAGGGAATCACATTTCAAC+TGG | + | chr1.3:74797172-74797191 | None:intergenic | 40.0% | |
| GAAGCAAAACATGTAGCACA+TGG | - | chr1.3:74796492-74796511 | MS.gene71785:intron | 40.0% | |
| GGTGAATCTGTCAATTCTCA+AGG | - | chr1.3:74798004-74798023 | MS.gene71785:CDS | 40.0% | |
| GTCGGTTGTAAGAGAGAAAT+CGG | - | chr1.3:74796120-74796139 | MS.gene71785:CDS | 40.0% | |
| GTGAACCTGTTAGAGGATAT+AGG | - | chr1.3:74797873-74797892 | MS.gene71785:CDS | 40.0% | |
| TCACCAAGAACAAAGTAAGG+CGG | + | chr1.3:74797372-74797391 | None:intergenic | 40.0% | |
| TCGTAGAAATAATGCAGAGG+AGG | - | chr1.3:74796470-74796489 | MS.gene71785:intron | 40.0% | |
| TGCTTATATTTGTGACCGGA+GGG | + | chr1.3:74796773-74796792 | None:intergenic | 40.0% | |
| TGTTCCCTATATCCTCTAAC+AGG | + | chr1.3:74797881-74797900 | None:intergenic | 40.0% | |
| TTGCTTATATTTGTGACCGG+AGG | + | chr1.3:74796774-74796793 | None:intergenic | 40.0% | |
| ! | AAGAGAGAAATCGGTGGATT+CGG | - | chr1.3:74796129-74796148 | MS.gene71785:CDS | 40.0% |
| ! | ACTGCTATGAACTTTTCACG+AGG | - | chr1.3:74795986-74796005 | MS.gene71785:CDS | 40.0% |
| ! | AGCAGTAACAGAAGGTGTAA+TGG | + | chr1.3:74796269-74796288 | None:intergenic | 40.0% |
| ! | CAGAGTCAAACCAGTTTTCA+TGG | - | chr1.3:74796651-74796670 | MS.gene71785:CDS | 40.0% |
| ! | GAAATAGAAAGTACACCCTC+CGG | - | chr1.3:74796755-74796774 | MS.gene71785:intron | 40.0% |
| ! | GATGAGGTATCTCATTGGAT+GGG | - | chr1.3:74797923-74797942 | MS.gene71785:CDS | 40.0% |
| ! | TGATTTGTGGGAATCGTTCA+GGG | - | chr1.3:74797389-74797408 | MS.gene71785:intron | 40.0% |
| ! | TTAAGTTCAGCGTTTTGCTC+AGG | - | chr1.3:74796545-74796564 | MS.gene71785:CDS | 40.0% |
| ! | TTGTTATTCCGTAGGCAACT+AGG | - | chr1.3:74797797-74797816 | MS.gene71785:CDS | 40.0% |
| AAGGAATCTTCCCCATCTCT+CGG | - | chr1.3:74797901-74797920 | MS.gene71785:CDS | 45.0% | |
| ACTAGAAAAGCCGTCTTGCA+GGG | + | chr1.3:74797978-74797997 | None:intergenic | 45.0% | |
| AGATACCTCATCCGAGAGAT+GGG | + | chr1.3:74797915-74797934 | None:intergenic | 45.0% | |
| AGATGCTGAGCAGTAACAGA+AGG | + | chr1.3:74796277-74796296 | None:intergenic | 45.0% | |
| AGGACAGTGACAGTGATTTC+AGG | - | chr1.3:74797822-74797841 | MS.gene71785:CDS | 45.0% | |
| CACTCTCCGGTCACAAATAT+AGG | + | chr1.3:74796895-74796914 | None:intergenic | 45.0% | |
| CGGAACTGCAACTACTTTCT+TGG | + | chr1.3:74796194-74796213 | None:intergenic | 45.0% | |
| GGACAGTGACAGTGATTTCA+GGG | - | chr1.3:74797823-74797842 | MS.gene71785:CDS | 45.0% | |
| GGTGAAGCGGTTGAGTAATT+TGG | - | chr1.3:74796228-74796247 | MS.gene71785:CDS | 45.0% | |
| GGTTGTAAGAGAGAAATCGG+TGG | - | chr1.3:74796123-74796142 | MS.gene71785:CDS | 45.0% | |
| GTAAGCACCTTATCAGCCAA+AGG | + | chr1.3:74798079-74798098 | None:intergenic | 45.0% | |
| GTTCCGCCTTACTTTGTTCT+TGG | - | chr1.3:74797366-74797385 | MS.gene71785:intron | 45.0% | |
| TACTGCTCAGCATCTCTCTA+AGG | - | chr1.3:74796282-74796301 | MS.gene71785:intron | 45.0% | |
| TTCAGGGACTCAAGTAGTGA+TGG | - | chr1.3:74797839-74797858 | MS.gene71785:CDS | 45.0% | |
| TTCATCTTGGATTCAAGCGG+CGG | - | chr1.3:74796697-74796716 | MS.gene71785:CDS | 45.0% | |
| ! | AGCGTTTTGCTCAGGTGTAA+TGG | - | chr1.3:74796553-74796572 | MS.gene71785:CDS | 45.0% |
| ! | ATGAACTTTTCACGAGGTCG+TGG | - | chr1.3:74795992-74796011 | MS.gene71785:CDS | 45.0% |
| ! | GCGTTTTGCTCAGGTGTAAT+GGG | - | chr1.3:74796554-74796573 | MS.gene71785:CDS | 45.0% |
| ! | GGATGAGGTATCTCATTGGA+TGG | - | chr1.3:74797922-74797941 | MS.gene71785:CDS | 45.0% |
| ! | GTGATTTGTGGGAATCGTTC+AGG | - | chr1.3:74797388-74797407 | MS.gene71785:intron | 45.0% |
| ! | TCTCGGATGAGGTATCTCAT+TGG | - | chr1.3:74797918-74797937 | MS.gene71785:CDS | 45.0% |
| ! | TTCAGGGAATGGAGTGCTTA+CGG | - | chr1.3:74797405-74797424 | MS.gene71785:intron | 45.0% |
| !! | GACGGCTTTTCTAGTGATGA+TGG | - | chr1.3:74797983-74798002 | MS.gene71785:CDS | 45.0% |
| AAGCTTCAGGACGTGCAATG+AGG | - | chr1.3:74797341-74797360 | MS.gene71785:intron | 50.0% | |
| ACAGCGATGTTACACCGAGT+CGG | - | chr1.3:74796092-74796111 | MS.gene71785:CDS | 50.0% | |
| AGAGGTCTGCAAGAAGCTTC+AGG | - | chr1.3:74797328-74797347 | MS.gene71785:intron | 50.0% | |
| ATTCCGTAGGCAACTAGGTG+AGG | - | chr1.3:74797802-74797821 | MS.gene71785:CDS | 50.0% | |
| CACTAGAAAAGCCGTCTTGC+AGG | + | chr1.3:74797979-74797998 | None:intergenic | 50.0% | |
| CCAAGCCACCTGTAAAGTCA+AGG | - | chr1.3:74797520-74797539 | MS.gene71785:intron | 50.0% | |
| CCTTATCAGCCAAAGGTTCG+CGG | + | chr1.3:74798072-74798091 | None:intergenic | 50.0% | |
| CCTTGACTTTACAGGTGGCT+TGG | + | chr1.3:74797523-74797542 | None:intergenic | 50.0% | |
| CTAGAAAAGCCGTCTTGCAG+GGG | + | chr1.3:74797977-74797996 | None:intergenic | 50.0% | |
| GAGATACCTCATCCGAGAGA+TGG | + | chr1.3:74797916-74797935 | None:intergenic | 50.0% | |
| GATACCTCATCCGAGAGATG+GGG | + | chr1.3:74797914-74797933 | None:intergenic | 50.0% | |
| TGTCCTCACCTAGTTGCCTA+CGG | + | chr1.3:74797808-74797827 | None:intergenic | 50.0% | |
| TGTGGGAATCGTTCAGGGAA+TGG | - | chr1.3:74797394-74797413 | MS.gene71785:intron | 50.0% | |
| TTACTCAACCGCTTCACCTC+CGG | + | chr1.3:74796226-74796245 | None:intergenic | 50.0% | |
| !! | AAGGGCTTTGGATCACTAGC+TGG | - | chr1.3:74796615-74796634 | MS.gene71785:CDS | 50.0% |
| ATAATCCACCGCAAGCTCGC+AGG | - | chr1.3:74796029-74796048 | MS.gene71785:CDS | 55.0% | |
| CAGCATACTCCCCTGCAAGA+CGG | - | chr1.3:74797965-74797984 | MS.gene71785:CDS | 55.0% | |
| CCGCGAACCTTTGGCTGATA+AGG | - | chr1.3:74798069-74798088 | MS.gene71785:CDS | 55.0% | |
| CTTGAACGGGACCCTCCTTA+CGG | - | chr1.3:74798046-74798065 | MS.gene71785:CDS | 55.0% | |
| TAATCCACCGCAAGCTCGCA+GGG | - | chr1.3:74796030-74796049 | MS.gene71785:CDS | 55.0% | |
| TCTTCCCCATCTCTCGGATG+AGG | - | chr1.3:74797907-74797926 | MS.gene71785:CDS | 55.0% | |
| TGCAGTTCCGTCGTGTGAAC+CGG | - | chr1.3:74796204-74796223 | MS.gene71785:CDS | 55.0% | |
| TGGTCTCTTCAGACCCAACC+CGG | + | chr1.3:74796174-74796193 | None:intergenic | 55.0% | |
| TTCACCTCCGGTTCACACGA+CGG | + | chr1.3:74796214-74796233 | None:intergenic | 55.0% | |
| ! | CTTTTCACGAGGTCGTGGTG+AGG | - | chr1.3:74795997-74796016 | MS.gene71785:CDS | 55.0% |
| ! | GAATGGAGTGCTTACGGAGC+TGG | - | chr1.3:74797411-74797430 | MS.gene71785:intron | 55.0% |
| ! | TTACAGGTGGCTTGGCAGAC+TGG | + | chr1.3:74797515-74797534 | None:intergenic | 55.0% |
| AAAGGTTCGCGGCCGTAAGG+AGG | + | chr1.3:74798061-74798080 | None:intergenic | 60.0% | |
| AAGGTTCGCGGCCGTAAGGA+GGG | + | chr1.3:74798060-74798079 | None:intergenic | 60.0% | |
| ACAACCGACGACGACCGACT+CGG | + | chr1.3:74796109-74796128 | None:intergenic | 60.0% | |
| AGTTCCGTCGTGTGAACCGG+AGG | - | chr1.3:74796207-74796226 | MS.gene71785:CDS | 60.0% | |
| CACGAGGTCGTGGTGAGGAT+CGG | - | chr1.3:74796002-74796021 | MS.gene71785:CDS | 60.0% | |
| CGTGTGAACCGGAGGTGAAG+CGG | - | chr1.3:74796215-74796234 | MS.gene71785:CDS | 60.0% | |
| TACACCGAGTCGGTCGTCGT+CGG | - | chr1.3:74796102-74796121 | MS.gene71785:CDS | 60.0% | |
| TCCTTACGGCCGCGAACCTT+TGG | - | chr1.3:74798060-74798079 | MS.gene71785:CDS | 60.0% | |
| TCTTGGATTCAAGCGGCGGC+TGG | - | chr1.3:74796701-74796720 | MS.gene71785:CDS | 60.0% | |
| TGTAACGCCCTGCGAGCTTG+CGG | + | chr1.3:74796040-74796059 | None:intergenic | 60.0% | |
| GCCAAAGGTTCGCGGCCGTA+AGG | + | chr1.3:74798064-74798083 | None:intergenic | 65.0% | |
| ! | GGCGGCTGGTCAACGCAAAC+CGG | - | chr1.3:74796715-74796734 | MS.gene71785:CDS | 65.0% |
| AACGCCCTGCGAGCTTGCGG+TGG | + | chr1.3:74796037-74796056 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 74795975 | 74798102 | 74795975 | ID=MS.gene71785 |
| chr1.3 | mRNA | 74795975 | 74798102 | 74795975 | ID=MS.gene71785.t1;Parent=MS.gene71785 |
| chr1.3 | exon | 74797774 | 74798102 | 74797774 | ID=MS.gene71785.t1.exon1;Parent=MS.gene71785.t1 |
| chr1.3 | CDS | 74797774 | 74798102 | 74797774 | ID=cds.MS.gene71785.t1;Parent=MS.gene71785.t1 |
| chr1.3 | exon | 74796536 | 74796747 | 74796536 | ID=MS.gene71785.t1.exon2;Parent=MS.gene71785.t1 |
| chr1.3 | CDS | 74796536 | 74796747 | 74796536 | ID=cds.MS.gene71785.t1;Parent=MS.gene71785.t1 |
| chr1.3 | exon | 74795975 | 74796266 | 74795975 | ID=MS.gene71785.t1.exon3;Parent=MS.gene71785.t1 |
| chr1.3 | CDS | 74795975 | 74796266 | 74795975 | ID=cds.MS.gene71785.t1;Parent=MS.gene71785.t1 |
| Gene Sequence |
| Protein sequence |
