Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene73478.t1 | XP_003592554.2 | 98.8 | 518 | 6 | 0 | 588 | 1105 | 43 | 560 | 1.10E-293 | 1019.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene73478.t1 | P08770 | 33.7 | 614 | 341 | 12 | 29 | 578 | 140 | 751 | 4.7e-88 | 327.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene73478.t1 | G7IAT4 | 98.8 | 518 | 6 | 0 | 588 | 1105 | 43 | 560 | 7.8e-294 | 1019.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050379 | MS.gene73478 | 0.808948 | 2.41E-50 | -1.69E-46 |
MS.gene051637 | MS.gene73478 | 0.820346 | 7.20E-53 | -1.69E-46 |
MS.gene051959 | MS.gene73478 | 0.822956 | 1.80E-53 | -1.69E-46 |
MS.gene051960 | MS.gene73478 | 0.829141 | 6.08E-55 | -1.69E-46 |
MS.gene054892 | MS.gene73478 | 0.815089 | 1.11E-51 | -1.69E-46 |
MS.gene054893 | MS.gene73478 | 0.815513 | 8.89E-52 | -1.69E-46 |
MS.gene057148 | MS.gene73478 | -0.807933 | 3.97E-50 | -1.69E-46 |
MS.gene058592 | MS.gene73478 | 0.809107 | 2.23E-50 | -1.69E-46 |
MS.gene05985 | MS.gene73478 | -0.811928 | 5.48E-51 | -1.69E-46 |
MS.gene060522 | MS.gene73478 | 0.827826 | 1.26E-54 | -1.69E-46 |
MS.gene060964 | MS.gene73478 | 0.809349 | 1.98E-50 | -1.69E-46 |
MS.gene061188 | MS.gene73478 | 0.800406 | 1.46E-48 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene73478.t1 | MTR_1g108460 | 98.842 | 518 | 6 | 0 | 588 | 1105 | 43 | 560 | 0.0 | 1063 |
MS.gene73478.t1 | MTR_1g108460 | 99.474 | 380 | 2 | 0 | 588 | 967 | 43 | 422 | 0.0 | 788 |
MS.gene73478.t1 | MTR_2g450550 | 46.567 | 466 | 246 | 3 | 611 | 1074 | 57 | 521 | 2.35e-132 | 412 |
MS.gene73478.t1 | MTR_3g106510 | 42.191 | 493 | 281 | 4 | 607 | 1097 | 53 | 543 | 5.13e-126 | 397 |
MS.gene73478.t1 | MTR_2g450550 | 46.995 | 366 | 192 | 2 | 710 | 1074 | 52 | 416 | 5.33e-112 | 355 |
MS.gene73478.t1 | MTR_4g116290 | 36.842 | 475 | 284 | 5 | 596 | 1067 | 25 | 486 | 1.04e-98 | 322 |
MS.gene73478.t1 | MTR_2g450550 | 44.568 | 359 | 197 | 2 | 611 | 967 | 57 | 415 | 3.45e-88 | 292 |
MS.gene73478.t1 | MTR_2g099140 | 26.871 | 521 | 321 | 16 | 600 | 1089 | 20 | 511 | 5.41e-38 | 150 |
MS.gene73478.t1 | MTR_2g099140 | 26.891 | 476 | 296 | 13 | 617 | 1069 | 54 | 500 | 8.14e-37 | 147 |
MS.gene73478.t1 | MTR_5g015390 | 20.524 | 458 | 310 | 12 | 625 | 1067 | 43 | 461 | 1.52e-13 | 75.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene73478.t1 | AT1G71110 | 62.628 | 487 | 174 | 3 | 593 | 1074 | 42 | 525 | 0.0 | 640 |
MS.gene73478.t1 | AT2G12400 | 42.917 | 480 | 271 | 3 | 597 | 1074 | 46 | 524 | 1.78e-124 | 392 |
MS.gene73478.t1 | AT2G25270 | 38.900 | 509 | 300 | 4 | 586 | 1083 | 32 | 540 | 8.85e-123 | 388 |
MS.gene73478.t1 | AT3G42170 | 30.564 | 638 | 368 | 13 | 7 | 578 | 24 | 652 | 6.59e-92 | 309 |
MS.gene73478.t1 | AT3G42170 | 30.564 | 638 | 368 | 13 | 7 | 578 | 46 | 674 | 9.59e-92 | 309 |
MS.gene73478.t1 | AT1G80540 | 36.344 | 465 | 287 | 6 | 616 | 1072 | 18 | 481 | 1.79e-90 | 300 |
MS.gene73478.t1 | AT1G80540 | 36.344 | 465 | 287 | 6 | 616 | 1072 | 64 | 527 | 4.50e-90 | 300 |
MS.gene73478.t1 | AT1G80540 | 35.121 | 373 | 238 | 4 | 704 | 1072 | 2 | 374 | 1.42e-69 | 238 |
MS.gene73478.t1 | AT1G18560 | 23.756 | 623 | 401 | 17 | 21 | 585 | 46 | 652 | 1.23e-32 | 136 |
MS.gene73478.t1 | AT5G67550 | 21.667 | 480 | 335 | 14 | 622 | 1079 | 36 | 496 | 3.00e-21 | 99.4 |
Find 225 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTCTGAACTTGAAATATATT+TGG | 0.161518 | 1.4:+83272412 | MS.gene73478:CDS |
AATGTCACAAACTTGATTTC+TGG | 0.171690 | 1.4:+83271784 | MS.gene73478:CDS |
AAGTATCTGGTTGACGTTTA+TGG | 0.177193 | 1.4:-83276392 | None:intergenic |
ATAAGAGCTTGAACAGTTTC+AGG | 0.181881 | 1.4:-83272617 | None:intergenic |
TTCTGCTTTGCCTTGTTCTA+TGG | 0.194171 | 1.4:+83278392 | MS.gene73478:CDS |
CTTTCCGCAACTTGCATTAA+TGG | 0.195317 | 1.4:+83272496 | MS.gene73478:CDS |
AAGTTTGTGACATTATAAAA+TGG | 0.208424 | 1.4:-83271775 | None:intergenic |
CACAAACACTTCTCCCCTTT+GGG | 0.225734 | 1.4:-83278434 | None:intergenic |
CTCTTATTTGTACACGTAAT+TGG | 0.228872 | 1.4:+83272633 | MS.gene73478:CDS |
ATTCAACCTTTCTTTCAAAA+TGG | 0.247642 | 1.4:-83271368 | None:intergenic |
GTTTCATTCTTGCCGTCTTA+TGG | 0.256105 | 1.4:+83275656 | MS.gene73478:CDS |
TGGAAATTCTTTACAAAGAT+TGG | 0.261335 | 1.4:+83270710 | MS.gene73478:CDS |
GTTGACAATATTTGCAATAT+TGG | 0.267190 | 1.4:-83277388 | None:intergenic |
TTCCAAGAGGCTGGACCTTC+TGG | 0.272218 | 1.4:+83272665 | MS.gene73478:CDS |
ATATTTCAGATCGGCATTAT+TGG | 0.275242 | 1.4:+83274834 | MS.gene73478:CDS |
CTCTTATTCTGGCGGCAAAT+AGG | 0.276223 | 1.4:+83274759 | MS.gene73478:CDS |
GTCTTATGGTTTGTCTCATT+TGG | 0.281337 | 1.4:+83275670 | MS.gene73478:CDS |
GTCCTACATTAATGATATTA+AGG | 0.293341 | 1.4:-83278348 | None:intergenic |
TGTTATCACTGGATGGTTAC+TGG | 0.300691 | 1.4:+83276925 | MS.gene73478:CDS |
ATATTAAGGTAATGCTTTAA+TGG | 0.308224 | 1.4:-83278334 | None:intergenic |
CATACAGGGTTGGAATTATC+TGG | 0.316018 | 1.4:+83271253 | MS.gene73478:CDS |
TATTTCAGATCGGCATTATT+GGG | 0.318265 | 1.4:+83274835 | MS.gene73478:CDS |
AGGTGATAATACTCTTATTC+TGG | 0.339822 | 1.4:+83274748 | MS.gene73478:CDS |
GGAGAAGATGTGTAGTTTCT+TGG | 0.340016 | 1.4:+83271750 | MS.gene73478:CDS |
AAAAGTACTTGGTGCTCTTA+AGG | 0.342451 | 1.4:+83271276 | MS.gene73478:CDS |
CAAGCTGGTTTGGCTGTGGC+AGG | 0.343588 | 1.4:+83271466 | MS.gene73478:CDS |
TCATACTCAGCGTAACTAAA+AGG | 0.344180 | 1.4:-83270962 | None:intergenic |
CTACTTATCGAAACAAAATC+AGG | 0.347248 | 1.4:-83271016 | None:intergenic |
CTTTCCCACTCTTCAATGCT+TGG | 0.350551 | 1.4:-83271724 | None:intergenic |
TGATGCTTGAAAGTGCTATT+AGG | 0.355388 | 1.4:+83271647 | MS.gene73478:CDS |
ACAAAGATTGGTATAGTTGA+TGG | 0.368292 | 1.4:+83270722 | MS.gene73478:CDS |
TCACAAACACTTCTCCCCTT+TGG | 0.370346 | 1.4:-83278435 | None:intergenic |
GCGCACGGCCTTGTTTGTTA+TGG | 0.371299 | 1.4:+83276621 | MS.gene73478:CDS |
TCACCTAGTGGCCCTGGTGC+TGG | 0.373820 | 1.4:-83274731 | None:intergenic |
TTCTGATACTTGCATGGCTA+TGG | 0.374645 | 1.4:+83277257 | MS.gene73478:CDS |
ACTTGGTGCTCTTAAGGATT+GGG | 0.376259 | 1.4:+83271282 | MS.gene73478:CDS |
CTCTTGGCTCTAACTGGACT+AGG | 0.381640 | 1.4:+83276658 | MS.gene73478:CDS |
AGTTTGTGACATTATAAAAT+GGG | 0.385168 | 1.4:-83271774 | None:intergenic |
AACAAAAGTTTGCTAAGTAT+TGG | 0.386151 | 1.4:+83271923 | MS.gene73478:CDS |
TCAGAAGCCACTGTTGTGAT+TGG | 0.386679 | 1.4:-83272539 | None:intergenic |
AGCTGGTTTGGCTGTGGCAG+GGG | 0.391517 | 1.4:+83271468 | MS.gene73478:CDS |
TATCATAGTTCAAGCTGGTT+TGG | 0.394814 | 1.4:+83271456 | MS.gene73478:CDS |
GGATGTATTCTCCTTTCTGT+TGG | 0.395056 | 1.4:+83276256 | MS.gene73478:CDS |
CTCATTATGTTGACAAAGGT+TGG | 0.399210 | 1.4:+83271185 | MS.gene73478:CDS |
GCTAACTGCAAGTAAATCTC+TGG | 0.399430 | 1.4:-83278196 | None:intergenic |
ATGGTTTGTCTCATTTGGCT+TGG | 0.401760 | 1.4:+83275675 | MS.gene73478:CDS |
AGGTTGGTTCATCAAGTGTT+TGG | 0.404644 | 1.4:+83270690 | MS.gene73478:CDS |
TACCAGAAGGTCCAGCCTCT+TGG | 0.408518 | 1.4:-83272667 | None:intergenic |
TAGACTTCACTGCCTGCATT+TGG | 0.410089 | 1.4:-83278526 | None:intergenic |
TATTTAACTTCCAATATTGA+AGG | 0.411495 | 1.4:-83272466 | None:intergenic |
TTTGTCTGACTTCTGATGTA+TGG | 0.411996 | 1.4:+83271125 | MS.gene73478:CDS |
TCGAAGAAAATCAGGTCTAT+TGG | 0.415895 | 1.4:-83274783 | None:intergenic |
TTGCATGGTTTCCAAGAGGC+TGG | 0.419335 | 1.4:+83272656 | MS.gene73478:CDS |
TGAAATCCTCGAAGAAAATC+AGG | 0.422490 | 1.4:-83274791 | None:intergenic |
ATGTAGATGTCCTTCAATAT+TGG | 0.424107 | 1.4:+83272456 | MS.gene73478:CDS |
TTGCATGAAGTATAAGTTTG+AGG | 0.425909 | 1.4:-83271821 | None:intergenic |
CATCAGATGGAAGAAGTATC+TGG | 0.429382 | 1.4:-83276405 | None:intergenic |
TAAGTTTCACGGCGAGGCCT+TGG | 0.429494 | 1.4:+83276285 | MS.gene73478:CDS |
CCAACCTTTGTTGTATTAGC+AGG | 0.429512 | 1.4:-83270674 | None:intergenic |
TTCATCTGCCAATGCTTCAA+TGG | 0.432553 | 1.4:+83277551 | MS.gene73478:CDS |
AAGAGGTGGTTTCTTGAGGT+TGG | 0.434744 | 1.4:+83271594 | MS.gene73478:CDS |
ACAAAATCCATCTTTGATGT+TGG | 0.439067 | 1.4:-83271988 | None:intergenic |
TATTCTCCTTTCTGTTGGGC+AGG | 0.443697 | 1.4:+83276261 | MS.gene73478:CDS |
ACCTTCTCTTCATAATCACT+TGG | 0.443768 | 1.4:-83272036 | None:intergenic |
CATTTGGATAGTGCACATAC+AGG | 0.444127 | 1.4:+83271238 | MS.gene73478:CDS |
GATGTATTCTCCTTTCTGTT+GGG | 0.445649 | 1.4:+83276257 | MS.gene73478:CDS |
TACTTGGTGCTCTTAAGGAT+TGG | 0.445687 | 1.4:+83271281 | MS.gene73478:CDS |
CAAAGATTGGTATAGTTGAT+GGG | 0.446087 | 1.4:+83270723 | MS.gene73478:CDS |
GGATAGCATAGTGGCGGCAT+TGG | 0.448863 | 1.4:-83277483 | None:intergenic |
ATACAAAAGGTTTCAAATGA+TGG | 0.448912 | 1.4:+83272386 | MS.gene73478:CDS |
CGTGAGTTAGCATCTATTCC+AGG | 0.449492 | 1.4:+83271097 | MS.gene73478:CDS |
GGTTACCATGCTATCATTGT+TGG | 0.449893 | 1.4:-83271347 | None:intergenic |
ACGGCCTTGTTTGTTATGGC+AGG | 0.454318 | 1.4:+83276625 | MS.gene73478:CDS |
TTCATCGTTATCACGGTGGT+TGG | 0.455519 | 1.4:+83274810 | MS.gene73478:CDS |
GATGATATGGTTATGTTAGA+TGG | 0.456593 | 1.4:+83270647 | MS.gene73478:CDS |
AAGCTGGTTTGGCTGTGGCA+GGG | 0.457039 | 1.4:+83271467 | MS.gene73478:CDS |
GCAATGCTAAATTTGTGCTC+TGG | 0.457671 | 1.4:-83278504 | None:intergenic |
ACTTCTTCCATCTGATGTCC+TGG | 0.459835 | 1.4:+83276411 | MS.gene73478:CDS |
GGAGGAAGAGGAGTGAATAT+AGG | 0.462519 | 1.4:+83274677 | MS.gene73478:intron |
TGATTCATCTATGCTGTGGA+TGG | 0.465197 | 1.4:+83275704 | MS.gene73478:CDS |
GCAACCACATTCATTCTTTG+CGG | 0.465286 | 1.4:+83276950 | MS.gene73478:CDS |
TCGGCAGTCCTGTCTCTCCT+TGG | 0.466551 | 1.4:+83276774 | MS.gene73478:intron |
GTATGCGAGGTATCTGAATC+AGG | 0.466931 | 1.4:+83278145 | MS.gene73478:CDS |
TCATCGTTATCACGGTGGTT+GGG | 0.467508 | 1.4:+83274811 | MS.gene73478:CDS |
TTCTCGAAATTGATTGTCAA+AGG | 0.468444 | 1.4:-83277505 | None:intergenic |
GAGGAGTGAATATAGGTTCA+TGG | 0.470463 | 1.4:+83274684 | MS.gene73478:CDS |
CTTGCATGGCTATGGGAGAA+TGG | 0.470490 | 1.4:+83277265 | MS.gene73478:CDS |
ACACAAGTGGCTCCAGCACC+AGG | 0.470901 | 1.4:+83274719 | MS.gene73478:CDS |
ACAAATCCTTTGTGAACGAT+TGG | 0.470926 | 1.4:-83275752 | None:intergenic |
TCTTGATCCAACATCAAAGA+TGG | 0.470988 | 1.4:+83271981 | MS.gene73478:CDS |
TTTGTCAGGGATGCATTCAC+AGG | 0.471664 | 1.4:+83278289 | MS.gene73478:CDS |
AAACTTCTTGATTTGTACAT+TGG | 0.474575 | 1.4:-83277530 | None:intergenic |
GTTGATATCCAAGGAGAGAC+AGG | 0.479405 | 1.4:-83276782 | None:intergenic |
CTGTTATATTTGCAGTCAGT+TGG | 0.479934 | 1.4:+83275616 | MS.gene73478:intron |
AGTTCAAGCTGGTTTGGCTG+TGG | 0.484003 | 1.4:+83271462 | MS.gene73478:CDS |
AAATAATACCATTGAAGCAT+TGG | 0.484010 | 1.4:-83277559 | None:intergenic |
GAATTATCTGGAAAAGTACT+TGG | 0.484128 | 1.4:+83271265 | MS.gene73478:CDS |
TTGCAGTCAGTTGGATTCAC+CGG | 0.485005 | 1.4:+83275625 | MS.gene73478:intron |
GAATCTACATTTAGCATTGG+AGG | 0.485431 | 1.4:+83272560 | MS.gene73478:CDS |
TTTAGTTACGCTGAGTATGA+TGG | 0.485602 | 1.4:+83270965 | MS.gene73478:CDS |
TAGCATAGTGGCGGCATTGG+AGG | 0.485779 | 1.4:-83277480 | None:intergenic |
TAAGAGCTTGAACAGTTTCA+GGG | 0.488499 | 1.4:-83272616 | None:intergenic |
GTATTTGCACTACAGTTGGC+AGG | 0.490378 | 1.4:+83278167 | MS.gene73478:CDS |
GGACTTGGCCTCATTTCAGT+TGG | 0.492225 | 1.4:+83278367 | MS.gene73478:CDS |
GTTGGATTCACCGGTGCCAC+GGG | 0.493182 | 1.4:+83275634 | MS.gene73478:CDS |
TTGCATGGCTATGGGAGAAT+GGG | 0.496761 | 1.4:+83277266 | MS.gene73478:CDS |
TCTGAATCTACATTTAGCAT+TGG | 0.497233 | 1.4:+83272557 | MS.gene73478:CDS |
CAAGATGCATTGTTATGTAA+TGG | 0.500466 | 1.4:+83271394 | MS.gene73478:CDS |
ATTCATCTATGCTGTGGATG+GGG | 0.500948 | 1.4:+83275706 | MS.gene73478:CDS |
GTGCATCTAAATAATGTAAG+AGG | 0.502740 | 1.4:+83271577 | MS.gene73478:CDS |
AAGAATGAAACCCGTGGCAC+CGG | 0.505503 | 1.4:-83275644 | None:intergenic |
GTTGGGCAGGATAAGTTTCA+CGG | 0.506973 | 1.4:+83276274 | MS.gene73478:CDS |
AGTTGGATTCACCGGTGCCA+CGG | 0.507428 | 1.4:+83275633 | MS.gene73478:CDS |
TACCTTAATATCATTAATGT+AGG | 0.508015 | 1.4:+83278346 | MS.gene73478:CDS |
GAGTGTGTTCTCGATTGAAA+AGG | 0.509533 | 1.4:+83271063 | MS.gene73478:CDS |
GTATTATCACCTAGTGGCCC+TGG | 0.510784 | 1.4:-83274737 | None:intergenic |
TCTGATACTTGCATGGCTAT+GGG | 0.511515 | 1.4:+83277258 | MS.gene73478:CDS |
TACAATTTCTGATACTTGCA+TGG | 0.513443 | 1.4:+83277251 | MS.gene73478:CDS |
ATGCTAAATTTGTGCTCTGG+TGG | 0.516026 | 1.4:-83278501 | None:intergenic |
CCCAAGTGATTATGAAGAGA+AGG | 0.516170 | 1.4:+83272035 | MS.gene73478:CDS |
TTCTGAAGGCTAAGTAAAAG+TGG | 0.518057 | 1.4:-83278259 | None:intergenic |
AATTTAGCATTGCCAAATGC+AGG | 0.518871 | 1.4:+83278514 | MS.gene73478:CDS |
TGTACACGTAATTGGTTGCA+TGG | 0.518959 | 1.4:+83272641 | MS.gene73478:CDS |
ACTCTAAAGAATCATGATGT+GGG | 0.520864 | 1.4:+83270839 | MS.gene73478:CDS |
AATATCATTAATGTAGGACT+TGG | 0.522457 | 1.4:+83278352 | MS.gene73478:CDS |
GCTCCAGCACCAGGGCCACT+AGG | 0.526747 | 1.4:+83274728 | MS.gene73478:CDS |
TTGTCCAAGCATTGAAGAGT+GGG | 0.529379 | 1.4:+83271720 | MS.gene73478:CDS |
GGTTGGATGTGTCTACTAGA+TGG | 0.529524 | 1.4:+83271611 | MS.gene73478:CDS |
TCTCGAAATTGATTGTCAAA+GGG | 0.529864 | 1.4:-83277504 | None:intergenic |
AACTCTAAAGAATCATGATG+TGG | 0.536589 | 1.4:+83270838 | MS.gene73478:CDS |
GCAGATTTGTTATCACTGGA+TGG | 0.536855 | 1.4:+83276918 | MS.gene73478:intron |
AAGTGAATCTCTGTAAGCCA+TGG | 0.537852 | 1.4:-83270912 | None:intergenic |
ATGTAAGAGGTGGTTTCTTG+AGG | 0.538517 | 1.4:+83271590 | MS.gene73478:CDS |
GCGGTGGAAATTTGATCCCA+TGG | 0.538835 | 1.4:+83270895 | MS.gene73478:CDS |
TCAGGTATTTGCACTACAGT+TGG | 0.539896 | 1.4:+83278163 | MS.gene73478:CDS |
CTTGGTGCTCTTAAGGATTG+GGG | 0.541010 | 1.4:+83271283 | MS.gene73478:CDS |
ATTTAGAAAATGTGTTGAAG+AGG | 0.544825 | 1.4:+83271555 | MS.gene73478:CDS |
CTAACTGCAAGTAAATCTCT+GGG | 0.545916 | 1.4:-83278195 | None:intergenic |
ACTTATCCTGCCCAACAGAA+AGG | 0.546266 | 1.4:-83276267 | None:intergenic |
AAATGTAAATGTGATGGTTG+TGG | 0.546859 | 1.4:+83270752 | MS.gene73478:CDS |
TTAAATATCATAGTTCAAGC+TGG | 0.547324 | 1.4:+83271451 | MS.gene73478:CDS |
CTTCCATCTGATGTCCTGGA+TGG | 0.547833 | 1.4:+83276415 | MS.gene73478:CDS |
GATTCATCTATGCTGTGGAT+GGG | 0.549596 | 1.4:+83275705 | MS.gene73478:CDS |
ACAAACACTTCTCCCCTTTG+GGG | 0.558946 | 1.4:-83278433 | None:intergenic |
GCAAACGTAAATGCAACAAA+GGG | 0.559605 | 1.4:+83277429 | MS.gene73478:CDS |
CCTTCTCTTCATAATCACTT+GGG | 0.559787 | 1.4:-83272035 | None:intergenic |
AATGCAACAAAGGGTCATCC+AGG | 0.560684 | 1.4:+83277438 | MS.gene73478:CDS |
CCATCAAGAAAAGATACAAA+AGG | 0.560761 | 1.4:+83272373 | MS.gene73478:CDS |
TGTTAAGTATGTGAAGGCCT+CGG | 0.562696 | 1.4:+83271516 | MS.gene73478:CDS |
CATTGAAGAGTGGGAAAGAG+CGG | 0.562702 | 1.4:+83271729 | MS.gene73478:CDS |
GCAAGCTGCACTCATAGAGA+TGG | 0.562769 | 1.4:+83271840 | MS.gene73478:CDS |
TTCATCTATGCTGTGGATGG+GGG | 0.565637 | 1.4:+83275707 | MS.gene73478:CDS |
TGCATCCAACAATGATAGCA+TGG | 0.567503 | 1.4:+83271342 | MS.gene73478:CDS |
AAGTATGTGAAGGCCTCGGA+GGG | 0.567719 | 1.4:+83271520 | MS.gene73478:CDS |
AAAGATTGGTATAGTTGATG+GGG | 0.569343 | 1.4:+83270724 | MS.gene73478:CDS |
GGATAGTGCACATACAGGGT+TGG | 0.569887 | 1.4:+83271243 | MS.gene73478:CDS |
TGCAAACGTAAATGCAACAA+AGG | 0.571083 | 1.4:+83277428 | MS.gene73478:CDS |
ATACCATCCAGGACATCAGA+TGG | 0.573820 | 1.4:-83276418 | None:intergenic |
CGAGGATTTCATCGTTATCA+CGG | 0.574421 | 1.4:+83274803 | MS.gene73478:CDS |
CTCTAAAGAATCATGATGTG+GGG | 0.577601 | 1.4:+83270840 | MS.gene73478:CDS |
TGACAAAATTGCAATTCTGA+AGG | 0.579139 | 1.4:-83278273 | None:intergenic |
ACCTTTGTTGTATTAGCAGG+AGG | 0.580298 | 1.4:-83270671 | None:intergenic |
CCTGCTAATACAACAAAGGT+TGG | 0.580417 | 1.4:+83270674 | MS.gene73478:CDS |
CATGGCTATGGGAGAATGGG+TGG | 0.581284 | 1.4:+83277269 | MS.gene73478:CDS |
ATGTGAAGGCCTCGGAGGGG+AGG | 0.586545 | 1.4:+83271524 | MS.gene73478:CDS |
GTTTGTGACATTATAAAATG+GGG | 0.587067 | 1.4:-83271773 | None:intergenic |
TTGAAAGTGCTATTAGGTAT+CGG | 0.587576 | 1.4:+83271653 | MS.gene73478:CDS |
GCAGAACACCAACTGAAATG+AGG | 0.592050 | 1.4:-83278375 | None:intergenic |
TTCTTTGATCAACGCATGGA+AGG | 0.594653 | 1.4:-83277326 | None:intergenic |
GTCGTATCTTACATAAGTAT+AGG | 0.595314 | 1.4:+83272582 | MS.gene73478:CDS |
GAAGTCAGACAAATTCTACC+TGG | 0.596839 | 1.4:-83271115 | None:intergenic |
AGTGAATCTCTGTAAGCCAT+GGG | 0.597155 | 1.4:-83270911 | None:intergenic |
TGGTATTGATAAGTTGAATG+TGG | 0.597976 | 1.4:+83276435 | MS.gene73478:CDS |
TTTGTCCAAGCATTGAAGAG+TGG | 0.599962 | 1.4:+83271719 | MS.gene73478:CDS |
AAAGTCTTACGATGCAGCAA+AGG | 0.601124 | 1.4:-83275797 | None:intergenic |
AGAAAGTGTTAAGTATGTGA+AGG | 0.601218 | 1.4:+83271510 | MS.gene73478:CDS |
TTGGTGCTCTTAAGGATTGG+GGG | 0.601425 | 1.4:+83271284 | MS.gene73478:CDS |
CTTGTGATTCATCTATGCTG+TGG | 0.603282 | 1.4:+83275700 | MS.gene73478:CDS |
TCAACTTATCAATACCATCC+AGG | 0.603553 | 1.4:-83276429 | None:intergenic |
ATTTGGATAGTGCACATACA+GGG | 0.607848 | 1.4:+83271239 | MS.gene73478:CDS |
TATTTGCACTACAGTTGGCA+GGG | 0.613241 | 1.4:+83278168 | MS.gene73478:CDS |
CAAGCCATTAATGCAAGTTG+CGG | 0.616439 | 1.4:-83272500 | None:intergenic |
TTAAGGTAATGCTTTAATGG+AGG | 0.616479 | 1.4:-83278331 | None:intergenic |
GCAAAATGAAGTTACACAAG+TGG | 0.620200 | 1.4:+83274706 | MS.gene73478:CDS |
CATCTAAATAATGTAAGAGG+TGG | 0.621321 | 1.4:+83271580 | MS.gene73478:CDS |
CATAGAGTATCCATAGAACA+AGG | 0.621481 | 1.4:-83278402 | None:intergenic |
TTGTCAAAGGGATAGCATAG+TGG | 0.622154 | 1.4:-83277492 | None:intergenic |
TCTAAAGAATCATGATGTGG+GGG | 0.622166 | 1.4:+83270841 | MS.gene73478:CDS |
AGATGTGGTGATCAAAGAGA+TGG | 0.622322 | 1.4:+83271888 | MS.gene73478:CDS |
TTGGGAGAATTATGTATGCG+AGG | 0.624037 | 1.4:+83278132 | MS.gene73478:CDS |
TGATAATACTCTTATTCTGG+CGG | 0.626823 | 1.4:+83274751 | MS.gene73478:CDS |
AAGTATTCCAATCACAACAG+TGG | 0.629052 | 1.4:+83272532 | MS.gene73478:CDS |
ACTGCTCATTATGTTGACAA+AGG | 0.631043 | 1.4:+83271181 | MS.gene73478:CDS |
GGGATTAACATAAAGGACAA+AGG | 0.636198 | 1.4:+83275727 | MS.gene73478:CDS |
ACATATGGAAACTATCAATG+AGG | 0.637674 | 1.4:+83270610 | None:intergenic |
CAAACACTTCTCCCCTTTGG+GGG | 0.639045 | 1.4:-83278432 | None:intergenic |
TACTCCTGCCATAACAAACA+AGG | 0.640964 | 1.4:-83276629 | None:intergenic |
GTGGTTCTTTGATCAACGCA+TGG | 0.641600 | 1.4:-83277330 | None:intergenic |
AAGATTGGTATAGTTGATGG+GGG | 0.643408 | 1.4:+83270725 | MS.gene73478:CDS |
TGCTCTCAACCTCCCCTCCG+AGG | 0.644857 | 1.4:-83271533 | None:intergenic |
TGATTGCATGTTGATATCCA+AGG | 0.647031 | 1.4:-83276791 | None:intergenic |
AAATGAGACAAACCATAAGA+CGG | 0.652641 | 1.4:-83275668 | None:intergenic |
GTGGTTGGGATATTTCAGAT+CGG | 0.653513 | 1.4:+83274825 | MS.gene73478:CDS |
GCAGACTCTGAGAAATGTCA+CGG | 0.656398 | 1.4:+83276348 | MS.gene73478:CDS |
TGTGGAACTAAATACTGCAG+CGG | 0.659585 | 1.4:+83276453 | MS.gene73478:CDS |
CTAAGAGCAGATTCTCTGTG+TGG | 0.660144 | 1.4:-83277297 | None:intergenic |
TCCTCCTGCTAATACAACAA+AGG | 0.660883 | 1.4:+83270670 | MS.gene73478:CDS |
TTGGTTGCATGGTTTCCAAG+AGG | 0.663523 | 1.4:+83272652 | MS.gene73478:CDS |
GCAGGATAAGTTTCACGGCG+AGG | 0.664395 | 1.4:+83276279 | MS.gene73478:CDS |
TATTGCAAATATTGTCAACA+CGG | 0.666087 | 1.4:+83277392 | MS.gene73478:CDS |
TCAAAGGGATAGCATAGTGG+CGG | 0.668642 | 1.4:-83277489 | None:intergenic |
TGGACAGCGGTAACAACACA+AGG | 0.670623 | 1.4:+83271145 | MS.gene73478:CDS |
TAAGTATGTGAAGGCCTCGG+AGG | 0.673487 | 1.4:+83271519 | MS.gene73478:CDS |
TGTGGAGCTAAGTATTCATG+TGG | 0.677662 | 1.4:+83270770 | MS.gene73478:CDS |
CACAAGTGGCTCCAGCACCA+GGG | 0.678997 | 1.4:+83274720 | MS.gene73478:CDS |
AAGGATCCAATCGTTCACAA+AGG | 0.682188 | 1.4:+83275746 | MS.gene73478:CDS |
ATAAGAGTATTATCACCTAG+TGG | 0.683571 | 1.4:-83274743 | None:intergenic |
TTAACACATGCGCACAGCAG+CGG | 0.684209 | 1.4:-83271432 | None:intergenic |
AGTATGTGAAGGCCTCGGAG+GGG | 0.687699 | 1.4:+83271521 | MS.gene73478:CDS |
GACTTCTGATGTATGGACAG+CGG | 0.695893 | 1.4:+83271132 | MS.gene73478:CDS |
GGATTTCATCGTTATCACGG+TGG | 0.704106 | 1.4:+83274806 | MS.gene73478:CDS |
CACTCCGCAAAGAATGAATG+TGG | 0.705480 | 1.4:-83276954 | None:intergenic |
GACGGCAAGAATGAAACCCG+TGG | 0.726515 | 1.4:-83275650 | None:intergenic |
AAATTTGAATAGTCAAGATG+TGG | 0.734445 | 1.4:+83271873 | MS.gene73478:CDS |
TAACTGCAAGTAAATCTCTG+GGG | 0.763572 | 1.4:-83278194 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 83270614 | 83278549 | 83270614 | ID=MS.gene73478 |
chr1.4 | mRNA | 83270614 | 83278549 | 83270614 | ID=MS.gene73478.t1;Parent=MS.gene73478 |
chr1.4 | exon | 83270614 | 83272056 | 83270614 | ID=MS.gene73478.t1.exon1;Parent=MS.gene73478.t1 |
chr1.4 | CDS | 83270614 | 83272056 | 83270614 | ID=cds.MS.gene73478.t1;Parent=MS.gene73478.t1 |
chr1.4 | exon | 83272368 | 83272686 | 83272368 | ID=MS.gene73478.t1.exon2;Parent=MS.gene73478.t1 |
chr1.4 | CDS | 83272368 | 83272686 | 83272368 | ID=cds.MS.gene73478.t1;Parent=MS.gene73478.t1 |
chr1.4 | exon | 83274678 | 83274859 | 83274678 | ID=MS.gene73478.t1.exon3;Parent=MS.gene73478.t1 |
chr1.4 | CDS | 83274678 | 83274859 | 83274678 | ID=cds.MS.gene73478.t1;Parent=MS.gene73478.t1 |
chr1.4 | exon | 83275631 | 83275809 | 83275631 | ID=MS.gene73478.t1.exon4;Parent=MS.gene73478.t1 |
chr1.4 | CDS | 83275631 | 83275809 | 83275631 | ID=cds.MS.gene73478.t1;Parent=MS.gene73478.t1 |
chr1.4 | exon | 83276252 | 83276536 | 83276252 | ID=MS.gene73478.t1.exon5;Parent=MS.gene73478.t1 |
chr1.4 | CDS | 83276252 | 83276536 | 83276252 | ID=cds.MS.gene73478.t1;Parent=MS.gene73478.t1 |
chr1.4 | exon | 83276621 | 83276679 | 83276621 | ID=MS.gene73478.t1.exon6;Parent=MS.gene73478.t1 |
chr1.4 | CDS | 83276621 | 83276679 | 83276621 | ID=cds.MS.gene73478.t1;Parent=MS.gene73478.t1 |
chr1.4 | exon | 83276781 | 83276817 | 83276781 | ID=MS.gene73478.t1.exon7;Parent=MS.gene73478.t1 |
chr1.4 | CDS | 83276781 | 83276817 | 83276781 | ID=cds.MS.gene73478.t1;Parent=MS.gene73478.t1 |
chr1.4 | exon | 83276922 | 83276993 | 83276922 | ID=MS.gene73478.t1.exon8;Parent=MS.gene73478.t1 |
chr1.4 | CDS | 83276922 | 83276993 | 83276922 | ID=cds.MS.gene73478.t1;Parent=MS.gene73478.t1 |
chr1.4 | exon | 83277251 | 83277572 | 83277251 | ID=MS.gene73478.t1.exon9;Parent=MS.gene73478.t1 |
chr1.4 | CDS | 83277251 | 83277572 | 83277251 | ID=cds.MS.gene73478.t1;Parent=MS.gene73478.t1 |
chr1.4 | exon | 83278130 | 83278549 | 83278130 | ID=MS.gene73478.t1.exon10;Parent=MS.gene73478.t1 |
chr1.4 | CDS | 83278130 | 83278549 | 83278130 | ID=cds.MS.gene73478.t1;Parent=MS.gene73478.t1 |
Gene Sequence |
Protein sequence |