Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71937.t1 | XP_003608724.1 | 92.1 | 757 | 56 | 2 | 1 | 756 | 1 | 754 | 0.00E+00 | 1377.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71937.t1 | G7JIX8 | 92.1 | 757 | 56 | 2 | 1 | 756 | 1 | 754 | 0.0e+00 | 1377.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050605 | MS.gene71937 | 0.814704 | 1.35E-51 | -1.69E-46 |
| MS.gene050680 | MS.gene71937 | 0.804027 | 2.63E-49 | -1.69E-46 |
| MS.gene051368 | MS.gene71937 | 0.824502 | 7.80E-54 | -1.69E-46 |
| MS.gene052333 | MS.gene71937 | 0.839555 | 1.48E-57 | -1.69E-46 |
| MS.gene052674 | MS.gene71937 | 0.802434 | 5.62E-49 | -1.69E-46 |
| MS.gene052675 | MS.gene71937 | 0.80979 | 1.59E-50 | -1.69E-46 |
| MS.gene052677 | MS.gene71937 | 0.811759 | 5.96E-51 | -1.69E-46 |
| MS.gene053166 | MS.gene71937 | 0.839656 | 1.39E-57 | -1.69E-46 |
| MS.gene05415 | MS.gene71937 | 0.804469 | 2.13E-49 | -1.69E-46 |
| MS.gene054479 | MS.gene71937 | 0.812035 | 5.19E-51 | -1.69E-46 |
| MS.gene054559 | MS.gene71937 | 0.828673 | 7.89E-55 | -1.69E-46 |
| MS.gene054994 | MS.gene71937 | 0.80199 | 6.94E-49 | -1.69E-46 |
| MS.gene05510 | MS.gene71937 | 0.811443 | 6.98E-51 | -1.69E-46 |
| MS.gene055230 | MS.gene71937 | 0.805514 | 1.29E-49 | -1.69E-46 |
| MS.gene055356 | MS.gene71937 | 0.801864 | 7.36E-49 | -1.69E-46 |
| MS.gene055701 | MS.gene71937 | 0.848048 | 7.86E-60 | -1.69E-46 |
| MS.gene057156 | MS.gene71937 | -0.830804 | 2.39E-55 | -1.69E-46 |
| MS.gene057208 | MS.gene71937 | 0.815515 | 8.89E-52 | -1.69E-46 |
| MS.gene058979 | MS.gene71937 | 0.815876 | 7.38E-52 | -1.69E-46 |
| MS.gene059161 | MS.gene71937 | 0.816294 | 5.96E-52 | -1.69E-46 |
| MS.gene060322 | MS.gene71937 | 0.805063 | 1.60E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71937.t1 | MTR_4g101050 | 93.131 | 757 | 48 | 2 | 1 | 756 | 1 | 754 | 0.0 | 1409 |
| MS.gene71937.t1 | MTR_4g101070 | 83.377 | 758 | 122 | 2 | 1 | 756 | 3 | 758 | 0.0 | 1287 |
| MS.gene71937.t1 | MTR_4g101070 | 85.110 | 591 | 84 | 2 | 1 | 589 | 3 | 591 | 0.0 | 1025 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71937.t1 | AT4G17250 | 47.067 | 733 | 374 | 8 | 6 | 731 | 3 | 728 | 0.0 | 678 |
| MS.gene71937.t1 | AT5G47580 | 47.862 | 725 | 364 | 6 | 6 | 723 | 6 | 723 | 0.0 | 656 |
| MS.gene71937.t1 | AT4G17250 | 49.601 | 627 | 307 | 6 | 6 | 628 | 3 | 624 | 0.0 | 624 |
| MS.gene71937.t1 | AT4G17250 | 44.811 | 636 | 337 | 8 | 103 | 731 | 1 | 629 | 0.0 | 542 |
Find 123 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCAAACACTTCTCAATATT+TGG | 0.113246 | 8.3:-20090652 | None:intergenic |
| AAAACTTGTTATTGAGTTAT+TGG | 0.151568 | 8.3:+20090489 | MS.gene71937:CDS |
| GCACAAATTCTACTAAATTA+AGG | 0.193234 | 8.3:+20091361 | MS.gene71937:CDS |
| AGACAAGCAGTTTATGTTCT+TGG | 0.232324 | 8.3:+20091183 | MS.gene71937:CDS |
| GAGATGAATTGATGAAATTT+TGG | 0.235831 | 8.3:+20089771 | MS.gene71937:CDS |
| ACTTCCTAAACCACCGATTA+TGG | 0.236006 | 8.3:-20090162 | None:intergenic |
| GGTTCTAGCGTTTCGAGTTT+AGG | 0.274993 | 8.3:+20090334 | MS.gene71937:CDS |
| TTTGACGGAAACAGCGATTA+TGG | 0.290610 | 8.3:-20089336 | None:intergenic |
| AATAACTCAATAACAAGTTT+TGG | 0.300017 | 8.3:-20090487 | None:intergenic |
| TCAGTTTCATGTACTGCTTC+TGG | 0.302903 | 8.3:+20089836 | MS.gene71937:CDS |
| TACCCTATGTGTTGGATCTT+GGG | 0.320599 | 8.3:+20090280 | MS.gene71937:CDS |
| GGTGATAATTGCTGATATAT+TGG | 0.324339 | 8.3:+20091080 | MS.gene71937:CDS |
| TTACCCTATGTGTTGGATCT+TGG | 0.340486 | 8.3:+20090279 | MS.gene71937:CDS |
| CTGGTGTTATCTATGAGTTT+TGG | 0.346173 | 8.3:+20089561 | MS.gene71937:CDS |
| ATTTGTATACAGTTTGTAAC+TGG | 0.348616 | 8.3:+20089542 | MS.gene71937:CDS |
| TTCGATCTTATTTGATGTCT+TGG | 0.352328 | 8.3:+20089903 | MS.gene71937:CDS |
| GGATCCATAATCGGTGGTTT+AGG | 0.355959 | 8.3:+20090158 | MS.gene71937:CDS |
| CACAAATTCTACTAAATTAA+GGG | 0.366106 | 8.3:+20091362 | MS.gene71937:CDS |
| GTGTAGAACCTCCATATAAT+TGG | 0.370757 | 8.3:+20090587 | MS.gene71937:CDS |
| TGAAACCATGATGAATGTTT+TGG | 0.374188 | 8.3:+20089484 | MS.gene71937:CDS |
| GCATCAAAACCCGCAAACTA+TGG | 0.374364 | 8.3:+20089273 | MS.gene71937:CDS |
| TCCAAATATTGAGAAGTGTT+TGG | 0.384738 | 8.3:+20090651 | MS.gene71937:CDS |
| TGGTGTTATTATGTTTGTTA+TGG | 0.385001 | 8.3:+20089592 | MS.gene71937:CDS |
| GAAAATAACATTGACAAAGA+TGG | 0.388204 | 8.3:+20090727 | MS.gene71937:CDS |
| ATGGGGAGTGACCAATTATA+TGG | 0.392822 | 8.3:-20090598 | None:intergenic |
| TTGAATCAAGATGTCATAAC+AGG | 0.394357 | 8.3:+20091021 | MS.gene71937:CDS |
| AAAGTCTCTCACTAGTGATA+TGG | 0.398070 | 8.3:-20091044 | None:intergenic |
| AAGTAGCTGCTGTTGGTGTT+GGG | 0.416316 | 8.3:+20089990 | MS.gene71937:CDS |
| TTATGGATCCGAAAACTAAT+CGG | 0.416338 | 8.3:-20090145 | None:intergenic |
| ATTGGGATGCAACTATTCAT+TGG | 0.418222 | 8.3:+20090440 | MS.gene71937:CDS |
| TCTGTTACGTGTTTGAATAC+TGG | 0.424899 | 8.3:+20091135 | MS.gene71937:CDS |
| GCAAGGGAACCATAGTTTGC+GGG | 0.425897 | 8.3:-20089282 | None:intergenic |
| TTGGGATGCAACTATTCATT+GGG | 0.426148 | 8.3:+20090441 | MS.gene71937:CDS |
| GCTAATTCTATGCCTTCTCT+TGG | 0.426410 | 8.3:+20089446 | MS.gene71937:CDS |
| CAAGTAGCTGCTGTTGGTGT+TGG | 0.430580 | 8.3:+20089989 | MS.gene71937:CDS |
| GGTTTGTTGCTGTTAGATAT+AGG | 0.434375 | 8.3:+20090035 | MS.gene71937:CDS |
| AAAATAACATTGACAAAGAT+GGG | 0.438230 | 8.3:+20090728 | MS.gene71937:CDS |
| GGTGTCCAAATGTGAGGAAA+AGG | 0.448572 | 8.3:+20090056 | MS.gene71937:CDS |
| TGGAAGGGTATTGGACTGAT+AGG | 0.449136 | 8.3:+20090101 | MS.gene71937:CDS |
| TTGCAAGGATTCAAAGGAGT+TGG | 0.456334 | 8.3:+20090529 | MS.gene71937:CDS |
| GTGATAATTGCTGATATATT+GGG | 0.460994 | 8.3:+20091081 | MS.gene71937:CDS |
| AGCATGGCCTATAAAAGTAT+TGG | 0.464015 | 8.3:+20090957 | MS.gene71937:CDS |
| AGCAGTCCTCAATTTATACT+TGG | 0.465661 | 8.3:+20089809 | MS.gene71937:CDS |
| AGGTGATGATGAAAGACAAT+TGG | 0.467748 | 8.3:+20090422 | MS.gene71937:CDS |
| TAATCGGTGGTTTAGGAAGT+TGG | 0.470451 | 8.3:+20090165 | MS.gene71937:CDS |
| ATCTTATTTGATGTCTTGGT+CGG | 0.471584 | 8.3:+20089907 | MS.gene71937:CDS |
| ACGAAAGATTAAACATTACA+TGG | 0.473168 | 8.3:+20089655 | MS.gene71937:CDS |
| TTGTGTATTAAACTACAGAT+AGG | 0.474492 | 8.3:+20090217 | MS.gene71937:CDS |
| ATGCTTGCTAGTGTCACAAT+GGG | 0.474989 | 8.3:-20090616 | None:intergenic |
| CTATTGCTCCTGCTTTGAGA+TGG | 0.477023 | 8.3:+20090014 | MS.gene71937:CDS |
| TGCCATGATTTGCACTATCA+TGG | 0.477597 | 8.3:+20089424 | MS.gene71937:CDS |
| AAAACAACAAGAGTTTGATA+AGG | 0.479736 | 8.3:+20089733 | MS.gene71937:CDS |
| TAGATTCCTATCCATGGCAT+TGG | 0.480860 | 8.3:-20089194 | None:intergenic |
| CACCATGCAAAGGAAGAATT+CGG | 0.481803 | 8.3:-20090567 | None:intergenic |
| TTTCAATTTACCCTATGTGT+TGG | 0.483405 | 8.3:+20090272 | MS.gene71937:CDS |
| TCCCTCTGTACTATCTTCAC+TGG | 0.489314 | 8.3:+20091323 | MS.gene71937:CDS |
| ATCTTGATTCAACAGAAGAA+TGG | 0.490265 | 8.3:-20091010 | None:intergenic |
| CACGTAACAGATATAACATA+AGG | 0.492851 | 8.3:-20091123 | None:intergenic |
| TGCAAGGGAACCATAGTTTG+CGG | 0.495659 | 8.3:-20089283 | None:intergenic |
| ACAGCGGAAATTGTGTGGCT+TGG | 0.498066 | 8.3:+20090772 | MS.gene71937:CDS |
| AGCGTTTCGAGTTTAGGATC+AGG | 0.502068 | 8.3:+20090340 | MS.gene71937:CDS |
| ATAGTTCAAGTAGCTGCTGT+TGG | 0.504833 | 8.3:+20089983 | MS.gene71937:CDS |
| TGATCATGCCGGTGAGGCAT+AGG | 0.505034 | 8.3:-20089380 | None:intergenic |
| GTGGGACTAATATTGAAGAT+TGG | 0.516737 | 8.3:+20091268 | MS.gene71937:CDS |
| GGTGATGATGAAAGACAATT+GGG | 0.520329 | 8.3:+20090423 | MS.gene71937:CDS |
| AGTTTGATAAGGTTACTGAT+AGG | 0.520646 | 8.3:+20089744 | MS.gene71937:CDS |
| AGGAGAGGAAGAGTTGGTTG+AGG | 0.523488 | 8.3:+20090402 | MS.gene71937:CDS |
| TGTGTATTAAACTACAGATA+GGG | 0.533409 | 8.3:+20090218 | MS.gene71937:CDS |
| CATAGCCAAAACATTCATCA+TGG | 0.534666 | 8.3:-20089489 | None:intergenic |
| CCTAGAGTGGATTTCTGCCG+TGG | 0.535174 | 8.3:+20091249 | MS.gene71937:CDS |
| GTCCTCAATTTATACTTGGA+AGG | 0.536449 | 8.3:+20089813 | MS.gene71937:CDS |
| GAGATCAACGGAGAGTTTGA+CGG | 0.537395 | 8.3:-20089351 | None:intergenic |
| TTTAGGATCAGGCACAAAGC+AGG | 0.537499 | 8.3:+20090351 | MS.gene71937:CDS |
| AAAGAGAGCATTTCCTAGAG+TGG | 0.537845 | 8.3:+20091236 | MS.gene71937:CDS |
| TGGTCGGTTAAATTCTGCAC+TGG | 0.538042 | 8.3:+20089923 | MS.gene71937:CDS |
| TTGAGACAAAAGTATTTGCA+AGG | 0.538484 | 8.3:-20089299 | None:intergenic |
| TAATTTAGTAGAATTTGTGC+AGG | 0.538913 | 8.3:-20091358 | None:intergenic |
| TCAATCTTGCAAGGATTCAA+AGG | 0.541067 | 8.3:+20090523 | MS.gene71937:CDS |
| GACCGAATTCTTCCTTTGCA+TGG | 0.544863 | 8.3:+20090565 | MS.gene71937:CDS |
| CTGGTGAATGTGATTACAAA+TGG | 0.547354 | 8.3:+20089942 | MS.gene71937:CDS |
| GAACTGATCTCTATAGAAAG+TGG | 0.548534 | 8.3:+20090794 | MS.gene71937:CDS |
| AGCCATGATAGTGCAAATCA+TGG | 0.549705 | 8.3:-20089426 | None:intergenic |
| ATCCCAAGATCCAACACATA+GGG | 0.550450 | 8.3:-20090282 | None:intergenic |
| TCAACACTCCTATGCCTCAC+CGG | 0.551904 | 8.3:+20089372 | MS.gene71937:CDS |
| AAGAATATGTGCAACAGTGA+AGG | 0.562876 | 8.3:+20089143 | MS.gene71937:CDS |
| GACCTTCCAAGTATAAATTG+AGG | 0.576629 | 8.3:-20089815 | None:intergenic |
| ATTTCAGCAAACCAATGCCA+TGG | 0.577285 | 8.3:+20089183 | MS.gene71937:CDS |
| AATCCCAAGATCCAACACAT+AGG | 0.577754 | 8.3:-20090283 | None:intergenic |
| CGGTTTATTCTGCATCTCGA+AGG | 0.578932 | 8.3:+20090382 | MS.gene71937:CDS |
| ATGGGGAATTCATTAAAGCT+CGG | 0.585709 | 8.3:+20090746 | MS.gene71937:CDS |
| CCACGGCAGAAATCCACTCT+AGG | 0.586419 | 8.3:-20091249 | None:intergenic |
| GCTTTGCTAGCTGATCATGC+CGG | 0.587589 | 8.3:-20089391 | None:intergenic |
| AATGCTTGCTAGTGTCACAA+TGG | 0.588252 | 8.3:-20090617 | None:intergenic |
| GCTATGTAGATTCCTATCCA+TGG | 0.588339 | 8.3:-20089200 | None:intergenic |
| GCAACAAACCATCTCAAAGC+AGG | 0.589830 | 8.3:-20090022 | None:intergenic |
| GTTTAATGCTTAAGCAGAAG+AGG | 0.590609 | 8.3:+20091292 | MS.gene71937:CDS |
| CTAGAGTGGATTTCTGCCGT+GGG | 0.592323 | 8.3:+20091250 | MS.gene71937:CDS |
| GCGAGAAGAATCAAACTCAA+AGG | 0.592711 | 8.3:+20089709 | MS.gene71937:CDS |
| TCCAGTGAAGATAGTACAGA+GGG | 0.597861 | 8.3:-20091324 | None:intergenic |
| GGAAACAGCGATTATGGTCA+AGG | 0.602310 | 8.3:-20089330 | None:intergenic |
| TCTCGAAGGAGAGGAAGAGT+TGG | 0.603815 | 8.3:+20090396 | MS.gene71937:CDS |
| TTCTGCGTTACACCAAGAGA+AGG | 0.609942 | 8.3:-20089458 | None:intergenic |
| ATGTCTGCAGATCTCATCAA+AGG | 0.611092 | 8.3:+20089251 | MS.gene71937:CDS |
| AGCAAACCAATGCCATGGAT+AGG | 0.618922 | 8.3:+20089188 | MS.gene71937:CDS |
| AATCTTCAATATTAGTCCCA+CGG | 0.619042 | 8.3:-20091266 | None:intergenic |
| ACTATTCATTGGGTTCAACA+AGG | 0.621311 | 8.3:+20090451 | MS.gene71937:CDS |
| CTCTGTACTATCTTCACTGG+AGG | 0.621968 | 8.3:+20091326 | MS.gene71937:CDS |
| GGAAAACAGCGGAAATTGTG+TGG | 0.624134 | 8.3:+20090767 | MS.gene71937:CDS |
| TATTCTGCATCTCGAAGGAG+AGG | 0.624822 | 8.3:+20090387 | MS.gene71937:CDS |
| GATATAGGTGTCCAAATGTG+AGG | 0.626396 | 8.3:+20090050 | MS.gene71937:CDS |
| CATAGGAGTGTTGAGATCAA+CGG | 0.634065 | 8.3:-20089363 | None:intergenic |
| GGAGGTTCTACACCATGCAA+AGG | 0.640891 | 8.3:-20090577 | None:intergenic |
| GCTAGCTGATCATGCCGGTG+AGG | 0.641170 | 8.3:-20089386 | None:intergenic |
| TGAGACAAAAGTATTTGCAA+GGG | 0.647084 | 8.3:-20089298 | None:intergenic |
| GGGAGTGACCAATTATATGG+AGG | 0.669045 | 8.3:-20090595 | None:intergenic |
| TTAAAGTAAGTCCTTCAGCA+TGG | 0.672802 | 8.3:+20090941 | MS.gene71937:CDS |
| TATTAAACTACAGATAGGGA+TGG | 0.673003 | 8.3:+20090222 | MS.gene71937:CDS |
| AAATAACATTGACAAAGATG+GGG | 0.675781 | 8.3:+20090729 | MS.gene71937:CDS |
| CATTAAAGCTCGGAAAACAG+CGG | 0.676723 | 8.3:+20090756 | MS.gene71937:CDS |
| GTATTGGACTGATAGGCTAG+TGG | 0.680875 | 8.3:+20090108 | MS.gene71937:CDS |
| CTCCAGTGAAGATAGTACAG+AGG | 0.707560 | 8.3:-20091325 | None:intergenic |
| TGCTTGCTAGTGTCACAATG+GGG | 0.738579 | 8.3:-20090615 | None:intergenic |
| GCACAAAGCAGGATCTACGA+CGG | 0.742357 | 8.3:+20090362 | MS.gene71937:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAACATTGACAAAGAT+GGG | + | chr8.3:20090728-20090747 | MS.gene71937:CDS | 20.0% |
| !! | CACAAATTCTACTAAATTAA+GGG | + | chr8.3:20091362-20091381 | MS.gene71937:CDS | 20.0% |
| !!! | AAAACTTGTTATTGAGTTAT+TGG | + | chr8.3:20090489-20090508 | MS.gene71937:CDS | 20.0% |
| !!! | AATAACTCAATAACAAGTTT+TGG | - | chr8.3:20090490-20090509 | None:intergenic | 20.0% |
| ! | AAAAAATGTTCAATCTTGCA+AGG | + | chr8.3:20090514-20090533 | MS.gene71937:CDS | 25.0% |
| ! | AAAACAACAAGAGTTTGATA+AGG | + | chr8.3:20089733-20089752 | MS.gene71937:CDS | 25.0% |
| ! | AAATAACATTGACAAAGATG+GGG | + | chr8.3:20090729-20090748 | MS.gene71937:CDS | 25.0% |
| ! | ACGAAAGATTAAACATTACA+TGG | + | chr8.3:20089655-20089674 | MS.gene71937:CDS | 25.0% |
| ! | ATTTGTATACAGTTTGTAAC+TGG | + | chr8.3:20089542-20089561 | MS.gene71937:CDS | 25.0% |
| ! | GAAAATAACATTGACAAAGA+TGG | + | chr8.3:20090727-20090746 | MS.gene71937:CDS | 25.0% |
| ! | GCACAAATTCTACTAAATTA+AGG | + | chr8.3:20091361-20091380 | MS.gene71937:CDS | 25.0% |
| ! | GTGATAATTGCTGATATATT+GGG | + | chr8.3:20091081-20091100 | MS.gene71937:CDS | 25.0% |
| ! | TAATTTAGTAGAATTTGTGC+AGG | - | chr8.3:20091361-20091380 | None:intergenic | 25.0% |
| ! | TGTGTATTAAACTACAGATA+GGG | + | chr8.3:20090218-20090237 | MS.gene71937:CDS | 25.0% |
| ! | TTGTGTATTAAACTACAGAT+AGG | + | chr8.3:20090217-20090236 | MS.gene71937:CDS | 25.0% |
| !! | ATTGATGAAATTTTGGATGA+TGG | + | chr8.3:20089778-20089797 | MS.gene71937:CDS | 25.0% |
| !! | GAGATGAATTGATGAAATTT+TGG | + | chr8.3:20089771-20089790 | MS.gene71937:CDS | 25.0% |
| !! | TTTTCTATGAACTTCACATA+AGG | - | chr8.3:20090712-20090731 | None:intergenic | 25.0% |
| !!! | AAGAAAATTTTTCAAGTGGA+AGG | + | chr8.3:20090085-20090104 | MS.gene71937:CDS | 25.0% |
| !!! | AGAAAATTTTTCAAGTGGAA+GGG | + | chr8.3:20090086-20090105 | MS.gene71937:CDS | 25.0% |
| !!! | TGGTGTTATTATGTTTGTTA+TGG | + | chr8.3:20089592-20089611 | MS.gene71937:CDS | 25.0% |
| !!! | TTTGAAGCCAATACTTTTAT+AGG | - | chr8.3:20090967-20090986 | None:intergenic | 25.0% |
| AATCTTCAATATTAGTCCCA+CGG | - | chr8.3:20091269-20091288 | None:intergenic | 30.0% | |
| ACCAAACACTTCTCAATATT+TGG | - | chr8.3:20090655-20090674 | None:intergenic | 30.0% | |
| AGTTTGATAAGGTTACTGAT+AGG | + | chr8.3:20089744-20089763 | MS.gene71937:CDS | 30.0% | |
| ATCTTGATTCAACAGAAGAA+TGG | - | chr8.3:20091013-20091032 | None:intergenic | 30.0% | |
| CACGTAACAGATATAACATA+AGG | - | chr8.3:20091126-20091145 | None:intergenic | 30.0% | |
| GGTGATAATTGCTGATATAT+TGG | + | chr8.3:20091080-20091099 | MS.gene71937:CDS | 30.0% | |
| TATTAAACTACAGATAGGGA+TGG | + | chr8.3:20090222-20090241 | MS.gene71937:CDS | 30.0% | |
| TTATGGATCCGAAAACTAAT+CGG | - | chr8.3:20090148-20090167 | None:intergenic | 30.0% | |
| TTGAATCAAGATGTCATAAC+AGG | + | chr8.3:20091021-20091040 | MS.gene71937:CDS | 30.0% | |
| TTTCAATTTACCCTATGTGT+TGG | + | chr8.3:20090272-20090291 | MS.gene71937:CDS | 30.0% | |
| ! | ATCTTATTTGATGTCTTGGT+CGG | + | chr8.3:20089907-20089926 | MS.gene71937:CDS | 30.0% |
| ! | TGAAACCATGATGAATGTTT+TGG | + | chr8.3:20089484-20089503 | MS.gene71937:CDS | 30.0% |
| ! | TTCGATCTTATTTGATGTCT+TGG | + | chr8.3:20089903-20089922 | MS.gene71937:CDS | 30.0% |
| !! | TCCAAATATTGAGAAGTGTT+TGG | + | chr8.3:20090651-20090670 | MS.gene71937:CDS | 30.0% |
| !! | TGAGACAAAAGTATTTGCAA+GGG | - | chr8.3:20089301-20089320 | None:intergenic | 30.0% |
| !! | TTAGTTTTCGGATCCATAAT+CGG | + | chr8.3:20090149-20090168 | MS.gene71937:CDS | 30.0% |
| !! | TTGAGACAAAAGTATTTGCA+AGG | - | chr8.3:20089302-20089321 | None:intergenic | 30.0% |
| !!! | CTGCAAGAAAATTTTTCAAG+TGG | + | chr8.3:20090081-20090100 | MS.gene71937:CDS | 30.0% |
| !!! | TATGAGTTTTGGATTGAACA+TGG | + | chr8.3:20089572-20089591 | MS.gene71937:CDS | 30.0% |
| AAAGTCTCTCACTAGTGATA+TGG | - | chr8.3:20091047-20091066 | None:intergenic | 35.0% | |
| AAGAATATGTGCAACAGTGA+AGG | + | chr8.3:20089143-20089162 | MS.gene71937:CDS | 35.0% | |
| ACTATTCATTGGGTTCAACA+AGG | + | chr8.3:20090451-20090470 | MS.gene71937:CDS | 35.0% | |
| AGACAAGCAGTTTATGTTCT+TGG | + | chr8.3:20091183-20091202 | MS.gene71937:CDS | 35.0% | |
| AGCAGTCCTCAATTTATACT+TGG | + | chr8.3:20089809-20089828 | MS.gene71937:CDS | 35.0% | |
| ATGGGGAATTCATTAAAGCT+CGG | + | chr8.3:20090746-20090765 | MS.gene71937:CDS | 35.0% | |
| ATTGGGATGCAACTATTCAT+TGG | + | chr8.3:20090440-20090459 | MS.gene71937:CDS | 35.0% | |
| CATAGCCAAAACATTCATCA+TGG | - | chr8.3:20089492-20089511 | None:intergenic | 35.0% | |
| CTGGTGAATGTGATTACAAA+TGG | + | chr8.3:20089942-20089961 | MS.gene71937:CDS | 35.0% | |
| GAACTGATCTCTATAGAAAG+TGG | + | chr8.3:20090794-20090813 | MS.gene71937:CDS | 35.0% | |
| GACCTTCCAAGTATAAATTG+AGG | - | chr8.3:20089818-20089837 | None:intergenic | 35.0% | |
| GTCCTCAATTTATACTTGGA+AGG | + | chr8.3:20089813-20089832 | MS.gene71937:CDS | 35.0% | |
| GTGGGACTAATATTGAAGAT+TGG | + | chr8.3:20091268-20091287 | MS.gene71937:CDS | 35.0% | |
| GTGTAGAACCTCCATATAAT+TGG | + | chr8.3:20090587-20090606 | MS.gene71937:CDS | 35.0% | |
| GTTTAATGCTTAAGCAGAAG+AGG | + | chr8.3:20091292-20091311 | MS.gene71937:CDS | 35.0% | |
| TAGCTGAGTTTGCAAAAACA+AGG | + | chr8.3:20090881-20090900 | MS.gene71937:CDS | 35.0% | |
| TCAATCTTGCAAGGATTCAA+AGG | + | chr8.3:20090523-20090542 | MS.gene71937:CDS | 35.0% | |
| TCTGTTACGTGTTTGAATAC+TGG | + | chr8.3:20091135-20091154 | MS.gene71937:CDS | 35.0% | |
| TTAAAGTAAGTCCTTCAGCA+TGG | + | chr8.3:20090941-20090960 | MS.gene71937:CDS | 35.0% | |
| TTGGGATGCAACTATTCATT+GGG | + | chr8.3:20090441-20090460 | MS.gene71937:CDS | 35.0% | |
| ! | AGCATGGCCTATAAAAGTAT+TGG | + | chr8.3:20090957-20090976 | MS.gene71937:CDS | 35.0% |
| ! | AGGTGATGATGAAAGACAAT+TGG | + | chr8.3:20090422-20090441 | MS.gene71937:CDS | 35.0% |
| ! | GGTGATGATGAAAGACAATT+GGG | + | chr8.3:20090423-20090442 | MS.gene71937:CDS | 35.0% |
| ! | TTTTGTAGGACTTGGAAACT+CGG | + | chr8.3:20090313-20090332 | MS.gene71937:CDS | 35.0% |
| !! | GGTTTGTTGCTGTTAGATAT+AGG | + | chr8.3:20090035-20090054 | MS.gene71937:CDS | 35.0% |
| !! | TGGGATTTTGTGAGTTTTGT+AGG | + | chr8.3:20090299-20090318 | MS.gene71937:CDS | 35.0% |
| !! | TGTTTTTGCAAACTCAGCTA+GGG | - | chr8.3:20090881-20090900 | None:intergenic | 35.0% |
| !! | TTTGTGAGTTTTGTAGGACT+TGG | + | chr8.3:20090305-20090324 | MS.gene71937:CDS | 35.0% |
| !!! | CATGATGAATGTTTTGGCTA+TGG | + | chr8.3:20089490-20089509 | MS.gene71937:CDS | 35.0% |
| !!! | CTGGTGTTATCTATGAGTTT+TGG | + | chr8.3:20089561-20089580 | MS.gene71937:CDS | 35.0% |
| !!! | GAGAAAGTCCGATTAGTTTT+CGG | + | chr8.3:20090137-20090156 | MS.gene71937:CDS | 35.0% |
| !!! | GAGACTTTTTGAAGCAGTAA+CGG | + | chr8.3:20091059-20091078 | MS.gene71937:CDS | 35.0% |
| !!! | TTGTTTTTGCAAACTCAGCT+AGG | - | chr8.3:20090882-20090901 | None:intergenic | 35.0% |
| !!! | TTTTTCAAGTGGAAGGGTAT+TGG | + | chr8.3:20090092-20090111 | MS.gene71937:CDS | 35.0% |
| AATCCCAAGATCCAACACAT+AGG | - | chr8.3:20090286-20090305 | None:intergenic | 40.0% | |
| ATAGTTCAAGTAGCTGCTGT+TGG | + | chr8.3:20089983-20090002 | MS.gene71937:CDS | 40.0% | |
| ATCCCAAGATCCAACACATA+GGG | - | chr8.3:20090285-20090304 | None:intergenic | 40.0% | |
| ATGGGGAGTGACCAATTATA+TGG | - | chr8.3:20090601-20090620 | None:intergenic | 40.0% | |
| ATGTCTGCAGATCTCATCAA+AGG | + | chr8.3:20089251-20089270 | MS.gene71937:CDS | 40.0% | |
| ATTTCAGCAAACCAATGCCA+TGG | + | chr8.3:20089183-20089202 | MS.gene71937:CDS | 40.0% | |
| CACCATGCAAAGGAAGAATT+CGG | - | chr8.3:20090570-20090589 | None:intergenic | 40.0% | |
| CATTAAAGCTCGGAAAACAG+CGG | + | chr8.3:20090756-20090775 | MS.gene71937:CDS | 40.0% | |
| GATATAGGTGTCCAAATGTG+AGG | + | chr8.3:20090050-20090069 | MS.gene71937:CDS | 40.0% | |
| GCGAGAAGAATCAAACTCAA+AGG | + | chr8.3:20089709-20089728 | MS.gene71937:CDS | 40.0% | |
| GCTAATTCTATGCCTTCTCT+TGG | + | chr8.3:20089446-20089465 | MS.gene71937:CDS | 40.0% | |
| GCTATGTAGATTCCTATCCA+TGG | - | chr8.3:20089203-20089222 | None:intergenic | 40.0% | |
| TAATCGGTGGTTTAGGAAGT+TGG | + | chr8.3:20090165-20090184 | MS.gene71937:CDS | 40.0% | |
| TACCCTATGTGTTGGATCTT+GGG | + | chr8.3:20090280-20090299 | MS.gene71937:CDS | 40.0% | |
| TAGATTCCTATCCATGGCAT+TGG | - | chr8.3:20089197-20089216 | None:intergenic | 40.0% | |
| TCAGTTTCATGTACTGCTTC+TGG | + | chr8.3:20089836-20089855 | MS.gene71937:CDS | 40.0% | |
| TCCAGTGAAGATAGTACAGA+GGG | - | chr8.3:20091327-20091346 | None:intergenic | 40.0% | |
| TTACCCTATGTGTTGGATCT+TGG | + | chr8.3:20090279-20090298 | MS.gene71937:CDS | 40.0% | |
| TTGCAAGGATTCAAAGGAGT+TGG | + | chr8.3:20090529-20090548 | MS.gene71937:CDS | 40.0% | |
| TTTGACGGAAACAGCGATTA+TGG | - | chr8.3:20089339-20089358 | None:intergenic | 40.0% | |
| ! | AATGCTTGCTAGTGTCACAA+TGG | - | chr8.3:20090620-20090639 | None:intergenic | 40.0% |
| ! | ACTTCCTAAACCACCGATTA+TGG | - | chr8.3:20090165-20090184 | None:intergenic | 40.0% |
| ! | ACTTTTATAGGCCATGCTGA+AGG | - | chr8.3:20090955-20090974 | None:intergenic | 40.0% |
| ! | AGCCATGATAGTGCAAATCA+TGG | - | chr8.3:20089429-20089448 | None:intergenic | 40.0% |
| ! | ATGCTTGCTAGTGTCACAAT+GGG | - | chr8.3:20090619-20090638 | None:intergenic | 40.0% |
| ! | TGCCATGATTTGCACTATCA+TGG | + | chr8.3:20089424-20089443 | MS.gene71937:CDS | 40.0% |
| !! | AAAGAGAGCATTTCCTAGAG+TGG | + | chr8.3:20091236-20091255 | MS.gene71937:CDS | 40.0% |
| !! | CATAGGAGTGTTGAGATCAA+CGG | - | chr8.3:20089366-20089385 | None:intergenic | 40.0% |
| AGCAAACCAATGCCATGGAT+AGG | + | chr8.3:20089188-20089207 | MS.gene71937:CDS | 45.0% | |
| CGGTTTATTCTGCATCTCGA+AGG | + | chr8.3:20090382-20090401 | MS.gene71937:CDS | 45.0% | |
| CTCCAGTGAAGATAGTACAG+AGG | - | chr8.3:20091328-20091347 | None:intergenic | 45.0% | |
| CTCTGTACTATCTTCACTGG+AGG | + | chr8.3:20091326-20091345 | MS.gene71937:CDS | 45.0% | |
| GACCGAATTCTTCCTTTGCA+TGG | + | chr8.3:20090565-20090584 | MS.gene71937:CDS | 45.0% | |
| GAGATCAACGGAGAGTTTGA+CGG | - | chr8.3:20089354-20089373 | None:intergenic | 45.0% | |
| GCAACAAACCATCTCAAAGC+AGG | - | chr8.3:20090025-20090044 | None:intergenic | 45.0% | |
| GCATCAAAACCCGCAAACTA+TGG | + | chr8.3:20089273-20089292 | MS.gene71937:CDS | 45.0% | |
| GGAAAACAGCGGAAATTGTG+TGG | + | chr8.3:20090767-20090786 | MS.gene71937:CDS | 45.0% | |
| GGAAACAGCGATTATGGTCA+AGG | - | chr8.3:20089333-20089352 | None:intergenic | 45.0% | |
| GGATCCATAATCGGTGGTTT+AGG | + | chr8.3:20090158-20090177 | MS.gene71937:CDS | 45.0% | |
| GGGAGTGACCAATTATATGG+AGG | - | chr8.3:20090598-20090617 | None:intergenic | 45.0% | |
| GGTGTCCAAATGTGAGGAAA+AGG | + | chr8.3:20090056-20090075 | MS.gene71937:CDS | 45.0% | |
| GTATTGGACTGATAGGCTAG+TGG | + | chr8.3:20090108-20090127 | MS.gene71937:CDS | 45.0% | |
| TATTCTGCATCTCGAAGGAG+AGG | + | chr8.3:20090387-20090406 | MS.gene71937:CDS | 45.0% | |
| TCCCTCTGTACTATCTTCAC+TGG | + | chr8.3:20091323-20091342 | MS.gene71937:CDS | 45.0% | |
| TGCAAGGGAACCATAGTTTG+CGG | - | chr8.3:20089286-20089305 | None:intergenic | 45.0% | |
| TGGTCGGTTAAATTCTGCAC+TGG | + | chr8.3:20089923-20089942 | MS.gene71937:CDS | 45.0% | |
| TTCTGCGTTACACCAAGAGA+AGG | - | chr8.3:20089461-20089480 | None:intergenic | 45.0% | |
| ! | AAGTAGCTGCTGTTGGTGTT+GGG | + | chr8.3:20089990-20090009 | MS.gene71937:CDS | 45.0% |
| ! | CAGCTCCTTTTCCTCACATT+TGG | - | chr8.3:20090064-20090083 | None:intergenic | 45.0% |
| ! | GTTTTCGGATCCATAATCGG+TGG | + | chr8.3:20090152-20090171 | MS.gene71937:CDS | 45.0% |
| ! | TGCTTGCTAGTGTCACAATG+GGG | - | chr8.3:20090618-20090637 | None:intergenic | 45.0% |
| ! | TTTAGGATCAGGCACAAAGC+AGG | + | chr8.3:20090351-20090370 | MS.gene71937:CDS | 45.0% |
| !! | AGCGTTTCGAGTTTAGGATC+AGG | + | chr8.3:20090340-20090359 | MS.gene71937:CDS | 45.0% |
| !! | CTATTGCTCCTGCTTTGAGA+TGG | + | chr8.3:20090014-20090033 | MS.gene71937:CDS | 45.0% |
| !! | GGTTCTAGCGTTTCGAGTTT+AGG | + | chr8.3:20090334-20090353 | MS.gene71937:CDS | 45.0% |
| !! | TGGAAGGGTATTGGACTGAT+AGG | + | chr8.3:20090101-20090120 | MS.gene71937:CDS | 45.0% |
| ACAGCGGAAATTGTGTGGCT+TGG | + | chr8.3:20090772-20090791 | MS.gene71937:CDS | 50.0% | |
| CAAGTAGCTGCTGTTGGTGT+TGG | + | chr8.3:20089989-20090008 | MS.gene71937:CDS | 50.0% | |
| GCACAAAGCAGGATCTACGA+CGG | + | chr8.3:20090362-20090381 | MS.gene71937:CDS | 50.0% | |
| GCTTTGCTAGCTGATCATGC+CGG | - | chr8.3:20089394-20089413 | None:intergenic | 50.0% | |
| GGAGGTTCTACACCATGCAA+AGG | - | chr8.3:20090580-20090599 | None:intergenic | 50.0% | |
| TCAACACTCCTATGCCTCAC+CGG | + | chr8.3:20089372-20089391 | MS.gene71937:CDS | 50.0% | |
| TCTCGAAGGAGAGGAAGAGT+TGG | + | chr8.3:20090396-20090415 | MS.gene71937:CDS | 50.0% | |
| ! | AGGAGAGGAAGAGTTGGTTG+AGG | + | chr8.3:20090402-20090421 | MS.gene71937:CDS | 50.0% |
| ! | CTAGAGTGGATTTCTGCCGT+GGG | + | chr8.3:20091250-20091269 | MS.gene71937:CDS | 50.0% |
| ! | GCAAGGGAACCATAGTTTGC+GGG | - | chr8.3:20089285-20089304 | None:intergenic | 50.0% |
| CCACGGCAGAAATCCACTCT+AGG | - | chr8.3:20091252-20091271 | None:intergenic | 55.0% | |
| TGATCATGCCGGTGAGGCAT+AGG | - | chr8.3:20089383-20089402 | None:intergenic | 55.0% | |
| ! | CCTAGAGTGGATTTCTGCCG+TGG | + | chr8.3:20091249-20091268 | MS.gene71937:CDS | 55.0% |
| GCTAGCTGATCATGCCGGTG+AGG | - | chr8.3:20089389-20089408 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 20089137 | 20091407 | 20089137 | ID=MS.gene71937 |
| chr8.3 | mRNA | 20089137 | 20091407 | 20089137 | ID=MS.gene71937.t1;Parent=MS.gene71937 |
| chr8.3 | exon | 20089137 | 20091407 | 20089137 | ID=MS.gene71937.t1.exon1;Parent=MS.gene71937.t1 |
| chr8.3 | CDS | 20089137 | 20091407 | 20089137 | ID=cds.MS.gene71937.t1;Parent=MS.gene71937.t1 |
| Gene Sequence |
| Protein sequence |
