Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73658.t1 | XP_013467989.1 | 98.5 | 267 | 4 | 0 | 1 | 267 | 218 | 484 | 2.80E-139 | 504.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73658.t1 | Q9LXJ0 | 86.9 | 267 | 32 | 1 | 1 | 267 | 210 | 473 | 1.9e-123 | 443.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73658.t1 | A0A072VK74 | 98.5 | 267 | 4 | 0 | 1 | 267 | 218 | 484 | 2.0e-139 | 504.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049351 | MS.gene73658 | 0.806542 | 7.82E-50 | -1.69E-46 |
| MS.gene049758 | MS.gene73658 | 0.825787 | 3.88E-54 | -1.69E-46 |
| MS.gene050099 | MS.gene73658 | 0.820061 | 8.37E-53 | -1.69E-46 |
| MS.gene050301 | MS.gene73658 | 0.83204 | 1.19E-55 | -1.69E-46 |
| MS.gene050529 | MS.gene73658 | 0.826309 | 2.91E-54 | -1.69E-46 |
| MS.gene05101 | MS.gene73658 | 0.817331 | 3.49E-52 | -1.69E-46 |
| MS.gene051471 | MS.gene73658 | 0.821312 | 4.32E-53 | -1.69E-46 |
| MS.gene052078 | MS.gene73658 | 0.830935 | 2.22E-55 | -1.69E-46 |
| MS.gene052178 | MS.gene73658 | 0.805033 | 1.62E-49 | -1.69E-46 |
| MS.gene052253 | MS.gene73658 | 0.814571 | 1.44E-51 | -1.69E-46 |
| MS.gene052310 | MS.gene73658 | 0.807567 | 4.75E-50 | -1.69E-46 |
| MS.gene053557 | MS.gene73658 | 0.808127 | 3.61E-50 | -1.69E-46 |
| MS.gene053836 | MS.gene73658 | 0.817002 | 4.13E-52 | -1.69E-46 |
| MS.gene055277 | MS.gene73658 | 0.834929 | 2.26E-56 | -1.69E-46 |
| MS.gene055422 | MS.gene73658 | 0.834634 | 2.68E-56 | -1.69E-46 |
| MS.gene055428 | MS.gene73658 | 0.809455 | 1.88E-50 | -1.69E-46 |
| MS.gene057121 | MS.gene73658 | 0.802718 | 4.91E-49 | -1.69E-46 |
| MS.gene058002 | MS.gene73658 | 0.818484 | 1.91E-52 | -1.69E-46 |
| MS.gene05811 | MS.gene73658 | 0.840903 | 6.57E-58 | -1.69E-46 |
| MS.gene058660 | MS.gene73658 | 0.815553 | 8.72E-52 | -1.69E-46 |
| MS.gene05907 | MS.gene73658 | 0.800353 | 1.50E-48 | -1.69E-46 |
| MS.gene059326 | MS.gene73658 | 0.813466 | 2.52E-51 | -1.69E-46 |
| MS.gene059518 | MS.gene73658 | 0.813309 | 2.73E-51 | -1.69E-46 |
| MS.gene059688 | MS.gene73658 | 0.816756 | 4.69E-52 | -1.69E-46 |
| MS.gene059692 | MS.gene73658 | 0.818154 | 2.27E-52 | -1.69E-46 |
| MS.gene059695 | MS.gene73658 | 0.817429 | 3.31E-52 | -1.69E-46 |
| MS.gene05984 | MS.gene73658 | 0.84682 | 1.71E-59 | -1.69E-46 |
| MS.gene059894 | MS.gene73658 | 0.808093 | 3.67E-50 | -1.69E-46 |
| MS.gene061049 | MS.gene73658 | 0.807047 | 6.12E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73658.t1 | MTR_1g060010 | 98.502 | 267 | 4 | 0 | 1 | 267 | 218 | 484 | 0.0 | 528 |
| MS.gene73658.t1 | MTR_7g104500 | 89.062 | 256 | 25 | 2 | 11 | 266 | 241 | 493 | 4.36e-161 | 456 |
| MS.gene73658.t1 | MTR_7g104500 | 92.093 | 215 | 17 | 0 | 11 | 225 | 241 | 455 | 6.62e-140 | 402 |
| MS.gene73658.t1 | MTR_3g055590 | 59.606 | 203 | 82 | 0 | 11 | 213 | 159 | 361 | 1.75e-84 | 258 |
| MS.gene73658.t1 | MTR_5g094120 | 58.128 | 203 | 85 | 0 | 11 | 213 | 163 | 365 | 5.65e-83 | 255 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73658.t1 | AT3G52750 | 86.590 | 261 | 32 | 1 | 7 | 267 | 216 | 473 | 2.87e-156 | 443 |
| MS.gene73658.t1 | AT3G52750 | 86.590 | 261 | 32 | 1 | 7 | 267 | 216 | 473 | 2.87e-156 | 443 |
| MS.gene73658.t1 | AT3G52750 | 86.590 | 261 | 32 | 1 | 7 | 267 | 216 | 473 | 2.87e-156 | 443 |
| MS.gene73658.t1 | AT2G36250 | 84.170 | 259 | 35 | 4 | 11 | 267 | 143 | 397 | 1.54e-151 | 429 |
| MS.gene73658.t1 | AT2G36250 | 84.170 | 259 | 35 | 4 | 11 | 267 | 224 | 478 | 1.32e-150 | 429 |
| MS.gene73658.t1 | AT2G36250 | 84.170 | 259 | 35 | 4 | 11 | 267 | 224 | 478 | 1.32e-150 | 429 |
| MS.gene73658.t1 | AT2G36250 | 84.170 | 259 | 35 | 4 | 11 | 267 | 224 | 478 | 1.32e-150 | 429 |
| MS.gene73658.t1 | AT5G55280 | 58.128 | 203 | 85 | 0 | 11 | 213 | 177 | 379 | 9.12e-83 | 255 |
| MS.gene73658.t1 | AT3G52750 | 92.857 | 126 | 9 | 0 | 7 | 132 | 216 | 341 | 1.98e-73 | 228 |
Find 67 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCGTCCTTCAAATGAAAA+AGG | 0.157995 | 1.4:+49042338 | None:intergenic |
| CAGTCTCCTTTACTAGATAT+TGG | 0.255564 | 1.4:-49041694 | MS.gene73658:CDS |
| CCTTTCTTCTTTAAGAAATC+AGG | 0.259901 | 1.4:+49039891 | None:intergenic |
| AGATTGAATGCTTCCGTTAC+AGG | 0.277515 | 1.4:+49042209 | None:intergenic |
| TGCTGATATTCGAGCTATAA+TGG | 0.295573 | 1.4:-49042006 | MS.gene73658:CDS |
| GTAATAGATCCTTCACTTAC+TGG | 0.318596 | 1.4:-49040980 | MS.gene73658:CDS |
| GCTGGAATGGGTGGTGGAAC+CGG | 0.337874 | 1.4:-49042434 | None:intergenic |
| GCAGTTAATAGCTTGTCATT+TGG | 0.353188 | 1.4:+49042248 | None:intergenic |
| AATTCCTTCTTGTGCTTGAA+TGG | 0.366217 | 1.4:+49042310 | None:intergenic |
| AGCATAACATTAATTGCAAC+CGG | 0.408343 | 1.4:-49040121 | MS.gene73658:CDS |
| CAATGCTGGTTCTTCACTGA+TGG | 0.410946 | 1.4:-49041982 | MS.gene73658:CDS |
| TGCTGATGATATTCTTCGAC+AGG | 0.422970 | 1.4:-49042186 | MS.gene73658:CDS |
| TTCCTCTTGACGCTTGAATC+CGG | 0.423864 | 1.4:+49040102 | None:intergenic |
| ATGGGTGGTGGAACCGGCAC+AGG | 0.425036 | 1.4:-49042428 | MS.gene73658:CDS |
| CCTGATTTCTTAAAGAAGAA+AGG | 0.429798 | 1.4:-49039891 | MS.gene73658:CDS |
| TTGCAGGCTGGAATGGGTGG+TGG | 0.435476 | 1.4:-49042440 | None:intergenic |
| ACTTACTGAGTGCAGATCCC+TGG | 0.436250 | 1.4:-49042047 | MS.gene73658:intron |
| GGTGGTGCTCCGATCATTGC+TGG | 0.437694 | 1.4:-49042407 | MS.gene73658:CDS |
| ATTCTTCGACAGGGCGTTCG+TGG | 0.450765 | 1.4:-49042176 | MS.gene73658:CDS |
| GGAATTGTGTGGAACATAAC+TGG | 0.451299 | 1.4:-49041655 | MS.gene73658:CDS |
| AAGGACGCTCACGCTATCCT+AGG | 0.463769 | 1.4:-49039872 | MS.gene73658:CDS |
| ATTGGTATAGAGAGGGCTAC+TGG | 0.466303 | 1.4:-49041676 | MS.gene73658:CDS |
| CCTTCCTCGTTCTCTGATGA+TGG | 0.472648 | 1.4:-49039930 | MS.gene73658:CDS |
| AAATCTACATTTACCATCCC+AGG | 0.475669 | 1.4:+49042029 | None:intergenic |
| AATGCTGGTTCTTCACTGAT+GGG | 0.476321 | 1.4:-49041981 | MS.gene73658:CDS |
| GATTGAATGCTTCCGTTACA+GGG | 0.488232 | 1.4:+49042210 | None:intergenic |
| GAGTGATCTAACTTTGTTTG+AGG | 0.488515 | 1.4:-49041629 | MS.gene73658:intron |
| CTTACTGAGTGCAGATCCCT+GGG | 0.499177 | 1.4:-49042046 | MS.gene73658:intron |
| CTTTCTTCTTTAAGAAATCA+GGG | 0.505208 | 1.4:+49039892 | None:intergenic |
| TGCTGGTGTTGCAAAGTCAA+TGG | 0.514638 | 1.4:-49042390 | MS.gene73658:CDS |
| GGTGGTGGAACCGGCACAGG+TGG | 0.528595 | 1.4:-49042425 | MS.gene73658:CDS |
| GATCGGAGCACCACCTGTGC+CGG | 0.529310 | 1.4:+49042415 | None:intergenic |
| TCTATACCAATATCTAGTAA+AGG | 0.530736 | 1.4:+49041688 | None:intergenic |
| ATACAACTGTCAATTTCAAT+CGG | 0.536237 | 1.4:-49039956 | MS.gene73658:CDS |
| TGTGTGTTCAAGGGAAAACA+AGG | 0.539311 | 1.4:-49041744 | MS.gene73658:intron |
| CGAGCTATAATGGCCAATGC+TGG | 0.546952 | 1.4:-49041996 | MS.gene73658:CDS |
| GGTTCTTCACTGATGGGGAT+AGG | 0.549568 | 1.4:-49041975 | MS.gene73658:CDS |
| TACTAGATATTGGTATAGAG+AGG | 0.549956 | 1.4:-49041684 | MS.gene73658:CDS |
| CATCAGTGAAGAACCAGCAT+TGG | 0.554126 | 1.4:+49041983 | None:intergenic |
| GATTTGAATTATACCTGTAG+TGG | 0.554427 | 1.4:+49040067 | None:intergenic |
| GCAGAAGAGTATTAAACCCT+AGG | 0.555930 | 1.4:+49039855 | None:intergenic |
| ACAGACTAGTCAGCTCACTC+AGG | 0.564624 | 1.4:-49039982 | MS.gene73658:intron |
| GCTGGTGTTGCAAAGTCAAT+GGG | 0.565632 | 1.4:-49042389 | MS.gene73658:CDS |
| TTCTCAATCTACCCCTGTAA+CGG | 0.573127 | 1.4:-49042222 | MS.gene73658:CDS |
| TCAATGGGTATACTGACTGT+TGG | 0.573761 | 1.4:-49042374 | MS.gene73658:CDS |
| AGATCCATTCAAGCACAAGA+AGG | 0.582161 | 1.4:-49042314 | MS.gene73658:CDS |
| ACATGAAGAGAAGCCACTAC+AGG | 0.584372 | 1.4:-49040080 | MS.gene73658:intron |
| ACTAGATATTGGTATAGAGA+GGG | 0.589427 | 1.4:-49041683 | MS.gene73658:CDS |
| AGGACGCTCACGCTATCCTA+GGG | 0.592290 | 1.4:-49039871 | MS.gene73658:CDS |
| TTTGCAACACCAGCAATGAT+CGG | 0.607997 | 1.4:+49042398 | None:intergenic |
| ATGGGGATAGGAACTGCGAC+TGG | 0.621300 | 1.4:-49041963 | MS.gene73658:intron |
| CTTACTTGACCAGTAAGTGA+AGG | 0.622903 | 1.4:+49040971 | None:intergenic |
| CTGAGTGCAGATCCCTGGGA+TGG | 0.627247 | 1.4:-49042042 | MS.gene73658:intron |
| ATGCTGGTTCTTCACTGATG+GGG | 0.629953 | 1.4:-49041980 | MS.gene73658:CDS |
| CCATCATCAGAGAACGAGGA+AGG | 0.634743 | 1.4:+49039930 | None:intergenic |
| AATCTACATTTACCATCCCA+GGG | 0.643720 | 1.4:+49042030 | None:intergenic |
| AACCGGATTCAAGCGTCAAG+AGG | 0.644965 | 1.4:-49040104 | MS.gene73658:CDS |
| ATTGAATGCTTCCGTTACAG+GGG | 0.665540 | 1.4:+49042211 | None:intergenic |
| CAGACTAGTCAGCTCACTCA+GGG | 0.667175 | 1.4:-49039981 | MS.gene73658:CDS |
| GCTGATGATATTCTTCGACA+GGG | 0.667848 | 1.4:-49042185 | MS.gene73658:CDS |
| GTGTGTTCAAGGGAAAACAA+GGG | 0.669673 | 1.4:-49041743 | MS.gene73658:intron |
| AGAGGGCTACTGGAATTGTG+TGG | 0.670337 | 1.4:-49041666 | MS.gene73658:CDS |
| AGAAGTTATCTACGACCTCG+TGG | 0.681487 | 1.4:-49041032 | MS.gene73658:CDS |
| TTGTGTGGAACATAACTGGT+GGG | 0.692106 | 1.4:-49041651 | MS.gene73658:CDS |
| ACTACCATCATCAGAGAACG+AGG | 0.692979 | 1.4:+49039926 | None:intergenic |
| AATTAGCACTAGGGTCCACG+AGG | 0.745457 | 1.4:+49041017 | None:intergenic |
| ATTGTGTGGAACATAACTGG+TGG | 0.767709 | 1.4:-49041652 | MS.gene73658:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTAATTAATTATTCAATTAA+AGG | - | chr1.4:49040974-49040993 | MS.gene73658:intron | 10.0% |
| !!! | ATATGTACTAATTTAATTTT+TGG | - | chr1.4:49041125-49041144 | MS.gene73658:intron | 10.0% |
| !! | ATTAATTATTCAATTAAAGG+AGG | - | chr1.4:49040977-49040996 | MS.gene73658:CDS | 15.0% |
| !! | CAATCAAGATTAAATATAAT+AGG | - | chr1.4:49041043-49041062 | MS.gene73658:CDS | 15.0% |
| !!! | AAGTATTTATATTTTCCTTT+TGG | + | chr1.4:49041818-49041837 | None:intergenic | 15.0% |
| !!! | TTTTTAATAGAATCATTTAC+AGG | - | chr1.4:49041226-49041245 | MS.gene73658:intron | 15.0% |
| !! | AATCATTTACGAATTTCTTA+TGG | + | chr1.4:49041591-49041610 | None:intergenic | 20.0% |
| !! | AATTCGTAAATGATTTGAAA+TGG | - | chr1.4:49041596-49041615 | MS.gene73658:intron | 20.0% |
| !! | CAAAAATTAAATTAGCACTA+GGG | + | chr1.4:49041289-49041308 | None:intergenic | 20.0% |
| !! | CTATATTAAATCAAATGACA+TGG | + | chr1.4:49042150-49042169 | None:intergenic | 20.0% |
| !! | GTAAAAAAGATTTACATTGT+CGG | - | chr1.4:49042080-49042099 | MS.gene73658:intron | 20.0% |
| !! | TCAAATTTAATAGATAAGAG+TGG | + | chr1.4:49040848-49040867 | None:intergenic | 20.0% |
| !! | TTCTGAACTTCATATATTAT+TGG | - | chr1.4:49040506-49040525 | MS.gene73658:intron | 20.0% |
| !!! | AGAATCTTTTAAAGAAATCA+AGG | + | chr1.4:49041013-49041032 | None:intergenic | 20.0% |
| !!! | CATGTCATTTGATTTAATAT+AGG | - | chr1.4:49042148-49042167 | MS.gene73658:intron | 20.0% |
| !!! | TTCATTATTCTAGTATTGAA+GGG | - | chr1.4:49040428-49040447 | MS.gene73658:intron | 20.0% |
| !!! | TTTCATTATTCTAGTATTGA+AGG | - | chr1.4:49040427-49040446 | MS.gene73658:intron | 20.0% |
| ! | ATACAACTGTCAATTTCAAT+CGG | - | chr1.4:49042338-49042357 | MS.gene73658:CDS | 25.0% |
| ! | ATCAGAATTATGAGTATGAA+TGG | + | chr1.4:49042279-49042298 | None:intergenic | 25.0% |
| ! | CCAAAAATTAAATTAGCACT+AGG | + | chr1.4:49041290-49041309 | None:intergenic | 25.0% |
| ! | CTATTATAACTAATGATTGC+CGG | + | chr1.4:49041544-49041563 | None:intergenic | 25.0% |
| ! | CTATTCTCTGAATATTACTT+GGG | + | chr1.4:49041793-49041812 | None:intergenic | 25.0% |
| ! | GTGAATGAATTAAATCCATA+TGG | - | chr1.4:49042104-49042123 | MS.gene73658:intron | 25.0% |
| ! | TAAGTTGCACAATTCATAAA+CGG | + | chr1.4:49041449-49041468 | None:intergenic | 25.0% |
| ! | TAATAGATAAGAGTGGATAT+AGG | + | chr1.4:49040841-49040860 | None:intergenic | 25.0% |
| ! | TATTATAACTAATGATTGCC+GGG | + | chr1.4:49041543-49041562 | None:intergenic | 25.0% |
| ! | TCTATACCAATATCTAGTAA+AGG | + | chr1.4:49040609-49040628 | None:intergenic | 25.0% |
| !! | CTAGACGATTCAAATTTTAA+AGG | + | chr1.4:49040806-49040825 | None:intergenic | 25.0% |
| !! | CTTTCTTCTTTAAGAAATCA+GGG | + | chr1.4:49042405-49042424 | None:intergenic | 25.0% |
| !!! | ATTTTGTTTAGCTGGTATTT+GGG | - | chr1.4:49041878-49041897 | MS.gene73658:intron | 25.0% |
| !!! | CCTAGTGCTAATTTAATTTT+TGG | - | chr1.4:49041287-49041306 | MS.gene73658:intron | 25.0% |
| !!! | CGATTCAAATTTTAAAGGAA+CGG | + | chr1.4:49040801-49040820 | None:intergenic | 25.0% |
| !!! | TATTTTGTTTAGCTGGTATT+TGG | - | chr1.4:49041877-49041896 | MS.gene73658:intron | 25.0% |
| AAACAAAAGCAGTGTAGAAT+TGG | + | chr1.4:49040408-49040427 | None:intergenic | 30.0% | |
| AAAGATAATGCATGAACAAC+AGG | + | chr1.4:49040191-49040210 | None:intergenic | 30.0% | |
| AATTATGAGTATGAATGGCA+TGG | + | chr1.4:49042274-49042293 | None:intergenic | 30.0% | |
| ACAAGTGTATAAAGATCAGT+AGG | - | chr1.4:49041639-49041658 | MS.gene73658:CDS | 30.0% | |
| ACTAGATATTGGTATAGAGA+GGG | - | chr1.4:49040611-49040630 | MS.gene73658:intron | 30.0% | |
| AGCATAACATTAATTGCAAC+CGG | - | chr1.4:49042173-49042192 | MS.gene73658:CDS | 30.0% | |
| ATGCAAAACAGTAATAGTGA+AGG | + | chr1.4:49041164-49041183 | None:intergenic | 30.0% | |
| CATATGGAATATGATCAACA+TGG | - | chr1.4:49042120-49042139 | MS.gene73658:intron | 30.0% | |
| CATGTTGATCATATTCCATA+TGG | + | chr1.4:49042122-49042141 | None:intergenic | 30.0% | |
| CCAAGTAATATTCAGAGAAT+AGG | - | chr1.4:49041791-49041810 | MS.gene73658:intron | 30.0% | |
| CCAGCTAAACAAAATATAAC+CGG | + | chr1.4:49041873-49041892 | None:intergenic | 30.0% | |
| CCTATTCTCTGAATATTACT+TGG | + | chr1.4:49041794-49041813 | None:intergenic | 30.0% | |
| CCTGATTTCTTAAAGAAGAA+AGG | - | chr1.4:49042403-49042422 | MS.gene73658:CDS | 30.0% | |
| CTAAAAAACAACAAAGAGGT+GGG | + | chr1.4:49040765-49040784 | None:intergenic | 30.0% | |
| GAAGCTAAAAAACAACAAAG+AGG | + | chr1.4:49040769-49040788 | None:intergenic | 30.0% | |
| GATTTGAATTATACCTGTAG+TGG | + | chr1.4:49042230-49042249 | None:intergenic | 30.0% | |
| TAAAAAACAACAAAGAGGTG+GGG | + | chr1.4:49040764-49040783 | None:intergenic | 30.0% | |
| TACTAGATATTGGTATAGAG+AGG | - | chr1.4:49040610-49040629 | MS.gene73658:intron | 30.0% | |
| TATACTATTATCATGAAGCC+AGG | - | chr1.4:49040889-49040908 | MS.gene73658:intron | 30.0% | |
| TGATTTAAAAGCTTACCACA+TGG | + | chr1.4:49040933-49040952 | None:intergenic | 30.0% | |
| TTCGTCCTTCAAATGAAAAA+GGG | + | chr1.4:49039958-49039977 | None:intergenic | 30.0% | |
| TTTCGTCCTTCAAATGAAAA+AGG | + | chr1.4:49039959-49039978 | None:intergenic | 30.0% | |
| ! | AATGTCCTTTTATCACTCTA+TGG | - | chr1.4:49041758-49041777 | MS.gene73658:intron | 30.0% |
| ! | CCTTTCTTCTTTAAGAAATC+AGG | + | chr1.4:49042406-49042425 | None:intergenic | 30.0% |
| ! | TAGTATTGAAGGGCAATTTA+AGG | - | chr1.4:49040438-49040457 | MS.gene73658:intron | 30.0% |
| ! | TATTACTGTTTTGCATGCAA+TGG | - | chr1.4:49041168-49041187 | MS.gene73658:intron | 30.0% |
| ! | TGAATATTACTTGGGTTTTG+TGG | + | chr1.4:49041785-49041804 | None:intergenic | 30.0% |
| !! | TCAAATTTTAAAGGAACGGA+GGG | + | chr1.4:49040797-49040816 | None:intergenic | 30.0% |
| !! | TTCAAATTTTAAAGGAACGG+AGG | + | chr1.4:49040798-49040817 | None:intergenic | 30.0% |
| !! | TTTTGTTTAGCTGGTATTTG+GGG | - | chr1.4:49041879-49041898 | MS.gene73658:intron | 30.0% |
| !!! | GACATTTTTTGTGTGTTCAA+GGG | - | chr1.4:49040541-49040560 | MS.gene73658:intron | 30.0% |
| !!! | TGACATTTTTTGTGTGTTCA+AGG | - | chr1.4:49040540-49040559 | MS.gene73658:intron | 30.0% |
| AAAAAACAACAAAGAGGTGG+GGG | + | chr1.4:49040763-49040782 | None:intergenic | 35.0% | |
| AAATCTACATTTACCATCCC+AGG | + | chr1.4:49040268-49040287 | None:intergenic | 35.0% | |
| AATCTACATTTACCATCCCA+GGG | + | chr1.4:49040267-49040286 | None:intergenic | 35.0% | |
| AATTCCTTCTTGTGCTTGAA+TGG | + | chr1.4:49039987-49040006 | None:intergenic | 35.0% | |
| ATAAAGATCAGTAGGTAGCT+CGG | - | chr1.4:49041647-49041666 | MS.gene73658:CDS | 35.0% | |
| ATTCAGAGAATAGGACCAAA+AGG | - | chr1.4:49041800-49041819 | MS.gene73658:intron | 35.0% | |
| CAGAATATGAAAAGGAATCC+TGG | + | chr1.4:49040910-49040929 | None:intergenic | 35.0% | |
| CAGTCTCCTTTACTAGATAT+TGG | - | chr1.4:49040600-49040619 | MS.gene73658:intron | 35.0% | |
| GCACAGATGAAACATATACT+TGG | + | chr1.4:49040723-49040742 | None:intergenic | 35.0% | |
| GCTAAAAAACAACAAAGAGG+TGG | + | chr1.4:49040766-49040785 | None:intergenic | 35.0% | |
| GTAATAGATCCTTCACTTAC+TGG | - | chr1.4:49041314-49041333 | MS.gene73658:intron | 35.0% | |
| TCGTCCTTCAAATGAAAAAG+GGG | + | chr1.4:49039957-49039976 | None:intergenic | 35.0% | |
| TGCTGATATTCGAGCTATAA+TGG | - | chr1.4:49040288-49040307 | MS.gene73658:intron | 35.0% | |
| TTGCACAATTCATAAACGGT+GGG | + | chr1.4:49041445-49041464 | None:intergenic | 35.0% | |
| ! | ATCTAACTTTGTTTGAGGTG+AGG | - | chr1.4:49040670-49040689 | MS.gene73658:intron | 35.0% |
| ! | CTTTGAGGACTAAATATTCG+TGG | + | chr1.4:49041730-49041749 | None:intergenic | 35.0% |
| ! | GAGTGATCTAACTTTGTTTG+AGG | - | chr1.4:49040665-49040684 | MS.gene73658:intron | 35.0% |
| ! | GCAGTTAATAGCTTGTCATT+TGG | + | chr1.4:49040049-49040068 | None:intergenic | 35.0% |
| ! | GGACATTCTCTATTTCTTTG+AGG | + | chr1.4:49041745-49041764 | None:intergenic | 35.0% |
| ! | TCTAACTTTGTTTGAGGTGA+GGG | - | chr1.4:49040671-49040690 | MS.gene73658:intron | 35.0% |
| !! | CCGGTTATATTTTGTTTAGC+TGG | - | chr1.4:49041870-49041889 | MS.gene73658:intron | 35.0% |
| !!! | TTTTCTGCAATTGTTGGTTC+AGG | - | chr1.4:49040464-49040483 | MS.gene73658:intron | 35.0% |
| AAAACCATTGCGTGCAAAAC+AGG | + | chr1.4:49041210-49041229 | None:intergenic | 40.0% | |
| AGATCCATTCAAGCACAAGA+AGG | - | chr1.4:49039980-49039999 | MS.gene73658:CDS | 40.0% | |
| AGATTGAATGCTTCCGTTAC+AGG | + | chr1.4:49040088-49040107 | None:intergenic | 40.0% | |
| ATGAGTATGAATGGCATGGA+TGG | + | chr1.4:49042270-49042289 | None:intergenic | 40.0% | |
| ATTGAATGCTTCCGTTACAG+GGG | + | chr1.4:49040086-49040105 | None:intergenic | 40.0% | |
| ATTGTGTGGAACATAACTGG+TGG | - | chr1.4:49040642-49040661 | MS.gene73658:intron | 40.0% | |
| CAGTATTTCCTTGTATCCCT+AGG | - | chr1.4:49041469-49041488 | MS.gene73658:intron | 40.0% | |
| CATCGAAATGATTCGATCTC+TGG | - | chr1.4:49041686-49041705 | MS.gene73658:CDS | 40.0% | |
| CCACATGGCAGAATATGAAA+AGG | + | chr1.4:49040918-49040937 | None:intergenic | 40.0% | |
| CTTACTTGACCAGTAAGTGA+AGG | + | chr1.4:49041326-49041345 | None:intergenic | 40.0% | |
| GATTGAATGCTTCCGTTACA+GGG | + | chr1.4:49040087-49040106 | None:intergenic | 40.0% | |
| GCTGATGATATTCTTCGACA+GGG | - | chr1.4:49040109-49040128 | MS.gene73658:CDS | 40.0% | |
| GGAATTGTGTGGAACATAAC+TGG | - | chr1.4:49040639-49040658 | MS.gene73658:intron | 40.0% | |
| GTGGTCCATAGAGTGATAAA+AGG | + | chr1.4:49041766-49041785 | None:intergenic | 40.0% | |
| GTGTGTTCAAGGGAAAACAA+GGG | - | chr1.4:49040551-49040570 | MS.gene73658:intron | 40.0% | |
| GTTGCACAATTCATAAACGG+TGG | + | chr1.4:49041446-49041465 | None:intergenic | 40.0% | |
| TCCTGTAATGTGAACTTCTC+CGG | - | chr1.4:49041851-49041870 | MS.gene73658:intron | 40.0% | |
| TCCTTCAAATGAAAAAGGGG+TGG | + | chr1.4:49039954-49039973 | None:intergenic | 40.0% | |
| TGCAAGTTGCACAATTCCTA+GGG | + | chr1.4:49041488-49041507 | None:intergenic | 40.0% | |
| TGCTGATGATATTCTTCGAC+AGG | - | chr1.4:49040108-49040127 | MS.gene73658:CDS | 40.0% | |
| TGGGGGAAAAAAAAACAGCA+GGG | + | chr1.4:49040746-49040765 | None:intergenic | 40.0% | |
| TGTGTGTTCAAGGGAAAACA+AGG | - | chr1.4:49040550-49040569 | MS.gene73658:intron | 40.0% | |
| TTCTCAATCTACCCCTGTAA+CGG | - | chr1.4:49040072-49040091 | MS.gene73658:intron | 40.0% | |
| TTGTGTGGAACATAACTGGT+GGG | - | chr1.4:49040643-49040662 | MS.gene73658:intron | 40.0% | |
| TTTGCAACACCAGCAATGAT+CGG | + | chr1.4:49039899-49039918 | None:intergenic | 40.0% | |
| ! | AGGCTCTTTTCTGCAATTGT+TGG | - | chr1.4:49040458-49040477 | MS.gene73658:intron | 40.0% |
| ! | CCTTTTCATATTCTGCCATG+TGG | - | chr1.4:49040915-49040934 | MS.gene73658:intron | 40.0% |
| ! | TCAATGGGTATACTGACTGT+TGG | - | chr1.4:49039920-49039939 | MS.gene73658:CDS | 40.0% |
| !! | AATGCTGGTTCTTCACTGAT+GGG | - | chr1.4:49040313-49040332 | MS.gene73658:intron | 40.0% |
| !! | ACCACCCCTTTTTCATTTGA+AGG | - | chr1.4:49039950-49039969 | MS.gene73658:CDS | 40.0% |
| ACATGAAGAGAAGCCACTAC+AGG | - | chr1.4:49042214-49042233 | MS.gene73658:CDS | 45.0% | |
| ACCGGAGAAGTTCACATTAC+AGG | + | chr1.4:49041855-49041874 | None:intergenic | 45.0% | |
| ACTACCATCATCAGAGAACG+AGG | + | chr1.4:49042371-49042390 | None:intergenic | 45.0% | |
| AGAAGTTATCTACGACCTCG+TGG | - | chr1.4:49041262-49041281 | MS.gene73658:intron | 45.0% | |
| ATGAATGGCATGGATGGAGA+GGG | + | chr1.4:49042264-49042283 | None:intergenic | 45.0% | |
| ATTGGTATAGAGAGGGCTAC+TGG | - | chr1.4:49040618-49040637 | MS.gene73658:intron | 45.0% | |
| CAGCATTTCCTTGTATCCCT+AGG | - | chr1.4:49041506-49041525 | MS.gene73658:intron | 45.0% | |
| CATCAGTGAAGAACCAGCAT+TGG | + | chr1.4:49040314-49040333 | None:intergenic | 45.0% | |
| CTGCAAGTTGCACAATTCCT+AGG | + | chr1.4:49041489-49041508 | None:intergenic | 45.0% | |
| CTTCTTCTCCTAGGGATACA+AGG | + | chr1.4:49041517-49041536 | None:intergenic | 45.0% | |
| GCACAATTCCTAGGGATACA+AGG | + | chr1.4:49041480-49041499 | None:intergenic | 45.0% | |
| GGGGGAAAAAAAAACAGCAG+GGG | + | chr1.4:49040745-49040764 | None:intergenic | 45.0% | |
| GTGGGGGAAAAAAAAACAGC+AGG | + | chr1.4:49040747-49040766 | None:intergenic | 45.0% | |
| TATGAATGGCATGGATGGAG+AGG | + | chr1.4:49042265-49042284 | None:intergenic | 45.0% | |
| TTCCTCTTGACGCTTGAATC+CGG | + | chr1.4:49042195-49042214 | None:intergenic | 45.0% | |
| ! | GATACCTGTTTTGCACGCAA+TGG | - | chr1.4:49041203-49041222 | MS.gene73658:intron | 45.0% |
| !! | ATGCTGGTTCTTCACTGATG+GGG | - | chr1.4:49040314-49040333 | MS.gene73658:intron | 45.0% |
| !! | CAATGCTGGTTCTTCACTGA+TGG | - | chr1.4:49040312-49040331 | MS.gene73658:intron | 45.0% |
| !! | GCTGGTGTTGCAAAGTCAAT+GGG | - | chr1.4:49039905-49039924 | MS.gene73658:CDS | 45.0% |
| !! | TGCTGGTGTTGCAAAGTCAA+TGG | - | chr1.4:49039904-49039923 | MS.gene73658:CDS | 45.0% |
| AACCGGATTCAAGCGTCAAG+AGG | - | chr1.4:49042190-49042209 | MS.gene73658:CDS | 50.0% | |
| AATTAGCACTAGGGTCCACG+AGG | + | chr1.4:49041280-49041299 | None:intergenic | 50.0% | |
| ACTTACTGAGTGCAGATCCC+TGG | - | chr1.4:49040247-49040266 | MS.gene73658:intron | 50.0% | |
| AGAGGGCTACTGGAATTGTG+TGG | - | chr1.4:49040628-49040647 | MS.gene73658:intron | 50.0% | |
| ATGGATGGAGAGGGAATGAG+AGG | + | chr1.4:49042255-49042274 | None:intergenic | 50.0% | |
| CCATCATCAGAGAACGAGGA+AGG | + | chr1.4:49042367-49042386 | None:intergenic | 50.0% | |
| CCCTAGGAGAAGAAGATACC+CGG | - | chr1.4:49041522-49041541 | MS.gene73658:intron | 50.0% | |
| CCGGGTATCTTCTTCTCCTA+GGG | + | chr1.4:49041525-49041544 | None:intergenic | 50.0% | |
| CCTTCCTCGTTCTCTGATGA+TGG | - | chr1.4:49042364-49042383 | MS.gene73658:CDS | 50.0% | |
| CGAGCTATAATGGCCAATGC+TGG | - | chr1.4:49040298-49040317 | MS.gene73658:intron | 50.0% | |
| CTTACTGAGTGCAGATCCCT+GGG | - | chr1.4:49040248-49040267 | MS.gene73658:intron | 50.0% | |
| GGAACTGCGACTGGTATGTA+TGG | - | chr1.4:49040340-49040359 | MS.gene73658:intron | 50.0% | |
| GGTTCTTCACTGATGGGGAT+AGG | - | chr1.4:49040319-49040338 | MS.gene73658:intron | 50.0% | |
| TGGATGGAGAGGGAATGAGA+GGG | + | chr1.4:49042254-49042273 | None:intergenic | 50.0% | |
| ! | ACAGACTAGTCAGCTCACTC+AGG | - | chr1.4:49042312-49042331 | MS.gene73658:CDS | 50.0% |
| ! | CAGACTAGTCAGCTCACTCA+GGG | - | chr1.4:49042313-49042332 | MS.gene73658:CDS | 50.0% |
| AAGGACGCTCACGCTATCCT+AGG | - | chr1.4:49042422-49042441 | MS.gene73658:CDS | 55.0% | |
| AGGACGCTCACGCTATCCTA+GGG | - | chr1.4:49042423-49042442 | MS.gene73658:CDS | 55.0% | |
| ATGGGGATAGGAACTGCGAC+TGG | - | chr1.4:49040331-49040350 | MS.gene73658:intron | 55.0% | |
| GCCGGGTATCTTCTTCTCCT+AGG | + | chr1.4:49041526-49041545 | None:intergenic | 55.0% | |
| ! | ATTCTTCGACAGGGCGTTCG+TGG | - | chr1.4:49040118-49040137 | MS.gene73658:CDS | 55.0% |
| CTGAGTGCAGATCCCTGGGA+TGG | - | chr1.4:49040252-49040271 | MS.gene73658:intron | 60.0% | |
| GGTGGTGCTCCGATCATTGC+TGG | - | chr1.4:49039887-49039906 | MS.gene73658:CDS | 60.0% | |
| ! | GATCGGAGCACCACCTGTGC+CGG | + | chr1.4:49039882-49039901 | None:intergenic | 65.0% |
| !! | ATGGGTGGTGGAACCGGCAC+AGG | - | chr1.4:49039866-49039885 | MS.gene73658:CDS | 65.0% |
| !! | GGTGGTGGAACCGGCACAGG+TGG | - | chr1.4:49039869-49039888 | MS.gene73658:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 49039866 | 49042450 | 49039866 | ID=MS.gene73658 |
| chr1.4 | mRNA | 49039866 | 49042450 | 49039866 | ID=MS.gene73658.t1;Parent=MS.gene73658 |
| chr1.4 | exon | 49042157 | 49042450 | 49042157 | ID=MS.gene73658.t1.exon1;Parent=MS.gene73658.t1 |
| chr1.4 | CDS | 49042157 | 49042450 | 49042157 | ID=cds.MS.gene73658.t1;Parent=MS.gene73658.t1 |
| chr1.4 | exon | 49041964 | 49042054 | 49041964 | ID=MS.gene73658.t1.exon2;Parent=MS.gene73658.t1 |
| chr1.4 | CDS | 49041964 | 49042054 | 49041964 | ID=cds.MS.gene73658.t1;Parent=MS.gene73658.t1 |
| chr1.4 | exon | 49041630 | 49041754 | 49041630 | ID=MS.gene73658.t1.exon3;Parent=MS.gene73658.t1 |
| chr1.4 | CDS | 49041630 | 49041754 | 49041630 | ID=cds.MS.gene73658.t1;Parent=MS.gene73658.t1 |
| chr1.4 | exon | 49040976 | 49041068 | 49040976 | ID=MS.gene73658.t1.exon4;Parent=MS.gene73658.t1 |
| chr1.4 | CDS | 49040976 | 49041068 | 49040976 | ID=cds.MS.gene73658.t1;Parent=MS.gene73658.t1 |
| chr1.4 | exon | 49040081 | 49040146 | 49040081 | ID=MS.gene73658.t1.exon5;Parent=MS.gene73658.t1 |
| chr1.4 | CDS | 49040081 | 49040146 | 49040081 | ID=cds.MS.gene73658.t1;Parent=MS.gene73658.t1 |
| chr1.4 | exon | 49039866 | 49040000 | 49039866 | ID=MS.gene73658.t1.exon6;Parent=MS.gene73658.t1 |
| chr1.4 | CDS | 49039866 | 49040000 | 49039866 | ID=cds.MS.gene73658.t1;Parent=MS.gene73658.t1 |
| Gene Sequence |
| Protein sequence |
