Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72099.t1 | XP_013453160.1 | 99.1 | 112 | 1 | 0 | 1 | 112 | 1 | 112 | 2.30E-57 | 231.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72099.t1 | A0A072UDJ5 | 99.1 | 112 | 1 | 0 | 1 | 112 | 1 | 112 | 1.6e-57 | 231.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049297 | MS.gene72099 | 0.801699 | 7.96E-49 | -1.69E-46 |
| MS.gene050277 | MS.gene72099 | 0.822223 | 2.66E-53 | -1.69E-46 |
| MS.gene050303 | MS.gene72099 | 0.823006 | 1.75E-53 | -1.69E-46 |
| MS.gene050987 | MS.gene72099 | 0.824868 | 6.39E-54 | -1.69E-46 |
| MS.gene051633 | MS.gene72099 | 0.835588 | 1.54E-56 | -1.69E-46 |
| MS.gene052176 | MS.gene72099 | 0.819493 | 1.13E-52 | -1.69E-46 |
| MS.gene052286 | MS.gene72099 | 0.821631 | 3.64E-53 | -1.69E-46 |
| MS.gene052302 | MS.gene72099 | 0.864881 | 8.84E-65 | -1.69E-46 |
| MS.gene052309 | MS.gene72099 | -0.843307 | 1.52E-58 | -1.69E-46 |
| MS.gene052376 | MS.gene72099 | 0.857656 | 1.41E-62 | -1.69E-46 |
| MS.gene053188 | MS.gene72099 | 0.82123 | 4.51E-53 | -1.69E-46 |
| MS.gene053216 | MS.gene72099 | 0.82124 | 4.49E-53 | -1.69E-46 |
| MS.gene053294 | MS.gene72099 | 0.810151 | 1.33E-50 | -1.69E-46 |
| MS.gene054537 | MS.gene72099 | 0.835848 | 1.32E-56 | -1.69E-46 |
| MS.gene056631 | MS.gene72099 | 0.809203 | 2.12E-50 | -1.69E-46 |
| MS.gene057079 | MS.gene72099 | 0.859177 | 4.95E-63 | -1.69E-46 |
| MS.gene057234 | MS.gene72099 | 0.810374 | 1.19E-50 | -1.69E-46 |
| MS.gene057555 | MS.gene72099 | 0.849676 | 2.78E-60 | -1.69E-46 |
| MS.gene05795 | MS.gene72099 | 0.859418 | 4.19E-63 | -1.69E-46 |
| MS.gene058055 | MS.gene72099 | 0.802427 | 5.64E-49 | -1.69E-46 |
| MS.gene058238 | MS.gene72099 | 0.816494 | 5.37E-52 | -1.69E-46 |
| MS.gene059317 | MS.gene72099 | 0.832645 | 8.40E-56 | -1.69E-46 |
| MS.gene059569 | MS.gene72099 | 0.804727 | 1.88E-49 | -1.69E-46 |
| MS.gene059899 | MS.gene72099 | 0.805417 | 1.35E-49 | -1.69E-46 |
| MS.gene060297 | MS.gene72099 | 0.828977 | 6.66E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72099.t1 | MTR_6g088605 | 99.107 | 112 | 1 | 0 | 1 | 112 | 1 | 112 | 7.21e-80 | 232 |
| MS.gene72099.t1 | MTR_7g103190 | 95.455 | 110 | 5 | 0 | 1 | 110 | 1 | 110 | 2.63e-76 | 223 |
| MS.gene72099.t1 | MTR_5g037160 | 100.000 | 35 | 0 | 0 | 62 | 96 | 409 | 443 | 5.69e-18 | 79.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72099.t1 | AT3G18760 | 74.510 | 102 | 26 | 0 | 1 | 102 | 1 | 102 | 1.17e-54 | 168 |
| MS.gene72099.t1 | AT3G18760 | 70.588 | 102 | 25 | 1 | 1 | 102 | 1 | 97 | 1.18e-48 | 152 |
Find 26 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAGCTCTTTGTTGATTTC+GGG | 0.181534 | 6.3:+82172015 | None:intergenic |
| ATGCAGCTCTTTGTTGATTT+CGG | 0.208605 | 6.3:+82172014 | None:intergenic |
| GTCACTGAGGTTAAGAGTTT+TGG | 0.239764 | 6.3:-82173508 | MS.gene72099:CDS |
| TCATGCTCACTTGCATCATT+TGG | 0.288871 | 6.3:+82172046 | None:intergenic |
| CTCTAATTGGTTTAGTTTCA+AGG | 0.335670 | 6.3:-82173564 | MS.gene72099:CDS |
| GGAACGATTCAGTTGGGTTA+TGG | 0.351815 | 6.3:-82173487 | MS.gene72099:CDS |
| TTGGTTTAGTTTCAAGGATT+GGG | 0.366475 | 6.3:-82173558 | MS.gene72099:CDS |
| AACATGTGTGTAAAAGAAAT+GGG | 0.380053 | 6.3:-82173534 | MS.gene72099:CDS |
| ATTGGTTTAGTTTCAAGGAT+TGG | 0.385789 | 6.3:-82173559 | MS.gene72099:CDS |
| GCGTGATGGCAGATTCTATC+AGG | 0.387307 | 6.3:-82173455 | MS.gene72099:intron |
| TCTTCACATAAAATAAATAG+TGG | 0.395203 | 6.3:+82171137 | None:intergenic |
| GTAGTTTGTCCTCCTTGTTT+AGG | 0.396913 | 6.3:+82171989 | None:intergenic |
| AAACATGTGTGTAAAAGAAA+TGG | 0.446983 | 6.3:-82173535 | MS.gene72099:CDS |
| CAAACTACTGCGTTGGCTAC+TGG | 0.454974 | 6.3:-82171974 | MS.gene72099:CDS |
| GAAGAACGAAATAGAAGAAC+AGG | 0.457219 | 6.3:-82171119 | MS.gene72099:CDS |
| AACAAAAGCATGCAATCATA+AGG | 0.460708 | 6.3:+82173610 | None:intergenic |
| CTTGAGTTCATGGGAGATGA+AGG | 0.503780 | 6.3:-82171925 | MS.gene72099:intron |
| AAAATTGGGCTTGAGTTCAT+GGG | 0.544552 | 6.3:-82171934 | MS.gene72099:CDS |
| AGGAGGACAAACTACTGCGT+TGG | 0.582013 | 6.3:-82171981 | MS.gene72099:CDS |
| CTTCACATAAAATAAATAGT+GGG | 0.604648 | 6.3:+82171138 | None:intergenic |
| AAGAAATGGGGTTGTCACTG+AGG | 0.631658 | 6.3:-82173521 | MS.gene72099:CDS |
| AAAAGCATGCAATCATAAGG+TGG | 0.660043 | 6.3:+82173613 | None:intergenic |
| AATGATGCAAGTGAGCATGA+TGG | 0.687340 | 6.3:-82172043 | MS.gene72099:CDS |
| ACATGTGTGTAAAAGAAATG+GGG | 0.688446 | 6.3:-82173533 | MS.gene72099:CDS |
| AGAGCTGCATTACCTAAACA+AGG | 0.691182 | 6.3:-82172001 | MS.gene72099:CDS |
| GCTGCATTACCTAAACAAGG+AGG | 0.778109 | 6.3:-82171998 | MS.gene72099:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAATAGATTATTTGTATT+TGG | - | chr6.3:82171916-82171935 | MS.gene72099:intron | 10.0% |
| !!! | CTGTTTTTTTTTTTTTTTTA+AGG | - | chr6.3:82173546-82173565 | MS.gene72099:CDS | 10.0% |
| !! | AATAAATAAATAAATCATGC+AGG | + | chr6.3:82171492-82171511 | None:intergenic | 15.0% |
| !! | TATAAAAATAGAATTTGACA+TGG | - | chr6.3:82171987-82172006 | MS.gene72099:CDS | 15.0% |
| !! | TTTGTAAAATTGTATAAGAA+TGG | + | chr6.3:82173480-82173499 | None:intergenic | 15.0% |
| !!! | TCTATTTTTTAATGAATGTA+GGG | - | chr6.3:82172661-82172680 | MS.gene72099:intron | 15.0% |
| !!! | TGTTTTTATAAACTATCTTA+AGG | - | chr6.3:82172063-82172082 | MS.gene72099:intron | 15.0% |
| !!! | TTCTATTTTTTAATGAATGT+AGG | - | chr6.3:82172660-82172679 | MS.gene72099:intron | 15.0% |
| !! | ATAGTTTATAAAAACAGTGT+AGG | + | chr6.3:82172059-82172078 | None:intergenic | 20.0% |
| !! | CAAACTTTGATAAATTATTG+AGG | - | chr6.3:82171388-82171407 | MS.gene72099:intron | 20.0% |
| !! | CTATTTAACAATACTGAAAA+TGG | + | chr6.3:82172215-82172234 | None:intergenic | 20.0% |
| !! | CTTCACATAAAATAAATAGT+GGG | + | chr6.3:82173595-82173614 | None:intergenic | 20.0% |
| !! | GTTAATTTAGTCATTATTCT+TGG | - | chr6.3:82173328-82173347 | MS.gene72099:intron | 20.0% |
| !! | TAGAGAATTTCAATCAAATA+CGG | + | chr6.3:82171690-82171709 | None:intergenic | 20.0% |
| !! | TCTTCACATAAAATAAATAG+TGG | + | chr6.3:82173596-82173615 | None:intergenic | 20.0% |
| !! | TGTTAATATGACTGATAATA+TGG | + | chr6.3:82173227-82173246 | None:intergenic | 20.0% |
| !!! | AAAAAAAAAAAGTGTAGTGT+AGG | + | chr6.3:82173427-82173446 | None:intergenic | 20.0% |
| !!! | AGTCTTTTAGATTTATAACA+TGG | + | chr6.3:82172155-82172174 | None:intergenic | 20.0% |
| ! | AAACATGTGTGTAAAAGAAA+TGG | - | chr6.3:82171195-82171214 | MS.gene72099:intron | 25.0% |
| ! | AAATAGAATTTGACATGGAT+AGG | - | chr6.3:82171992-82172011 | MS.gene72099:CDS | 25.0% |
| ! | AACATGTGTGTAAAAGAAAT+GGG | - | chr6.3:82171196-82171215 | MS.gene72099:intron | 25.0% |
| ! | AATGACTAAATTAACGCATA+AGG | + | chr6.3:82173323-82173342 | None:intergenic | 25.0% |
| ! | AATTGACTGTTTGAAAACTT+AGG | - | chr6.3:82173152-82173171 | MS.gene72099:intron | 25.0% |
| ! | GAATTTGAACAAATTGGTAT+TGG | - | chr6.3:82172252-82172271 | MS.gene72099:intron | 25.0% |
| ! | GTATTGGAATTTGAACAAAT+TGG | - | chr6.3:82172246-82172265 | MS.gene72099:intron | 25.0% |
| ! | TAAGGATGAAATCAATTCAT+GGG | - | chr6.3:82172081-82172100 | MS.gene72099:intron | 25.0% |
| ! | TTAAGGATGAAATCAATTCA+TGG | - | chr6.3:82172080-82172099 | MS.gene72099:intron | 25.0% |
| ! | TTATTGGATGTTTAAATAGC+AGG | - | chr6.3:82171858-82171877 | MS.gene72099:intron | 25.0% |
| ! | TTGTACTAAATATCGTATCA+CGG | + | chr6.3:82172301-82172320 | None:intergenic | 25.0% |
| ! | TTGTATTTGGATATATGCAT+TGG | - | chr6.3:82171929-82171948 | MS.gene72099:CDS | 25.0% |
| ! | TTTCAAACAGTCAATTTCTT+TGG | + | chr6.3:82173148-82173167 | None:intergenic | 25.0% |
| !! | AATTTTGCAAAACATGTATC+CGG | + | chr6.3:82171327-82171346 | None:intergenic | 25.0% |
| !! | TGTTTTGCAAAATTGACTAT+TGG | - | chr6.3:82171333-82171352 | MS.gene72099:intron | 25.0% |
| !!! | CTTTTTAATTAAAGAGAGAC+AGG | - | chr6.3:82171446-82171465 | MS.gene72099:intron | 25.0% |
| !!! | GTTTGAAAACTTAGGTTTTT+TGG | - | chr6.3:82173160-82173179 | MS.gene72099:intron | 25.0% |
| !!! | TGACTTTTAGAACTTTCAAT+AGG | + | chr6.3:82172466-82172485 | None:intergenic | 25.0% |
| AAAATGGTAATATCCACATG+GGG | + | chr6.3:82172199-82172218 | None:intergenic | 30.0% | |
| AAATAAATCATGCAGGCATT+GGG | + | chr6.3:82171485-82171504 | None:intergenic | 30.0% | |
| ACATGTGTGTAAAAGAAATG+GGG | - | chr6.3:82171197-82171216 | MS.gene72099:intron | 30.0% | |
| AGTGTTGTAATCATAGATTG+TGG | + | chr6.3:82172397-82172416 | None:intergenic | 30.0% | |
| ATACATTAGAAGGCCTAAAA+AGG | + | chr6.3:82173088-82173107 | None:intergenic | 30.0% | |
| ATACTTGTTTAGGTAGTGTT+TGG | + | chr6.3:82172127-82172146 | None:intergenic | 30.0% | |
| ATAGACAGGGTTTCAAAAAA+TGG | - | chr6.3:82171582-82171601 | MS.gene72099:intron | 30.0% | |
| ATATAATCTAGGTGATGTGA+TGG | - | chr6.3:82171519-82171538 | MS.gene72099:intron | 30.0% | |
| CAACAACATAATTGTGATTG+AGG | - | chr6.3:82171655-82171674 | MS.gene72099:intron | 30.0% | |
| CATGGCATAAATACTTGTTT+AGG | + | chr6.3:82172137-82172156 | None:intergenic | 30.0% | |
| CTATATGCATCACACTAATT+TGG | + | chr6.3:82171566-82171585 | None:intergenic | 30.0% | |
| GAAAATGGTAATATCCACAT+GGG | + | chr6.3:82172200-82172219 | None:intergenic | 30.0% | |
| GATGATGAATATGATAACCT+TGG | - | chr6.3:82172901-82172920 | MS.gene72099:intron | 30.0% | |
| GATGTTTAAATAGCAGGTTA+TGG | - | chr6.3:82171864-82171883 | MS.gene72099:intron | 30.0% | |
| TAAATAAATCATGCAGGCAT+TGG | + | chr6.3:82171486-82171505 | None:intergenic | 30.0% | |
| TAATGTATGTTACTGTGAAC+TGG | - | chr6.3:82173100-82173119 | MS.gene72099:intron | 30.0% | |
| TACATTAGAAGGCCTAAAAA+GGG | + | chr6.3:82173087-82173106 | None:intergenic | 30.0% | |
| TCACAGTAACATACATTAGA+AGG | + | chr6.3:82173098-82173117 | None:intergenic | 30.0% | |
| TCATAGATTGTGGAAAATAG+CGG | + | chr6.3:82172387-82172406 | None:intergenic | 30.0% | |
| TGAAAATGGTAATATCCACA+TGG | + | chr6.3:82172201-82172220 | None:intergenic | 30.0% | |
| TGAAATTCTCTACAACATCA+AGG | - | chr6.3:82171698-82171717 | MS.gene72099:intron | 30.0% | |
| TTGTTAAATAGCAGCTATAG+TGG | - | chr6.3:82172224-82172243 | MS.gene72099:intron | 30.0% | |
| TTTAATTAAAGAGAGACAGG+AGG | - | chr6.3:82171449-82171468 | MS.gene72099:intron | 30.0% | |
| ! | AACAAAAGCATGCAATCATA+AGG | + | chr6.3:82171123-82171142 | None:intergenic | 30.0% |
| ! | ATTGGTTTAGTTTCAAGGAT+TGG | - | chr6.3:82171171-82171190 | MS.gene72099:intron | 30.0% |
| ! | CTCTAATTGGTTTAGTTTCA+AGG | - | chr6.3:82171166-82171185 | MS.gene72099:intron | 30.0% |
| ! | GTGAAAAAAGAAGCTCTAAT+TGG | - | chr6.3:82171153-82171172 | MS.gene72099:CDS | 30.0% |
| ! | TCTGAAATAAATAGACCTGA+TGG | - | chr6.3:82172850-82172869 | MS.gene72099:intron | 30.0% |
| ! | TTGGTTTAGTTTCAAGGATT+GGG | - | chr6.3:82171172-82171191 | MS.gene72099:intron | 30.0% |
| !!! | AGAGCTTCTTTTTTCACATT+CGG | + | chr6.3:82171150-82171169 | None:intergenic | 30.0% |
| !!! | CTATGCAGAGTTTTAAACAA+CGG | + | chr6.3:82171754-82171773 | None:intergenic | 30.0% |
| AAAAATTGGGCTTGAGTTCA+TGG | - | chr6.3:82172795-82172814 | MS.gene72099:intron | 35.0% | |
| AAAATTGGGCTTGAGTTCAT+GGG | - | chr6.3:82172796-82172815 | MS.gene72099:intron | 35.0% | |
| AAACAGTCAATTTCTTTGGC+TGG | + | chr6.3:82173144-82173163 | None:intergenic | 35.0% | |
| AAGTGTAGTGTAGGTATGAT+TGG | + | chr6.3:82173418-82173437 | None:intergenic | 35.0% | |
| AATAGCAGCTATAGTGGTAT+TGG | - | chr6.3:82172230-82172249 | MS.gene72099:intron | 35.0% | |
| AATTGTGATTGAGGTTGCAT+TGG | - | chr6.3:82171664-82171683 | MS.gene72099:intron | 35.0% | |
| ACATAACACAACTCTTGGTT+TGG | - | chr6.3:82171822-82171841 | MS.gene72099:intron | 35.0% | |
| AGTGATTCATGTTTCAGTCA+AGG | - | chr6.3:82173392-82173411 | MS.gene72099:intron | 35.0% | |
| CATAACACAACTCTTGGTTT+GGG | - | chr6.3:82171823-82171842 | MS.gene72099:intron | 35.0% | |
| GAAGAACGAAATAGAAGAAC+AGG | - | chr6.3:82173611-82173630 | MS.gene72099:CDS | 35.0% | |
| GTTTCACATAACACAACTCT+TGG | - | chr6.3:82171817-82171836 | MS.gene72099:intron | 35.0% | |
| TAGTGTGATGCATATAGACA+GGG | - | chr6.3:82171569-82171588 | MS.gene72099:intron | 35.0% | |
| TCTTGTGTAAAAACAGGGTA+AGG | - | chr6.3:82172987-82173006 | MS.gene72099:intron | 35.0% | |
| TTAGTGTGATGCATATAGAC+AGG | - | chr6.3:82171568-82171587 | MS.gene72099:intron | 35.0% | |
| ! | AAAAGCATGCAATCATAAGG+TGG | + | chr6.3:82171120-82171139 | None:intergenic | 35.0% |
| ! | ATAACACAACTCTTGGTTTG+GGG | - | chr6.3:82171824-82171843 | MS.gene72099:intron | 35.0% |
| ! | CGTTGTTTAAAACTCTGCAT+AGG | - | chr6.3:82171752-82171771 | MS.gene72099:intron | 35.0% |
| ! | CTCACACTCATTATTTTCAC+CGG | - | chr6.3:82171305-82171324 | MS.gene72099:intron | 35.0% |
| ! | TGGGGTAGAAGTTGATTTAT+TGG | - | chr6.3:82171842-82171861 | MS.gene72099:intron | 35.0% |
| ! | TTAGTTTGAGAGTCTGTCTT+TGG | - | chr6.3:82172564-82172583 | MS.gene72099:intron | 35.0% |
| !! | ATGCAGCTCTTTGTTGATTT+CGG | + | chr6.3:82172719-82172738 | None:intergenic | 35.0% |
| !!! | AGTTTTGGAACGATTCAGTT+GGG | - | chr6.3:82171237-82171256 | MS.gene72099:intron | 35.0% |
| !!! | TTACCCTGTTTTTACACAAG+AGG | + | chr6.3:82172988-82173007 | None:intergenic | 35.0% |
| AAAAGAGTTGCACGTTCTTC+TGG | - | chr6.3:82172594-82172613 | MS.gene72099:intron | 40.0% | |
| AAGCAGCGTGACACAAAAAT+TGG | - | chr6.3:82172781-82172800 | MS.gene72099:intron | 40.0% | |
| AATGATGCAAGTGAGCATGA+TGG | - | chr6.3:82172687-82172706 | MS.gene72099:intron | 40.0% | |
| ACAGCCTCTTGTGTAAAAAC+AGG | - | chr6.3:82172981-82173000 | MS.gene72099:intron | 40.0% | |
| AGAGCTGCATTACCTAAACA+AGG | - | chr6.3:82172729-82172748 | MS.gene72099:intron | 40.0% | |
| AGCAGCGTGACACAAAAATT+GGG | - | chr6.3:82172782-82172801 | MS.gene72099:intron | 40.0% | |
| CAGCCTCTTGTGTAAAAACA+GGG | - | chr6.3:82172982-82173001 | MS.gene72099:intron | 40.0% | |
| CATGGATAGGAGACAAAAAG+TGG | - | chr6.3:82172005-82172024 | MS.gene72099:CDS | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | - | chr6.3:82173013-82173032 | MS.gene72099:intron | 40.0% | |
| TCATGCTCACTTGCATCATT+TGG | + | chr6.3:82172687-82172706 | None:intergenic | 40.0% | |
| ! | AATAAATAGACCTGATGGCG+AGG | - | chr6.3:82172855-82172874 | MS.gene72099:intron | 40.0% |
| ! | GCAACACAATGCTTTTGATG+TGG | - | chr6.3:82171626-82171645 | MS.gene72099:intron | 40.0% |
| ! | GTAGTTTGTCCTCCTTGTTT+AGG | + | chr6.3:82172744-82172763 | None:intergenic | 40.0% |
| ! | GTCACTGAGGTTAAGAGTTT+TGG | - | chr6.3:82171222-82171241 | MS.gene72099:intron | 40.0% |
| ! | TATGGTGTGAAAAAGCGTGA+TGG | - | chr6.3:82171261-82171280 | MS.gene72099:intron | 40.0% |
| !! | TGCAGCTCTTTGTTGATTTC+GGG | + | chr6.3:82172718-82172737 | None:intergenic | 40.0% |
| !!! | GAGTTTTGGAACGATTCAGT+TGG | - | chr6.3:82171236-82171255 | MS.gene72099:intron | 40.0% |
| AACGGTCAGTGTATCTGTTG+TGG | + | chr6.3:82171736-82171755 | None:intergenic | 45.0% | |
| AAGAAATGGGGTTGTCACTG+AGG | - | chr6.3:82171209-82171228 | MS.gene72099:intron | 45.0% | |
| ATGGTTCGATTCTGTAGCAC+AGG | - | chr6.3:82171601-82171620 | MS.gene72099:intron | 45.0% | |
| CTGCATAGGTAGATGCGAAT+TGG | - | chr6.3:82171766-82171785 | MS.gene72099:intron | 45.0% | |
| CTTGAGTTCATGGGAGATGA+AGG | - | chr6.3:82172805-82172824 | MS.gene72099:intron | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | - | chr6.3:82173012-82173031 | MS.gene72099:intron | 45.0% | |
| GCTGCATTACCTAAACAAGG+AGG | - | chr6.3:82172732-82172751 | MS.gene72099:intron | 45.0% | |
| GCTGCGTACAATACACCAAA+TGG | - | chr6.3:82173009-82173028 | MS.gene72099:intron | 45.0% | |
| GGAACGATTCAGTTGGGTTA+TGG | - | chr6.3:82171243-82171262 | MS.gene72099:intron | 45.0% | |
| GTTGTTGTCATGTGACCGTA+AGG | - | chr6.3:82172937-82172956 | MS.gene72099:intron | 45.0% | |
| TATGATAACCTTGGCGCAAC+TGG | - | chr6.3:82172910-82172929 | MS.gene72099:intron | 45.0% | |
| ! | TTACACAAGAGGCTGTTTCC+AGG | + | chr6.3:82172977-82172996 | None:intergenic | 45.0% |
| !! | CGTTCTTCTGGAACTTCGAA+TGG | - | chr6.3:82172606-82172625 | MS.gene72099:intron | 45.0% |
| !! | TCTTTGGCTGGTTTAGCATC+AGG | + | chr6.3:82173132-82173151 | None:intergenic | 45.0% |
| !! | TATTTATTTATATATAATCT+AGG | - | chr6.3:82171508-82171527 | MS.gene72099:intron | 5.0% |
| !!! | TGTTTTTTTTTTTTTTTTAA+GGG | - | chr6.3:82173547-82173566 | MS.gene72099:CDS | 5.0% |
| AAGGCCTAAAAAGGGCAACC+CGG | + | chr6.3:82173079-82173098 | None:intergenic | 50.0% | |
| AGGAGGACAAACTACTGCGT+TGG | - | chr6.3:82172749-82172768 | MS.gene72099:intron | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | + | chr6.3:82172921-82172940 | None:intergenic | 50.0% | |
| CCTCTTCTAAATGCCCCATG+TGG | - | chr6.3:82172183-82172202 | MS.gene72099:intron | 50.0% | |
| CGGTGTGTTCAAACTCCACT+AGG | + | chr6.3:82172367-82172386 | None:intergenic | 50.0% | |
| GACTTGAACCCGTGACCTTA+CGG | + | chr6.3:82172955-82172974 | None:intergenic | 50.0% | |
| GCGTGATGGCAGATTCTATC+AGG | - | chr6.3:82171275-82171294 | MS.gene72099:intron | 50.0% | |
| GCTATAGCACTGTTGCCTAG+TGG | - | chr6.3:82172349-82172368 | MS.gene72099:intron | 50.0% | |
| GGCGAGGATAGTGATACAGA+CGG | - | chr6.3:82172871-82172890 | MS.gene72099:intron | 50.0% | |
| GTATCACTATCCTCGCCATC+AGG | + | chr6.3:82172868-82172887 | None:intergenic | 50.0% | |
| GTCATGTGACCGTAAGGTCA+CGG | - | chr6.3:82172943-82172962 | MS.gene72099:intron | 50.0% | |
| TCATGTGACCGTAAGGTCAC+GGG | - | chr6.3:82172944-82172963 | MS.gene72099:intron | 50.0% | |
| ! | CCACATGGGGCATTTAGAAG+AGG | + | chr6.3:82172186-82172205 | None:intergenic | 50.0% |
| !! | CAAACTACTGCGTTGGCTAC+TGG | - | chr6.3:82172756-82172775 | MS.gene72099:intron | 50.0% |
| AAGGTCACGGGTTCAAGTCC+TGG | - | chr6.3:82172956-82172975 | MS.gene72099:intron | 55.0% | |
| ACTGAAGCTCCCGCATATGC+AGG | + | chr6.3:82173053-82173072 | None:intergenic | 55.0% | |
| CTGAAGCTCCCGCATATGCA+GGG | + | chr6.3:82173052-82173071 | None:intergenic | 55.0% | |
| ! | TGCACCGGGTTGCCCTTTTT+AGG | - | chr6.3:82173072-82173091 | MS.gene72099:intron | 55.0% |
| ATGCGGGAGCTTCAGTGCAC+CGG | - | chr6.3:82173057-82173076 | MS.gene72099:intron | 60.0% | |
| CATATGCAGGGTCCGGGAAG+GGG | + | chr6.3:82173040-82173059 | None:intergenic | 60.0% | |
| CTTCCCGGACCCTGCATATG+CGG | - | chr6.3:82173040-82173059 | MS.gene72099:intron | 60.0% | |
| GCATATGCAGGGTCCGGGAA+GGG | + | chr6.3:82173041-82173060 | None:intergenic | 60.0% | |
| TTCCCGGACCCTGCATATGC+GGG | - | chr6.3:82173041-82173060 | MS.gene72099:intron | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+CGG | - | chr6.3:82173025-82173044 | MS.gene72099:intron | 60.0% |
| CGCATATGCAGGGTCCGGGA+AGG | + | chr6.3:82173042-82173061 | None:intergenic | 65.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | + | chr6.3:82173027-82173046 | None:intergenic | 65.0% | |
| CTCCCGCATATGCAGGGTCC+GGG | + | chr6.3:82173046-82173065 | None:intergenic | 65.0% | |
| GCTCCCGCATATGCAGGGTC+CGG | + | chr6.3:82173047-82173066 | None:intergenic | 65.0% | |
| TGCGGGAGCTTCAGTGCACC+GGG | - | chr6.3:82173058-82173077 | MS.gene72099:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 82171114 | 82173638 | 82171114 | ID=MS.gene72099 |
| chr6.3 | mRNA | 82171114 | 82173638 | 82171114 | ID=MS.gene72099.t1;Parent=MS.gene72099 |
| chr6.3 | exon | 82173456 | 82173638 | 82173456 | ID=MS.gene72099.t1.exon1;Parent=MS.gene72099.t1 |
| chr6.3 | CDS | 82173456 | 82173638 | 82173456 | ID=cds.MS.gene72099.t1;Parent=MS.gene72099.t1 |
| chr6.3 | exon | 82171926 | 82172070 | 82171926 | ID=MS.gene72099.t1.exon2;Parent=MS.gene72099.t1 |
| chr6.3 | CDS | 82171926 | 82172070 | 82171926 | ID=cds.MS.gene72099.t1;Parent=MS.gene72099.t1 |
| chr6.3 | exon | 82171114 | 82171184 | 82171114 | ID=MS.gene72099.t1.exon3;Parent=MS.gene72099.t1 |
| chr6.3 | CDS | 82171114 | 82171184 | 82171114 | ID=cds.MS.gene72099.t1;Parent=MS.gene72099.t1 |
| Gene Sequence |
| Protein sequence |
