AlfalfaGEDB | MS.gene71937

M. sativa cultivar XinJiangDaYe / MS.gene71937

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71937.t1	XP_003608724.1	92.1	757	56	2	1	756	1	754	0.00E+00	1377.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71937.t1	G7JIX8	92.1	757	56	2	1	756	1	754	0.0e+00	1377.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050605	MS.gene71937	0.814704	1.35E-51	-1.69E-46
MS.gene050680	MS.gene71937	0.804027	2.63E-49	-1.69E-46
MS.gene051368	MS.gene71937	0.824502	7.80E-54	-1.69E-46
MS.gene052333	MS.gene71937	0.839555	1.48E-57	-1.69E-46
MS.gene052674	MS.gene71937	0.802434	5.62E-49	-1.69E-46
MS.gene052675	MS.gene71937	0.80979	1.59E-50	-1.69E-46
MS.gene052677	MS.gene71937	0.811759	5.96E-51	-1.69E-46
MS.gene053166	MS.gene71937	0.839656	1.39E-57	-1.69E-46
MS.gene05415	MS.gene71937	0.804469	2.13E-49	-1.69E-46
MS.gene054479	MS.gene71937	0.812035	5.19E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene71937.t1	MTR_4g101050	93.131	757	48	2	1	756	1	754	1409
MS.gene71937.t1	MTR_4g101070	83.377	758	122	2	1	756	3	758	1287
MS.gene71937.t1	MTR_4g101070	85.110	591	84	2	1	589	3	591	1025

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene71937.t1	AT4G17250	47.067	733	374	8	6	731	3	728	678
MS.gene71937.t1	AT5G47580	47.862	725	364	6	6	723	6	723	656
MS.gene71937.t1	AT4G17250	49.601	627	307	6	6	628	3	624	624
MS.gene71937.t1	AT4G17250	44.811	636	337	8	103	731	1	629	542

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Find 123 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAACAAGAGTTTGATA+AGG	0.479736	8.3:+20089733	MS.gene71937:CDS
AAAACTTGTTATTGAGTTAT+TGG	0.151568	8.3:+20090489	MS.gene71937:CDS
AAAATAACATTGACAAAGAT+GGG	0.438230	8.3:+20090728	MS.gene71937:CDS
AAAGAGAGCATTTCCTAGAG+TGG	0.537845	8.3:+20091236	MS.gene71937:CDS
AAAGTCTCTCACTAGTGATA+TGG	0.398070	8.3:-20091044	None:intergenic
AAATAACATTGACAAAGATG+GGG	0.675781	8.3:+20090729	MS.gene71937:CDS
AAGAATATGTGCAACAGTGA+AGG	0.562876	8.3:+20089143	MS.gene71937:CDS
AAGTAGCTGCTGTTGGTGTT+GGG	0.416316	8.3:+20089990	MS.gene71937:CDS
AATAACTCAATAACAAGTTT+TGG	0.300017	8.3:-20090487	None:intergenic
AATCCCAAGATCCAACACAT+AGG	0.577754	8.3:-20090283	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATCTTCAATATTAGTCCCA+CGG	-	chr8.3:20091269-20091288	None:intergenic	30.0%
ACCAAACACTTCTCAATATT+TGG	-	chr8.3:20090655-20090674	None:intergenic	30.0%
AGTTTGATAAGGTTACTGAT+AGG	+	chr8.3:20089744-20089763	MS.gene71937:CDS	30.0%
ATCTTGATTCAACAGAAGAA+TGG	-	chr8.3:20091013-20091032	None:intergenic	30.0%
CACGTAACAGATATAACATA+AGG	-	chr8.3:20091126-20091145	None:intergenic	30.0%
GGTGATAATTGCTGATATAT+TGG	+	chr8.3:20091080-20091099	MS.gene71937:CDS	30.0%
TATTAAACTACAGATAGGGA+TGG	+	chr8.3:20090222-20090241	MS.gene71937:CDS	30.0%
TTATGGATCCGAAAACTAAT+CGG	-	chr8.3:20090148-20090167	None:intergenic	30.0%
TTGAATCAAGATGTCATAAC+AGG	+	chr8.3:20091021-20091040	MS.gene71937:CDS	30.0%
TTTCAATTTACCCTATGTGT+TGG	+	chr8.3:20090272-20090291	MS.gene71937:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	20089137	20091407	20089137	ID=MS.gene71937
chr8.3	mRNA	20089137	20091407	20089137	ID=MS.gene71937.t1;Parent=MS.gene71937
chr8.3	exon	20089137	20091407	20089137	ID=MS.gene71937.t1.exon1;Parent=MS.gene71937.t1
chr8.3	CDS	20089137	20091407	20089137	ID=cds.MS.gene71937.t1;Parent=MS.gene71937.t1

Gene Sequence

>MS.gene71937

ATGGCAAAGAATATGTGCAACAGTGAAGGACACTTAGATGACACAAATTTCAGCAAACCAATGCCATGGATAGGAATCTACATAGCAACAGCATCACTTTTATGTCTCATTTCAATGTCTGCAGATCTCATCAAAGGCATCAAAACCCGCAAACTATGGTTCCCTTGCAAATACTTTTGTCTCAACGCGACTTCCTTGACCATAATCGCTGTTTCCGTCAAACTCTCCGTTGATCTCAACACTCCTATGCCTCACCGGCATGATCAGCTAGCAAAGCTAGCTAGCAGTGCCATGATTTGCACTATCATGGCTAATTCTATGCCTTCTCTTGGTGTAACGCAGAACAATGAAACCATGATGAATGTTTTGGCTATGGCTATTTTAGTGATTACTATGATTGTTAATATTTGTATACAGTTTGTAACTGGTGTTATCTATGAGTTTTGGATTGAACATGGTGTTATTATGTTTGTTATGGTTGTTTTGTTGATGATCATAACTTCTTCTACTTTGTGTTTACGAAAGATTAAACATTACATGGAGTTGAAGTATAAGATCAATGAAGAAGCTTTGCGAGAAGAATCAAACTCAAAGGAAAAACAACAAGAGTTTGATAAGGTTACTGATAGGCTAAGAGATGAATTGATGAAATTTTGGATGATGGCTCATACAAGCAGTCCTCAATTTATACTTGGAAGGTCAGTTTCATGTACTGCTTCTGGTGCTTTTTGTATTTTGAGTACTTTGACGTTAATAGAAGCGATGCTTCGATCTTATTTGATGTCTTGGTCGGTTAAATTCTGCACTGGTGAATGTGATTACAAATGGTCTACAATCTTGATTCTTATAGTTCAAGTAGCTGCTGTTGGTGTTGGGACTATTGCTCCTGCTTTGAGATGGTTTGTTGCTGTTAGATATAGGTGTCCAAATGTGAGGAAAAGGAGCTGCAAGAAAATTTTTCAAGTGGAAGGGTATTGGACTGATAGGCTAGTGGTGATTCGAGAAAGTCCGATTAGTTTTCGGATCCATAATCGGTGGTTTAGGAAGTTGGCTCATGATGTCAAACAGATGCTGTTGTGTTTGTGTATTAAACTACAGATAGGGATGGTTATATTGTGTAAAGCTGTACAATATGTTTCAATTTACCCTATGTGTTGGATCTTGGGATTTTGTGAGTTTTGTAGGACTTGGAAACTCGGTTCTAGCGTTTCGAGTTTAGGATCAGGCACAAAGCAGGATCTACGACGGTTTATTCTGCATCTCGAAGGAGAGGAAGAGTTGGTTGAGGTGATGATGAAAGACAATTGGGATGCAACTATTCATTGGGTTCAACAAGGTGAAAAAAAGCAACCAAAACTTGTTATTGAGTTATTGGAGAAAAAATGTTCAATCTTGCAAGGATTCAAAGGAGTTGGAGAATTTGATTGTGACCGAATTCTTCCTTTGCATGGTGTAGAACCTCCATATAATTGGTCACTCCCCATTGTGACACTAGCAAGCATTATAGTTGCGCTTCCAAATATTGAGAAGTGTTTGGTGAAAAAATTGATTAGTACTCTAAATGAAGCACTACCTTATGTGAAGTTCATAGAAAATAACATTGACAAAGATGGGGAATTCATTAAAGCTCGGAAAACAGCGGAAATTGTGTGGCTTGGAACTGATCTCTATAGAAAGTGGCTAGATGTTGATCTTTATAAACTCTCTCTTCAAAACAAGAGCATCAAAGAGACACTTGAAACCCTAGCTGAGTTTGCAAAAACAAGGTATGAGAAATATAAAGCAAAATATCATCACATATGTATTAAAGTAAGTCCTTCAGCATGGCCTATAAAAGTATTGGCTTCAAATGCAATGTATAGAATAAGCAAAGCCATTCTTCTGTTGAATCAAGATGTCATAACAGGCCATATCACTAGTGAGAGACTTTTTGAAGCAGTAACGGTGATAATTGCTGATATATTGGGTGCATGTTTAACTAACTTACCTTATGTTATATCTGTTACGTGTTTGAATACTGGCATTGAAGACAGAGAGAACAGTGTTAGACAAGCAGTTTATGTTCTTGGTAAGACAAAGAAGATTGTAGAAATGCTTGAAAAGAGAGCATTTCCTAGAGTGGATTTCTGCCGTGGGACTAATATTGAAGATTGGCGTTTAATGCTTAAGCAGAAGAGGTTCTGTTGTCCCTCTGTACTATCTTCACTGGAGGAGACTGATACCTGCACAAATTCTACTAAATTAAGGGATCTTTGCCTAAATATTGACTAA

Protein sequence

>MS.gene71937.t1

MAKNMCNSEGHLDDTNFSKPMPWIGIYIATASLLCLISMSADLIKGIKTRKLWFPCKYFCLNATSLTIIAVSVKLSVDLNTPMPHRHDQLAKLASSAMICTIMANSMPSLGVTQNNETMMNVLAMAILVITMIVNICIQFVTGVIYEFWIEHGVIMFVMVVLLMIITSSTLCLRKIKHYMELKYKINEEALREESNSKEKQQEFDKVTDRLRDELMKFWMMAHTSSPQFILGRSVSCTASGAFCILSTLTLIEAMLRSYLMSWSVKFCTGECDYKWSTILILIVQVAAVGVGTIAPALRWFVAVRYRCPNVRKRSCKKIFQVEGYWTDRLVVIRESPISFRIHNRWFRKLAHDVKQMLLCLCIKLQIGMVILCKAVQYVSIYPMCWILGFCEFCRTWKLGSSVSSLGSGTKQDLRRFILHLEGEEELVEVMMKDNWDATIHWVQQGEKKQPKLVIELLEKKCSILQGFKGVGEFDCDRILPLHGVEPPYNWSLPIVTLASIIVALPNIEKCLVKKLISTLNEALPYVKFIENNIDKDGEFIKARKTAEIVWLGTDLYRKWLDVDLYKLSLQNKSIKETLETLAEFAKTRYEKYKAKYHHICIKVSPSAWPIKVLASNAMYRISKAILLLNQDVITGHITSERLFEAVTVIIADILGACLTNLPYVISVTCLNTGIEDRENSVRQAVYVLGKTKKIVEMLEKRAFPRVDFCRGTNIEDWRLMLKQKRFCCPSVLSSLEETDTCTNSTKLRDLCLNID