AlfalfaGEDB | MS.gene72099

M. sativa cultivar XinJiangDaYe / MS.gene72099

KEGG: K02990
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0019538 GO:0019843 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0071704 GO:0097159 GO:0110165 GO:1901363 GO:1901564 GO:1901566 GO:1901576
PFAM: PF01250.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72099.t1	XP_013453160.1	99.1	112	1	0	1	112	1	112	2.30E-57	231.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72099.t1	A0A072UDJ5	99.1	112	1	0	1	112	1	112	1.6e-57	231.5

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049297	MS.gene72099	0.801699	7.96E-49	-1.69E-46
MS.gene050277	MS.gene72099	0.822223	2.66E-53	-1.69E-46
MS.gene050303	MS.gene72099	0.823006	1.75E-53	-1.69E-46
MS.gene050987	MS.gene72099	0.824868	6.39E-54	-1.69E-46
MS.gene051633	MS.gene72099	0.835588	1.54E-56	-1.69E-46
MS.gene052176	MS.gene72099	0.819493	1.13E-52	-1.69E-46
MS.gene052286	MS.gene72099	0.821631	3.64E-53	-1.69E-46
MS.gene052302	MS.gene72099	0.864881	8.84E-65	-1.69E-46
MS.gene052309	MS.gene72099	-0.843307	1.52E-58	-1.69E-46
MS.gene052376	MS.gene72099	0.857656	1.41E-62	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72099.t1	MTR_6g088605	99.107	112	1	1	112	1	112	7.21e-80	232
MS.gene72099.t1	MTR_7g103190	95.455	110	5	1	110	1	110	2.63e-76	223
MS.gene72099.t1	MTR_5g037160	100.000	35	0	62	96	409	443	5.69e-18	79.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72099.t1	AT3G18760	74.510	102	26	0	1	102	1	102	1.17e-54	168
MS.gene72099.t1	AT3G18760	70.588	102	25	1	1	102	1	97	1.18e-48	152

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Find 26 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCATGCAATCATAAGG+TGG	0.660043	6.3:+82173613	None:intergenic
AAAATTGGGCTTGAGTTCAT+GGG	0.544552	6.3:-82171934	MS.gene72099:CDS
AAACATGTGTGTAAAAGAAA+TGG	0.446983	6.3:-82173535	MS.gene72099:CDS
AACAAAAGCATGCAATCATA+AGG	0.460708	6.3:+82173610	None:intergenic
AACATGTGTGTAAAAGAAAT+GGG	0.380053	6.3:-82173534	MS.gene72099:CDS
AAGAAATGGGGTTGTCACTG+AGG	0.631658	6.3:-82173521	MS.gene72099:CDS
AATGATGCAAGTGAGCATGA+TGG	0.687340	6.3:-82172043	MS.gene72099:CDS
ACATGTGTGTAAAAGAAATG+GGG	0.688446	6.3:-82173533	MS.gene72099:CDS
AGAGCTGCATTACCTAAACA+AGG	0.691182	6.3:-82172001	MS.gene72099:CDS
AGGAGGACAAACTACTGCGT+TGG	0.582013	6.3:-82171981	MS.gene72099:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATGGTAATATCCACATG+GGG	+	chr6.3:82172199-82172218	None:intergenic	30.0%
AAATAAATCATGCAGGCATT+GGG	+	chr6.3:82171485-82171504	None:intergenic	30.0%
ACATGTGTGTAAAAGAAATG+GGG	-	chr6.3:82171197-82171216	MS.gene72099:intron	30.0%
AGTGTTGTAATCATAGATTG+TGG	+	chr6.3:82172397-82172416	None:intergenic	30.0%
ATACATTAGAAGGCCTAAAA+AGG	+	chr6.3:82173088-82173107	None:intergenic	30.0%
ATACTTGTTTAGGTAGTGTT+TGG	+	chr6.3:82172127-82172146	None:intergenic	30.0%
ATAGACAGGGTTTCAAAAAA+TGG	-	chr6.3:82171582-82171601	MS.gene72099:intron	30.0%
ATATAATCTAGGTGATGTGA+TGG	-	chr6.3:82171519-82171538	MS.gene72099:intron	30.0%
CAACAACATAATTGTGATTG+AGG	-	chr6.3:82171655-82171674	MS.gene72099:intron	30.0%
CATGGCATAAATACTTGTTT+AGG	+	chr6.3:82172137-82172156	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.3	gene	82171114	82173638	82171114	ID=MS.gene72099
chr6.3	mRNA	82171114	82173638	82171114	ID=MS.gene72099.t1;Parent=MS.gene72099
chr6.3	exon	82173456	82173638	82173456	ID=MS.gene72099.t1.exon1;Parent=MS.gene72099.t1
chr6.3	CDS	82173456	82173638	82173456	ID=cds.MS.gene72099.t1;Parent=MS.gene72099.t1
chr6.3	exon	82171926	82172070	82171926	ID=MS.gene72099.t1.exon2;Parent=MS.gene72099.t1
chr6.3	CDS	82171926	82172070	82171926	ID=cds.MS.gene72099.t1;Parent=MS.gene72099.t1
chr6.3	exon	82171114	82171184	82171114	ID=MS.gene72099.t1.exon3;Parent=MS.gene72099.t1
chr6.3	CDS	82171114	82171184	82171114	ID=cds.MS.gene72099.t1;Parent=MS.gene72099.t1

Gene Sequence

>MS.gene72099

ATGCCACCTTATGATTGCATGCTTTTGTTCAAGCCGAATGTGAAAAAAGAAGCTCTAATTGGTTTAGTTTCAAGGATTGGGAAACATGTGTGTAAAAGAAATGGGGTTGTCACTGAGGTTAAGAGTTTTGGAACGATTCAGTTGGGTTATGGTGTGAAAAAGCGTGATGGCAGATTCTATCAGGTGAGAGTCTCACACTCATTATTTTCACCGGATACATGTTTTGCAAAATTGACTATTGGATTGAAAGCTTATATCACATAGATAATTTGCACAAACTTTGATAAATTATTGAGGTGCGTCTAGATTAACATCGTATTTTTAAAAGAAAACTTTTTAATTAAAGAGAGACAGGAGGTGTACTCTAACCCAATGCCTGCATGATTTATTTATTTATTTATTTATATATAATCTAGGTGATGTGATGGACAACTGTGCTAGAAAAATTACCAAATTAGTGTGATGCATATAGACAGGGTTTCAAAAAATGGTTCGATTCTGTAGCACAGGCAGCAACACAATGCTTTTGATGTGGCTGAAACAACAACATAATTGTGATTGAGGTTGCATTGGCCGTATTTGATTGAAATTCTCTACAACATCAAGGATTATGACACGACCACAACAGATACACTGACCGTTGTTTAAAACTCTGCATAGGTAGATGCGAATTGGTTTTTTGATACTTGATAGTGTATTAGATGTTTCACATAACACAACTCTTGGTTTGGGGTAGAAGTTGATTTATTGGATGTTTAAATAGCAGGTTATGGAGACAGCTTAATTAATTGAAGCAGTTAAATTAAATAGATTATTTGTATTTGGATATATGCATTGGAAATCTATTTGTGTTCTCAATATTTGTTCTTCGAGTATAAAAATAGAATTTGACATGGATAGGAGACAAAAAGTGGACGATAAATAAGCTTTGCATAAATTTTACCTACACTGTTTTTATAAACTATCTTAAGGATGAAATCAATTCATGGGTATGTACTATGTAAACTCTTCCAAACACTACCTAAACAAGTATTTATGCCATGTTATAAATCTAAAAGACTCTAATCAACCTCTTCTAAATGCCCCATGTGGATATTACCATTTTCAGTATTGTTAAATAGCAGCTATAGTGGTATTGGAATTTGAACAAATTGGTATTGGAATTTGAACAAATCACTATTGTTCCGTGATACGATATTTAGTACAAAATGTTGTCAAATAGTGACTATAAAAATGCTATAGCACTGTTGCCTAGTGGAGTTTGAACACACCGCTATTTTCCACAATCTATGATTACAACACTGACTATTATAGTCAATAAGATTCAATAACATGAATACAAAGAACAACCTATTGAAAGTTCTAAAAGTCAAGTGTTTATTGAATGTGTTTATTGAATGTGCTGTTTTACACATGCTGCTGACGAAGTTTCAGCAAATTTGCATATTTCTTAGTTTGAGAGTCTGTCTTTGGTGAAACAAAAAGAGTTGCACGTTCTTCTGGAACTTCGAATGGAAATTATGCAATTGTTAAGTTTGTTGTTCTTTTCTATTTTTTAATGAATGTAGGGCCAAATGATGCAAGTGAGCATGATGGCTACACCCGAAATCAACAAAGAGCTGCATTACCTAAACAAGGAGGACAAACTACTGCGTTGGCTACTGGTTAAGCAGCGTGACACAAAAATTGGGCTTGAGTTCATGGGAGATGAAGGTAGATTCGAGCTAAACAGATTCTCTGAAATAAATAGACCTGATGGCGAGGATAGTGATACAGACGGAGATGATGATGATGAATATGATAACCTTGGCGCAACTGGTAAAGTTGTTGTCATGTGACCGTAAGGTCACGGGTTCAAGTCCTGGAAACAGCCTCTTGTGTAAAAACAGGGTAAGGCTGCGTACAATACACCAAATGGTGGGACCCCTTCCCGGACCCTGCATATGCGGGAGCTTCAGTGCACCGGGTTGCCCTTTTTAGGCCTTCTAATGTATGTTACTGTGAACTGGTGCTTACCTGATGCTAAACCAGCCAAAGAAATTGACTGTTTGAAAACTTAGGTTTTTTGGCAGTTGTAACGCACGTCTACTTGAGTCTGAAATCATAGATTCCATATTATCAGTCATATTAACAAAAAACGCTTTAAACATGAAAAATGAAATCAAGCAAAGTAAGTTCACTTAGTTTGAATTAAATATTCATGTATCCTTATGCGTTAATTTAGTCATTATTCTTGGTAAAAATTACATTATTCTTGAAGTGAAATTAGTAGTTTAAGAGTGATTCATGTTTCAGTCAAGGCCAATCATACCTACACTACACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATTCTCACCATTCTTATACAATTTTACAAAATTAACTAAAAAAATATTTCTCATGCTCTCTTTAATGTTCATACAACTGTTTTTTTTTTTTTTTTAAGGGATGTTCATACAAATGTTACATACCCACTATTTATTTTATGTGAAGAACGAAATAGAAGAACAGGTATGA

Protein sequence

>MS.gene72099.t1

MPPYDCMLLFKPNVKKEALIGLVSRIGKHVCKRNGVVTEVKSFGTIQLGYGVKKRDGRFYQGQMMQVSMMATPEINKELHYLNKEDKLLRWLLVKQRDTKIGLEFMGDEGMFIQMLHTHYLFYVKNEIEEQV